Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012740.t1 | XP_013458658.1 | 96 | 198 | 0 | 3 | 1 | 195 | 1 | 193 | 5.10E-100 | 374 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012740.t1 | Q84W66 | 60.9 | 207 | 62 | 5 | 5 | 194 | 4 | 208 | 4.7e-54 | 212.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012740.t1 | I3TAW1 | 96.0 | 198 | 0 | 3 | 1 | 195 | 1 | 193 | 3.7e-100 | 374.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene012740.t1 | TF | NF-YB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012740.t1 | MTR_4g133952 | 92.245 | 245 | 6 | 5 | 1 | 237 | 1 | 240 | 1.17e-157 | 437 |
| MS.gene012740.t1 | MTR_1g039040 | 81.188 | 101 | 19 | 0 | 58 | 158 | 4 | 104 | 1.53e-58 | 184 |
| MS.gene012740.t1 | MTR_2g026710 | 61.207 | 116 | 41 | 1 | 58 | 173 | 15 | 126 | 6.04e-51 | 163 |
| MS.gene012740.t1 | MTR_5g095740 | 61.739 | 115 | 44 | 0 | 41 | 155 | 4 | 118 | 2.00e-50 | 163 |
| MS.gene012740.t1 | MTR_7g061270 | 68.750 | 96 | 30 | 0 | 58 | 153 | 24 | 119 | 1.73e-49 | 160 |
| MS.gene012740.t1 | MTR_3g058980 | 70.103 | 97 | 29 | 0 | 59 | 155 | 26 | 122 | 1.80e-49 | 160 |
| MS.gene012740.t1 | MTR_7g100650 | 68.750 | 96 | 30 | 0 | 58 | 153 | 24 | 119 | 2.83e-49 | 159 |
| MS.gene012740.t1 | MTR_1g072790 | 62.069 | 116 | 42 | 1 | 40 | 153 | 7 | 122 | 9.35e-49 | 158 |
| MS.gene012740.t1 | MTR_4g119500 | 55.556 | 126 | 56 | 0 | 41 | 166 | 3 | 128 | 1.46e-48 | 156 |
| MS.gene012740.t1 | MTR_1g088860 | 60.177 | 113 | 44 | 1 | 42 | 154 | 19 | 130 | 2.00e-48 | 158 |
| MS.gene012740.t1 | MTR_8g091720 | 64.948 | 97 | 34 | 0 | 59 | 155 | 27 | 123 | 1.13e-46 | 154 |
| MS.gene012740.t1 | MTR_8g093920 | 60.606 | 99 | 39 | 0 | 59 | 157 | 39 | 137 | 1.50e-45 | 151 |
| MS.gene012740.t1 | MTR_0392s0020 | 61.616 | 99 | 38 | 0 | 58 | 156 | 16 | 114 | 3.01e-45 | 148 |
| MS.gene012740.t1 | MTR_4g133938 | 65.957 | 94 | 32 | 0 | 61 | 154 | 20 | 113 | 5.03e-44 | 145 |
| MS.gene012740.t1 | MTR_1g083070 | 51.087 | 92 | 45 | 0 | 60 | 151 | 4 | 95 | 3.07e-33 | 117 |
| MS.gene012740.t1 | MTR_1g029070 | 47.475 | 99 | 52 | 0 | 59 | 157 | 51 | 149 | 4.72e-28 | 105 |
| MS.gene012740.t1 | MTR_5g095900 | 50.000 | 92 | 46 | 0 | 57 | 148 | 13 | 104 | 1.10e-24 | 96.7 |
| MS.gene012740.t1 | MTR_1g028480 | 58.065 | 62 | 26 | 0 | 90 | 151 | 19 | 80 | 7.11e-21 | 84.7 |
| MS.gene012740.t1 | MTR_1g029100 | 40.789 | 76 | 45 | 0 | 65 | 140 | 7 | 82 | 8.71e-20 | 81.3 |
| MS.gene012740.t1 | MTR_2g056000 | 38.272 | 81 | 50 | 0 | 60 | 140 | 41 | 121 | 2.33e-17 | 77.4 |
| MS.gene012740.t1 | MTR_4g112380 | 37.975 | 79 | 49 | 0 | 60 | 138 | 11 | 89 | 1.85e-15 | 71.6 |
| MS.gene012740.t1 | MTR_5g095860 | 39.785 | 93 | 42 | 2 | 60 | 148 | 16 | 98 | 1.49e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012740.t1 | AT5G47670 | 60.849 | 212 | 62 | 6 | 5 | 198 | 4 | 212 | 5.60e-74 | 224 |
| MS.gene012740.t1 | AT5G47670 | 60.849 | 212 | 62 | 6 | 5 | 198 | 4 | 212 | 5.60e-74 | 224 |
| MS.gene012740.t1 | AT5G47670 | 65.537 | 177 | 41 | 5 | 39 | 198 | 10 | 183 | 8.77e-69 | 210 |
| MS.gene012740.t1 | AT1G21970 | 49.351 | 231 | 96 | 4 | 24 | 237 | 12 | 238 | 4.89e-64 | 199 |
| MS.gene012740.t1 | AT4G14540 | 61.739 | 115 | 44 | 0 | 42 | 156 | 3 | 117 | 1.35e-51 | 165 |
| MS.gene012740.t1 | AT2G38880 | 60.714 | 112 | 44 | 0 | 42 | 153 | 3 | 114 | 6.09e-50 | 160 |
| MS.gene012740.t1 | AT2G38880 | 60.714 | 112 | 44 | 0 | 42 | 153 | 3 | 114 | 7.16e-50 | 160 |
| MS.gene012740.t1 | AT2G38880 | 60.714 | 112 | 44 | 0 | 42 | 153 | 3 | 114 | 7.16e-50 | 160 |
| MS.gene012740.t1 | AT2G38880 | 60.714 | 112 | 44 | 0 | 42 | 153 | 3 | 114 | 7.16e-50 | 160 |
| MS.gene012740.t1 | AT5G47640 | 68.687 | 99 | 31 | 0 | 59 | 157 | 26 | 124 | 1.05e-49 | 161 |
| MS.gene012740.t1 | AT2G37060 | 61.818 | 110 | 42 | 0 | 44 | 153 | 14 | 123 | 3.08e-49 | 159 |
| MS.gene012740.t1 | AT2G37060 | 61.818 | 110 | 42 | 0 | 44 | 153 | 14 | 123 | 3.08e-49 | 159 |
| MS.gene012740.t1 | AT2G37060 | 61.818 | 110 | 42 | 0 | 44 | 153 | 14 | 123 | 3.08e-49 | 159 |
| MS.gene012740.t1 | AT3G53340 | 54.483 | 145 | 60 | 3 | 58 | 198 | 27 | 169 | 1.98e-48 | 157 |
| MS.gene012740.t1 | AT3G53340 | 54.483 | 145 | 60 | 3 | 58 | 198 | 27 | 169 | 1.98e-48 | 157 |
| MS.gene012740.t1 | AT2G38880 | 59.259 | 108 | 44 | 0 | 42 | 149 | 3 | 110 | 7.21e-47 | 152 |
| MS.gene012740.t1 | AT2G38880 | 65.591 | 93 | 32 | 0 | 58 | 150 | 19 | 111 | 3.56e-46 | 149 |
| MS.gene012740.t1 | AT2G38880 | 58.716 | 109 | 45 | 0 | 42 | 150 | 3 | 111 | 5.54e-46 | 151 |
| MS.gene012740.t1 | AT2G38880 | 58.716 | 109 | 45 | 0 | 42 | 150 | 3 | 111 | 5.54e-46 | 151 |
| MS.gene012740.t1 | AT2G38880 | 65.591 | 93 | 32 | 0 | 58 | 150 | 19 | 111 | 2.55e-45 | 149 |
| MS.gene012740.t1 | AT2G38880 | 65.591 | 93 | 32 | 0 | 58 | 150 | 19 | 111 | 2.55e-45 | 149 |
| MS.gene012740.t1 | AT2G38880 | 65.591 | 93 | 32 | 0 | 58 | 150 | 19 | 111 | 2.55e-45 | 149 |
| MS.gene012740.t1 | AT2G13570 | 62.887 | 97 | 36 | 0 | 59 | 155 | 35 | 131 | 5.90e-45 | 150 |
| MS.gene012740.t1 | AT2G47810 | 59.615 | 104 | 42 | 0 | 51 | 154 | 42 | 145 | 8.96e-45 | 147 |
| MS.gene012740.t1 | AT3G53340 | 66.667 | 93 | 31 | 0 | 58 | 150 | 27 | 119 | 9.47e-45 | 146 |
| MS.gene012740.t1 | AT3G53340 | 67.021 | 94 | 31 | 0 | 58 | 151 | 27 | 120 | 1.16e-44 | 147 |
| MS.gene012740.t1 | AT3G53340 | 67.021 | 94 | 31 | 0 | 58 | 151 | 27 | 120 | 1.16e-44 | 147 |
| MS.gene012740.t1 | AT1G09030 | 54.167 | 96 | 44 | 0 | 60 | 155 | 3 | 98 | 1.37e-37 | 129 |
| MS.gene012740.t1 | AT5G23090 | 31.731 | 104 | 69 | 1 | 60 | 161 | 11 | 114 | 5.78e-17 | 75.9 |
| MS.gene012740.t1 | AT5G23090 | 31.731 | 104 | 69 | 1 | 60 | 161 | 11 | 114 | 5.78e-17 | 75.9 |
| MS.gene012740.t1 | AT5G23090 | 31.731 | 104 | 69 | 1 | 60 | 161 | 11 | 114 | 5.78e-17 | 75.9 |
| MS.gene012740.t1 | AT5G23090 | 32.653 | 98 | 64 | 1 | 60 | 155 | 11 | 108 | 1.23e-16 | 75.1 |
| MS.gene012740.t1 | AT5G08190 | 32.653 | 98 | 64 | 1 | 60 | 155 | 11 | 108 | 2.96e-16 | 73.9 |
| MS.gene012740.t1 | AT5G08190 | 31.373 | 102 | 68 | 1 | 60 | 159 | 11 | 112 | 4.17e-16 | 73.6 |
| MS.gene012740.t1 | AT5G23090 | 32.558 | 86 | 56 | 1 | 78 | 161 | 16 | 101 | 6.60e-12 | 62.0 |
Find 61 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTATGGAATATGGAAATTT+AGG | 0.157903 | 8.1:-730985 | MS.gene012740:CDS |
| CATCCAAATGGAGGGTATTA+TGG | 0.196296 | 8.1:-730934 | MS.gene012740:CDS |
| CCAATACTCATTTATATTGA+TGG | 0.259870 | 8.1:+730782 | None:intergenic |
| GGAAAGAGGGGTATGGAATA+TGG | 0.311976 | 8.1:-730994 | MS.gene012740:CDS |
| ATCCTTATCACATTTGCAAT+TGG | 0.375002 | 8.1:+731285 | None:intergenic |
| GAGTACATCAGCTTCATAAC+TGG | 0.376606 | 8.1:-731189 | MS.gene012740:CDS |
| CCCACCAACACCAATTCTTC+TGG | 0.388520 | 8.1:-733200 | MS.gene012740:intron |
| TTATTACGTACCAGAAGAAT+TGG | 0.393519 | 8.1:+733190 | None:intergenic |
| TTCCCATAATACCCTCCATT+TGG | 0.403389 | 8.1:+730931 | None:intergenic |
| CACCCAGCAGCAATGGAAAC+TGG | 0.404381 | 8.1:-733251 | None:intergenic |
| ATCCAAATGGAGGGTATTAT+GGG | 0.410012 | 8.1:-730933 | MS.gene012740:CDS |
| CATCGTTACCGTGAGCTTGA+AGG | 0.410024 | 8.1:-731048 | MS.gene012740:CDS |
| AACTGCAGAAGATGTGCTTT+GGG | 0.416101 | 8.1:-731124 | MS.gene012740:CDS |
| GTATGGAATATGGAAATTTA+GGG | 0.421974 | 8.1:-730984 | MS.gene012740:CDS |
| GAAACTGGAGGAGGGTTTCA+TGG | 0.423802 | 8.1:-733236 | MS.gene012740:CDS |
| TAACTGCAGAAGATGTGCTT+TGG | 0.426184 | 8.1:-731125 | MS.gene012740:CDS |
| TGGTGTTGGTGGGGAGTTTG+CGG | 0.433913 | 8.1:+733210 | None:intergenic |
| TTTGTCCCACAGTTTCATAT+TGG | 0.443088 | 8.1:-730958 | MS.gene012740:CDS |
| TTTCATATTGGTCATCCAAA+TGG | 0.444564 | 8.1:-730946 | MS.gene012740:CDS |
| TGGAGGCTCATCTCATTCTC+AGG | 0.455169 | 8.1:-730839 | MS.gene012740:CDS |
| CTTTGGGCTATGAGTAAGCT+TGG | 0.475258 | 8.1:-731108 | MS.gene012740:CDS |
| TGCCAATTGCAAATGTGATA+AGG | 0.483489 | 8.1:-731287 | MS.gene012740:CDS |
| AACAATAGCCACTCATCAGC+TGG | 0.494856 | 8.1:-731357 | MS.gene012740:CDS |
| TGTACTCAGACACACACTCT+TGG | 0.503017 | 8.1:+731205 | None:intergenic |
| ACCAGAAGAATTGGTGTTGG+TGG | 0.512322 | 8.1:+733199 | None:intergenic |
| CCATCCCTCATCATATAAGT+TGG | 0.513039 | 8.1:+730901 | None:intergenic |
| CATTTGCAATTGGCATGAAA+CGG | 0.523120 | 8.1:+731295 | None:intergenic |
| CGATGAAGATACATTGTAAG+AGG | 0.530199 | 8.1:+731066 | None:intergenic |
| ATGGAATATGGAAATTTAGG+GGG | 0.530290 | 8.1:-730982 | MS.gene012740:CDS |
| AGTTGAACCATTGGGAAAGA+GGG | 0.531621 | 8.1:-731007 | MS.gene012740:CDS |
| CCAGAAGAATTGGTGTTGGT+GGG | 0.532173 | 8.1:+733200 | None:intergenic |
| GAGTTGAACCATTGGGAAAG+AGG | 0.533551 | 8.1:-731008 | MS.gene012740:CDS |
| TCCATACCCCTCTTTCCCAA+TGG | 0.539795 | 8.1:+731000 | None:intergenic |
| CTCAATGAGAGTTGAACCAT+TGG | 0.541003 | 8.1:-731016 | MS.gene012740:CDS |
| CAATGGTTCAACTCTCATTG+AGG | 0.552356 | 8.1:+731017 | None:intergenic |
| CATATTGGTCATCCAAATGG+AGG | 0.553538 | 8.1:-730943 | MS.gene012740:CDS |
| TGGAATATGGAAATTTAGGG+GGG | 0.554385 | 8.1:-730981 | MS.gene012740:CDS |
| ACCATTGGGAAAGAGGGGTA+TGG | 0.565142 | 8.1:-731001 | MS.gene012740:CDS |
| CTGCACCAACTTATATGATG+AGG | 0.576417 | 8.1:-730906 | MS.gene012740:CDS |
| GCAGCAATGGAAACTGGAGG+AGG | 0.578206 | 8.1:-733245 | None:intergenic |
| CTTGCAAATGCTGAAGCCAA+TGG | 0.581895 | 8.1:-730814 | MS.gene012740:CDS |
| GTTCTGTTCCAGCTGATGAG+TGG | 0.584456 | 8.1:+731349 | None:intergenic |
| ATGAATACGAGGCAGCAAGT+AGG | 0.584820 | 8.1:-731390 | MS.gene012740:CDS |
| TTGATGGTGATGATGACCAT+TGG | 0.595421 | 8.1:+730798 | None:intergenic |
| TCAATGAGAGTTGAACCATT+GGG | 0.596922 | 8.1:-731015 | MS.gene012740:CDS |
| TACGATCACCTTCAAGCTCA+CGG | 0.607319 | 8.1:+731040 | None:intergenic |
| AACGTTGTCAGAGAGAGCAA+AGG | 0.618049 | 8.1:-731155 | MS.gene012740:CDS |
| ATATTGGTCATCCAAATGGA+GGG | 0.621689 | 8.1:-730942 | MS.gene012740:CDS |
| CGTACCAGAAGAATTGGTGT+TGG | 0.622904 | 8.1:+733196 | None:intergenic |
| TATGGAATATGGAAATTTAG+GGG | 0.625046 | 8.1:-730983 | MS.gene012740:CDS |
| AAGACAATGAATGCATTGTG+AGG | 0.625324 | 8.1:-731326 | MS.gene012740:CDS |
| CCAACTTATATGATGAGGGA+TGG | 0.628590 | 8.1:-730901 | MS.gene012740:CDS |
| CAGAAGAATTGGTGTTGGTG+GGG | 0.631467 | 8.1:+733201 | None:intergenic |
| AGACAATGAATGCATTGTGA+GGG | 0.637888 | 8.1:-731325 | MS.gene012740:CDS |
| CAGCAATGGAAACTGGAGGA+GGG | 0.648465 | 8.1:-733244 | None:intergenic |
| TGCACCAACTTATATGATGA+GGG | 0.648613 | 8.1:-730905 | MS.gene012740:CDS |
| GGATGACCAATATGAAACTG+TGG | 0.661508 | 8.1:+730952 | None:intergenic |
| GTTGAACCATTGGGAAAGAG+GGG | 0.669657 | 8.1:-731006 | MS.gene012740:CDS |
| CAGTTTCTGAGATGAATACG+AGG | 0.679638 | 8.1:-731401 | MS.gene012740:CDS |
| CCAGCAGCAATGGAAACTGG+AGG | 0.696065 | 8.1:-733248 | None:intergenic |
| GATGACCAATATGAAACTGT+GGG | 0.700290 | 8.1:+730953 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTCAAACTTAAGTTAT+GGG | + | chr8.1:731731-731750 | None:intergenic | 15.0% |
| !! | ATACATTAGTATATACTTTA+AGG | - | chr8.1:731002-731021 | MS.gene012740:CDS | 15.0% |
| !! | TGATTACAAAGTTAATATTA+TGG | - | chr8.1:732554-732573 | MS.gene012740:intron | 15.0% |
| !!! | TTAATTAAATATTTCTGAGA+TGG | - | chr8.1:732577-732596 | MS.gene012740:intron | 15.0% |
| !! | AACAAACAAACCAATAAAAA+CGG | + | chr8.1:731950-731969 | None:intergenic | 20.0% |
| !! | ACTATGATCATAATATTACA+AGG | - | chr8.1:731473-731492 | MS.gene012740:intron | 20.0% |
| !! | CAATATTCAAACTTAAGTTA+TGG | + | chr8.1:731732-731751 | None:intergenic | 20.0% |
| !!! | AAAGAAAAAGGCATAAAAAA+AGG | - | chr8.1:731920-731939 | MS.gene012740:intron | 20.0% |
| !!! | AAGAAAAAGGCATAAAAAAA+GGG | - | chr8.1:731921-731940 | MS.gene012740:intron | 20.0% |
| !!! | ATTTGTTGATATTTTGCATA+AGG | - | chr8.1:731174-731193 | MS.gene012740:CDS | 20.0% |
| !!! | TGAATTGTGATTATGTATTT+TGG | - | chr8.1:731370-731389 | MS.gene012740:CDS | 20.0% |
| !!! | TGTTTGAATACACATATTTT+GGG | + | chr8.1:731831-731850 | None:intergenic | 20.0% |
| ! | AAAACAATGGAGAAAGAAAA+AGG | + | chr8.1:732393-732412 | None:intergenic | 25.0% |
| ! | GTATGGAATATGGAAATTTA+GGG | - | chr8.1:733044-733063 | MS.gene012740:intron | 25.0% |
| ! | TATGGAATATGGAAATTTAG+GGG | - | chr8.1:733045-733064 | MS.gene012740:intron | 25.0% |
| ! | TATTGTTACTCATCAATAAG+TGG | + | chr8.1:731615-731634 | None:intergenic | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr8.1:732406-732425 | None:intergenic | 25.0% |
| !! | GTGTTTGAATACACATATTT+TGG | + | chr8.1:731832-731851 | None:intergenic | 25.0% |
| !!! | AACCACTTTTTGACAATTTT+TGG | - | chr8.1:732321-732340 | MS.gene012740:intron | 25.0% |
| !!! | CAAAACAGAAGTATCTAATT+GGG | + | chr8.1:731572-731591 | None:intergenic | 25.0% |
| !!! | TGTGATTATGTATTTTGGAA+TGG | - | chr8.1:731375-731394 | MS.gene012740:CDS | 25.0% |
| AACAGTGATGAGATAGTTAA+CGG | + | chr8.1:732223-732242 | None:intergenic | 30.0% | |
| AAGAAGACAAGCAGATAAAA+AGG | + | chr8.1:731532-731551 | None:intergenic | 30.0% | |
| AATAAGAAGTGAGAAAACCA+AGG | - | chr8.1:732418-732437 | MS.gene012740:intron | 30.0% | |
| ACGAATGCATGAAAAGAAAA+AGG | - | chr8.1:731908-731927 | MS.gene012740:intron | 30.0% | |
| AGATAAAAAGGCTTAAAAGG+TGG | + | chr8.1:731520-731539 | None:intergenic | 30.0% | |
| AGCAGATAAAAAGGCTTAAA+AGG | + | chr8.1:731523-731542 | None:intergenic | 30.0% | |
| AGTCCAAAAATAGTACATCA+AGG | + | chr8.1:731757-731776 | None:intergenic | 30.0% | |
| ATAGTTAACGGTGTATCAAA+TGG | + | chr8.1:732211-732230 | None:intergenic | 30.0% | |
| ATCCTTATCACATTTGCAAT+TGG | + | chr8.1:732746-732765 | None:intergenic | 30.0% | |
| ATGGAATATGGAAATTTAGG+GGG | - | chr8.1:733046-733065 | MS.gene012740:intron | 30.0% | |
| CAATTTCTTAAATGACACTG+TGG | + | chr8.1:731802-731821 | None:intergenic | 30.0% | |
| GGTATGGAATATGGAAATTT+AGG | - | chr8.1:733043-733062 | MS.gene012740:intron | 30.0% | |
| GTCCAAAAATAGTACATCAA+GGG | + | chr8.1:731756-731775 | None:intergenic | 30.0% | |
| GTCCAAAAATTGTCAAAAAG+TGG | + | chr8.1:732326-732345 | None:intergenic | 30.0% | |
| GTGAGAAATCAAGATCAAAT+TGG | + | chr8.1:730967-730986 | None:intergenic | 30.0% | |
| TGACTCAACACAATATCATA+TGG | + | chr8.1:731107-731126 | None:intergenic | 30.0% | |
| TTACTTGCACAACAAAACAA+AGG | + | chr8.1:731300-731319 | None:intergenic | 30.0% | |
| TTATTACGTACCAGAAGAAT+TGG | + | chr8.1:730841-730860 | None:intergenic | 30.0% | |
| TTTCATATTGGTCATCCAAA+TGG | - | chr8.1:733082-733101 | MS.gene012740:intron | 30.0% | |
| ! | CCAATTAGATACTTCTGTTT+TGG | - | chr8.1:731570-731589 | MS.gene012740:intron | 30.0% |
| !! | AAAAGGGAAACCGTTTTTAT+TGG | - | chr8.1:731937-731956 | MS.gene012740:intron | 30.0% |
| !! | CCAAAACAGAAGTATCTAAT+TGG | + | chr8.1:731573-731592 | None:intergenic | 30.0% |
| !! | TTGGTTTTCTCACTTCTTAT+TGG | + | chr8.1:732419-732438 | None:intergenic | 30.0% |
| !!! | TTCTTTTTTCTTTGCTGTGA+AGG | - | chr8.1:730934-730953 | MS.gene012740:CDS | 30.0% |
| AACAGAGGAATCAGAACTAA+AGG | + | chr8.1:732014-732033 | None:intergenic | 35.0% | |
| AACCTTGGAAAAGAAGATGA+TGG | - | chr8.1:731334-731353 | MS.gene012740:CDS | 35.0% | |
| AAGACAATGAATGCATTGTG+AGG | - | chr8.1:732702-732721 | MS.gene012740:intron | 35.0% | |
| AGAAAGAAAAAGGAAGAGAG+AGG | + | chr8.1:732383-732402 | None:intergenic | 35.0% | |
| AGACAATGAATGCATTGTGA+GGG | - | chr8.1:732703-732722 | MS.gene012740:intron | 35.0% | |
| ATATTGGTCATCCAAATGGA+GGG | - | chr8.1:733086-733105 | MS.gene012740:intron | 35.0% | |
| CAGAACTAAAGGACAAAAAG+AGG | + | chr8.1:732003-732022 | None:intergenic | 35.0% | |
| CATTTGCAATTGGCATGAAA+CGG | + | chr8.1:732736-732755 | None:intergenic | 35.0% | |
| CCTTTAATCGCATGCAATTA+GGG | - | chr8.1:731977-731996 | MS.gene012740:intron | 35.0% | |
| CGATGAAGATACATTGTAAG+AGG | + | chr8.1:732965-732984 | None:intergenic | 35.0% | |
| CTAAGACTAAGACTATAGGT+AGG | + | chr8.1:732086-732105 | None:intergenic | 35.0% | |
| GATGACCAATATGAAACTGT+GGG | + | chr8.1:733078-733097 | None:intergenic | 35.0% | |
| TCAATGAGAGTTGAACCATT+GGG | - | chr8.1:733013-733032 | MS.gene012740:intron | 35.0% | |
| TCCTTTAATCGCATGCAATT+AGG | - | chr8.1:731976-731995 | MS.gene012740:intron | 35.0% | |
| TCTTCAACTATAATCTCACG+TGG | - | chr8.1:732178-732197 | MS.gene012740:intron | 35.0% | |
| TGCACCAACTTATATGATGA+GGG | - | chr8.1:733123-733142 | MS.gene012740:intron | 35.0% | |
| TGCCAATTGCAAATGTGATA+AGG | - | chr8.1:732741-732760 | MS.gene012740:intron | 35.0% | |
| TGGAATATGGAAATTTAGGG+GGG | - | chr8.1:733047-733066 | MS.gene012740:intron | 35.0% | |
| TTGATTACTTGAGCAAGGTT+CGG | - | chr8.1:731856-731875 | MS.gene012740:intron | 35.0% | |
| TTGTCTTCTTTCACTCTTTC+AGG | - | chr8.1:731542-731561 | MS.gene012740:intron | 35.0% | |
| TTTGTCCCACAGTTTCATAT+TGG | - | chr8.1:733070-733089 | MS.gene012740:intron | 35.0% | |
| ! | AAAGAAGATGATGGCGTAAA+TGG | - | chr8.1:731343-731362 | MS.gene012740:CDS | 35.0% |
| ! | AAGAAGATGATGGCGTAAAT+GGG | - | chr8.1:731344-731363 | MS.gene012740:CDS | 35.0% |
| ! | AAGAGTGTGAAAACTTGTCA+TGG | + | chr8.1:731699-731718 | None:intergenic | 35.0% |
| ! | GTCCCTTGATGTACTATTTT+TGG | - | chr8.1:731751-731770 | MS.gene012740:intron | 35.0% |
| ! | TCATCAGAGATTTTTGCATG+TGG | + | chr8.1:732788-732807 | None:intergenic | 35.0% |
| ! | TTTGTTGTGCAAGTAAAGCA+AGG | - | chr8.1:731304-731323 | MS.gene012740:CDS | 35.0% |
| !! | ACAGAAGTATCTAATTGGGT+TGG | + | chr8.1:731568-731587 | None:intergenic | 35.0% |
| !! | ATCCAAATGGAGGGTATTAT+GGG | - | chr8.1:733095-733114 | MS.gene012740:intron | 35.0% |
| AACTGCAGAAGATGTGCTTT+GGG | - | chr8.1:732904-732923 | MS.gene012740:intron | 40.0% | |
| AGTTGAACCATTGGGAAAGA+GGG | - | chr8.1:733021-733040 | MS.gene012740:intron | 40.0% | |
| AGTTGAAGAGAGAACGAAAG+AGG | + | chr8.1:732167-732186 | None:intergenic | 40.0% | |
| CAATGGTTCAACTCTCATTG+AGG | + | chr8.1:733014-733033 | None:intergenic | 40.0% | |
| CACAACAAAACAAAGGTGAC+TGG | + | chr8.1:731293-731312 | None:intergenic | 40.0% | |
| CATATTGGTCATCCAAATGG+AGG | - | chr8.1:733085-733104 | MS.gene012740:intron | 40.0% | |
| CCAACTTATATGATGAGGGA+TGG | - | chr8.1:733127-733146 | MS.gene012740:intron | 40.0% | |
| CCATCCCTCATCATATAAGT+TGG | + | chr8.1:733130-733149 | None:intergenic | 40.0% | |
| CCCTAATTGCATGCGATTAA+AGG | + | chr8.1:731980-731999 | None:intergenic | 40.0% | |
| CGCAATTGATTACTTGAGCA+AGG | - | chr8.1:731851-731870 | MS.gene012740:intron | 40.0% | |
| CTCAATGAGAGTTGAACCAT+TGG | - | chr8.1:733012-733031 | MS.gene012740:intron | 40.0% | |
| CTGCACCAACTTATATGATG+AGG | - | chr8.1:733122-733141 | MS.gene012740:intron | 40.0% | |
| GACAACTTTGTTGACAACCT+TGG | + | chr8.1:732438-732457 | None:intergenic | 40.0% | |
| GAGTACATCAGCTTCATAAC+TGG | - | chr8.1:732839-732858 | MS.gene012740:intron | 40.0% | |
| GATCTTGATTTCTCACATGC+AGG | - | chr8.1:730971-730990 | MS.gene012740:CDS | 40.0% | |
| GGATGACCAATATGAAACTG+TGG | + | chr8.1:733079-733098 | None:intergenic | 40.0% | |
| GGCTTAAAAGGTGGTAATAG+TGG | + | chr8.1:731511-731530 | None:intergenic | 40.0% | |
| GTGCAAGTAAAGCAAGGTAA+CGG | - | chr8.1:731310-731329 | MS.gene012740:CDS | 40.0% | |
| TAACTGCAGAAGATGTGCTT+TGG | - | chr8.1:732903-732922 | MS.gene012740:intron | 40.0% | |
| TGGGCTAAGACTAAGACTAT+AGG | + | chr8.1:732090-732109 | None:intergenic | 40.0% | |
| TTCCCATAATACCCTCCATT+TGG | + | chr8.1:733100-733119 | None:intergenic | 40.0% | |
| ! | AGACTATAGGTAGGTGTTGT+TGG | + | chr8.1:732077-732096 | None:intergenic | 40.0% |
| ! | TCAGAGATTTTTGCATGTGG+TGG | + | chr8.1:732785-732804 | None:intergenic | 40.0% |
| !! | CAGTTTCTGAGATGAATACG+AGG | - | chr8.1:732627-732646 | MS.gene012740:intron | 40.0% |
| !! | CATCCAAATGGAGGGTATTA+TGG | - | chr8.1:733094-733113 | MS.gene012740:intron | 40.0% |
| !! | GACTATAGGTAGGTGTTGTT+GGG | + | chr8.1:732076-732095 | None:intergenic | 40.0% |
| !! | TTGATGGTGATGATGACCAT+TGG | + | chr8.1:733233-733252 | None:intergenic | 40.0% |
| AACAATAGCCACTCATCAGC+TGG | - | chr8.1:732671-732690 | MS.gene012740:intron | 45.0% | |
| AACGTTGTCAGAGAGAGCAA+AGG | - | chr8.1:732873-732892 | MS.gene012740:intron | 45.0% | |
| AGAGGCAATGACAAGTAGGA+TGG | + | chr8.1:732149-732168 | None:intergenic | 45.0% | |
| ATGAATACGAGGCAGCAAGT+AGG | - | chr8.1:732638-732657 | MS.gene012740:intron | 45.0% | |
| CAAAGGTGACTGGAGTGATA+TGG | + | chr8.1:731283-731302 | None:intergenic | 45.0% | |
| CAATGACAAGTAGGATGGGT+CGG | + | chr8.1:732144-732163 | None:intergenic | 45.0% | |
| CGAAAGAGGCAATGACAAGT+AGG | + | chr8.1:732153-732172 | None:intergenic | 45.0% | |
| CGTACCAGAAGAATTGGTGT+TGG | + | chr8.1:730835-730854 | None:intergenic | 45.0% | |
| CTGAGATGGATATTGCAGCA+GGG | - | chr8.1:732591-732610 | MS.gene012740:intron | 45.0% | |
| CTTGCAAATGCTGAAGCCAA+TGG | - | chr8.1:733214-733233 | MS.gene012740:CDS | 45.0% | |
| CTTTGGGCTATGAGTAAGCT+TGG | - | chr8.1:732920-732939 | MS.gene012740:intron | 45.0% | |
| GAGGCAATGACAAGTAGGAT+GGG | + | chr8.1:732148-732167 | None:intergenic | 45.0% | |
| GAGTTGAACCATTGGGAAAG+AGG | - | chr8.1:733020-733039 | MS.gene012740:intron | 45.0% | |
| GCCAATTAGAGAGAGAGAGT+GGG | + | chr8.1:732109-732128 | None:intergenic | 45.0% | |
| GTTGAACCATTGGGAAAGAG+GGG | - | chr8.1:733022-733041 | MS.gene012740:intron | 45.0% | |
| TACGATCACCTTCAAGCTCA+CGG | + | chr8.1:732991-733010 | None:intergenic | 45.0% | |
| TGTACTCAGACACACACTCT+TGG | + | chr8.1:732826-732845 | None:intergenic | 45.0% | |
| ! | CGCCATCATCTTCTTTTCCA+AGG | + | chr8.1:731339-731358 | None:intergenic | 45.0% |
| ! | GGAAAGAGGGGTATGGAATA+TGG | - | chr8.1:733034-733053 | MS.gene012740:intron | 45.0% |
| ! | GTAGCTTTTCTCGAGAACAG+AGG | + | chr8.1:732029-732048 | None:intergenic | 45.0% |
| ! | TCTGAGATGGATATTGCAGC+AGG | - | chr8.1:732590-732609 | MS.gene012740:intron | 45.0% |
| !! | AAGCAAGGTAACGGAAACCT+TGG | - | chr8.1:731319-731338 | MS.gene012740:CDS | 45.0% |
| !! | ACCAGAAGAATTGGTGTTGG+TGG | + | chr8.1:730832-730851 | None:intergenic | 45.0% |
| !! | ATAGGTAGGTGTTGTTGGGA+GGG | + | chr8.1:732072-732091 | None:intergenic | 45.0% |
| !! | CAGAAGAATTGGTGTTGGTG+GGG | + | chr8.1:730830-730849 | None:intergenic | 45.0% |
| !! | CCAGAAGAATTGGTGTTGGT+GGG | + | chr8.1:730831-730850 | None:intergenic | 45.0% |
| !! | TATAGGTAGGTGTTGTTGGG+AGG | + | chr8.1:732073-732092 | None:intergenic | 45.0% |
| ACCATTGGGAAAGAGGGGTA+TGG | - | chr8.1:733027-733046 | MS.gene012740:intron | 50.0% | |
| AGGTGACTGGAGTGATATGG+TGG | + | chr8.1:731280-731299 | None:intergenic | 50.0% | |
| CATCGTTACCGTGAGCTTGA+AGG | - | chr8.1:732980-732999 | MS.gene012740:intron | 50.0% | |
| CCCACCAACACCAATTCTTC+TGG | - | chr8.1:730828-730847 | MS.gene012740:CDS | 50.0% | |
| GAAACTGGAGGAGGGTTTCA+TGG | - | chr8.1:730792-730811 | MS.gene012740:CDS | 50.0% | |
| GCCCACTCTCTCTCTCTAAT+TGG | - | chr8.1:732105-732124 | MS.gene012740:intron | 50.0% | |
| GGCCAATTAGAGAGAGAGAG+TGG | + | chr8.1:732110-732129 | None:intergenic | 50.0% | |
| GTTCTGTTCCAGCTGATGAG+TGG | + | chr8.1:732682-732701 | None:intergenic | 50.0% | |
| TCCATACCCCTCTTTCCCAA+TGG | + | chr8.1:733031-733050 | None:intergenic | 50.0% | |
| TGACTGGAGTGATATGGTGG+TGG | + | chr8.1:731277-731296 | None:intergenic | 50.0% | |
| TGGAGGCTCATCTCATTCTC+AGG | - | chr8.1:733189-733208 | MS.gene012740:intron | 50.0% | |
| TGACAAGTAGGATGGGTCGG+TGG | + | chr8.1:732141-732160 | None:intergenic | 55.0% | |
| !! | TGGTGTTGGTGGGGAGTTTG+CGG | + | chr8.1:730821-730840 | None:intergenic | 55.0% |
| AGTAGGATGGGTCGGTGGTG+AGG | + | chr8.1:732136-732155 | None:intergenic | 60.0% | |
| GTAGGATGGGTCGGTGGTGA+GGG | + | chr8.1:732135-732154 | None:intergenic | 60.0% | |
| TAGGATGGGTCGGTGGTGAG+GGG | + | chr8.1:732134-732153 | None:intergenic | 60.0% | |
| AGGATGGGTCGGTGGTGAGG+GGG | + | chr8.1:732133-732152 | None:intergenic | 65.0% | |
| ! | GTTGGGAGGGAGCGTGTGTC+AGG | + | chr8.1:732059-732078 | None:intergenic | 65.0% |
| GATGGGTCGGTGGTGAGGGG+GGG | + | chr8.1:732131-732150 | None:intergenic | 70.0% | |
| GCTGCTGCTGCTGCTGCTGC+TGG | - | chr8.1:733169-733188 | MS.gene012740:intron | 70.0% | |
| GCTGCTGCTGCTGCTGCTGG+AGG | - | chr8.1:733172-733191 | MS.gene012740:intron | 70.0% | |
| GGATGGGTCGGTGGTGAGGG+GGG | + | chr8.1:732132-732151 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 730789 | 733261 | 730789 | ID=MS.gene012740 |
| chr8.1 | mRNA | 730789 | 733261 | 730789 | ID=MS.gene012740.t1;Parent=MS.gene012740 |
| chr8.1 | exon | 733201 | 733261 | 733201 | ID=MS.gene012740.t1.exon1;Parent=MS.gene012740.t1 |
| chr8.1 | CDS | 733201 | 733261 | 733201 | ID=cds.MS.gene012740.t1;Parent=MS.gene012740.t1 |
| chr8.1 | exon | 730789 | 731441 | 730789 | ID=MS.gene012740.t1.exon2;Parent=MS.gene012740.t1 |
| chr8.1 | CDS | 730789 | 731441 | 730789 | ID=cds.MS.gene012740.t1;Parent=MS.gene012740.t1 |
| Gene Sequence |
| Protein sequence |
