Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012750.t1 | TKY53740.1 | 80 | 60 | 12 | 0 | 91 | 150 | 171 | 230 | 1.60E-19 | 105.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012750.t1 | Q54Y26 | 55.0 | 60 | 27 | 0 | 91 | 150 | 164 | 223 | 5.7e-13 | 75.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012750.t1 | A0A5D2FFF5 | 80.0 | 60 | 12 | 0 | 91 | 150 | 170 | 229 | 1.2e-19 | 105.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012750.t1 | MTR_1g042700 | 83.333 | 60 | 10 | 0 | 91 | 150 | 167 | 226 | 1.51e-28 | 109 |
| MS.gene012750.t1 | MTR_1g069735 | 80.000 | 60 | 12 | 0 | 91 | 150 | 172 | 231 | 3.05e-28 | 108 |
| MS.gene012750.t1 | MTR_7g097150 | 80.000 | 60 | 12 | 0 | 91 | 150 | 172 | 231 | 4.02e-28 | 108 |
| MS.gene012750.t1 | MTR_1g069735 | 80.000 | 60 | 12 | 0 | 91 | 150 | 172 | 231 | 4.15e-28 | 108 |
| MS.gene012750.t1 | MTR_1g069735 | 80.000 | 60 | 12 | 0 | 91 | 150 | 172 | 231 | 4.71e-28 | 108 |
| MS.gene012750.t1 | MTR_1g442790 | 78.333 | 60 | 13 | 0 | 91 | 150 | 162 | 221 | 5.53e-27 | 105 |
| MS.gene012750.t1 | MTR_1g442790 | 78.333 | 60 | 13 | 0 | 91 | 150 | 162 | 221 | 6.01e-27 | 105 |
| MS.gene012750.t1 | MTR_1g075880 | 71.667 | 60 | 17 | 0 | 91 | 150 | 169 | 228 | 9.25e-24 | 96.3 |
| MS.gene012750.t1 | MTR_2g040150 | 63.333 | 60 | 22 | 0 | 91 | 150 | 165 | 224 | 7.00e-19 | 82.4 |
| MS.gene012750.t1 | MTR_1g019340 | 58.333 | 60 | 25 | 0 | 91 | 150 | 160 | 219 | 3.36e-18 | 80.5 |
| MS.gene012750.t1 | MTR_3g104700 | 60.000 | 60 | 24 | 0 | 91 | 150 | 146 | 205 | 3.96e-18 | 80.1 |
| MS.gene012750.t1 | MTR_3g104700 | 60.000 | 60 | 24 | 0 | 91 | 150 | 146 | 205 | 4.60e-18 | 80.1 |
| MS.gene012750.t1 | MTR_1g019340 | 58.333 | 60 | 25 | 0 | 91 | 150 | 160 | 219 | 5.00e-18 | 79.7 |
| MS.gene012750.t1 | MTR_2g081100 | 76.744 | 43 | 10 | 0 | 5 | 47 | 514 | 556 | 3.70e-14 | 68.9 |
| MS.gene012750.t1 | MTR_2g081100 | 76.744 | 43 | 10 | 0 | 5 | 47 | 514 | 556 | 4.27e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012750.t1 | AT3G23310 | 78.333 | 60 | 13 | 0 | 91 | 150 | 172 | 231 | 1.52e-27 | 107 |
| MS.gene012750.t1 | AT4G14350 | 80.000 | 60 | 12 | 0 | 91 | 150 | 171 | 230 | 1.61e-27 | 107 |
| MS.gene012750.t1 | AT4G14350 | 80.000 | 60 | 12 | 0 | 91 | 150 | 171 | 230 | 1.61e-27 | 107 |
| MS.gene012750.t1 | AT4G14350 | 80.000 | 60 | 12 | 0 | 91 | 150 | 171 | 230 | 1.61e-27 | 107 |
| MS.gene012750.t1 | AT4G14350 | 80.000 | 60 | 12 | 0 | 91 | 150 | 171 | 230 | 1.68e-27 | 107 |
| MS.gene012750.t1 | AT1G03920 | 76.667 | 60 | 14 | 0 | 91 | 150 | 189 | 248 | 4.75e-26 | 102 |
| MS.gene012750.t1 | AT1G03920 | 76.667 | 60 | 14 | 0 | 91 | 150 | 189 | 248 | 4.75e-26 | 102 |
| MS.gene012750.t1 | AT1G03920 | 76.667 | 60 | 14 | 0 | 91 | 150 | 76 | 135 | 5.84e-26 | 102 |
| MS.gene012750.t1 | AT2G20470 | 71.667 | 60 | 17 | 0 | 91 | 150 | 176 | 235 | 5.77e-24 | 97.1 |
| MS.gene012750.t1 | AT2G20470 | 71.667 | 60 | 17 | 0 | 91 | 150 | 176 | 235 | 6.66e-24 | 96.7 |
| MS.gene012750.t1 | AT2G20470 | 71.667 | 60 | 17 | 0 | 91 | 150 | 176 | 235 | 6.66e-24 | 96.7 |
| MS.gene012750.t1 | AT1G30640 | 63.333 | 60 | 22 | 0 | 91 | 150 | 172 | 231 | 4.96e-19 | 82.8 |
| MS.gene012750.t1 | AT1G30640 | 63.333 | 60 | 22 | 0 | 91 | 150 | 172 | 231 | 4.96e-19 | 82.8 |
| MS.gene012750.t1 | AT1G30640 | 63.333 | 60 | 22 | 0 | 91 | 150 | 79 | 138 | 7.92e-19 | 82.0 |
| MS.gene012750.t1 | AT2G19400 | 63.333 | 60 | 22 | 0 | 91 | 150 | 157 | 216 | 2.47e-18 | 80.9 |
| MS.gene012750.t1 | AT4G33080 | 63.333 | 60 | 22 | 0 | 91 | 150 | 146 | 205 | 3.38e-18 | 80.5 |
| MS.gene012750.t1 | AT4G33080 | 63.333 | 60 | 22 | 0 | 91 | 150 | 146 | 205 | 3.65e-18 | 80.5 |
| MS.gene012750.t1 | AT5G09890 | 60.000 | 60 | 24 | 0 | 91 | 150 | 154 | 213 | 3.80e-17 | 77.4 |
| MS.gene012750.t1 | AT5G09890 | 60.000 | 60 | 24 | 0 | 91 | 150 | 154 | 213 | 3.84e-17 | 77.4 |
Find 28 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTTACGAATAGACTATA+TGG | 0.344676 | 8.1:+646854 | None:intergenic |
| GATGAAGCTAAGTTGTATAT+CGG | 0.363602 | 8.1:-646891 | MS.gene012750:CDS |
| CTTATCTCTTTATTCCGTAC+AGG | 0.373870 | 8.1:-648639 | MS.gene012750:CDS |
| CCTTTCCGACCTCTGGTGCT+TGG | 0.384030 | 8.1:+648530 | None:intergenic |
| TCAGTACTTCTTTCCGCATC+AGG | 0.387017 | 8.1:+646919 | None:intergenic |
| ATGAAGCTAAGTTGTATATC+GGG | 0.428346 | 8.1:-646890 | MS.gene012750:CDS |
| TGGAGAAATTTCTTTCCCTA+TGG | 0.450330 | 8.1:-648169 | MS.gene012750:intron |
| CGAGTATTTATATCTCATAA+TGG | 0.455404 | 8.1:-646973 | MS.gene012750:CDS |
| TCATCATCGCTGAAGGAAAC+CGG | 0.458878 | 8.1:+648581 | None:intergenic |
| GAACGTCATCATATCTCCAC+TGG | 0.483380 | 8.1:+646941 | None:intergenic |
| TACAGCTAGAGCTGATAGTC+CGG | 0.496465 | 8.1:-648600 | MS.gene012750:CDS |
| TTCTATCAACTTCTGCAAGA+AGG | 0.496737 | 8.1:+647043 | None:intergenic |
| GTCACCACCAGTGTTGGTTG+TGG | 0.497369 | 8.1:-648189 | MS.gene012750:CDS |
| TTATCTCTTTATTCCGTACA+GGG | 0.516748 | 8.1:-648638 | MS.gene012750:CDS |
| CAACACTGGTGGTGACCACA+TGG | 0.551919 | 8.1:+648196 | None:intergenic |
| GGCATCTTCATCATCGCTGA+AGG | 0.569407 | 8.1:+648574 | None:intergenic |
| TCGGCCTTGAAAACCCTGTA+CGG | 0.580392 | 8.1:+648625 | None:intergenic |
| AATTTCTCCACAACCAACAC+TGG | 0.581758 | 8.1:+648182 | None:intergenic |
| TTGGATATGTCAAATCTGAA+AGG | 0.592968 | 8.1:-647068 | MS.gene012750:CDS |
| TATCAGCTCTAGCTGTACTT+CGG | 0.599995 | 8.1:+648606 | None:intergenic |
| AGCTCAAAACCAAGCACCAG+AGG | 0.612912 | 8.1:-648539 | MS.gene012750:intron |
| ATATGATGACGTTCCTGATG+CGG | 0.627629 | 8.1:-646932 | MS.gene012750:CDS |
| TTCTCCACAACCAACACTGG+TGG | 0.646868 | 8.1:+648185 | None:intergenic |
| CATGTGGTCACCACCAGTGT+TGG | 0.651332 | 8.1:-648195 | MS.gene012750:CDS |
| AACGTCATCATATCTCCACT+GGG | 0.663611 | 8.1:+646942 | None:intergenic |
| TGAAGCTAAGTTGTATATCG+GGG | 0.667273 | 8.1:-646889 | MS.gene012750:CDS |
| ATAAAATCTCTGAATCCATG+TGG | 0.693504 | 8.1:-648211 | MS.gene012750:CDS |
| ATAATGGAGTATCTACCCAG+TGG | 0.705024 | 8.1:-646957 | MS.gene012750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTCTTTTAATTATC+AGG | - | chr8.1:648412-648431 | MS.gene012750:intron | 10.0% |
| !! | AAAATATTAGGAAAATTCAT+TGG | - | chr8.1:647696-647715 | MS.gene012750:intron | 15.0% |
| !! | GATGAAATTGTAAAAATATT+AGG | - | chr8.1:647684-647703 | MS.gene012750:intron | 15.0% |
| !! | GTAATTTGATGAAATATTTA+TGG | - | chr8.1:647505-647524 | MS.gene012750:intron | 15.0% |
| !!! | AAACATGTTATATATGTTTT+TGG | + | chr8.1:647538-647557 | None:intergenic | 15.0% |
| !!! | AATAAAATTAAAGTACCATA+GGG | + | chr8.1:647374-647393 | None:intergenic | 15.0% |
| !!! | TAATAAAATTAAAGTACCAT+AGG | + | chr8.1:647375-647394 | None:intergenic | 15.0% |
| !! | AGTAATTGTAAAGTTCAATA+TGG | + | chr8.1:647451-647470 | None:intergenic | 20.0% |
| !! | GAATTTGTAATCCTAATTTA+AGG | + | chr8.1:647070-647089 | None:intergenic | 20.0% |
| !! | GGTAGATATTAGAAAAAAAA+TGG | - | chr8.1:647655-647674 | MS.gene012750:intron | 20.0% |
| !!! | AGTTATTGAACTTATTTTCT+TGG | - | chr8.1:648169-648188 | MS.gene012750:intron | 20.0% |
| !!! | GTCATATACAATTTGTTATT+AGG | - | chr8.1:647634-647653 | MS.gene012750:intron | 20.0% |
| !!! | TTTTGTGTTTTTAATTAGGT+TGG | - | chr8.1:648438-648457 | MS.gene012750:intron | 20.0% |
| ! | AAATATGTTGGAAACAGTTT+GGG | - | chr8.1:647777-647796 | MS.gene012750:intron | 25.0% |
| ! | AAGAGATAAGCTAAAAATGA+AGG | + | chr8.1:646876-646895 | None:intergenic | 25.0% |
| ! | ATATTCATAAGCTATACTTG+AGG | + | chr8.1:648031-648050 | None:intergenic | 25.0% |
| ! | ATTGCGAAAGAGTTAAATAA+TGG | - | chr8.1:648285-648304 | MS.gene012750:intron | 25.0% |
| ! | CGAGTATTTATATCTCATAA+TGG | - | chr8.1:648552-648571 | MS.gene012750:CDS | 25.0% |
| ! | CTATATATTGAGTTTGATCA+AGG | + | chr8.1:647747-647766 | None:intergenic | 25.0% |
| ! | GAACTTTACAATTACTATCT+AGG | - | chr8.1:647455-647474 | MS.gene012750:intron | 25.0% |
| ! | TGATGAAATATTTATGGCAT+GGG | - | chr8.1:647511-647530 | MS.gene012750:intron | 25.0% |
| ! | TTGATGAAATATTTATGGCA+TGG | - | chr8.1:647510-647529 | MS.gene012750:intron | 25.0% |
| !!! | GTGCTTTTGTGTTTTTAATT+AGG | - | chr8.1:648434-648453 | MS.gene012750:intron | 25.0% |
| !!! | GTTAATTTATTTTGACCGTT+TGG | - | chr8.1:647838-647857 | MS.gene012750:intron | 25.0% |
| !!! | TATTGAACTTATTTTCTTGG+TGG | - | chr8.1:648172-648191 | MS.gene012750:CDS | 25.0% |
| AAATTACCCTATAAGAGTCA+AGG | + | chr8.1:647492-647511 | None:intergenic | 30.0% | |
| AATATGTTGGAAACAGTTTG+GGG | - | chr8.1:647778-647797 | MS.gene012750:intron | 30.0% | |
| AATGAGTTAGAAAGAGGTTA+TGG | + | chr8.1:647998-648017 | None:intergenic | 30.0% | |
| ACTGTTTCCAACATATTTGT+CGG | + | chr8.1:647775-647794 | None:intergenic | 30.0% | |
| AGAAAATCCGACAAATATGT+TGG | - | chr8.1:647765-647784 | MS.gene012750:intron | 30.0% | |
| AGCATTTCTATTGTTAGTGA+AGG | + | chr8.1:647253-647272 | None:intergenic | 30.0% | |
| ATAAAATCTCTGAATCCATG+TGG | - | chr8.1:647314-647333 | MS.gene012750:intron | 30.0% | |
| ATGAAGCTAAGTTGTATATC+GGG | - | chr8.1:648635-648654 | MS.gene012750:CDS | 30.0% | |
| CAAAGTAACCCAGAAAAATT+TGG | + | chr8.1:647115-647134 | None:intergenic | 30.0% | |
| CAAATATGTTGGAAACAGTT+TGG | - | chr8.1:647776-647795 | MS.gene012750:intron | 30.0% | |
| CTTATTTCAATAAGCTCTCT+AGG | - | chr8.1:648060-648079 | MS.gene012750:intron | 30.0% | |
| GATGAAATATTTATGGCATG+GGG | - | chr8.1:647512-647531 | MS.gene012750:intron | 30.0% | |
| GATGAAGCTAAGTTGTATAT+CGG | - | chr8.1:648634-648653 | MS.gene012750:CDS | 30.0% | |
| GGGGAAATAAACCTTAAATT+AGG | - | chr8.1:647056-647075 | MS.gene012750:CDS | 30.0% | |
| GGGTTATATGTTGTGTTTAA+GGG | - | chr8.1:647881-647900 | MS.gene012750:intron | 30.0% | |
| TCATACAATGTGCATTGAAT+AGG | + | chr8.1:648200-648219 | None:intergenic | 30.0% | |
| TGAAGGAAATAATGACAACA+GGG | + | chr8.1:647236-647255 | None:intergenic | 30.0% | |
| TTATCTCTTTATTCCGTACA+GGG | - | chr8.1:646887-646906 | MS.gene012750:CDS | 30.0% | |
| TTGGATATGTCAAATCTGAA+AGG | - | chr8.1:648457-648476 | MS.gene012750:intron | 30.0% | |
| ! | AAACAGACTATTCTTTTGCA+TGG | + | chr8.1:648148-648167 | None:intergenic | 30.0% |
| ! | AGAGATTTTATCTAGCAAGT+TGG | + | chr8.1:647305-647324 | None:intergenic | 30.0% |
| ! | TCAAGAAACTTTTCCATTGT+GGG | + | chr8.1:647178-647197 | None:intergenic | 30.0% |
| ! | TTCAAGAAACTTTTCCATTG+TGG | + | chr8.1:647179-647198 | None:intergenic | 30.0% |
| !!! | TTATTTTGACCGTTTGGTAA+TGG | - | chr8.1:647844-647863 | MS.gene012750:intron | 30.0% |
| ACATGAACCTTGACTCTTAT+AGG | - | chr8.1:647482-647501 | MS.gene012750:intron | 35.0% | |
| AGAAGCAAAACTAATTGAGC+AGG | + | chr8.1:647406-647425 | None:intergenic | 35.0% | |
| CATCATTGACAGAAACATCT+TGG | - | chr8.1:647089-647108 | MS.gene012750:intron | 35.0% | |
| CATGAACCTTGACTCTTATA+GGG | - | chr8.1:647483-647502 | MS.gene012750:intron | 35.0% | |
| CTTATCTCTTTATTCCGTAC+AGG | - | chr8.1:646886-646905 | MS.gene012750:CDS | 35.0% | |
| GGAGATGAAAAACTTTGATG+TGG | - | chr8.1:647612-647631 | MS.gene012750:intron | 35.0% | |
| GGGGTTATATGTTGTGTTTA+AGG | - | chr8.1:647880-647899 | MS.gene012750:intron | 35.0% | |
| GTGAAGGAAATAATGACAAC+AGG | + | chr8.1:647237-647256 | None:intergenic | 35.0% | |
| GTGTAAACAATGAACCTGAT+AGG | + | chr8.1:647138-647157 | None:intergenic | 35.0% | |
| GTTGTGTTTAAGGGCTTATT+TGG | - | chr8.1:647890-647909 | MS.gene012750:intron | 35.0% | |
| GTTTAAGGGCTTATTTGGAT+TGG | - | chr8.1:647895-647914 | MS.gene012750:intron | 35.0% | |
| TAGGGAAATGAGTTAGAAAG+AGG | + | chr8.1:648004-648023 | None:intergenic | 35.0% | |
| TCCTGATTGCAAAGAGATAT+GGG | - | chr8.1:647591-647610 | MS.gene012750:intron | 35.0% | |
| TGAAGCTAAGTTGTATATCG+GGG | - | chr8.1:648636-648655 | MS.gene012750:CDS | 35.0% | |
| TGGAGAAATTTCTTTCCCTA+TGG | - | chr8.1:647356-647375 | MS.gene012750:intron | 35.0% | |
| TTCTATCAACTTCTGCAAGA+AGG | + | chr8.1:648485-648504 | None:intergenic | 35.0% | |
| ! | ACATCTTGGCCAAATTTTTC+TGG | - | chr8.1:647103-647122 | MS.gene012750:intron | 35.0% |
| ! | CATCTTGGCCAAATTTTTCT+GGG | - | chr8.1:647104-647123 | MS.gene012750:intron | 35.0% |
| !! | GAAAGAAATGTGTTTTTGCC+TGG | - | chr8.1:647718-647737 | MS.gene012750:intron | 35.0% |
| !!! | AGGTTTTTCTGGTTTCAGTT+TGG | + | chr8.1:647209-647228 | None:intergenic | 35.0% |
| !!! | GAAATGCTATTTTTCTCTGC+AGG | - | chr8.1:647265-647284 | MS.gene012750:intron | 35.0% |
| !!! | TTTTTCTGGTTTCAGTTTGG+TGG | + | chr8.1:647206-647225 | None:intergenic | 35.0% |
| AACGTCATCATATCTCCACT+GGG | + | chr8.1:648586-648605 | None:intergenic | 40.0% | |
| AAGCTATACTTGAGGAGCTT+AGG | + | chr8.1:648023-648042 | None:intergenic | 40.0% | |
| AATAATGACAACAGGGTTGG+AGG | + | chr8.1:647229-647248 | None:intergenic | 40.0% | |
| AATTTCTCCACAACCAACAC+TGG | + | chr8.1:647346-647365 | None:intergenic | 40.0% | |
| AGCTATACTTGAGGAGCTTA+GGG | + | chr8.1:648022-648041 | None:intergenic | 40.0% | |
| GGAAATAATGACAACAGGGT+TGG | + | chr8.1:647232-647251 | None:intergenic | 40.0% | |
| GTCCTGATTGCAAAGAGATA+TGG | - | chr8.1:647590-647609 | MS.gene012750:intron | 40.0% | |
| TCCCATATCTCTTTGCAATC+AGG | + | chr8.1:647595-647614 | None:intergenic | 40.0% | |
| TCCTTCCATCCATTACCAAA+CGG | + | chr8.1:647856-647875 | None:intergenic | 40.0% | |
| TCTTTCGCAATGTGAAACTC+CGG | + | chr8.1:648276-648295 | None:intergenic | 40.0% | |
| ! | ATAATGGAGTATCTACCCAG+TGG | - | chr8.1:648568-648587 | MS.gene012750:CDS | 40.0% |
| ! | ATATGATGACGTTCCTGATG+CGG | - | chr8.1:648593-648612 | MS.gene012750:CDS | 40.0% |
| ! | TAATGGATGGAAGGAGAATG+GGG | - | chr8.1:647861-647880 | MS.gene012750:intron | 40.0% |
| ! | TATCAGCTCTAGCTGTACTT+CGG | + | chr8.1:646922-646941 | None:intergenic | 40.0% |
| ! | TATTCCGTACAGGGTTTTCA+AGG | - | chr8.1:646896-646915 | MS.gene012750:CDS | 40.0% |
| ! | TTTTGAGCTTGATGTTGGCA+TGG | + | chr8.1:646975-646994 | None:intergenic | 40.0% |
| !! | GTAATGGATGGAAGGAGAAT+GGG | - | chr8.1:647860-647879 | MS.gene012750:intron | 40.0% |
| !! | TTTGACCGTTTGGTAATGGA+TGG | - | chr8.1:647848-647867 | MS.gene012750:intron | 40.0% |
| !!! | CTTGGTTTTGAGCTTGATGT+TGG | + | chr8.1:646980-646999 | None:intergenic | 40.0% |
| AACAGTTTGGGGATAACTGC+AGG | - | chr8.1:647789-647808 | MS.gene012750:intron | 45.0% | |
| ACAGTTTGGGGATAACTGCA+GGG | - | chr8.1:647790-647809 | MS.gene012750:intron | 45.0% | |
| CAAACTACAACCAGAGGAAG+AGG | - | chr8.1:647031-647050 | MS.gene012750:CDS | 45.0% | |
| GAACGTCATCATATCTCCAC+TGG | + | chr8.1:648587-648606 | None:intergenic | 45.0% | |
| GCATCTCAAACTACAACCAG+AGG | - | chr8.1:647025-647044 | MS.gene012750:CDS | 45.0% | |
| TACAACCAGAGGAAGAGGAA+GGG | - | chr8.1:647036-647055 | MS.gene012750:CDS | 45.0% | |
| TACAGCTAGAGCTGATAGTC+CGG | - | chr8.1:646925-646944 | MS.gene012750:CDS | 45.0% | |
| TCAGTACTTCTTTCCGCATC+AGG | + | chr8.1:648609-648628 | None:intergenic | 45.0% | |
| TCATCATCGCTGAAGGAAAC+CGG | + | chr8.1:646947-646966 | None:intergenic | 45.0% | |
| ! | AACAGGGTTGGAGGTTTTTC+TGG | + | chr8.1:647220-647239 | None:intergenic | 45.0% |
| ! | AGCATCTCTGGCTTAACTCA+CGG | + | chr8.1:648346-648365 | None:intergenic | 45.0% |
| ! | AGCTGTCTTTCTTTTCCCTC+CGG | - | chr8.1:648254-648273 | MS.gene012750:intron | 45.0% |
| ! | TCTGGGTTACTTTGCCTATC+AGG | - | chr8.1:647121-647140 | MS.gene012750:intron | 45.0% |
| ! | TGAGTTTGATCAAGGCATCC+AGG | + | chr8.1:647739-647758 | None:intergenic | 45.0% |
| ! | TTGAGTCGATTCACCCACAA+TGG | - | chr8.1:647162-647181 | MS.gene012750:intron | 45.0% |
| !! | ACCGTTTGGTAATGGATGGA+AGG | - | chr8.1:647852-647871 | MS.gene012750:intron | 45.0% |
| !! | GGTAATGGATGGAAGGAGAA+TGG | - | chr8.1:647859-647878 | MS.gene012750:intron | 45.0% |
| AACAGATCCTTTCCGACCTC+TGG | + | chr8.1:647005-647024 | None:intergenic | 50.0% | |
| AAGCCAGAGATGCTTCGTAG+AGG | - | chr8.1:648352-648371 | MS.gene012750:intron | 50.0% | |
| ACAACCAGAGGAAGAGGAAG+GGG | - | chr8.1:647037-647056 | MS.gene012750:CDS | 50.0% | |
| AGAGATGCTTCGTAGAGGAC+AGG | - | chr8.1:648357-648376 | MS.gene012750:intron | 50.0% | |
| AGCTCAAAACCAAGCACCAG+AGG | - | chr8.1:646986-647005 | MS.gene012750:CDS | 50.0% | |
| ATTTCCCCTTCCTCTTCCTC+TGG | + | chr8.1:647044-647063 | None:intergenic | 50.0% | |
| CAAAACCAAGCACCAGAGGT+CGG | - | chr8.1:646990-647009 | MS.gene012750:CDS | 50.0% | |
| CTACAACCAGAGGAAGAGGA+AGG | - | chr8.1:647035-647054 | MS.gene012750:CDS | 50.0% | |
| GCTTCGTAGAGGACAGGTAT+TGG | - | chr8.1:648363-648382 | MS.gene012750:intron | 50.0% | |
| GGCATCTTCATCATCGCTGA+AGG | + | chr8.1:646954-646973 | None:intergenic | 50.0% | |
| TCGCAATGTGAAACTCCGGA+GGG | + | chr8.1:648272-648291 | None:intergenic | 50.0% | |
| TCGGCCTTGAAAACCCTGTA+CGG | + | chr8.1:646903-646922 | None:intergenic | 50.0% | |
| TTCGCAATGTGAAACTCCGG+AGG | + | chr8.1:648273-648292 | None:intergenic | 50.0% | |
| TTCTCCACAACCAACACTGG+TGG | + | chr8.1:647343-647362 | None:intergenic | 50.0% | |
| ! | TGTCCTCTACGAAGCATCTC+TGG | + | chr8.1:648358-648377 | None:intergenic | 50.0% |
| CATGTGGTCACCACCAGTGT+TGG | - | chr8.1:647330-647349 | MS.gene012750:intron | 55.0% | |
| ! | CAACACTGGTGGTGACCACA+TGG | + | chr8.1:647332-647351 | None:intergenic | 55.0% |
| !! | GTCACCACCAGTGTTGGTTG+TGG | - | chr8.1:647336-647355 | MS.gene012750:intron | 55.0% |
| CCAAGCACCAGAGGTCGGAA+AGG | - | chr8.1:646995-647014 | MS.gene012750:CDS | 60.0% | |
| CCTTTCCGACCTCTGGTGCT+TGG | + | chr8.1:646998-647017 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 646869 | 648678 | 646869 | ID=MS.gene012750 |
| chr8.1 | mRNA | 646869 | 648678 | 646869 | ID=MS.gene012750.t1;Parent=MS.gene012750 |
| chr8.1 | exon | 648540 | 648678 | 648540 | ID=MS.gene012750.t1.exon1;Parent=MS.gene012750.t1 |
| chr8.1 | CDS | 648540 | 648678 | 648540 | ID=cds.MS.gene012750.t1;Parent=MS.gene012750.t1 |
| chr8.1 | exon | 648170 | 648260 | 648170 | ID=MS.gene012750.t1.exon2;Parent=MS.gene012750.t1 |
| chr8.1 | CDS | 648170 | 648260 | 648170 | ID=cds.MS.gene012750.t1;Parent=MS.gene012750.t1 |
| chr8.1 | exon | 646869 | 647091 | 646869 | ID=MS.gene012750.t1.exon3;Parent=MS.gene012750.t1 |
| chr8.1 | CDS | 646869 | 647091 | 646869 | ID=cds.MS.gene012750.t1;Parent=MS.gene012750.t1 |
| Gene Sequence |
| Protein sequence |
