Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012836.t1 | XP_003603107.1 | 94.6 | 278 | 13 | 1 | 1 | 276 | 1 | 278 | 3.40E-156 | 560.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012836.t1 | O82307 | 46.9 | 256 | 101 | 7 | 28 | 255 | 64 | 312 | 1.3e-58 | 228.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012836.t1 | G7J714 | 94.6 | 278 | 13 | 1 | 1 | 276 | 1 | 278 | 2.5e-156 | 560.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene012836.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012836.t1 | MTR_3g103960 | 94.604 | 278 | 13 | 1 | 1 | 276 | 1 | 278 | 0.0 | 545 |
| MS.gene012836.t1 | MTR_8g102100 | 44.479 | 326 | 107 | 9 | 24 | 276 | 52 | 376 | 2.05e-76 | 237 |
| MS.gene012836.t1 | MTR_6g090380 | 44.918 | 305 | 112 | 9 | 23 | 275 | 76 | 376 | 4.43e-74 | 231 |
| MS.gene012836.t1 | MTR_4g078660 | 67.890 | 109 | 34 | 1 | 49 | 157 | 56 | 163 | 3.77e-53 | 175 |
| MS.gene012836.t1 | MTR_7g092070 | 61.029 | 136 | 49 | 2 | 43 | 175 | 254 | 388 | 9.04e-53 | 183 |
| MS.gene012836.t1 | MTR_5g071070 | 64.912 | 114 | 39 | 1 | 43 | 156 | 138 | 250 | 1.31e-52 | 181 |
| MS.gene012836.t1 | MTR_5g071070 | 57.664 | 137 | 51 | 2 | 43 | 173 | 220 | 355 | 5.29e-52 | 181 |
| MS.gene012836.t1 | MTR_2g090605 | 69.524 | 105 | 31 | 1 | 53 | 157 | 77 | 180 | 1.43e-51 | 174 |
| MS.gene012836.t1 | MTR_3g029590 | 48.876 | 178 | 76 | 5 | 43 | 219 | 254 | 417 | 3.55e-49 | 173 |
| MS.gene012836.t1 | MTR_3g070880 | 49.704 | 169 | 81 | 2 | 16 | 181 | 126 | 293 | 3.62e-49 | 170 |
| MS.gene012836.t1 | MTR_5g082830 | 64.035 | 114 | 40 | 1 | 43 | 156 | 207 | 319 | 5.57e-48 | 169 |
| MS.gene012836.t1 | MTR_1g075890 | 59.690 | 129 | 50 | 2 | 43 | 171 | 219 | 345 | 6.30e-47 | 166 |
| MS.gene012836.t1 | MTR_3g435680 | 50.318 | 157 | 63 | 5 | 32 | 175 | 123 | 277 | 6.03e-46 | 159 |
| MS.gene012836.t1 | MTR_1g050438 | 60.550 | 109 | 42 | 1 | 48 | 156 | 223 | 330 | 3.43e-45 | 160 |
| MS.gene012836.t1 | MTR_0728s0020 | 60.550 | 109 | 42 | 1 | 48 | 156 | 239 | 346 | 6.00e-45 | 160 |
| MS.gene012836.t1 | MTR_3g435590 | 37.398 | 246 | 138 | 6 | 43 | 276 | 228 | 469 | 1.29e-44 | 157 |
| MS.gene012836.t1 | MTR_3g464270 | 44.231 | 156 | 83 | 2 | 52 | 207 | 8 | 159 | 1.52e-39 | 141 |
| MS.gene012836.t1 | MTR_3g464260 | 45.270 | 148 | 45 | 4 | 39 | 177 | 183 | 303 | 4.04e-29 | 115 |
| MS.gene012836.t1 | MTR_3g464290 | 56.977 | 86 | 35 | 2 | 43 | 127 | 90 | 174 | 1.98e-27 | 110 |
| MS.gene012836.t1 | MTR_3g464280 | 31.250 | 192 | 67 | 4 | 39 | 202 | 165 | 319 | 1.42e-21 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012836.t1 | AT4G29190 | 46.181 | 288 | 99 | 10 | 43 | 275 | 69 | 355 | 1.22e-69 | 219 |
| MS.gene012836.t1 | AT2G19810 | 41.411 | 326 | 130 | 9 | 10 | 275 | 34 | 358 | 3.66e-69 | 218 |
| MS.gene012836.t1 | AT2G25900 | 47.863 | 234 | 88 | 6 | 49 | 255 | 86 | 312 | 6.53e-65 | 206 |
| MS.gene012836.t1 | AT2G25900 | 47.863 | 234 | 88 | 6 | 49 | 255 | 86 | 312 | 6.53e-65 | 206 |
| MS.gene012836.t1 | AT1G03790 | 51.205 | 166 | 78 | 1 | 12 | 177 | 44 | 206 | 2.57e-56 | 186 |
| MS.gene012836.t1 | AT5G44260 | 63.636 | 121 | 41 | 1 | 37 | 157 | 47 | 164 | 1.23e-53 | 179 |
| MS.gene012836.t1 | AT2G40140 | 52.247 | 178 | 69 | 3 | 43 | 207 | 204 | 378 | 3.18e-52 | 179 |
| MS.gene012836.t1 | AT2G40140 | 52.247 | 178 | 69 | 3 | 43 | 207 | 204 | 378 | 3.18e-52 | 179 |
| MS.gene012836.t1 | AT2G41900 | 61.654 | 133 | 49 | 2 | 43 | 175 | 251 | 381 | 1.43e-51 | 179 |
| MS.gene012836.t1 | AT5G58620 | 63.158 | 114 | 41 | 1 | 43 | 156 | 199 | 311 | 4.34e-50 | 174 |
| MS.gene012836.t1 | AT5G12850 | 62.281 | 114 | 42 | 1 | 43 | 156 | 247 | 359 | 7.11e-50 | 175 |
| MS.gene012836.t1 | AT3G55980 | 55.147 | 136 | 60 | 1 | 43 | 178 | 201 | 335 | 7.65e-49 | 170 |
| MS.gene012836.t1 | AT3G55980 | 55.147 | 136 | 60 | 1 | 43 | 178 | 268 | 402 | 2.97e-48 | 169 |
| MS.gene012836.t1 | AT5G07500 | 61.261 | 111 | 42 | 1 | 48 | 158 | 47 | 156 | 8.15e-48 | 159 |
Find 80 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGTGTTGTGTTCCATTC+AGG | 0.185975 | 3.3:-85691795 | None:intergenic |
| GCCAAAATCTATGCAAAATT+TGG | 0.227605 | 3.3:+85692500 | MS.gene012836:CDS |
| TTGGCTTCATGAGGAGTGTT+AGG | 0.270195 | 3.3:+85692348 | MS.gene012836:CDS |
| TGCCCGGAGTTTCGCAAATT+AGG | 0.270671 | 3.3:+85692062 | MS.gene012836:CDS |
| TCTCAGATGGGTTCTGTGTT+TGG | 0.301160 | 3.3:+85692392 | MS.gene012836:CDS |
| TCGGTCCCTATTCCTGATAT+TGG | 0.325287 | 3.3:+85692551 | MS.gene012836:CDS |
| GTAACGACGGAACCCTTTGC+CGG | 0.351954 | 3.3:+85692171 | MS.gene012836:CDS |
| AAACTATGAAGGGGTTTCTA+TGG | 0.361016 | 3.3:+85692448 | MS.gene012836:CDS |
| TCCGCAACCCATCCAATATC+AGG | 0.361209 | 3.3:-85692563 | None:intergenic |
| TGAATTCGAACATTCGGAAT+TGG | 0.372764 | 3.3:-85691923 | None:intergenic |
| GGAGATGAAACAAATGATTC+TGG | 0.374623 | 3.3:-85692254 | None:intergenic |
| AAACTCCGGGCAAGGATTGC+CGG | 0.383876 | 3.3:-85692051 | None:intergenic |
| ACCCATCCAATATCAGGAAT+AGG | 0.409750 | 3.3:-85692557 | None:intergenic |
| TGGCTTCATGAGGAGTGTTA+GGG | 0.417289 | 3.3:+85692349 | MS.gene012836:CDS |
| GAAACCCCTTCATAGTTTGA+TGG | 0.429345 | 3.3:-85692443 | None:intergenic |
| ATTGTGTTGTGTTCCATTCA+GGG | 0.430094 | 3.3:-85691794 | None:intergenic |
| CCCATCCAATATCAGGAATA+GGG | 0.437178 | 3.3:-85692556 | None:intergenic |
| TCCCTATTCCTGATATTGGA+TGG | 0.439014 | 3.3:+85692555 | MS.gene012836:CDS |
| CTATGTCATTTGAAATGAAA+TGG | 0.449117 | 3.3:-85691839 | None:intergenic |
| TCTGTGTTTGGTTCTCCACC+AGG | 0.450591 | 3.3:+85692404 | MS.gene012836:CDS |
| GAACTTTGAATTCGAACATT+CGG | 0.452223 | 3.3:-85691929 | None:intergenic |
| TCTATGGAGAGGGTGGAATC+AGG | 0.458742 | 3.3:+85692464 | MS.gene012836:CDS |
| CTTAAACGATGGTGTTGCTT+CGG | 0.462081 | 3.3:+85692532 | MS.gene012836:CDS |
| AGCAAACTCGTCGCCGGCAA+AGG | 0.462993 | 3.3:-85692184 | None:intergenic |
| AGTCTTCCATCAAACTATGA+AGG | 0.470405 | 3.3:+85692437 | MS.gene012836:CDS |
| GATTCTTGCCACTTTGCTCA+TGG | 0.472931 | 3.3:+85692101 | MS.gene012836:CDS |
| TCCTGATATTGGATGGGTTG+CGG | 0.482606 | 3.3:+85692562 | MS.gene012836:CDS |
| CCCTATTCCTGATATTGGAT+GGG | 0.486365 | 3.3:+85692556 | MS.gene012836:CDS |
| TGTCCTAATTTGCGAAACTC+CGG | 0.493268 | 3.3:-85692065 | None:intergenic |
| ACCTCGATACGGTGTCCCTC+CGG | 0.499369 | 3.3:+85692307 | MS.gene012836:CDS |
| GGAGAATCAAGAACTGAAGT+AGG | 0.502308 | 3.3:-85692275 | None:intergenic |
| GTCATTTGAAATGAAATGGT+TGG | 0.505715 | 3.3:-85691835 | None:intergenic |
| GCAAACTCGTCGCCGGCAAA+GGG | 0.507995 | 3.3:-85692183 | None:intergenic |
| GAAATGAAATGGTTGGAGAA+TGG | 0.518175 | 3.3:-85691828 | None:intergenic |
| ACTAATTCCCTCACGTTCAC+CGG | 0.518657 | 3.3:-85692326 | None:intergenic |
| TGAGACACGGAGTTGATCAA+TGG | 0.519658 | 3.3:-85692219 | None:intergenic |
| CTACTCCGGCAATCCTTGCC+CGG | 0.523473 | 3.3:+85692046 | MS.gene012836:CDS |
| ACAGAACCCATCTGAGATAC+CGG | 0.527743 | 3.3:-85692386 | None:intergenic |
| ACAAAGCTGAGTTCTGTAAC+GGG | 0.529200 | 3.3:-85692150 | None:intergenic |
| ATGAAGGGGTTTCTATGGAG+AGG | 0.530332 | 3.3:+85692453 | MS.gene012836:CDS |
| AAAGTGGCAAGAATCACCTT+TGG | 0.537660 | 3.3:-85692093 | None:intergenic |
| ATGGAGTCCGGTATCTCAGA+TGG | 0.538705 | 3.3:+85692379 | MS.gene012836:CDS |
| GTCCTAATTTGCGAAACTCC+GGG | 0.542282 | 3.3:-85692064 | None:intergenic |
| GTCTTCCATCAAACTATGAA+GGG | 0.551277 | 3.3:+85692438 | MS.gene012836:CDS |
| CAAACCTTAAAATCCCTGAA+TGG | 0.551949 | 3.3:+85691781 | MS.gene012836:CDS |
| GGGAATTAGTTGGCTTCATG+AGG | 0.558865 | 3.3:+85692339 | MS.gene012836:CDS |
| AATTTGCGAAACTCCGGGCA+AGG | 0.560424 | 3.3:-85692059 | None:intergenic |
| ATTGGTCTGTTGAGAAAACA+TGG | 0.569270 | 3.3:-85691905 | None:intergenic |
| ACACCGTATCGAGGTTTCCT+CGG | 0.574430 | 3.3:-85692299 | None:intergenic |
| TAGGGTTGATGAATGGAGTC+CGG | 0.576489 | 3.3:+85692367 | MS.gene012836:CDS |
| TACAAAGCTGAGTTCTGTAA+CGG | 0.577054 | 3.3:-85692151 | None:intergenic |
| AGGGGTTTCTATGGAGAGGG+TGG | 0.581223 | 3.3:+85692457 | MS.gene012836:CDS |
| GTGTCCCTCCGGTGAACGTG+AGG | 0.581697 | 3.3:+85692318 | MS.gene012836:CDS |
| CAAAGAAGCAAACTCGTCGC+CGG | 0.584023 | 3.3:-85692190 | None:intergenic |
| GGTAGATTGAACTTAAACGA+TGG | 0.584454 | 3.3:+85692521 | MS.gene012836:CDS |
| GTGAACGTGAGGGAATTAGT+TGG | 0.588119 | 3.3:+85692329 | MS.gene012836:CDS |
| AACGTGGTAGGTCTCATGAC+TGG | 0.591872 | 3.3:+85691961 | MS.gene012836:CDS |
| TCTGTTGAGAAAACATGGAT+TGG | 0.594271 | 3.3:-85691900 | None:intergenic |
| GGAGTGTTAGGGTTGATGAA+TGG | 0.595988 | 3.3:+85692360 | MS.gene012836:CDS |
| AAATTAGGACACTGCACCAA+AGG | 0.596122 | 3.3:+85692077 | MS.gene012836:CDS |
| TTCGAAAATGCCAACGTGGT+AGG | 0.602152 | 3.3:+85691949 | MS.gene012836:CDS |
| AGCTGAGTTCTGTAACGGGA+AGG | 0.612629 | 3.3:-85692146 | None:intergenic |
| GTGTTTGGTTCTCCACCAGG+TGG | 0.617183 | 3.3:+85692407 | MS.gene012836:CDS |
| TGGAGTCCGGTATCTCAGAT+GGG | 0.620816 | 3.3:+85692380 | MS.gene012836:CDS |
| TCTTCCATCAAACTATGAAG+GGG | 0.627249 | 3.3:+85692439 | MS.gene012836:CDS |
| ATTCCCTCACGTTCACCGGA+GGG | 0.629594 | 3.3:-85692322 | None:intergenic |
| CCTCCGAGGAAACCTCGATA+CGG | 0.630315 | 3.3:+85692296 | MS.gene012836:CDS |
| AGAACTCAGCTTTGTAACGA+CGG | 0.632022 | 3.3:+85692158 | MS.gene012836:CDS |
| GTGAAGCGTTATTTGAGACA+CGG | 0.632246 | 3.3:-85692232 | None:intergenic |
| CAGTTCTTGATTCTCCTCCG+AGG | 0.634516 | 3.3:+85692282 | MS.gene012836:CDS |
| AATTCCCTCACGTTCACCGG+AGG | 0.638441 | 3.3:-85692323 | None:intergenic |
| GATTGTCCATACTCTCATCC+CGG | 0.639508 | 3.3:+85691987 | MS.gene012836:CDS |
| TGAAGGGGTTTCTATGGAGA+GGG | 0.646493 | 3.3:+85692454 | MS.gene012836:CDS |
| TGTCCCTCCGGTGAACGTGA+GGG | 0.657063 | 3.3:+85692319 | MS.gene012836:CDS |
| TGGTAGGTCTCATGACTGGA+CGG | 0.659097 | 3.3:+85691965 | MS.gene012836:CDS |
| ACCGGAGGGACACCGTATCG+AGG | 0.671631 | 3.3:-85692308 | None:intergenic |
| AGTCATGAGACCTACCACGT+TGG | 0.672854 | 3.3:-85691959 | None:intergenic |
| ATGGAACACAACACAATACG+AGG | 0.674097 | 3.3:+85691800 | MS.gene012836:CDS |
| CCGTATCGAGGTTTCCTCGG+AGG | 0.710192 | 3.3:-85692296 | None:intergenic |
| AAAGTTCGAAAATGCCAACG+TGG | 0.760484 | 3.3:+85691945 | MS.gene012836:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACCAAATTTTGCATAGATTT+TGG | - | chr3.3:85692504-85692523 | None:intergenic | 25.0% |
| !! | CTATGTCATTTGAAATGAAA+TGG | - | chr3.3:85691842-85691861 | None:intergenic | 25.0% |
| GAACTTTGAATTCGAACATT+CGG | - | chr3.3:85691932-85691951 | None:intergenic | 30.0% | |
| GCCAAAATCTATGCAAAATT+TGG | + | chr3.3:85692500-85692519 | MS.gene012836:CDS | 30.0% | |
| ! | GTCATTTGAAATGAAATGGT+TGG | - | chr3.3:85691838-85691857 | None:intergenic | 30.0% |
| AAACTATGAAGGGGTTTCTA+TGG | + | chr3.3:85692448-85692467 | MS.gene012836:CDS | 35.0% | |
| AGTCTTCCATCAAACTATGA+AGG | + | chr3.3:85692437-85692456 | MS.gene012836:CDS | 35.0% | |
| ATTGTGTTGTGTTCCATTCA+GGG | - | chr3.3:85691797-85691816 | None:intergenic | 35.0% | |
| CAAACCTTAAAATCCCTGAA+TGG | + | chr3.3:85691781-85691800 | MS.gene012836:CDS | 35.0% | |
| CCTCAAAAATACAACTACTC+CGG | + | chr3.3:85692032-85692051 | MS.gene012836:CDS | 35.0% | |
| GAAATGAAATGGTTGGAGAA+TGG | - | chr3.3:85691831-85691850 | None:intergenic | 35.0% | |
| GGAGATGAAACAAATGATTC+TGG | - | chr3.3:85692257-85692276 | None:intergenic | 35.0% | |
| GGTAGATTGAACTTAAACGA+TGG | + | chr3.3:85692521-85692540 | MS.gene012836:CDS | 35.0% | |
| GTCTTCCATCAAACTATGAA+GGG | + | chr3.3:85692438-85692457 | MS.gene012836:CDS | 35.0% | |
| TACAAAGCTGAGTTCTGTAA+CGG | - | chr3.3:85692154-85692173 | None:intergenic | 35.0% | |
| TATTGTGTTGTGTTCCATTC+AGG | - | chr3.3:85691798-85691817 | None:intergenic | 35.0% | |
| TCTGTTGAGAAAACATGGAT+TGG | - | chr3.3:85691903-85691922 | None:intergenic | 35.0% | |
| TCTTCCATCAAACTATGAAG+GGG | + | chr3.3:85692439-85692458 | MS.gene012836:CDS | 35.0% | |
| TGAATTCGAACATTCGGAAT+TGG | - | chr3.3:85691926-85691945 | None:intergenic | 35.0% | |
| ! | ATTGGTCTGTTGAGAAAACA+TGG | - | chr3.3:85691908-85691927 | None:intergenic | 35.0% |
| ! | TGTTCCATTCAGGGATTTTA+AGG | - | chr3.3:85691788-85691807 | None:intergenic | 35.0% |
| !! | CGGAGTAGTTGTATTTTTGA+GGG | - | chr3.3:85692034-85692053 | None:intergenic | 35.0% |
| !!! | CATTCAGGGATTTTAAGGTT+TGG | - | chr3.3:85691783-85691802 | None:intergenic | 35.0% |
| AAAGTGGCAAGAATCACCTT+TGG | - | chr3.3:85692096-85692115 | None:intergenic | 40.0% | |
| AAAGTTCGAAAATGCCAACG+TGG | + | chr3.3:85691945-85691964 | MS.gene012836:CDS | 40.0% | |
| AAATTAGGACACTGCACCAA+AGG | + | chr3.3:85692077-85692096 | MS.gene012836:CDS | 40.0% | |
| ACAAAGCTGAGTTCTGTAAC+GGG | - | chr3.3:85692153-85692172 | None:intergenic | 40.0% | |
| ACCCATCCAATATCAGGAAT+AGG | - | chr3.3:85692560-85692579 | None:intergenic | 40.0% | |
| ATGGAACACAACACAATACG+AGG | + | chr3.3:85691800-85691819 | MS.gene012836:CDS | 40.0% | |
| CAAAAACACCATGAGCAAAG+TGG | - | chr3.3:85692112-85692131 | None:intergenic | 40.0% | |
| CCCATCCAATATCAGGAATA+GGG | - | chr3.3:85692559-85692578 | None:intergenic | 40.0% | |
| CCCTATTCCTGATATTGGAT+GGG | + | chr3.3:85692556-85692575 | MS.gene012836:CDS | 40.0% | |
| GAAACCCCTTCATAGTTTGA+TGG | - | chr3.3:85692446-85692465 | None:intergenic | 40.0% | |
| GGAGAATCAAGAACTGAAGT+AGG | - | chr3.3:85692278-85692297 | None:intergenic | 40.0% | |
| TCCCTATTCCTGATATTGGA+TGG | + | chr3.3:85692555-85692574 | MS.gene012836:CDS | 40.0% | |
| ! | AGAACTCAGCTTTGTAACGA+CGG | + | chr3.3:85692158-85692177 | MS.gene012836:CDS | 40.0% |
| ! | GTGAAGCGTTATTTGAGACA+CGG | - | chr3.3:85692235-85692254 | None:intergenic | 40.0% |
| ! | TGTCCTAATTTGCGAAACTC+CGG | - | chr3.3:85692068-85692087 | None:intergenic | 40.0% |
| !! | CCGGAGTAGTTGTATTTTTG+AGG | - | chr3.3:85692035-85692054 | None:intergenic | 40.0% |
| !! | CTCATGGTGTTTTTGAATGC+TGG | + | chr3.3:85692117-85692136 | MS.gene012836:CDS | 40.0% |
| !! | CTTAAACGATGGTGTTGCTT+CGG | + | chr3.3:85692532-85692551 | MS.gene012836:CDS | 40.0% |
| !! | TGTATTTTTGAGGGTCTCTC+CGG | - | chr3.3:85692025-85692044 | None:intergenic | 40.0% |
| ACTAATTCCCTCACGTTCAC+CGG | - | chr3.3:85692329-85692348 | None:intergenic | 45.0% | |
| AGACTCAAAAAACCACCTGG+TGG | - | chr3.3:85692422-85692441 | None:intergenic | 45.0% | |
| ATGAAGGGGTTTCTATGGAG+AGG | + | chr3.3:85692453-85692472 | MS.gene012836:CDS | 45.0% | |
| GATTGTCCATACTCTCATCC+CGG | + | chr3.3:85691987-85692006 | MS.gene012836:CDS | 45.0% | |
| GGAAGACTCAAAAAACCACC+TGG | - | chr3.3:85692425-85692444 | None:intergenic | 45.0% | |
| GTGAACGTGAGGGAATTAGT+TGG | + | chr3.3:85692329-85692348 | MS.gene012836:CDS | 45.0% | |
| TCGGTCCCTATTCCTGATAT+TGG | + | chr3.3:85692551-85692570 | MS.gene012836:CDS | 45.0% | |
| TGAAGGGGTTTCTATGGAGA+GGG | + | chr3.3:85692454-85692473 | MS.gene012836:CDS | 45.0% | |
| TTCGAAAATGCCAACGTGGT+AGG | + | chr3.3:85691949-85691968 | MS.gene012836:CDS | 45.0% | |
| ! | ACAGAACCCATCTGAGATAC+CGG | - | chr3.3:85692389-85692408 | None:intergenic | 45.0% |
| ! | GGGAATTAGTTGGCTTCATG+AGG | + | chr3.3:85692339-85692358 | MS.gene012836:CDS | 45.0% |
| ! | GTCCTAATTTGCGAAACTCC+GGG | - | chr3.3:85692067-85692086 | None:intergenic | 45.0% |
| ! | TCTCAGATGGGTTCTGTGTT+TGG | + | chr3.3:85692392-85692411 | MS.gene012836:CDS | 45.0% |
| ! | TGAGACACGGAGTTGATCAA+TGG | - | chr3.3:85692222-85692241 | None:intergenic | 45.0% |
| !! | GATTCTTGCCACTTTGCTCA+TGG | + | chr3.3:85692101-85692120 | MS.gene012836:CDS | 45.0% |
| !! | GGAGTGTTAGGGTTGATGAA+TGG | + | chr3.3:85692360-85692379 | MS.gene012836:CDS | 45.0% |
| !! | TAGGGTTGATGAATGGAGTC+CGG | + | chr3.3:85692367-85692386 | MS.gene012836:CDS | 45.0% |
| !! | TCCTGATATTGGATGGGTTG+CGG | + | chr3.3:85692562-85692581 | MS.gene012836:CDS | 45.0% |
| !! | TGGCTTCATGAGGAGTGTTA+GGG | + | chr3.3:85692349-85692368 | MS.gene012836:CDS | 45.0% |
| !! | TTGGCTTCATGAGGAGTGTT+AGG | + | chr3.3:85692348-85692367 | MS.gene012836:CDS | 45.0% |
| AACGTGGTAGGTCTCATGAC+TGG | + | chr3.3:85691961-85691980 | MS.gene012836:CDS | 50.0% | |
| AATTTGCGAAACTCCGGGCA+AGG | - | chr3.3:85692062-85692081 | None:intergenic | 50.0% | |
| ACACCGTATCGAGGTTTCCT+CGG | - | chr3.3:85692302-85692321 | None:intergenic | 50.0% | |
| AGTCATGAGACCTACCACGT+TGG | - | chr3.3:85691962-85691981 | None:intergenic | 50.0% | |
| ATGGAGTCCGGTATCTCAGA+TGG | + | chr3.3:85692379-85692398 | MS.gene012836:CDS | 50.0% | |
| CAAAGAAGCAAACTCGTCGC+CGG | - | chr3.3:85692193-85692212 | None:intergenic | 50.0% | |
| CAGTTCTTGATTCTCCTCCG+AGG | + | chr3.3:85692282-85692301 | MS.gene012836:CDS | 50.0% | |
| TCCGCAACCCATCCAATATC+AGG | - | chr3.3:85692566-85692585 | None:intergenic | 50.0% | |
| TCTATGGAGAGGGTGGAATC+AGG | + | chr3.3:85692464-85692483 | MS.gene012836:CDS | 50.0% | |
| TGCCCGGAGTTTCGCAAATT+AGG | + | chr3.3:85692062-85692081 | MS.gene012836:CDS | 50.0% | |
| TGGAGTCCGGTATCTCAGAT+GGG | + | chr3.3:85692380-85692399 | MS.gene012836:CDS | 50.0% | |
| TGGTAGGTCTCATGACTGGA+CGG | + | chr3.3:85691965-85691984 | MS.gene012836:CDS | 50.0% | |
| ! | AGCTGAGTTCTGTAACGGGA+AGG | - | chr3.3:85692149-85692168 | None:intergenic | 50.0% |
| ! | TTTTCGCCGGGATGAGAGTA+TGG | - | chr3.3:85691996-85692015 | None:intergenic | 50.0% |
| !! | TCTGTGTTTGGTTCTCCACC+AGG | + | chr3.3:85692404-85692423 | MS.gene012836:CDS | 50.0% |
| AAACTCCGGGCAAGGATTGC+CGG | - | chr3.3:85692054-85692073 | None:intergenic | 55.0% | |
| AATTCCCTCACGTTCACCGG+AGG | - | chr3.3:85692326-85692345 | None:intergenic | 55.0% | |
| AGGGGTTTCTATGGAGAGGG+TGG | + | chr3.3:85692457-85692476 | MS.gene012836:CDS | 55.0% | |
| ATTCCCTCACGTTCACCGGA+GGG | - | chr3.3:85692325-85692344 | None:intergenic | 55.0% | |
| CCTCCGAGGAAACCTCGATA+CGG | + | chr3.3:85692296-85692315 | MS.gene012836:CDS | 55.0% | |
| GTAACGACGGAACCCTTTGC+CGG | + | chr3.3:85692171-85692190 | MS.gene012836:CDS | 55.0% | |
| !! | GTGTTTGGTTCTCCACCAGG+TGG | + | chr3.3:85692407-85692426 | MS.gene012836:CDS | 55.0% |
| ACCTCGATACGGTGTCCCTC+CGG | + | chr3.3:85692307-85692326 | MS.gene012836:CDS | 60.0% | |
| AGCAAACTCGTCGCCGGCAA+AGG | - | chr3.3:85692187-85692206 | None:intergenic | 60.0% | |
| ATCCCGGCGAAAAAGCTCGC+CGG | + | chr3.3:85692003-85692022 | MS.gene012836:CDS | 60.0% | |
| CCGTATCGAGGTTTCCTCGG+AGG | - | chr3.3:85692299-85692318 | None:intergenic | 60.0% | |
| CTACTCCGGCAATCCTTGCC+CGG | + | chr3.3:85692046-85692065 | MS.gene012836:CDS | 60.0% | |
| GCAAACTCGTCGCCGGCAAA+GGG | - | chr3.3:85692186-85692205 | None:intergenic | 60.0% | |
| TGTCCCTCCGGTGAACGTGA+GGG | + | chr3.3:85692319-85692338 | MS.gene012836:CDS | 60.0% | |
| !!! | TCTCCGGCGAGCTTTTTCGC+CGG | - | chr3.3:85692009-85692028 | None:intergenic | 60.0% |
| ACCGGAGGGACACCGTATCG+AGG | - | chr3.3:85692311-85692330 | None:intergenic | 65.0% | |
| GTGTCCCTCCGGTGAACGTG+AGG | + | chr3.3:85692318-85692337 | MS.gene012836:CDS | 65.0% | |
| !!! | CTCCGGCGAGCTTTTTCGCC+GGG | - | chr3.3:85692008-85692027 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 85691768 | 85692598 | 85691768 | ID=MS.gene012836 |
| chr3.3 | mRNA | 85691768 | 85692598 | 85691768 | ID=MS.gene012836.t1;Parent=MS.gene012836 |
| chr3.3 | exon | 85691768 | 85692598 | 85691768 | ID=MS.gene012836.t1.exon1;Parent=MS.gene012836.t1 |
| chr3.3 | CDS | 85691768 | 85692598 | 85691768 | ID=cds.MS.gene012836.t1;Parent=MS.gene012836.t1 |
| Gene Sequence |
| Protein sequence |
