AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01287

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01287.t1 MTR_2g010790 89.647 425 34 4 1 421 1 419 0.0 665
MS.gene01287.t1 MTR_4g109950 54.430 158 65 4 235 390 150 302 1.77e-39 144
MS.gene01287.t1 MTR_3g070120 35.793 271 142 8 155 407 106 362 9.59e-33 127
MS.gene01287.t1 MTR_7g114600 30.921 152 83 4 153 293 68 208 1.46e-12 69.3
MS.gene01287.t1 MTR_4g109910 35.948 153 40 4 235 386 48 143 1.87e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01287.t1 AT1G61730 32.333 433 208 16 9 419 3 372 4.67e-28 114
MS.gene01287.t1 AT4G00390 31.034 406 212 14 16 409 6 355 3.90e-22 97.4
MS.gene01287.t1 AT1G11510 30.295 373 188 15 59 407 15 339 3.22e-20 91.7
MS.gene01287.t1 AT1G11510 29.477 363 175 13 59 407 15 310 6.35e-18 84.7
MS.gene01287.t1 AT4G25210 26.567 335 182 11 111 414 63 364 1.11e-16 81.6
MS.gene01287.t1 AT1G66420 36.090 133 69 4 161 289 53 173 2.49e-14 73.6
MS.gene01287.t1 AT2G01370 31.214 173 95 5 130 288 7 169 1.99e-13 70.5
MS.gene01287.t1 AT1G44810 26.923 286 126 9 8 289 3 209 2.16e-13 70.9
MS.gene01287.t1 AT4G01260 29.433 282 146 9 158 411 57 313 3.54e-12 67.4
MS.gene01287.t1 AT2G25650 35.714 140 72 6 208 336 67 199 1.90e-11 65.9
MS.gene01287.t1 AT5G14280 28.936 235 134 8 208 412 63 294 9.15e-11 63.2

Find 114 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGGCTTGGGCTTGGACT+TGG 0.123490 2.2:+70746189 None:intergenic
CTTGGGCTTGGACTTGGGTT+TGG 0.137721 2.2:+70746195 None:intergenic
GAAGCAAGTGGTTTAACTTT+AGG 0.199493 2.2:+70746233 None:intergenic
ATTGGGCTTGGGCTTGGGCT+TGG 0.201008 2.2:+70746183 None:intergenic
TTGGGCTTGGACTTGGGTTT+GGG 0.211588 2.2:+70746196 None:intergenic
GATTCAGATTCAGCGGGTTT+AGG 0.217235 2.2:+70746338 None:intergenic
AAGCAAGTGGTTTAACTTTA+GGG 0.240022 2.2:+70746234 None:intergenic
CAAGAAGAAATCAAGCAAAT+AGG 0.257807 2.2:-70745364 None:intergenic
GAGTTGATTGGGCTTGGGCT+TGG 0.262442 2.2:+70746177 None:intergenic
TTGGGCTTGGGCTTGGACTT+GGG 0.274782 2.2:+70746190 None:intergenic
GCACCGGAGTTGATTGGGCT+TGG 0.275880 2.2:+70746171 None:intergenic
AGTTGATTGGGCTTGGGCTT+GGG 0.282116 2.2:+70746178 None:intergenic
ATTCAGATTCAGCGGGTTTA+GGG 0.293343 2.2:+70746339 None:intergenic
TGAATCGCGCTGAGGTGGTT+AGG 0.312947 2.2:-70745416 MS.gene01287:CDS
CACCGGAGTTGATTGGGCTT+GGG 0.331565 2.2:+70746172 None:intergenic
TTCTTCGTTGACTACTTTGT+CGG 0.338007 2.2:+70746508 None:intergenic
GTGGGTTCCGATTTCTGTTC+CGG 0.351302 2.2:+70746269 None:intergenic
TTGTGATTCTCAAAGGGCTT+GGG 0.351413 2.2:-70745965 MS.gene01287:CDS
GGCACGCTTAGTTCCGGACT+TGG 0.351838 2.2:+70746145 None:intergenic
GTCAGATAGGGTTGAGTTGG+AGG 0.367989 2.2:-70745481 MS.gene01287:CDS
TGCTCTCTTATCATGAGCTT+TGG 0.370081 2.2:+70745788 None:intergenic
GCAGACTAGATTGGCATTGC+AGG 0.370825 2.2:-70745391 MS.gene01287:CDS
TCAGAATCCGGTTCTGAATC+TGG 0.376206 2.2:-70746311 MS.gene01287:CDS
AAGAAGAAATCAAGCAAATA+GGG 0.379593 2.2:-70745363 None:intergenic
AGTGGTTTAACTTTAGGGTT+AGG 0.384389 2.2:+70746239 None:intergenic
TTCGGCGGCACGCTTAGTTC+CGG 0.394238 2.2:+70746139 None:intergenic
TGGTTGGCACCGGAGTTGAT+TGG 0.408980 2.2:+70746165 None:intergenic
TTCTGAACCGGAACAGAAAT+CGG 0.410111 2.2:-70746276 MS.gene01287:CDS
GCGGGTTTAGGGGTAGAGAT+AGG 0.413172 2.2:+70746350 None:intergenic
CTTGTGATTCTCAAAGGGCT+TGG 0.413788 2.2:-70745966 MS.gene01287:CDS
GGTTGGCACCGGAGTTGATT+GGG 0.414661 2.2:+70746166 None:intergenic
TCTCTTCAATTGCTGAGCAT+TGG 0.418880 2.2:+70745857 None:intergenic
GAATCGCGCTGAGGTGGTTA+GGG 0.419146 2.2:-70745415 MS.gene01287:CDS
CTCGTCGGAGGAAGAGGCGG+TGG 0.434145 2.2:+70746559 None:intergenic
GGGGTAGAGATAGGAGTAGA+AGG 0.435130 2.2:+70746359 None:intergenic
TCTGAATCCGGCTCAGAATC+CGG 0.447335 2.2:-70746323 MS.gene01287:CDS
ATCGTTTCCAGTGTTACTTT+CGG 0.449680 2.2:+70746121 None:intergenic
CGCTTAGTTCCGGACTTGGT+TGG 0.450754 2.2:+70746149 None:intergenic
TCGGAGGAAGAGGCGGTGGG+TGG 0.451878 2.2:+70746563 None:intergenic
TAAGAATGAAAGTGGAAAAG+TGG 0.453012 2.2:-70745619 MS.gene01287:CDS
TTCGGTTCCAGATTCAGAAC+CGG 0.454128 2.2:+70746304 None:intergenic
AACCGAATCTGATTCTGAAC+CGG 0.455116 2.2:-70746288 MS.gene01287:CDS
TCCATCTCCTTCTTCTTCTG+AGG 0.458431 2.2:+70746472 None:intergenic
GGAGAGGTGGAAGAAGTTGC+AGG 0.459564 2.2:-70745460 MS.gene01287:CDS
GGTTTAACTTTAGGGTTAGG+AGG 0.459566 2.2:+70746242 None:intergenic
TTCCGGTTCAGAATCAGATT+CGG 0.461387 2.2:+70746286 None:intergenic
AAGGAAGCAGCTGCATTTCA+CGG 0.465241 2.2:-70745909 MS.gene01287:CDS
AATCACAAAGAGTGCTAAGA+AGG 0.466107 2.2:-70745694 MS.gene01287:CDS
TTGATCCTCGTCGGAGGAAG+AGG 0.466920 2.2:+70746553 None:intergenic
ACTCCGGTGCCAACCAAGTC+CGG 0.469333 2.2:-70746158 MS.gene01287:CDS
ATAGTTACTAAGAATGAAAG+TGG 0.473928 2.2:-70745627 MS.gene01287:CDS
GGAGTCAGATAGGGTTGAGT+TGG 0.474759 2.2:-70745484 MS.gene01287:CDS
TGTGATTCTCAAAGGGCTTG+GGG 0.482044 2.2:-70745964 MS.gene01287:CDS
GTTCCGGACTTGGTTGGCAC+CGG 0.486396 2.2:+70746155 None:intergenic
TTAACTTTAGGGTTAGGAGG+AGG 0.489961 2.2:+70746245 None:intergenic
GGGTATAGCTGTGCTGGATA+AGG 0.490129 2.2:-70745538 MS.gene01287:CDS
GGGTTGAGTTGGAGGAGAGG+TGG 0.490174 2.2:-70745473 MS.gene01287:CDS
GAGATAGGAGTAGAAGGAGG+AGG 0.494629 2.2:+70746365 None:intergenic
TTCAGAACCGGATTCTGAGC+CGG 0.501712 2.2:+70746316 None:intergenic
ACGAGCTTGTGATTCTCAAA+GGG 0.508640 2.2:-70745971 MS.gene01287:CDS
TCTAAGGAAGCTGAAGAAAA+CGG 0.508657 2.2:-70745732 MS.gene01287:CDS
AAGAAAACCACCGGTGGTGG+TGG 0.509946 2.2:-70746083 MS.gene01287:CDS
AAATGGTGGTTCTGCTAGGA+AGG 0.513798 2.2:-70745658 MS.gene01287:CDS
AAGAAGAAAACCACCGGTGG+TGG 0.515031 2.2:-70746086 MS.gene01287:CDS
GAAGTTGCAGGCTGCCGAGA+TGG 0.515486 2.2:-70745448 MS.gene01287:CDS
ATAGGGTTGAGTTGGAGGAG+AGG 0.516403 2.2:-70745476 MS.gene01287:CDS
GGTTAGGGAGCAGACTAGAT+TGG 0.517395 2.2:-70745400 MS.gene01287:CDS
AGATAGGAGTAGAAGGAGGA+GGG 0.520024 2.2:+70746366 None:intergenic
GAAGGAGATGGAGAAGAAGA+AGG 0.521213 2.2:-70746461 MS.gene01287:CDS
GACGAGCTTGTGATTCTCAA+AGG 0.523580 2.2:-70745972 MS.gene01287:CDS
AAACCCGCTGAATCTGAATC+CGG 0.523805 2.2:-70746335 MS.gene01287:CDS
CGGAGGAAGAGGCGGTGGGT+GGG 0.524036 2.2:+70746564 None:intergenic
TCGTTGACTACTTTGTCGGC+TGG 0.525334 2.2:+70746512 None:intergenic
GTTAAATTTGATGAGGCTGC+GGG 0.528643 2.2:-70745558 MS.gene01287:CDS
TGCTCAGCAATTGAAGAGAA+AGG 0.529680 2.2:-70745853 MS.gene01287:CDS
GGCTGCGGGTATAGCTGTGC+TGG 0.534970 2.2:-70745544 MS.gene01287:CDS
GGTTAAATTTGATGAGGCTG+CGG 0.538193 2.2:-70745559 MS.gene01287:CDS
ATCATCAGAACCACCACCAC+CGG 0.552134 2.2:+70746073 None:intergenic
CAATTGAAGAGAAAGGTTCG+TGG 0.552666 2.2:-70745846 MS.gene01287:CDS
TGATGAGAATGAGGCGGAGG+AGG 0.559810 2.2:-70746054 MS.gene01287:CDS
GATTCATCCTCAGAAGAAGA+AGG 0.562296 2.2:-70746479 MS.gene01287:CDS
AATGCAGCTGCTTCCTTCAG+CGG 0.564243 2.2:+70745915 None:intergenic
TTAGGGTTAGGAGGAGGAGT+GGG 0.566966 2.2:+70746251 None:intergenic
GAGCCGGATTCAGATTCAGC+GGG 0.569467 2.2:+70746332 None:intergenic
TGATGATGAGAATGAGGCGG+AGG 0.577141 2.2:-70746057 MS.gene01287:CDS
TCCTCAGAAGAAGAAGGAGA+TGG 0.578512 2.2:-70746473 MS.gene01287:CDS
AAAAGCGGTTTGGAATTGAT+GGG 0.579284 2.2:-70745507 MS.gene01287:CDS
TTCATGGGCTTTGAAGCAAG+TGG 0.579960 2.2:+70746221 None:intergenic
GAGGAGGATGTGAAATTGAC+TGG 0.583042 2.2:-70746038 MS.gene01287:CDS
TCGTCGGAGGAAGAGGCGGT+GGG 0.588753 2.2:+70746560 None:intergenic
TGAAGGTGGTTGATCCTCGT+CGG 0.589745 2.2:+70746544 None:intergenic
GAAAGTGGAAAAGTGGAAAG+TGG 0.593025 2.2:-70745612 MS.gene01287:CDS
AGCCCAAGCCCAATCAACTC+CGG 0.593390 2.2:-70746174 MS.gene01287:CDS
TTTAGGGTTAGGAGGAGGAG+TGG 0.598971 2.2:+70746250 None:intergenic
ATCCTCGTCGGAGGAAGAGG+CGG 0.601599 2.2:+70746556 None:intergenic
CGTGCCGCCGAAAGTAACAC+TGG 0.604597 2.2:-70746128 MS.gene01287:CDS
CACCGCCTCTTCCTCCGACG+AGG 0.604984 2.2:-70746558 MS.gene01287:CDS
GGAAAAGTGGAAAGTGGTGT+TGG 0.606211 2.2:-70745606 MS.gene01287:CDS
AAAGCGGTTTGGAATTGATG+GGG 0.609458 2.2:-70745506 MS.gene01287:CDS
GACTGGAAAGGATCCGCTGA+AGG 0.611489 2.2:-70745928 MS.gene01287:CDS
GTGGGTCGTCGACGAGAGCG+AGG 0.630460 2.2:+70746582 None:intergenic
TGGTTCTGATGATGAGAATG+AGG 0.631876 2.2:-70746063 MS.gene01287:CDS
CGTTCCAAGAAGAAAACCAC+CGG 0.642479 2.2:-70746092 MS.gene01287:CDS
GTTTCCAGTGTTACTTTCGG+CGG 0.643844 2.2:+70746124 None:intergenic
TGAGCCGGATTCAGATTCAG+CGG 0.650032 2.2:+70746331 None:intergenic
TTCAGATTCAGCGGGTTTAG+GGG 0.652803 2.2:+70746340 None:intergenic
GTAGAGATAGGAGTAGAAGG+AGG 0.653610 2.2:+70746362 None:intergenic
CGAACTGGTTAAATTTGATG+AGG 0.653994 2.2:-70745565 MS.gene01287:CDS
ATCAGAACCACCACCACCGG+TGG 0.666036 2.2:+70746076 None:intergenic
AGGTGGTTGATCCTCGTCGG+AGG 0.667833 2.2:+70746547 None:intergenic
AAGCGGTTTGGAATTGATGG+GGG 0.669970 2.2:-70745505 MS.gene01287:CDS
GAAGAAATCGATGAAAGCTG+AGG 0.677405 2.2:-70745880 MS.gene01287:CDS
TCCAAGAAGAAAACCACCGG+TGG 0.717568 2.2:-70746089 MS.gene01287:CDS
TTCTGATGATGAGAATGAGG+CGG 0.722855 2.2:-70746060 MS.gene01287:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATAGTTACTAAGAATGAAAG+TGG - chr2.2:70746349-70746368 MS.gene01287:CDS 25.0%
ATTCAAAAACACTTCCATCT+CGG + chr2.2:70746545-70746564 None:intergenic 30.0%
TAAGAATGAAAGTGGAAAAG+TGG - chr2.2:70746357-70746376 MS.gene01287:CDS 30.0%
! AAGCAAGTGGTTTAACTTTA+GGG + chr2.2:70745745-70745764 None:intergenic 30.0%
!! CATTTGATCTTTTCAAGGTT+TGG - chr2.2:70746209-70746228 MS.gene01287:CDS 30.0%
AAGGAAGCTCCTGTTAAAAA+TGG - chr2.2:70746301-70746320 MS.gene01287:CDS 35.0%
CGAACTGGTTAAATTTGATG+AGG - chr2.2:70746411-70746430 MS.gene01287:CDS 35.0%
GATAAGGATGCTACAAAAAG+CGG - chr2.2:70746454-70746473 MS.gene01287:CDS 35.0%
TCTAAGGAAGCTGAAGAAAA+CGG - chr2.2:70746244-70746263 MS.gene01287:CDS 35.0%
TTGGAGCAAAAATGCTTCTA+AGG - chr2.2:70746228-70746247 MS.gene01287:CDS 35.0%
! AAAAAGCGGTTTGGAATTGA+TGG - chr2.2:70746468-70746487 MS.gene01287:CDS 35.0%
! AAAAGCGGTTTGGAATTGAT+GGG - chr2.2:70746469-70746488 MS.gene01287:CDS 35.0%
! GAAGCAAGTGGTTTAACTTT+AGG + chr2.2:70745746-70745765 None:intergenic 35.0%
! TTAAAAATGGTGGTTCTGCT+AGG - chr2.2:70746314-70746333 MS.gene01287:CDS 35.0%
! TTCTTCGTTGACTACTTTGT+CGG + chr2.2:70745471-70745490 None:intergenic 35.0%
!! AATCACAAAGAGTGCTAAGA+AGG - chr2.2:70746282-70746301 MS.gene01287:CDS 35.0%
!! AGTGGTTTAACTTTAGGGTT+AGG + chr2.2:70745740-70745759 None:intergenic 35.0%
!! ATCGTTTCCAGTGTTACTTT+CGG + chr2.2:70745858-70745877 None:intergenic 35.0%
!!! GAGAGCATTTGATCTTTTCA+AGG - chr2.2:70746204-70746223 MS.gene01287:CDS 35.0%
AACCGAATCTGATTCTGAAC+CGG - chr2.2:70745688-70745707 MS.gene01287:CDS 40.0%
ACGAGCTTGTGATTCTCAAA+GGG - chr2.2:70746005-70746024 MS.gene01287:CDS 40.0%
CAATTGAAGAGAAAGGTTCG+TGG - chr2.2:70746130-70746149 MS.gene01287:CDS 40.0%
GAAAGTGGAAAAGTGGAAAG+TGG - chr2.2:70746364-70746383 MS.gene01287:CDS 40.0%
GAAGAAATCGATGAAAGCTG+AGG - chr2.2:70746096-70746115 MS.gene01287:CDS 40.0%
GAAGCTCCTGTTAAAAATGG+TGG - chr2.2:70746304-70746323 MS.gene01287:CDS 40.0%
GATTCATCCTCAGAAGAAGA+AGG - chr2.2:70745497-70745516 MS.gene01287:CDS 40.0%
GGTTAAATTTGATGAGGCTG+CGG - chr2.2:70746417-70746436 MS.gene01287:CDS 40.0%
GTTAAATTTGATGAGGCTGC+GGG - chr2.2:70746418-70746437 MS.gene01287:CDS 40.0%
TCTCTTCAATTGCTGAGCAT+TGG + chr2.2:70746122-70746141 None:intergenic 40.0%
TGCTCAGCAATTGAAGAGAA+AGG - chr2.2:70746123-70746142 MS.gene01287:CDS 40.0%
TGCTCTCTTATCATGAGCTT+TGG + chr2.2:70746191-70746210 None:intergenic 40.0%
TTCCGGTTCAGAATCAGATT+CGG + chr2.2:70745693-70745712 None:intergenic 40.0%
TTCTGAACCGGAACAGAAAT+CGG - chr2.2:70745700-70745719 MS.gene01287:CDS 40.0%
TTGTGATTCTCAAAGGGCTT+GGG - chr2.2:70746011-70746030 MS.gene01287:CDS 40.0%
! AAAGCGGTTTGGAATTGATG+GGG - chr2.2:70746470-70746489 MS.gene01287:CDS 40.0%
! ATTCAGATTCAGCGGGTTTA+GGG + chr2.2:70745640-70745659 None:intergenic 40.0%
! GAGTTTCATTTTGAGCGAAC+TGG - chr2.2:70746396-70746415 MS.gene01287:CDS 40.0%
! TTCTGATGATGAGAATGAGG+CGG - chr2.2:70745916-70745935 MS.gene01287:CDS 40.0%
!! ACTTGGGTTTGGGTTTTCAT+GGG + chr2.2:70745773-70745792 None:intergenic 40.0%
!! CGTTTCTTTTGCTTTGGCTT+TGG + chr2.2:70745374-70745393 None:intergenic 40.0%
!! GCAGAACCACCATTTTTAAC+AGG + chr2.2:70746313-70746332 None:intergenic 40.0%
!! GGTTTAACTTTAGGGTTAGG+AGG + chr2.2:70745737-70745756 None:intergenic 40.0%
!! TGGTTCTGATGATGAGAATG+AGG - chr2.2:70745913-70745932 MS.gene01287:CDS 40.0%
!! TTAACTTTAGGGTTAGGAGG+AGG + chr2.2:70745734-70745753 None:intergenic 40.0%
!!! TACTTTGTCGGCTGGTTTTT+GGG + chr2.2:70745459-70745478 None:intergenic 40.0%
AAACCCGCTGAATCTGAATC+CGG - chr2.2:70745641-70745660 MS.gene01287:CDS 45.0%
AAGGAAGCAGCTGCATTTCA+CGG - chr2.2:70746067-70746086 MS.gene01287:CDS 45.0%
AATTGATGGGGGAGTCAGAT+AGG - chr2.2:70746482-70746501 MS.gene01287:CDS 45.0%
AGATAGGAGTAGAAGGAGGA+GGG + chr2.2:70745613-70745632 None:intergenic 45.0%
ATTGATGGGGGAGTCAGATA+GGG - chr2.2:70746483-70746502 MS.gene01287:CDS 45.0%
CGTTCCAAGAAGAAAACCAC+CGG - chr2.2:70745884-70745903 MS.gene01287:CDS 45.0%
CTTGTGATTCTCAAAGGGCT+TGG - chr2.2:70746010-70746029 MS.gene01287:CDS 45.0%
GAAGGAGATGGAGAAGAAGA+AGG - chr2.2:70745515-70745534 MS.gene01287:CDS 45.0%
GACGAGCTTGTGATTCTCAA+AGG - chr2.2:70746004-70746023 MS.gene01287:CDS 45.0%
GAGGAGGATGTGAAATTGAC+TGG - chr2.2:70745938-70745957 MS.gene01287:CDS 45.0%
GGAAAAGTGGAAAGTGGTGT+TGG - chr2.2:70746370-70746389 MS.gene01287:CDS 45.0%
GGATGCTACAAAAAGCGGTT+TGG - chr2.2:70746459-70746478 MS.gene01287:CDS 45.0%
GTAGAGATAGGAGTAGAAGG+AGG + chr2.2:70745617-70745636 None:intergenic 45.0%
TCCATCTCCTTCTTCTTCTG+AGG + chr2.2:70745507-70745526 None:intergenic 45.0%
TCCTCAGAAGAAGAAGGAGA+TGG - chr2.2:70745503-70745522 MS.gene01287:CDS 45.0%
TGTGATTCTCAAAGGGCTTG+GGG - chr2.2:70746012-70746031 MS.gene01287:CDS 45.0%
TTCGGTTCCAGATTCAGAAC+CGG + chr2.2:70745675-70745694 None:intergenic 45.0%
! AAATGGTGGTTCTGCTAGGA+AGG - chr2.2:70746318-70746337 MS.gene01287:CDS 45.0%
! AAGCGGTTTGGAATTGATGG+GGG - chr2.2:70746471-70746490 MS.gene01287:CDS 45.0%
! AGTAGAAGGAGGAGGGTTTT+TGG + chr2.2:70745606-70745625 None:intergenic 45.0%
! GATTCAGATTCAGCGGGTTT+AGG + chr2.2:70745641-70745660 None:intergenic 45.0%
! TTCAGATTCAGCGGGTTTAG+GGG + chr2.2:70745639-70745658 None:intergenic 45.0%
! TTTTGTGGCGAAGACTGGAA+AGG - chr2.2:70746036-70746055 MS.gene01287:CDS 45.0%
!! AGTGTTTTTGAATCGCGCTG+AGG - chr2.2:70746552-70746571 MS.gene01287:CDS 45.0%
!! GACTTGGGTTTGGGTTTTCA+TGG + chr2.2:70745774-70745793 None:intergenic 45.0%
!! GTTTCCAGTGTTACTTTCGG+CGG + chr2.2:70745855-70745874 None:intergenic 45.0%
!! TCAGAATCCGGTTCTGAATC+TGG - chr2.2:70745665-70745684 MS.gene01287:CDS 45.0%
!! TTCATGGGCTTTGAAGCAAG+TGG + chr2.2:70745758-70745777 None:intergenic 45.0%
!!! CTACTTTGTCGGCTGGTTTT+TGG + chr2.2:70745460-70745479 None:intergenic 45.0%
!!! GCGGGTTTTGAATCTTTCGA+AGG + chr2.2:70745581-70745600 None:intergenic 45.0%
AAGAAGAAAACCACCGGTGG+TGG - chr2.2:70745890-70745909 MS.gene01287:CDS 50.0%
AATGCAGCTGCTTCCTTCAG+CGG + chr2.2:70746064-70746083 None:intergenic 50.0%
AGTTGATTGGGCTTGGGCTT+GGG + chr2.2:70745801-70745820 None:intergenic 50.0%
ATCATCAGAACCACCACCAC+CGG + chr2.2:70745906-70745925 None:intergenic 50.0%
GAGATAGGAGTAGAAGGAGG+AGG + chr2.2:70745614-70745633 None:intergenic 50.0%
GCAGACTAGATTGGCATTGC+AGG - chr2.2:70746585-70746604 MS.gene01287:CDS 50.0%
GGAGTCAGATAGGGTTGAGT+TGG - chr2.2:70746492-70746511 MS.gene01287:CDS 50.0%
GGGGTAGAGATAGGAGTAGA+AGG + chr2.2:70745620-70745639 None:intergenic 50.0%
GGGTATAGCTGTGCTGGATA+AGG - chr2.2:70746438-70746457 MS.gene01287:CDS 50.0%
GGTTAGGGAGCAGACTAGAT+TGG - chr2.2:70746576-70746595 MS.gene01287:CDS 50.0%
GTGGGTTCCGATTTCTGTTC+CGG + chr2.2:70745710-70745729 None:intergenic 50.0%
TCCAAGAAGAAAACCACCGG+TGG - chr2.2:70745887-70745906 MS.gene01287:CDS 50.0%
TCTGAATCCGGCTCAGAATC+CGG - chr2.2:70745653-70745672 MS.gene01287:CDS 50.0%
TGAAGGTGGTTGATCCTCGT+CGG + chr2.2:70745435-70745454 None:intergenic 50.0%
TGAGCCGGATTCAGATTCAG+CGG + chr2.2:70745648-70745667 None:intergenic 50.0%
TTAGGGTTAGGAGGAGGAGT+GGG + chr2.2:70745728-70745747 None:intergenic 50.0%
TTCAGAACCGGATTCTGAGC+CGG + chr2.2:70745663-70745682 None:intergenic 50.0%
TTGGGCTTGGACTTGGGTTT+GGG + chr2.2:70745783-70745802 None:intergenic 50.0%
! ACCACCGGTGGTTTTCTTCT+TGG + chr2.2:70745891-70745910 None:intergenic 50.0%
! CAAAGGGCTTGGGGATTTTG+TGG - chr2.2:70746021-70746040 MS.gene01287:CDS 50.0%
! GTTTTTGAATCGCGCTGAGG+TGG - chr2.2:70746555-70746574 MS.gene01287:CDS 50.0%
! TCGTTGACTACTTTGTCGGC+TGG + chr2.2:70745467-70745486 None:intergenic 50.0%
! TGATGATGAGAATGAGGCGG+AGG - chr2.2:70745919-70745938 MS.gene01287:CDS 50.0%
! TTTAGGGTTAGGAGGAGGAG+TGG + chr2.2:70745729-70745748 None:intergenic 50.0%
!! AGGAGGAGGGTTTTTGGAAG+CGG + chr2.2:70745600-70745619 None:intergenic 50.0%
!! ATAGGGTTGAGTTGGAGGAG+AGG - chr2.2:70746500-70746519 MS.gene01287:CDS 50.0%
!! GCGAGGCGTTTCTTTTGCTT+TGG + chr2.2:70745380-70745399 None:intergenic 50.0%
!! GTCAGATAGGGTTGAGTTGG+AGG - chr2.2:70746495-70746514 MS.gene01287:CDS 50.0%
!!! GCTGGTTTTTGGGTTGAAGG+TGG + chr2.2:70745449-70745468 None:intergenic 50.0%
!!! TCGGCTGGTTTTTGGGTTGA+AGG + chr2.2:70745452-70745471 None:intergenic 50.0%
AGCCCAAGCCCAATCAACTC+CGG - chr2.2:70745802-70745821 MS.gene01287:CDS 55.0%
CTTGGGCTTGGACTTGGGTT+TGG + chr2.2:70745784-70745803 None:intergenic 55.0%
GAATCGCGCTGAGGTGGTTA+GGG - chr2.2:70746561-70746580 MS.gene01287:CDS 55.0%
GACTGGAAAGGATCCGCTGA+AGG - chr2.2:70746048-70746067 MS.gene01287:CDS 55.0%
GAGCCGGATTCAGATTCAGC+GGG + chr2.2:70745647-70745666 None:intergenic 55.0%
GCGGGTTTAGGGGTAGAGAT+AGG + chr2.2:70745629-70745648 None:intergenic 55.0%
GGAGAGGTGGAAGAAGTTGC+AGG - chr2.2:70746516-70746535 MS.gene01287:CDS 55.0%
TGAATCGCGCTGAGGTGGTT+AGG - chr2.2:70746560-70746579 MS.gene01287:CDS 55.0%
TGATGAGAATGAGGCGGAGG+AGG - chr2.2:70745922-70745941 MS.gene01287:CDS 55.0%
TTGATCCTCGTCGGAGGAAG+AGG + chr2.2:70745426-70745445 None:intergenic 55.0%
TTGGGCTTGGGCTTGGACTT+GGG + chr2.2:70745789-70745808 None:intergenic 55.0%
! AAGAAAACCACCGGTGGTGG+TGG - chr2.2:70745893-70745912 MS.gene01287:CDS 55.0%
! CACCGGAGTTGATTGGGCTT+GGG + chr2.2:70745807-70745826 None:intergenic 55.0%
! CGCTTAGTTCCGGACTTGGT+TGG + chr2.2:70745830-70745849 None:intergenic 55.0%
! GAGTTGATTGGGCTTGGGCT+TGG + chr2.2:70745802-70745821 None:intergenic 55.0%
! GGGGATTTTGTGGCGAAGAC+TGG - chr2.2:70746031-70746050 MS.gene01287:CDS 55.0%
! GGTTGGCACCGGAGTTGATT+GGG + chr2.2:70745813-70745832 None:intergenic 55.0%
! TGGTTGGCACCGGAGTTGAT+TGG + chr2.2:70745814-70745833 None:intergenic 55.0%
!! GGAGGAGGGTTTTTGGAAGC+GGG + chr2.2:70745599-70745618 None:intergenic 55.0%
AGGTGGTTGATCCTCGTCGG+AGG + chr2.2:70745432-70745451 None:intergenic 60.0%
ATCAGAACCACCACCACCGG+TGG + chr2.2:70745903-70745922 None:intergenic 60.0%
ATCCTCGTCGGAGGAAGAGG+CGG + chr2.2:70745423-70745442 None:intergenic 60.0%
ATTGGGCTTGGGCTTGGGCT+TGG + chr2.2:70745796-70745815 None:intergenic 60.0%
CGTGCCGCCGAAAGTAACAC+TGG - chr2.2:70745848-70745867 MS.gene01287:CDS 60.0%
CTTGGGCTTGGGCTTGGACT+TGG + chr2.2:70745790-70745809 None:intergenic 60.0%
GAAGTTGCAGGCTGCCGAGA+TGG - chr2.2:70746528-70746547 MS.gene01287:CDS 60.0%
GGCACGCTTAGTTCCGGACT+TGG + chr2.2:70745834-70745853 None:intergenic 60.0%
TTCGGCGGCACGCTTAGTTC+CGG + chr2.2:70745840-70745859 None:intergenic 60.0%
! ACTCCGGTGCCAACCAAGTC+CGG - chr2.2:70745818-70745837 MS.gene01287:CDS 60.0%
! GCACCGGAGTTGATTGGGCT+TGG + chr2.2:70745808-70745827 None:intergenic 60.0%
! GTTCCGGACTTGGTTGGCAC+CGG + chr2.2:70745824-70745843 None:intergenic 60.0%
!! GGGTTGAGTTGGAGGAGAGG+TGG - chr2.2:70746503-70746522 MS.gene01287:CDS 60.0%
GGCTGCGGGTATAGCTGTGC+TGG - chr2.2:70746432-70746451 MS.gene01287:CDS 65.0%
TCGTCGGAGGAAGAGGCGGT+GGG + chr2.2:70745419-70745438 None:intergenic 65.0%
CACCGCCTCTTCCTCCGACG+AGG - chr2.2:70745418-70745437 MS.gene01287:CDS 70.0%
CGGAGGAAGAGGCGGTGGGT+GGG + chr2.2:70745415-70745434 None:intergenic 70.0%
CTCGTCGGAGGAAGAGGCGG+TGG + chr2.2:70745420-70745439 None:intergenic 70.0%
GTGGGTCGTCGACGAGAGCG+AGG + chr2.2:70745397-70745416 None:intergenic 70.0%
TCGGAGGAAGAGGCGGTGGG+TGG + chr2.2:70745416-70745435 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 70745365 70746633 70745365 ID=MS.gene01287
chr2.2 mRNA 70745365 70746633 70745365 ID=MS.gene01287.t1;Parent=MS.gene01287
chr2.2 exon 70745365 70746633 70745365 ID=MS.gene01287.t1.exon1;Parent=MS.gene01287.t1
chr2.2 CDS 70745365 70746633 70745365 ID=cds.MS.gene01287.t1;Parent=MS.gene01287.t1
Gene Sequence

>MS.gene01287

ATGGCGCCAAAGCCAAAGCAAAAGAAACGCCTCGCTCTCGTCGACGACCCACCCACCGCCTCTTCCTCCGACGAGGATCAACCACCTTCAACCCAAAAACCAGCCGACAAAGTAGTCAACGAAGAACATGAAGATTCATCCTCAGAAGAAGAAGGAGATGGAGAAGAAGAAGGTTCTTCATCTGAAGAAGAAGATAATCAAACTCAACAAACTCCTTCGAAAGATTCAAAACCCGCTTCCAAAAACCCTCCTCCTTCTACTCCTATCTCTACCCCTAAACCCGCTGAATCTGAATCCGGCTCAGAATCCGGTTCTGAATCTGGAACCGAATCTGATTCTGAACCGGAACAGAAATCGGAACCCACTCCTCCTCCTAACCCTAAAGTTAAACCACTTGCTTCAAAGCCCATGAAAACCCAAACCCAAGTCCAAGCCCAAGCCCAAGCCCAATCAACTCCGGTGCCAACCAAGTCCGGAACTAAGCGTGCCGCCGAAAGTAACACTGGAAACGATTCAAAACGTTCCAAGAAGAAAACCACCGGTGGTGGTGGTTCTGATGATGAGAATGAGGCGGAGGAGGATGTGAAATTGACTGGTGAAGACTCGAAGAAGAACTTTCAGAGATTGTTTAGTGAAGAAGACGAGCTTGTGATTCTCAAAGGGCTTGGGGATTTTGTGGCGAAGACTGGAAAGGATCCGCTGAAGGAAGCAGCTGCATTTCACGGTTTCGTGAAGAAATCGATGAAAGCTGAGGCCAATGCTCAGCAATTGAAGAGAAAGGTTCGTGGTTTGAAGAAGAAGTTTGAAAGCAGTGACAATTTTACCAAAGCTCATGATAAGAGAGCATTTGATCTTTTCAAGGTTTGGAGCAAAAATGCTTCTAAGGAAGCTGAAGAAAACGGAAAATCTAACGAGAAAATCACAAAGAGTGCTAAGAAGGAAGCTCCTGTTAAAAATGGTGGTTCTGCTAGGAAGGAATTAGCTATAGTTACTAAGAATGAAAGTGGAAAAGTGGAAAGTGGTGTTGGCAAGAGTTTCATTTTGAGCGAACTGGTTAAATTTGATGAGGCTGCGGGTATAGCTGTGCTGGATAAGGATGCTACAAAAAGCGGTTTGGAATTGATGGGGGAGTCAGATAGGGTTGAGTTGGAGGAGAGGTGGAAGAAGTTGCAGGCTGCCGAGATGGAAGTGTTTTTGAATCGCGCTGAGGTGGTTAGGGAGCAGACTAGATTGGCATTGCAGGAACTCAAGAAGAAATCAAGCAAATAG
Protein sequence

>MS.gene01287.t1

MAPKPKQKKRLALVDDPPTASSSDEDQPPSTQKPADKVVNEEHEDSSSEEEGDGEEEGSSSEEEDNQTQQTPSKDSKPASKNPPPSTPISTPKPAESESGSESGSESGTESDSEPEQKSEPTPPPNPKVKPLASKPMKTQTQVQAQAQAQSTPVPTKSGTKRAAESNTGNDSKRSKKKTTGGGGSDDENEAEEDVKLTGEDSKKNFQRLFSEEDELVILKGLGDFVAKTGKDPLKEAAAFHGFVKKSMKAEANAQQLKRKVRGLKKKFESSDNFTKAHDKRAFDLFKVWSKNASKEAEENGKSNEKITKSAKKEAPVKNGGSARKELAIVTKNESGKVESGVGKSFILSELVKFDEAAGIAVLDKDATKSGLELMGESDRVELEERWKKLQAAEMEVFLNRAEVVREQTRLALQELKKKSSK