AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012872

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012872.t1 MTR_7g109640 51.166 643 177 12 4 536 173 788 0.0 558
MS.gene012872.t1 MTR_3g103120 57.672 567 183 10 4 537 292 834 0.0 550
MS.gene012872.t1 MTR_3g103110 48.827 682 183 12 3 537 131 793 0.0 540
MS.gene012872.t1 MTR_5g024390 57.175 439 156 9 108 535 2 419 3.99e-164 473
MS.gene012872.t1 MTR_5g024500 56.492 439 159 9 108 535 2 419 1.91e-161 466
MS.gene012872.t1 MTR_3g103160 84.091 308 27 3 1 308 1 286 5.97e-141 414
MS.gene012872.t1 MTR_3g103160 91.765 170 14 0 374 543 275 444 5.48e-104 320
MS.gene012872.t1 MTR_5g071340 36.296 540 273 15 16 537 600 1086 5.72e-91 302
MS.gene012872.t1 MTR_3g464550 36.759 506 268 13 45 535 540 1008 1.49e-85 287
MS.gene012872.t1 MTR_2g078040 34.234 444 244 10 105 535 758 1166 3.04e-68 239
MS.gene012872.t1 MTR_1g103830 34.129 419 228 8 105 509 602 986 2.98e-61 219
MS.gene012872.t1 MTR_1g072130 32.360 445 269 12 105 542 808 1227 6.83e-61 218
MS.gene012872.t1 MTR_1g068930 26.667 435 218 14 143 523 459 846 4.09e-39 153
MS.gene012872.t1 MTR_1g068930 26.667 435 218 14 143 523 496 883 5.26e-39 152
MS.gene012872.t1 MTR_7g095140 30.897 301 173 8 222 516 13 284 3.20e-37 141
MS.gene012872.t1 MTR_4g099530 27.340 406 243 12 137 535 138 498 2.14e-32 130
MS.gene012872.t1 MTR_1g062330 25.495 455 229 15 143 530 386 797 1.24e-31 130
MS.gene012872.t1 MTR_4g056990 25.054 467 246 14 107 520 188 603 1.38e-31 129
MS.gene012872.t1 MTR_4g050090 25.259 483 230 16 113 519 199 626 1.33e-30 127
MS.gene012872.t1 MTR_7g102610 25.373 469 230 17 135 533 527 945 4.54e-30 125
MS.gene012872.t1 MTR_4g057290 23.820 466 238 12 113 508 94 512 2.98e-25 110
MS.gene012872.t1 MTR_1g062330 24.507 355 160 14 143 432 386 697 1.48e-17 86.7
MS.gene012872.t1 MTR_6g061000 50.000 80 37 1 198 277 25 101 1.64e-17 78.6
MS.gene012872.t1 MTR_2g084425 25.000 192 135 4 347 535 833 1018 5.09e-15 79.0
MS.gene012872.t1 MTR_2g084425 25.208 361 160 13 61 362 416 725 1.98e-13 73.9
MS.gene012872.t1 MTR_2g084425 25.899 278 101 10 143 362 495 725 2.40e-13 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012872.t1 AT5G58610 35.729 501 266 11 66 541 314 783 1.04e-83 278
MS.gene012872.t1 AT5G58610 35.729 501 266 11 66 541 545 1014 1.81e-82 277
MS.gene012872.t1 AT5G58610 35.729 501 266 11 66 541 545 1014 1.81e-82 277
MS.gene012872.t1 AT5G58610 35.729 501 266 11 66 541 545 1014 2.63e-82 278
MS.gene012872.t1 AT5G58610 35.729 501 266 11 66 541 536 1005 3.29e-82 277
MS.gene012872.t1 AT5G58610 35.729 501 266 11 66 541 536 1005 3.89e-82 277
MS.gene012872.t1 AT5G58610 34.608 497 251 12 66 541 536 979 7.02e-75 257
MS.gene012872.t1 AT5G58610 34.608 497 251 12 66 541 536 979 7.44e-75 257
MS.gene012872.t1 AT5G58610 34.932 438 229 11 66 478 545 951 2.45e-66 232
MS.gene012872.t1 AT5G58610 34.932 438 229 11 66 478 536 942 2.56e-66 232
MS.gene012872.t1 AT5G36740 31.034 551 330 13 8 541 438 955 5.15e-66 233
MS.gene012872.t1 AT5G36740 31.034 551 330 13 8 541 438 955 5.15e-66 233
MS.gene012872.t1 AT5G36740 30.590 559 332 14 8 541 285 812 5.21e-63 223
MS.gene012872.t1 AT3G14980 30.966 507 279 16 50 535 567 1023 1.18e-58 211
MS.gene012872.t1 AT3G14980 30.966 507 279 16 50 535 567 1023 1.18e-58 211
MS.gene012872.t1 AT3G14980 30.966 507 279 16 50 535 567 1023 1.18e-58 211
MS.gene012872.t1 AT3G14980 30.966 507 279 16 50 535 522 978 1.31e-58 211
MS.gene012872.t1 AT1G05380 31.828 443 263 9 105 538 516 928 1.39e-58 211
MS.gene012872.t1 AT1G05380 31.828 443 263 9 105 538 516 928 1.39e-58 211
MS.gene012872.t1 AT1G05380 31.828 443 263 9 105 538 516 928 1.39e-58 211
MS.gene012872.t1 AT3G14980 30.966 507 279 16 50 535 567 1023 1.59e-58 210
MS.gene012872.t1 AT5G36670 29.174 569 335 15 6 541 436 969 5.88e-58 209
MS.gene012872.t1 AT5G36670 29.174 569 335 15 6 541 436 969 5.88e-58 209
MS.gene012872.t1 AT5G36740 31.288 489 286 13 6 477 436 891 4.87e-57 205
MS.gene012872.t1 AT5G36740 31.288 489 286 13 6 477 436 891 4.87e-57 205
MS.gene012872.t1 AT5G36670 31.288 489 286 13 6 477 436 891 4.87e-57 205
MS.gene012872.t1 AT5G36670 28.769 577 337 16 6 541 283 826 4.93e-55 200
MS.gene012872.t1 AT5G36670 28.769 577 337 16 6 541 436 979 1.63e-54 199
MS.gene012872.t1 AT5G58610 33.827 405 212 11 66 445 536 909 4.38e-54 197
MS.gene012872.t1 AT4G14920 28.545 536 304 17 14 535 513 983 4.91e-54 197
MS.gene012872.t1 AT4G14920 28.545 536 304 17 14 535 513 983 4.91e-54 197
MS.gene012872.t1 AT4G14920 28.545 536 304 17 14 535 513 983 5.55e-54 197
MS.gene012872.t1 AT5G63900 36.562 320 169 9 222 538 255 543 6.23e-54 191
MS.gene012872.t1 AT2G37520 27.483 433 227 14 143 524 410 806 4.68e-38 149
MS.gene012872.t1 AT3G53680 27.842 431 227 14 143 524 429 824 1.11e-37 149
MS.gene012872.t1 AT3G53680 27.842 431 227 14 143 524 427 822 1.13e-37 148
MS.gene012872.t1 AT3G14980 29.904 418 222 16 50 446 567 934 3.57e-37 147
MS.gene012872.t1 AT2G36720 24.454 458 250 11 143 540 557 978 1.96e-34 139
MS.gene012872.t1 AT2G36720 24.454 458 250 11 143 540 557 978 1.96e-34 139
MS.gene012872.t1 AT2G27980 25.957 470 236 13 143 542 637 1064 8.50e-31 128

Find 99 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATACTTTCTTTGAATTTC+AGG 0.141944 3.3:+85207056 MS.gene012872:CDS
ACATGTTCTGTTTGTTGTTT+TGG 0.157762 3.3:+85206172 MS.gene012872:CDS
AGATCATTCCCAAGCTTATT+TGG 0.196412 3.3:-85206544 None:intergenic
GTGGCAACCATAAGGATTTA+TGG 0.239122 3.3:+85206820 MS.gene012872:CDS
TGGTTTCTATACTGCGATTA+TGG 0.240807 3.3:+85206774 MS.gene012872:CDS
TGTAAATTCTTGTTTGCGTT+TGG 0.242808 3.3:-85206326 None:intergenic
ACCATCCAAAAGTATCTTCT+TGG 0.296021 3.3:+85206003 MS.gene012872:CDS
GTTGATAAAGGATGGAGTTT+TGG 0.297915 3.3:+85205835 MS.gene012872:CDS
GTCTTCCAAGAAGATACTTT+TGG 0.305890 3.3:-85206008 None:intergenic
ACAAGCATGAGCCTCAAATT+TGG 0.327395 3.3:-85205966 None:intergenic
TCGTTCCACTCTGATTGTTT+AGG 0.327474 3.3:+85206229 MS.gene012872:CDS
GTTTCTAAAGCCTCTAGTTC+TGG 0.332866 3.3:+85205653 MS.gene012872:CDS
CTAAAGAGGGAAGGTATAAG+AGG 0.337184 3.3:+85205800 MS.gene012872:CDS
ACAAGAGATACTCCCTCTTT+TGG 0.339052 3.3:-85205900 None:intergenic
CGGAACTTCATTGTTGGACT+TGG 0.361651 3.3:+85206030 MS.gene012872:CDS
GTAAATTCTTGTTTGCGTTT+GGG 0.377232 3.3:-85206325 None:intergenic
CAGACCATCCGGATCTCGTT+TGG 0.386226 3.3:-85206254 None:intergenic
CCAAGTGTCTATAGCATCCT+TGG 0.387385 3.3:-85206977 None:intergenic
GGAACGGATAAATCAACTTC+TGG 0.396861 3.3:+85205626 MS.gene012872:CDS
ACATGTTCCCACAAACTTCA+TGG 0.397494 3.3:-85206492 None:intergenic
ATTCACTCTCACCAAATTTG+AGG 0.418669 3.3:+85205955 MS.gene012872:CDS
TGTGTAAAGGCAACAAGAAT+TGG 0.422575 3.3:+85206409 MS.gene012872:CDS
CATAAGGATTTATGGTCAAA+AGG 0.428606 3.3:+85206828 MS.gene012872:CDS
CAAACGAGATCCGGATGGTC+TGG 0.433972 3.3:+85206255 MS.gene012872:CDS
AGTTGATTAACTTAGGAGTT+GGG 0.439665 3.3:+85206935 MS.gene012872:CDS
GAGACACTTTCTTTGTTAAG+TGG 0.443344 3.3:-85207099 None:intergenic
AGACCATCCGGATCTCGTTT+GGG 0.445042 3.3:-85206253 None:intergenic
AAGAAACGTTTGAACTTTCG+TGG 0.445092 3.3:+85206754 MS.gene012872:CDS
TTGTAATGCTGAAGCAAAAT+CGG 0.448060 3.3:+85206099 MS.gene012872:CDS
TTTAGGTCCCAAACGAGATC+CGG 0.450042 3.3:+85206246 MS.gene012872:CDS
ATGTGACTAGAAACTTCATT+TGG 0.453838 3.3:-85206436 None:intergenic
GGAAGACGGAACTTCATTGT+TGG 0.455884 3.3:+85206024 MS.gene012872:CDS
TCTGAGCTCAGCCAATCAAA+AGG 0.457877 3.3:+85206069 MS.gene012872:CDS
ATTGACAATGTTACCAAAAG+AGG 0.459673 3.3:+85205887 MS.gene012872:CDS
GAAGTGTTCTCAGTTGATAA+AGG 0.461389 3.3:+85205823 MS.gene012872:CDS
CGTAAATTGACTGTGGCTCT+TGG 0.463118 3.3:+85206643 MS.gene012872:CDS
GAGGAACAGTTGATTAACTT+AGG 0.464976 3.3:+85206928 MS.gene012872:CDS
GGTGTGCTGCGTGAGAGTTT+TGG 0.469338 3.3:+85206664 MS.gene012872:CDS
TGTTGTTGTTGTTCCTTCCT+CGG 0.473116 3.3:-85205546 None:intergenic
CTGAGCTCAGCCAATCAAAA+GGG 0.474959 3.3:+85206070 MS.gene012872:CDS
CTAGGAATACCAAATAAGCT+TGG 0.478097 3.3:+85206535 MS.gene012872:CDS
TATACTGCGATTATGGAGAA+AGG 0.478537 3.3:+85206781 MS.gene012872:CDS
CCGTTCCCTCAGATTCTCTC+AGG 0.480436 3.3:-85205610 None:intergenic
TAGGAATACCAAATAAGCTT+GGG 0.480908 3.3:+85206536 MS.gene012872:CDS
ATACTGCGATTATGGAGAAA+GGG 0.484197 3.3:+85206782 MS.gene012872:CDS
ATTTCACTTGGGGTGTGTAA+AGG 0.484386 3.3:+85206396 MS.gene012872:CDS
CAGTTGATTAACTTAGGAGT+TGG 0.492298 3.3:+85206934 MS.gene012872:CDS
TATAATGTGAGTTGTGATGA+TGG 0.496882 3.3:+85206586 MS.gene012872:CDS
AGCTCAGAGCTTTCATTCGA+CGG 0.500191 3.3:-85206054 None:intergenic
TAACTTAGGAGTTGGGAGCT+TGG 0.501005 3.3:+85206942 MS.gene012872:CDS
AGCTTGGGAATGATCTAACT+TGG 0.501787 3.3:+85206551 MS.gene012872:CDS
GGATAAATCAACTTCTGGTA+AGG 0.504650 3.3:+85205631 MS.gene012872:CDS
AAAGAGGGAAAGTACTAAAG+AGG 0.506275 3.3:+85205786 MS.gene012872:CDS
TGAGTTCTGTGGCAACCATA+AGG 0.512428 3.3:+85206812 MS.gene012872:CDS
CGGATGGTCTGGATGGTACA+TGG 0.516273 3.3:+85206266 MS.gene012872:CDS
AAGAGGGAAAGTACTAAAGA+GGG 0.517147 3.3:+85205787 MS.gene012872:CDS
AATGTGCCGTTTGTTGATGA+AGG 0.520351 3.3:+85206900 MS.gene012872:CDS
GTTTCTAATTCAGTGGGTAG+TGG 0.524886 3.3:+85205761 MS.gene012872:CDS
CCAAGGATGCTATAGACACT+TGG 0.526403 3.3:+85206977 MS.gene012872:CDS
TAAAGAGGGAAGGTATAAGA+GGG 0.542556 3.3:+85205801 MS.gene012872:CDS
CATGTACCATCCAGACCATC+CGG 0.542947 3.3:-85206265 None:intergenic
CAATCAGAGTGGAACGAAGA+AGG 0.546313 3.3:-85206223 None:intergenic
ATCAGAAGTTTCTAATTCAG+TGG 0.547714 3.3:+85205754 MS.gene012872:CDS
TCAGTGGGTAGTGGTAAAAG+AGG 0.549198 3.3:+85205770 MS.gene012872:CDS
ATGTGAACGAAAATTTCACT+TGG 0.549257 3.3:+85206384 MS.gene012872:CDS
TGTTCTCAGTTGATAAAGGA+TGG 0.550925 3.3:+85205827 MS.gene012872:CDS
CGAGATCCGGATGGTCTGGA+TGG 0.554408 3.3:+85206259 MS.gene012872:CDS
CAGTGGGTAGTGGTAAAAGA+GGG 0.562756 3.3:+85205771 MS.gene012872:CDS
CAAGCCCCTTCATCAACAAA+CGG 0.563396 3.3:-85206906 None:intergenic
AAAAGTATCTTCTTGGAAGA+CGG 0.564085 3.3:+85206010 MS.gene012872:CDS
TGTGAACGAAAATTTCACTT+GGG 0.566723 3.3:+85206385 MS.gene012872:CDS
AGATCGCCTGAGAGAATCTG+AGG 0.577144 3.3:+85205604 MS.gene012872:CDS
TCAGAAGTTTCTAATTCAGT+GGG 0.578275 3.3:+85205755 MS.gene012872:CDS
CCTGAGAGAATCTGAGGGAA+CGG 0.579608 3.3:+85205610 MS.gene012872:CDS
TTTAACAGAACCAGAACTAG+AGG 0.586425 3.3:-85205663 None:intergenic
CTGATGAGGAGTTTCATCAA+AGG 0.590006 3.3:+85206617 MS.gene012872:CDS
GGTATCAAGATCAACTTCAA+AGG 0.591691 3.3:+85205703 MS.gene012872:CDS
ATGTGCCGTTTGTTGATGAA+GGG 0.591926 3.3:+85206901 MS.gene012872:CDS
CGACAGAGAGAATCCGAGGA+AGG 0.596626 3.3:+85205533 MS.gene012872:CDS
TTATGTCTAGAGAAACTACT+AGG 0.598338 3.3:+85206517 MS.gene012872:CDS
AAAGCGACAGAGAGAATCCG+AGG 0.599141 3.3:+85205529 MS.gene012872:CDS
GGGAAAGTACTAAAGAGGGA+AGG 0.603607 3.3:+85205791 MS.gene012872:CDS
TACTGCGATTATGGAGAAAG+GGG 0.609394 3.3:+85206783 MS.gene012872:CDS
CATATTCTACAACAGCAACT+CGG 0.614325 3.3:-85206295 None:intergenic
TGTGCCGTTTGTTGATGAAG+GGG 0.619488 3.3:+85206902 MS.gene012872:CDS
TTGACAATGTTACCAAAAGA+GGG 0.620789 3.3:+85205888 MS.gene012872:CDS
AGTGTCTATAGCATCCTTGG+AGG 0.622116 3.3:-85206974 None:intergenic
TTTGTTGATGAAGGGGCTTG+AGG 0.622358 3.3:+85206909 MS.gene012872:CDS
GTGAACGAAAATTTCACTTG+GGG 0.624887 3.3:+85206386 MS.gene012872:CDS
AAATGAAGTTTCTAGTCACA+TGG 0.625461 3.3:+85206438 MS.gene012872:CDS
AGAGGGAGTATCTCTTGTGA+AGG 0.627844 3.3:+85205905 MS.gene012872:CDS
TGAGCTCAGCCAATCAAAAG+GGG 0.629047 3.3:+85206071 MS.gene012872:CDS
GGTGACTTAATATTATGTGA+TGG 0.647953 3.3:+85206196 MS.gene012872:CDS
GATCGCCTGAGAGAATCTGA+GGG 0.652065 3.3:+85205605 MS.gene012872:CDS
GGTCCCAAACGAGATCCGGA+TGG 0.671675 3.3:+85206250 MS.gene012872:CDS
TGGTAACATTGTCAATACCA+CGG 0.676702 3.3:-85205880 None:intergenic
ACTGCGATTATGGAGAAAGG+GGG 0.694924 3.3:+85206784 MS.gene012872:CDS
AAGGAAGCGTAAATTGACTG+TGG 0.704717 3.3:+85206636 MS.gene012872:CDS
TGGGACCTAAACAATCAGAG+TGG 0.741486 3.3:-85206234 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTATTGAAAAAAATAAT+TGG + chr3.3:85206464-85206483 MS.gene012872:CDS 10.0%
!!! ATCAAATCTTTTTTAGATAA+AGG - chr3.3:85206703-85206722 None:intergenic 15.0%
!! AAAAAAAAATATCGAAGACA+AGG + chr3.3:85206877-85206896 MS.gene012872:CDS 20.0%
!! TTATACTTTCTTTGAATTTC+AGG + chr3.3:85207056-85207075 MS.gene012872:CDS 20.0%
!!! TTGTCTTCGATATTTTTTTT+TGG - chr3.3:85206878-85206897 None:intergenic 20.0%
! TAAAAAAGCTACACTAACAA+CGG + chr3.3:85205682-85205701 MS.gene012872:CDS 25.0%
!!! TCTTCGATATTTTTTTTTGG+TGG - chr3.3:85206875-85206894 None:intergenic 25.0%
AGTTGATTAACTTAGGAGTT+GGG + chr3.3:85206935-85206954 MS.gene012872:CDS 30.0%
ATCAGAAGTTTCTAATTCAG+TGG + chr3.3:85205754-85205773 MS.gene012872:CDS 30.0%
ATGTGAACGAAAATTTCACT+TGG + chr3.3:85206384-85206403 MS.gene012872:CDS 30.0%
ATGTGACTAGAAACTTCATT+TGG - chr3.3:85206439-85206458 None:intergenic 30.0%
ATTGACAATGTTACCAAAAG+AGG + chr3.3:85205887-85205906 MS.gene012872:CDS 30.0%
CATAAGGATTTATGGTCAAA+AGG + chr3.3:85206828-85206847 MS.gene012872:CDS 30.0%
GGTGACTTAATATTATGTGA+TGG + chr3.3:85206196-85206215 MS.gene012872:CDS 30.0%
TAGGAATACCAAATAAGCTT+GGG + chr3.3:85206536-85206555 MS.gene012872:CDS 30.0%
TATAATGTGAGTTGTGATGA+TGG + chr3.3:85206586-85206605 MS.gene012872:CDS 30.0%
TCAGAAGTTTCTAATTCAGT+GGG + chr3.3:85205755-85205774 MS.gene012872:CDS 30.0%
TGTGAACGAAAATTTCACTT+GGG + chr3.3:85206385-85206404 MS.gene012872:CDS 30.0%
TTATGTCTAGAGAAACTACT+AGG + chr3.3:85206517-85206536 MS.gene012872:CDS 30.0%
TTGACAATGTTACCAAAAGA+GGG + chr3.3:85205888-85205907 MS.gene012872:CDS 30.0%
TTGTAATGCTGAAGCAAAAT+CGG + chr3.3:85206099-85206118 MS.gene012872:CDS 30.0%
! CTTTTGACCATAAATCCTTA+TGG - chr3.3:85206830-85206849 None:intergenic 30.0%
! GTAAATTCTTGTTTGCGTTT+GGG - chr3.3:85206328-85206347 None:intergenic 30.0%
! TGTAAATTCTTGTTTGCGTT+TGG - chr3.3:85206329-85206348 None:intergenic 30.0%
!! AAAAGTATCTTCTTGGAAGA+CGG + chr3.3:85206010-85206029 MS.gene012872:CDS 30.0%
!! AAATGAAGTTTCTAGTCACA+TGG + chr3.3:85206438-85206457 MS.gene012872:CDS 30.0%
!!! ACATGTTCTGTTTGTTGTTT+TGG + chr3.3:85206172-85206191 MS.gene012872:CDS 30.0%
!!! ATGTTCTGTTTGTTGTTTTG+GGG + chr3.3:85206174-85206193 MS.gene012872:CDS 30.0%
!!! CATGTTCTGTTTGTTGTTTT+GGG + chr3.3:85206173-85206192 MS.gene012872:CDS 30.0%
AAGAAACGTTTGAACTTTCG+TGG + chr3.3:85206754-85206773 MS.gene012872:CDS 35.0%
AGATCATTCCCAAGCTTATT+TGG - chr3.3:85206547-85206566 None:intergenic 35.0%
ATACTGCGATTATGGAGAAA+GGG + chr3.3:85206782-85206801 MS.gene012872:CDS 35.0%
ATTCACTCTCACCAAATTTG+AGG + chr3.3:85205955-85205974 MS.gene012872:CDS 35.0%
CAGTTGATTAACTTAGGAGT+TGG + chr3.3:85206934-85206953 MS.gene012872:CDS 35.0%
CATATTCTACAACAGCAACT+CGG - chr3.3:85206298-85206317 None:intergenic 35.0%
CTAGGAATACCAAATAAGCT+TGG + chr3.3:85206535-85206554 MS.gene012872:CDS 35.0%
GAGACACTTTCTTTGTTAAG+TGG - chr3.3:85207102-85207121 None:intergenic 35.0%
GAGGAACAGTTGATTAACTT+AGG + chr3.3:85206928-85206947 MS.gene012872:CDS 35.0%
GGATAAATCAACTTCTGGTA+AGG + chr3.3:85205631-85205650 MS.gene012872:CDS 35.0%
GGTATCAAGATCAACTTCAA+AGG + chr3.3:85205703-85205722 MS.gene012872:CDS 35.0%
GTGAACGAAAATTTCACTTG+GGG + chr3.3:85206386-85206405 MS.gene012872:CDS 35.0%
TATACTGCGATTATGGAGAA+AGG + chr3.3:85206781-85206800 MS.gene012872:CDS 35.0%
TGGTAACATTGTCAATACCA+CGG - chr3.3:85205883-85205902 None:intergenic 35.0%
TGGTTTCTATACTGCGATTA+TGG + chr3.3:85206774-85206793 MS.gene012872:CDS 35.0%
TGTGTAAAGGCAACAAGAAT+TGG + chr3.3:85206409-85206428 MS.gene012872:CDS 35.0%
TTTAACAGAACCAGAACTAG+AGG - chr3.3:85205666-85205685 None:intergenic 35.0%
! ACAATCATTCCCCTTTTGAT+TGG - chr3.3:85206083-85206102 None:intergenic 35.0%
! GTCTTCCAAGAAGATACTTT+TGG - chr3.3:85206011-85206030 None:intergenic 35.0%
! GTTCAAACGTTTCTTTTCTG+AGG - chr3.3:85206749-85206768 None:intergenic 35.0%
! TAAAGAGGGAAGGTATAAGA+GGG + chr3.3:85205801-85205820 MS.gene012872:CDS 35.0%
! TCCAAGAAGATACTTTTGGA+TGG - chr3.3:85206007-85206026 None:intergenic 35.0%
!! AAAGAGGGAAAGTACTAAAG+AGG + chr3.3:85205786-85205805 MS.gene012872:CDS 35.0%
!! AAGAGGGAAAGTACTAAAGA+GGG + chr3.3:85205787-85205806 MS.gene012872:CDS 35.0%
!! ACCATCCAAAAGTATCTTCT+TGG + chr3.3:85206003-85206022 MS.gene012872:CDS 35.0%
!! GAAGTGTTCTCAGTTGATAA+AGG + chr3.3:85205823-85205842 MS.gene012872:CDS 35.0%
!! GTTGATAAAGGATGGAGTTT+TGG + chr3.3:85205835-85205854 MS.gene012872:CDS 35.0%
!! TGTTCTCAGTTGATAAAGGA+TGG + chr3.3:85205827-85205846 MS.gene012872:CDS 35.0%
!!! TGTTCTGTTTGTTGTTTTGG+GGG + chr3.3:85206175-85206194 MS.gene012872:CDS 35.0%
ACAAGCATGAGCCTCAAATT+TGG - chr3.3:85205969-85205988 None:intergenic 40.0%
ACATGTTCCCACAAACTTCA+TGG - chr3.3:85206495-85206514 None:intergenic 40.0%
AGCTTGGGAATGATCTAACT+TGG + chr3.3:85206551-85206570 MS.gene012872:CDS 40.0%
ATTTCACTTGGGGTGTGTAA+AGG + chr3.3:85206396-85206415 MS.gene012872:CDS 40.0%
CTGATGAGGAGTTTCATCAA+AGG + chr3.3:85206617-85206636 MS.gene012872:CDS 40.0%
GGAACGGATAAATCAACTTC+TGG + chr3.3:85205626-85205645 MS.gene012872:CDS 40.0%
GTGGCAACCATAAGGATTTA+TGG + chr3.3:85206820-85206839 MS.gene012872:CDS 40.0%
GTTTCTAATTCAGTGGGTAG+TGG + chr3.3:85205761-85205780 MS.gene012872:CDS 40.0%
TACTGCGATTATGGAGAAAG+GGG + chr3.3:85206783-85206802 MS.gene012872:CDS 40.0%
TCGTTCCACTCTGATTGTTT+AGG + chr3.3:85206229-85206248 MS.gene012872:CDS 40.0%
! AAGGAAGCGTAAATTGACTG+TGG + chr3.3:85206636-85206655 MS.gene012872:CDS 40.0%
! ACAAGAGATACTCCCTCTTT+TGG - chr3.3:85205903-85205922 None:intergenic 40.0%
! CTAAAGAGGGAAGGTATAAG+AGG + chr3.3:85205800-85205819 MS.gene012872:CDS 40.0%
! GGTTGCTGAGATTGTTTTCA+TGG + chr3.3:85206849-85206868 MS.gene012872:CDS 40.0%
! GGTTTTGCCATGAAGTTTGT+GGG + chr3.3:85206485-85206504 MS.gene012872:CDS 40.0%
! TGATGGAGATTTTGCTGATG+AGG + chr3.3:85206603-85206622 MS.gene012872:CDS 40.0%
! TGTTGTTGTTGTTCCTTCCT+CGG - chr3.3:85205549-85205568 None:intergenic 40.0%
!! AATGTGCCGTTTGTTGATGA+AGG + chr3.3:85206900-85206919 MS.gene012872:CDS 40.0%
!! AGGCGATCTTTTGACTGTAA+TGG - chr3.3:85205593-85205612 None:intergenic 40.0%
!! ATGTGCCGTTTGTTGATGAA+GGG + chr3.3:85206901-85206920 MS.gene012872:CDS 40.0%
!! GTTTCTAAAGCCTCTAGTTC+TGG + chr3.3:85205653-85205672 MS.gene012872:CDS 40.0%
!! TGGTTTTGCCATGAAGTTTG+TGG + chr3.3:85206484-85206503 MS.gene012872:CDS 40.0%
!!! AAGGATGGAGTTTTGGTTTC+TGG + chr3.3:85205842-85205861 MS.gene012872:CDS 40.0%
!!! AGGATGGAGTTTTGGTTTCT+GGG + chr3.3:85205843-85205862 MS.gene012872:CDS 40.0%
ACTGCGATTATGGAGAAAGG+GGG + chr3.3:85206784-85206803 MS.gene012872:CDS 45.0%
AGCTCAGAGCTTTCATTCGA+CGG - chr3.3:85206057-85206076 None:intergenic 45.0%
AGTGTCTATAGCATCCTTGG+AGG - chr3.3:85206977-85206996 None:intergenic 45.0%
CAAGCCCCTTCATCAACAAA+CGG - chr3.3:85206909-85206928 None:intergenic 45.0%
CAATCAGAGTGGAACGAAGA+AGG - chr3.3:85206226-85206245 None:intergenic 45.0%
CCAAGGATGCTATAGACACT+TGG + chr3.3:85206977-85206996 MS.gene012872:CDS 45.0%
CCAAGTGTCTATAGCATCCT+TGG - chr3.3:85206980-85206999 None:intergenic 45.0%
CGGAACTTCATTGTTGGACT+TGG + chr3.3:85206030-85206049 MS.gene012872:CDS 45.0%
CGTAAATTGACTGTGGCTCT+TGG + chr3.3:85206643-85206662 MS.gene012872:CDS 45.0%
CTGAGCTCAGCCAATCAAAA+GGG + chr3.3:85206070-85206089 MS.gene012872:CDS 45.0%
GGAAGACGGAACTTCATTGT+TGG + chr3.3:85206024-85206043 MS.gene012872:CDS 45.0%
TAACTTAGGAGTTGGGAGCT+TGG + chr3.3:85206942-85206961 MS.gene012872:CDS 45.0%
TCTGAGCTCAGCCAATCAAA+AGG + chr3.3:85206069-85206088 MS.gene012872:CDS 45.0%
TGAGCTCAGCCAATCAAAAG+GGG + chr3.3:85206071-85206090 MS.gene012872:CDS 45.0%
TGAGTTCTGTGGCAACCATA+AGG + chr3.3:85206812-85206831 MS.gene012872:CDS 45.0%
TGGGACCTAAACAATCAGAG+TGG - chr3.3:85206237-85206256 None:intergenic 45.0%
TTTAGGTCCCAAACGAGATC+CGG + chr3.3:85206246-85206265 MS.gene012872:CDS 45.0%
! CAGTGGGTAGTGGTAAAAGA+GGG + chr3.3:85205771-85205790 MS.gene012872:CDS 45.0%
! TCAGTGGGTAGTGGTAAAAG+AGG + chr3.3:85205770-85205789 MS.gene012872:CDS 45.0%
! TTTGTTGATGAAGGGGCTTG+AGG + chr3.3:85206909-85206928 MS.gene012872:CDS 45.0%
!! AGAGGGAGTATCTCTTGTGA+AGG + chr3.3:85205905-85205924 MS.gene012872:CDS 45.0%
!! GGGAAAGTACTAAAGAGGGA+AGG + chr3.3:85205791-85205810 MS.gene012872:CDS 45.0%
!! TGTGCCGTTTGTTGATGAAG+GGG + chr3.3:85206902-85206921 MS.gene012872:CDS 45.0%
!!! CTTGGTTTTGCATTCCTCCA+AGG + chr3.3:85206960-85206979 MS.gene012872:CDS 45.0%
AAAGCGACAGAGAGAATCCG+AGG + chr3.3:85205529-85205548 MS.gene012872:CDS 50.0%
AGACCATCCGGATCTCGTTT+GGG - chr3.3:85206256-85206275 None:intergenic 50.0%
AGATCGCCTGAGAGAATCTG+AGG + chr3.3:85205604-85205623 MS.gene012872:CDS 50.0%
AGGGGGTAAAGTGAGTTCTG+TGG + chr3.3:85206801-85206820 MS.gene012872:CDS 50.0%
CATGTACCATCCAGACCATC+CGG - chr3.3:85206268-85206287 None:intergenic 50.0%
CCTGAGAGAATCTGAGGGAA+CGG + chr3.3:85205610-85205629 MS.gene012872:CDS 50.0%
GATCGCCTGAGAGAATCTGA+GGG + chr3.3:85205605-85205624 MS.gene012872:CDS 50.0%
! GGGACTATTGTTTTCTGCCG+TGG + chr3.3:85205863-85205882 MS.gene012872:CDS 50.0%
CAAACGAGATCCGGATGGTC+TGG + chr3.3:85206255-85206274 MS.gene012872:CDS 55.0%
CAGACCATCCGGATCTCGTT+TGG - chr3.3:85206257-85206276 None:intergenic 55.0%
CCGTTCCCTCAGATTCTCTC+AGG - chr3.3:85205613-85205632 None:intergenic 55.0%
CGACAGAGAGAATCCGAGGA+AGG + chr3.3:85205533-85205552 MS.gene012872:CDS 55.0%
CGGATGGTCTGGATGGTACA+TGG + chr3.3:85206266-85206285 MS.gene012872:CDS 55.0%
! GGTGTGCTGCGTGAGAGTTT+TGG + chr3.3:85206664-85206683 MS.gene012872:CDS 55.0%
CGAGATCCGGATGGTCTGGA+TGG + chr3.3:85206259-85206278 MS.gene012872:CDS 60.0%
GGTCCCAAACGAGATCCGGA+TGG + chr3.3:85206250-85206269 MS.gene012872:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 85205500 85207131 85205500 ID=MS.gene012872
chr3.3 mRNA 85205500 85207131 85205500 ID=MS.gene012872.t1;Parent=MS.gene012872
chr3.3 exon 85205500 85207131 85205500 ID=MS.gene012872.t1.exon1;Parent=MS.gene012872.t1
chr3.3 CDS 85205500 85207131 85205500 ID=cds.MS.gene012872.t1;Parent=MS.gene012872.t1
Gene Sequence

>MS.gene012872

ATGACTTCTCTGTCTACATTACAGTCAAAAAAGCGACAGAGAGAATCCGAGGAAGGAACAACAACAACAACAACAACAATTTCTTCATCTCCATTACAGTCAAAAGATCGCCTGAGAGAATCTGAGGGAACGGATAAATCAACTTCTGGTAAGGTTTCTAAAGCCTCTAGTTCTGGTTCTGTTAAAAAAGCTACACTAACAACGGTATCAAGATCAACTTCAAAGGAAAATGAGAAACATGTGAGTCAATCTGAATCAGAAGTTTCTAATTCAGTGGGTAGTGGTAAAAGAGGGAAAGTACTAAAGAGGGAAGGTATAAGAGGGAAGTGTTCTCAGTTGATAAAGGATGGAGTTTTGGTTTCTGGGACTATTGTTTTCTGCCGTGGTATTGACAATGTTACCAAAAGAGGGAGTATCTCTTGTGAAGGTATAGCTTGTGATTGTTGTCATGTTAAATTCACTCTCACCAAATTTGAGGCTCATGCTTGTTGTACAAGACGTAGACCATCCAAAAGTATCTTCTTGGAAGACGGAACTTCATTGTTGGACTTGGACCGTCGAATGAAAGCTCTGAGCTCAGCCAATCAAAAGGGGAATGATTGTAATGCTGAAGCAAAATCGGAAGCAGCGAATAGTTGTGTTGCTGAAGAAAAGTCTCATGAAAATAATGATACATGTTCTGTTTGTTGTTTTGGGGGTGACTTAATATTATGTGATGGATGTCCTTCTTCGTTCCACTCTGATTGTTTAGGTCCCAAACGAGATCCGGATGGTCTGGATGGTACATGGTTATGTCCGAGTTGCTGTTGTAGAATATGTTGTCATCCCAAACGCAAACAAGAATTTACAAATGATATTGATGACGATATTCTTGCTTGTGTTCAATGTGAACGAAAATTTCACTTGGGGTGTGTAAAGGCAACAAGAATTGGACAACCAAATGAAGTTTCTAGTCACATGGACAACATTATTGAAAAAAATAATTGGTTTTGCCATGAAGTTTGTGGGAACATGTTCTTATGTCTAGAGAAACTACTAGGAATACCAAATAAGCTTGGGAATGATCTAACTTGGACATTGTTGAAGTATAATGTGAGTTGTGATGATGGAGATTTTGCTGATGAGGAGTTTCATCAAAGGAAGCGTAAATTGACTGTGGCTCTTGGTGTGCTGCGTGAGAGTTTTGGTGAAACTATTGATCCTTTATCTAAAAAAGATTTGATTGAAGATGTTGTGTTTAGTAGATCCTCAGAAAAGAAACGTTTGAACTTTCGTGGTTTCTATACTGCGATTATGGAGAAAGGGGGTAAAGTGAGTTCTGTGGCAACCATAAGGATTTATGGTCAAAAGGTTGCTGAGATTGTTTTCATGGCCACCAAAAAAAAATATCGAAGACAAGGAATGTGCCGTTTGTTGATGAAGGGGCTTGAGGAACAGTTGATTAACTTAGGAGTTGGGAGCTTGGTTTTGCATTCCTCCAAGGATGCTATAGACACTTGGAAAAAATCATTTCATTTTGTTGAGATGACGAATGAAGACAAGTGTAAATTTGTTCATTATACTTTCTTTGAATTTCAGGACACTATCATGTGTCTTAAGCCACTTAACAAAGAAAGTGTCTCAAGTCACTGA
Protein sequence

>MS.gene012872.t1

MTSLSTLQSKKRQRESEEGTTTTTTTISSSPLQSKDRLRESEGTDKSTSGKVSKASSSGSVKKATLTTVSRSTSKENEKHVSQSESEVSNSVGSGKRGKVLKREGIRGKCSQLIKDGVLVSGTIVFCRGIDNVTKRGSISCEGIACDCCHVKFTLTKFEAHACCTRRRPSKSIFLEDGTSLLDLDRRMKALSSANQKGNDCNAEAKSEAANSCVAEEKSHENNDTCSVCCFGGDLILCDGCPSSFHSDCLGPKRDPDGLDGTWLCPSCCCRICCHPKRKQEFTNDIDDDILACVQCERKFHLGCVKATRIGQPNEVSSHMDNIIEKNNWFCHEVCGNMFLCLEKLLGIPNKLGNDLTWTLLKYNVSCDDGDFADEEFHQRKRKLTVALGVLRESFGETIDPLSKKDLIEDVVFSRSSEKKRLNFRGFYTAIMEKGGKVSSVATIRIYGQKVAEIVFMATKKKYRRQGMCRLLMKGLEEQLINLGVGSLVLHSSKDAIDTWKKSFHFVEMTNEDKCKFVHYTFFEFQDTIMCLKPLNKESVSSH