AlfalfaGEDB | MS.gene012945

M. sativa cultivar XinJiangDaYe / MS.gene012945

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012945.t1	XP_024632639.1	95.5	693	31	0	1	693	1	693	0.00E+00	1348.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012945.t1	Q9SZL8	31.6	636	426	7	3	632	69	701	2.8e-97	357.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012945.t1	A0A2Z6MT37	64.4	736	157	1	1	736	1	631	1.2e-261	912.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene012945.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012945.t1	MTR_5g039760	44.221	199	84	4	6	202	9	182	5.91e-46	162
MS.gene012945.t1	MTR_0558s0020	34.601	263	140	6	11	247	40	296	9.08e-39	145
MS.gene012945.t1	MTR_0402s0040	40.887	203	108	3	4	204	23	215	3.66e-38	149
MS.gene012945.t1	MTR_6g051425	32.014	278	170	4	9	274	19	289	4.38e-38	145
MS.gene012945.t1	MTR_7g074790	45.029	171	74	3	6	175	9	160	1.21e-37	140
MS.gene012945.t1	MTR_6g090505	35.417	240	129	5	35	254	5	238	9.55e-34	133
MS.gene012945.t1	MTR_8g446020	38.202	178	108	1	72	247	79	256	4.07e-33	128
MS.gene012945.t1	MTR_7g061980	47.826	115	58	2	3	116	6	119	2.28e-28	110
MS.gene012945.t1	MTR_5g015480	47.541	122	62	1	7	126	56	177	2.84e-27	112
MS.gene012945.t1	MTR_4g102720	35.928	167	73	2	6	172	6	138	1.34e-26	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012945.t1	AT4G38180	31.604	636	426	7	3	632	69	701	1.27e-110	354
MS.gene012945.t1	AT4G15090	29.968	624	424	7	3	622	47	661	1.74e-97	320
MS.gene012945.t1	AT4G15090	29.968	624	424	7	3	622	47	661	1.74e-97	320
MS.gene012945.t1	AT4G15090	29.968	624	424	7	3	622	47	661	1.74e-97	320
MS.gene012945.t1	AT4G15090	29.968	624	424	7	3	622	47	661	1.74e-97	320
MS.gene012945.t1	AT4G15090	29.968	624	424	7	3	622	47	661	1.74e-97	320
MS.gene012945.t1	AT3G22170	28.846	624	392	8	2	607	65	654	2.89e-88	295
MS.gene012945.t1	AT3G22170	28.846	624	392	8	2	607	65	654	2.89e-88	295
MS.gene012945.t1	AT1G76320	29.716	599	401	9	11	607	1	581	1.77e-81	273
MS.gene012945.t1	AT1G76320	29.716	599	401	9	11	607	1	581	6.67e-81	273

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Find 133 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGCTGACTCATTCAAA+TGG	0.528647	3.1:+81176089	MS.gene012945:CDS
AAAGGATTGTGCCTCTATAA+TGG	0.369850	3.1:-81176042	None:intergenic
AACAAATCACAAACATATTT+TGG	0.063768	3.1:+81175906	MS.gene012945:CDS
AAGCCTGAAAATAATGCAAG+TGG	0.596112	3.1:-81176016	None:intergenic
AAGGGGTTTAAGATTAAGCC+TGG	0.452760	3.1:+81177240	MS.gene012945:CDS
AAGTGGTCGATTAGCACGGT+TGG	0.614021	3.1:-81175999	None:intergenic
AATATGAGTCACAACCAAAG+GGG	0.711774	3.1:+81177223	MS.gene012945:CDS
AATGGCTAAAGCACTAGTTG+AGG	0.676750	3.1:+81176183	MS.gene012945:CDS
AATTGAATAACACTGATACC+AGG	0.672015	3.1:-81176532	None:intergenic
AATTGGGTGAAATCAATGTA+TGG	0.495445	3.1:+81176400	MS.gene012945:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGAATAACACTGATACC+AGG	-	chr3.1:81176535-81176554	None:intergenic	30.0%
AATTGGGTGAAATCAATGTA+TGG	+	chr3.1:81176400-81176419	MS.gene012945:CDS	30.0%
ATCAATAATAACACCATCAC+GGG	-	chr3.1:81176977-81176996	None:intergenic	30.0%
CATGATATAGAGAAAGTTGT+TGG	-	chr3.1:81176835-81176854	None:intergenic	30.0%
CGATGTGTACTAAACAATTT+AGG	-	chr3.1:81177027-81177046	None:intergenic	30.0%
CTACATAAGCTTGTAGAAAA+GGG	+	chr3.1:81177108-81177127	MS.gene012945:CDS	30.0%
GAATGTTGATATCTTATCCT+TGG	-	chr3.1:81176637-81176656	None:intergenic	30.0%
GATCAATAATAACACCATCA+CGG	-	chr3.1:81176978-81176997	None:intergenic	30.0%
GCAAGAATGATATTGGATTA+TGG	+	chr3.1:81175935-81175954	MS.gene012945:CDS	30.0%
GTATGGTATCAAGCAAAAAT+GGG	+	chr3.1:81176417-81176436	MS.gene012945:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	81175284	81177674	81175284	ID=MS.gene012945
chr3.1	mRNA	81175284	81177674	81175284	ID=MS.gene012945.t1;Parent=MS.gene012945
chr3.1	exon	81175284	81177362	81175284	ID=MS.gene012945.t1.exon1;Parent=MS.gene012945.t1
chr3.1	CDS	81175284	81177362	81175284	ID=cds.MS.gene012945.t1;Parent=MS.gene012945.t1
chr3.1	exon	81177449	81177559	81177449	ID=MS.gene012945.t1.exon2;Parent=MS.gene012945.t1
chr3.1	CDS	81177449	81177559	81177449	ID=cds.MS.gene012945.t1;Parent=MS.gene012945.t1
chr3.1	exon	81177654	81177674	81177654	ID=MS.gene012945.t1.exon3;Parent=MS.gene012945.t1
chr3.1	CDS	81177654	81177674	81177654	ID=cds.MS.gene012945.t1;Parent=MS.gene012945.t1

Gene Sequence

>MS.gene012945

ATGGCACTTAATGCGAAACCGATTGTTGGTTTGGAATTTGATAGCGTAGATACGACTTGGCAATTTTGGGTTGAATATGGTAAGAAATGTGGTTTTGGAGTTAGAAATGATTACTTGAACAAACGAAAGGTAGATGGCTTGATTACATCCGGCAGATTTGTTTGTTCCAAGGAGGGCAGTAGGTTGAAAGACAAAAGATCCTCTTTGGTTAAAAAGCCTAGGGCTGATACGAGATCAGGGTGTCCAGTAAGAATTTCATTCCGTCTAAGAGATGGGAAGTATGTAATACATGAGTTTGAGGAAACCCACAACCATCTTTTACAACACACAGAAACAACACACATGCTAGCATCACATCGTAAAATATCAGAAGTTCAAGCCTATGAGATCGAAATGGCAGAGGAATCTGGACTAATGCAAAAGTCTTCATTTCAACTTATGAGCACACAGGCAGGAGGTAGAACTAATCTCGGATTTACACGATTGGATGTCAAAAACTATCTTAAAGCAAGAAGACAACGTAGCATGGTGTATGGGGAAGTTGGTAGTCTTATGCAGTATTTTCAACACCAGATGTTGGACAATCCATCATTTTACCACGCATATCAAATGGACTGTGATGAACAAATCACAAACATATTTTGGGCTGATGCAAGAATGATATTGGATTATGGATATTTCGGTGATGTAGTTTCTTTGGATACAACATATTGCACCAACCGTGCTAATCGACCACTTGCATTATTTTCAGGCTTTAACCATTATAGAGGCACAATCCTTTTTGGGGCTGCACTACTATATGATGAAACCGCTGACTCATTCAAATGGTTATTTGAAACATTTCTTGAAGCACATGGAAATAAAAAGCCTCAAACCTTGTTCACTGACCAAGCCCAAGCAATGGCTAAAGCACTAGTTGAGGTGATGCCAGAGACTCGACATGGGTTATGTACATGGCATTTGATGCAAAATGGGATCAAACACCTAGGTTGCTTGATGAAAGGGGGAAGTGATTTACTATCTGACTTTAAGAAGTGCATGTATGAATACGATCAAGAGGTGAAGTTTGAAGCAGCTTGGAGCAAGTTGGTTGCAAAATTTGATCTATTTGATAACAATTGGGTGAAATCAATGTATGGTATCAAGCAAAAATGGGCATCATGTCACATGAACAAAGCTATCACACTTGGAATGCGAAGCACTCAACTTAGTGAGAGTTTAAATTCCAGTTTTAAGGCTTGTATGAGACCTGGTATCAGTGTTATTCAATTCTTCCAACACTTTGAGAAAGTTGTTGAGGAGAAACGATACAACGAGTTAGTATGTGAGTATGAGTCTCGACATAAACTACCAAGGATAAGATATCAACATTCTCCGATTCTAATGCAACTCGCACAAGTGTACACACATAAAATCTTTGATATGTTCAATGATGAGTTTTCCTTATTCTTAGCTGCTAGCAAAAAAAGTGAGAATCTGTCTCAACTTCCATTTGAATATGTTATCACCATGTTTAAAGTGGAAGGAGAGTGGACAGTACTATTTGATCCAACAACTTTCTCTATATCATGTACTTGTAAAAAATTTGAGACTTTTGGCATACTCTGTTGTCATGCATTAAAAGTCATTGAGGCAAATGATGTTAAACTGATCCCCAATCAATACATCTTAAAAAGATGGACAAGAGATGCCCGTGATGGTGTTATTATTGATCATATTGGAAATGAGGTTGTTGATGATCCTAAATTGTTTAGTACACATCGATATAAGAGATTATGCTCCACTATGATTAGATTGGCAGCTGACGTGTCAACATCTGAATATCTACATAAGCTTGTAGAAAAGGGTTTGTATGACTTGTGTAAGCTGGTGATGGAGGCCCGGTTACGAGAAATAGAGAATGCTGATGATGAAGGTGATGCCCCAACAGTAACAAAAGAATATGAGTCACAACCAAAGGGGTTTAAGATTAAGCCTGGATTACAAAATCGTAGACGACTAAAGAGTTGTGTCGAGCTTATGTCTAAGAAAAAAAGCAAAGCAACAATTGTAAAACCTACACCACGTCAAAGATCAAAGGTGTAAATCCTAATCAATTCATCTACTTAAACTTTTGCTTATTTCAATTTCATTAACTAGGTGTTAATTTTTCATATTTTTTGAAGGATCTTGATTCTCTAAGTCAAATGGAATCTGGGACATCAACTTTAGCACAATCAGCATGTGAGCTTTCTCAAACAAGTGAGGACAACTTTAGTTTCACTAGATTATTAATGGTGAGATATTTGTGTCTCTTAATTGTAGTTTCACCACCTAAATTACTTTATTACAGTTTGTATTCACAATGTATATTTTACTTGAATAATGTAGGAGCCACTCAATGATGGATGA

Protein sequence

>MS.gene012945.t1

MALNAKPIVGLEFDSVDTTWQFWVEYGKKCGFGVRNDYLNKRKVDGLITSGRFVCSKEGSRLKDKRSSLVKKPRADTRSGCPVRISFRLRDGKYVIHEFEETHNHLLQHTETTHMLASHRKISEVQAYEIEMAEESGLMQKSSFQLMSTQAGGRTNLGFTRLDVKNYLKARRQRSMVYGEVGSLMQYFQHQMLDNPSFYHAYQMDCDEQITNIFWADARMILDYGYFGDVVSLDTTYCTNRANRPLALFSGFNHYRGTILFGAALLYDETADSFKWLFETFLEAHGNKKPQTLFTDQAQAMAKALVEVMPETRHGLCTWHLMQNGIKHLGCLMKGGSDLLSDFKKCMYEYDQEVKFEAAWSKLVAKFDLFDNNWVKSMYGIKQKWASCHMNKAITLGMRSTQLSESLNSSFKACMRPGISVIQFFQHFEKVVEEKRYNELVCEYESRHKLPRIRYQHSPILMQLAQVYTHKIFDMFNDEFSLFLAASKKSENLSQLPFEYVITMFKVEGEWTVLFDPTTFSISCTCKKFETFGILCCHALKVIEANDVKLIPNQYILKRWTRDARDGVIIDHIGNEVVDDPKLFSTHRYKRLCSTMIRLAADVSTSEYLHKLVEKGLYDLCKLVMEARLREIENADDEGDAPTVTKEYESQPKGFKIKPGLQNRRRLKSCVELMSKKKSKATIVKPTPRQRSKDLDSLSQMESGTSTLAQSACELSQTSEDNFSFTRLLMEPLNDG