Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012968.t1 | PNX73002.1 | 42.7 | 843 | 180 | 8 | 109 | 737 | 1 | 754 | 1.00E-160 | 577.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012968.t1 | Q9SZL8 | 28.9 | 194 | 130 | 3 | 265 | 453 | 448 | 638 | 9.9e-16 | 87.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012968.t1 | A0A2K3L384 | 42.7 | 843 | 180 | 8 | 109 | 737 | 1 | 754 | 7.2e-161 | 577.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene012968.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012968.t1 | MTR_3g080590 | 87.742 | 155 | 19 | 0 | 1 | 155 | 1 | 155 | 4.52e-79 | 251 |
| MS.gene012968.t1 | MTR_7g446520 | 46.114 | 193 | 89 | 2 | 98 | 290 | 81 | 258 | 1.24e-44 | 164 |
| MS.gene012968.t1 | MTR_0645s0010 | 67.593 | 108 | 29 | 3 | 288 | 395 | 24 | 125 | 1.09e-35 | 131 |
| MS.gene012968.t1 | MTR_7g446480 | 52.679 | 112 | 53 | 0 | 179 | 290 | 140 | 251 | 1.56e-31 | 126 |
| MS.gene012968.t1 | MTR_7g028855 | 45.395 | 152 | 78 | 2 | 98 | 245 | 113 | 263 | 4.62e-30 | 124 |
| MS.gene012968.t1 | MTR_7g446510 | 51.786 | 112 | 54 | 0 | 179 | 290 | 155 | 266 | 7.70e-29 | 118 |
| MS.gene012968.t1 | MTR_1g070355 | 31.818 | 176 | 117 | 2 | 105 | 277 | 74 | 249 | 7.45e-21 | 97.8 |
| MS.gene012968.t1 | MTR_5g076070 | 28.415 | 183 | 116 | 3 | 85 | 264 | 45 | 215 | 1.50e-20 | 93.2 |
| MS.gene012968.t1 | MTR_6g022080 | 27.439 | 164 | 116 | 1 | 104 | 264 | 84 | 247 | 5.18e-18 | 84.7 |
| MS.gene012968.t1 | MTR_8g035530 | 46.753 | 77 | 39 | 1 | 92 | 168 | 1 | 75 | 1.45e-16 | 75.5 |
| MS.gene012968.t1 | MTR_8g468460 | 40.000 | 100 | 57 | 2 | 309 | 408 | 9 | 105 | 2.22e-13 | 67.4 |
| MS.gene012968.t1 | MTR_0402s0040 | 29.885 | 174 | 117 | 5 | 108 | 278 | 29 | 200 | 3.05e-13 | 73.2 |
| MS.gene012968.t1 | MTR_3g450850 | 29.651 | 172 | 109 | 4 | 111 | 270 | 53 | 224 | 8.23e-13 | 70.9 |
| MS.gene012968.t1 | MTR_4g035820 | 29.121 | 182 | 120 | 4 | 111 | 285 | 81 | 260 | 2.89e-12 | 70.9 |
| MS.gene012968.t1 | MTR_6g051425 | 28.261 | 184 | 121 | 5 | 112 | 287 | 24 | 204 | 4.43e-12 | 68.6 |
| MS.gene012968.t1 | MTR_1g008290 | 31.034 | 116 | 75 | 2 | 173 | 288 | 21 | 131 | 8.62e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012968.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 5.24e-19 | 92.0 |
| MS.gene012968.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 5.39e-19 | 92.0 |
| MS.gene012968.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 6.02e-19 | 92.0 |
| MS.gene012968.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 7.16e-19 | 92.0 |
| MS.gene012968.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 7.16e-19 | 92.0 |
| MS.gene012968.t1 | AT4G38180 | 29.469 | 207 | 132 | 5 | 252 | 453 | 441 | 638 | 1.99e-18 | 90.9 |
| MS.gene012968.t1 | AT4G38180 | 30.337 | 267 | 170 | 9 | 33 | 290 | 3 | 262 | 1.17e-15 | 82.0 |
| MS.gene012968.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.35e-18 | 89.7 |
| MS.gene012968.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.35e-18 | 89.7 |
| MS.gene012968.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.35e-18 | 89.7 |
| MS.gene012968.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.35e-18 | 89.7 |
| MS.gene012968.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.35e-18 | 89.7 |
| MS.gene012968.t1 | AT3G22170 | 27.679 | 224 | 151 | 5 | 288 | 508 | 461 | 676 | 3.19e-16 | 83.6 |
| MS.gene012968.t1 | AT3G22170 | 27.679 | 224 | 151 | 5 | 288 | 508 | 461 | 676 | 3.19e-16 | 83.6 |
| MS.gene012968.t1 | AT4G38170 | 26.425 | 193 | 136 | 3 | 260 | 449 | 210 | 399 | 2.13e-15 | 80.5 |
| MS.gene012968.t1 | AT2G27110 | 26.829 | 246 | 158 | 8 | 250 | 491 | 241 | 468 | 2.14e-15 | 80.9 |
| MS.gene012968.t1 | AT2G27110 | 26.829 | 246 | 158 | 8 | 250 | 491 | 386 | 613 | 2.19e-15 | 80.9 |
| MS.gene012968.t1 | AT2G27110 | 26.829 | 246 | 158 | 8 | 250 | 491 | 386 | 613 | 2.19e-15 | 80.9 |
| MS.gene012968.t1 | AT1G10240 | 30.508 | 177 | 108 | 6 | 111 | 276 | 54 | 226 | 2.61e-12 | 70.9 |
| MS.gene012968.t1 | AT1G10240 | 30.508 | 177 | 108 | 6 | 111 | 276 | 54 | 226 | 2.61e-12 | 70.9 |
| MS.gene012968.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 8.96e-12 | 69.3 |
| MS.gene012968.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 8.96e-12 | 69.3 |
| MS.gene012968.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 343 | 506 | 1.27e-11 | 68.6 |
| MS.gene012968.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 1.28e-11 | 68.9 |
| MS.gene012968.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 1.33e-11 | 68.6 |
| MS.gene012968.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 1.33e-11 | 68.6 |
| MS.gene012968.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 414 | 577 | 1.43e-11 | 68.6 |
| MS.gene012968.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 3.63e-11 | 67.4 |
| MS.gene012968.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 3.63e-11 | 67.4 |
| MS.gene012968.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 3.66e-11 | 67.4 |
| MS.gene012968.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 9.01e-11 | 65.9 |
Find 142 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACTGATCCACCATTATT+TGG | 0.155571 | 3.4:-89700002 | None:intergenic |
| TCAATGTTGATTGTGATATT+TGG | 0.171428 | 3.4:-89699765 | None:intergenic |
| CTCTTGCAAATCAGACTTTC+AGG | 0.192125 | 3.4:-89698976 | None:intergenic |
| TCACTCAATTTACGGTAATT+AGG | 0.235603 | 3.4:-89697677 | None:intergenic |
| CCCATAGTTTCTCAATGTTT+TGG | 0.242135 | 3.4:-89700277 | None:intergenic |
| TATCAACTTCACTCAATTTA+CGG | 0.276736 | 3.4:-89697685 | None:intergenic |
| ATCACTCGCAACAAATTTAC+TGG | 0.280329 | 3.4:-89699229 | None:intergenic |
| TAACACCATACCCAACATTA+TGG | 0.313783 | 3.4:-89699953 | None:intergenic |
| AGGACTTGGGTTTATCAAAA+AGG | 0.326599 | 3.4:+89697793 | MS.gene012968:CDS |
| CAGTGTTAGAATGTGATGAT+AGG | 0.338987 | 3.4:-89700049 | None:intergenic |
| TGATAAACCCAAGTCCTTCA+TGG | 0.346028 | 3.4:-89697787 | None:intergenic |
| AGATGATGATATAAGGGATA+TGG | 0.347376 | 3.4:+89697340 | MS.gene012968:CDS |
| ACGACTTTGTTCGTACGATT+TGG | 0.356788 | 3.4:+89697588 | MS.gene012968:CDS |
| ACACCAATTCCAGCAAGTTC+TGG | 0.360337 | 3.4:-89699384 | None:intergenic |
| ATGTGACAGATGATGATATA+AGG | 0.367162 | 3.4:+89697333 | MS.gene012968:CDS |
| CTCGGAACATTGTGTGTTCC+AGG | 0.370631 | 3.4:-89700098 | None:intergenic |
| TAAGAGCGCAAGTGATTATA+AGG | 0.371814 | 3.4:+89699128 | MS.gene012968:CDS |
| TGTAAGAACATGTCATATCT+TGG | 0.387474 | 3.4:+89697739 | MS.gene012968:CDS |
| TGTTCTAATTGTAGAAATCC+TGG | 0.392101 | 3.4:+89699342 | MS.gene012968:CDS |
| CACTATGGGGTGCCAAATAA+TGG | 0.393131 | 3.4:+89699990 | MS.gene012968:CDS |
| ATCCATGTTGTCATACTTCA+TGG | 0.394339 | 3.4:-89698947 | None:intergenic |
| ACTGGAACACACAATGTTCC+TGG | 0.398163 | 3.4:+89700080 | MS.gene012968:CDS |
| ATCATTCGCAACAAATTTGT+TGG | 0.403036 | 3.4:-89699256 | None:intergenic |
| TCTAACACTGCTCTGCATAC+TGG | 0.407068 | 3.4:+89700062 | MS.gene012968:CDS |
| ATATAATTTCACGGATCATC+AGG | 0.409639 | 3.4:+89697820 | MS.gene012968:CDS |
| GATTATAAGGAGGCTCTAGA+AGG | 0.413898 | 3.4:+89699141 | MS.gene012968:CDS |
| GATTCATTATCAGACTCAAT+AGG | 0.414121 | 3.4:-89699438 | None:intergenic |
| GCACTGGTATTACACGTAAG+AGG | 0.418801 | 3.4:+89699646 | MS.gene012968:CDS |
| AACAAATACAAGCACTAGAA+AGG | 0.422563 | 3.4:+89699725 | MS.gene012968:CDS |
| TGTCCAGAACTTGCTGGAAT+TGG | 0.422787 | 3.4:+89699381 | MS.gene012968:CDS |
| AAAGTTTAAAGATGTCAAAA+AGG | 0.436388 | 3.4:+89698726 | MS.gene012968:CDS |
| TACGGTAATTAGGCATCAAA+TGG | 0.442752 | 3.4:-89697667 | None:intergenic |
| CGCAGAACAATTAGTTCGAA+TGG | 0.445789 | 3.4:-89697549 | None:intergenic |
| AAGGGTGGCCATGAAGGACT+TGG | 0.449428 | 3.4:+89697779 | MS.gene012968:CDS |
| TAAATTTGTTGCGAGTGATA+AGG | 0.460501 | 3.4:+89699233 | MS.gene012968:CDS |
| AAATGGACATGACGAGGATA+AGG | 0.462491 | 3.4:+89699206 | MS.gene012968:CDS |
| GTAAGAACATGTCATATCTT+GGG | 0.464989 | 3.4:+89697740 | MS.gene012968:CDS |
| GCGTCAATTAGTATGCAATA+AGG | 0.467578 | 3.4:+89697475 | MS.gene012968:CDS |
| AACGCAAAGGAGCTAATTCA+TGG | 0.469712 | 3.4:-89697640 | None:intergenic |
| AGTGTTAGAATGTGATGATA+GGG | 0.470693 | 3.4:-89700048 | None:intergenic |
| TTCGAATGGTTAGCGTAGAT+CGG | 0.471186 | 3.4:-89697535 | None:intergenic |
| AATAGCCGTCATGAGGGAAA+TGG | 0.477370 | 3.4:+89699189 | MS.gene012968:CDS |
| CAAGGGAAAGAGAACTTTGA+TGG | 0.478759 | 3.4:+89697293 | MS.gene012968:CDS |
| CGGACGTGTCCAGAACTTGC+TGG | 0.483560 | 3.4:+89699375 | MS.gene012968:CDS |
| AAAGGACTTATATAATTTCA+CGG | 0.493961 | 3.4:+89697811 | MS.gene012968:CDS |
| GAAATCCTGGGCACACAATA+CGG | 0.497533 | 3.4:+89699355 | MS.gene012968:CDS |
| CACTCTGTAGCAGTGTCAAA+TGG | 0.499398 | 3.4:+89699603 | MS.gene012968:CDS |
| ATGTGAAGCGTGATTCTAAT+GGG | 0.504223 | 3.4:+89697441 | MS.gene012968:CDS |
| AATGGTGTGACCCGTGACTT+TGG | 0.505092 | 3.4:+89699882 | MS.gene012968:CDS |
| GCAAGGGTTAAAATACAAGA+TGG | 0.508614 | 3.4:+89697842 | MS.gene012968:CDS |
| GGTCAAAAGGGTGGCCATGA+AGG | 0.510809 | 3.4:+89697773 | MS.gene012968:CDS |
| CCACGGGTTTGAAGTAAGAA+AGG | 0.512169 | 3.4:+89697415 | MS.gene012968:CDS |
| TTAGAACAACATCTTGTCCT+TGG | 0.513299 | 3.4:-89699327 | None:intergenic |
| TGTGATGATAGGGTAGTTGT+CGG | 0.517812 | 3.4:-89700038 | None:intergenic |
| GTATCACTATGTACATCAAA+AGG | 0.519498 | 3.4:-89697062 | None:intergenic |
| ATTTAGTCTGCAACTTGTCA+AGG | 0.524883 | 3.4:-89698864 | None:intergenic |
| CAAGGGTTAAAATACAAGAT+GGG | 0.527779 | 3.4:+89697843 | MS.gene012968:CDS |
| AACAACGATGTTCGTACTGA+TGG | 0.529175 | 3.4:+89697221 | MS.gene012968:CDS |
| AAAGTCTGATTTGCAAGAGA+TGG | 0.531904 | 3.4:+89698980 | MS.gene012968:CDS |
| GATGTGAAGCGTGATTCTAA+TGG | 0.532287 | 3.4:+89697440 | MS.gene012968:CDS |
| GTTCTAATTGTAGAAATCCT+GGG | 0.533951 | 3.4:+89699343 | MS.gene012968:CDS |
| AAGTGCCCCTCGACGAAACA+TGG | 0.534361 | 3.4:-89699070 | None:intergenic |
| CACGTCCGTATTGTGTGCCC+AGG | 0.534840 | 3.4:-89699360 | None:intergenic |
| ACAAATACAAGCACTAGAAA+GGG | 0.535750 | 3.4:+89699726 | MS.gene012968:CDS |
| GTAGTTGTCGGAGGGAATTG+TGG | 0.539742 | 3.4:-89700026 | None:intergenic |
| AATAAGGAGGGTGTTAATGA+TGG | 0.543414 | 3.4:+89697491 | MS.gene012968:CDS |
| AAGACAGCCATTGTGCAAGT+TGG | 0.545484 | 3.4:+89699928 | MS.gene012968:CDS |
| AGCTAATTCATGGTTGTGAG+AGG | 0.545517 | 3.4:-89697630 | None:intergenic |
| ACTTCATGGCACAAATAATG+TGG | 0.547507 | 3.4:-89698933 | None:intergenic |
| TCGTCATTTGCCTCCCAAGA+AGG | 0.555407 | 3.4:+89699030 | MS.gene012968:CDS |
| CACTGGTATTACACGTAAGA+GGG | 0.559146 | 3.4:+89699647 | MS.gene012968:CDS |
| GGTGTCGTGTCTGAAGATCA+AGG | 0.560464 | 3.4:+89699402 | MS.gene012968:CDS |
| CGAGATGTTGAGAAAAGCAC+TGG | 0.563759 | 3.4:+89699630 | MS.gene012968:CDS |
| TTCATCATTACCTTCTTGGG+AGG | 0.565482 | 3.4:-89699040 | None:intergenic |
| GTCTGAAGATCAAGGGGAGA+AGG | 0.567087 | 3.4:+89699410 | MS.gene012968:CDS |
| TATTGTTTGCAAAATACCAC+GGG | 0.573778 | 3.4:+89697399 | MS.gene012968:CDS |
| CCTTTGACATTCACCATCAG+TGG | 0.574175 | 3.4:-89699279 | None:intergenic |
| GTGGAATTTAACCATGGTAA+TGG | 0.576772 | 3.4:+89697257 | MS.gene012968:CDS |
| GCACAAATAATGTGGGAACA+TGG | 0.578248 | 3.4:-89698925 | None:intergenic |
| TGTGACAGATGATGATATAA+GGG | 0.581249 | 3.4:+89697334 | MS.gene012968:CDS |
| AAATGACCATGTTTCGTCGA+GGG | 0.581274 | 3.4:+89699064 | MS.gene012968:CDS |
| GTGTCGTGTCTGAAGATCAA+GGG | 0.581492 | 3.4:+89699403 | MS.gene012968:CDS |
| GCTAATTCATGGTTGTGAGA+GGG | 0.581523 | 3.4:-89697629 | None:intergenic |
| TCAATTAGTATGCAATAAGG+AGG | 0.584633 | 3.4:+89697478 | MS.gene012968:CDS |
| AATGACCATGTTTCGTCGAG+GGG | 0.585541 | 3.4:+89699065 | MS.gene012968:CDS |
| GCAAGTTGGAACCATAATGT+TGG | 0.585606 | 3.4:+89699942 | MS.gene012968:CDS |
| TAAGATAAATAGCCGTCATG+AGG | 0.585792 | 3.4:+89699182 | MS.gene012968:CDS |
| AGGGTGGCCATGAAGGACTT+GGG | 0.586883 | 3.4:+89697780 | MS.gene012968:CDS |
| GAAGCTTCAAAGATATTCAC+CGG | 0.587720 | 3.4:+89698700 | MS.gene012968:CDS |
| AAGATAAATAGCCGTCATGA+GGG | 0.587755 | 3.4:+89699183 | MS.gene012968:CDS |
| ATACTCACCGGTGTATAACT+CGG | 0.588936 | 3.4:-89700116 | None:intergenic |
| ATGATAGGGTAGTTGTCGGA+GGG | 0.591320 | 3.4:-89700034 | None:intergenic |
| ATTTCACGGATCATCAGGCA+AGG | 0.592596 | 3.4:+89697825 | MS.gene012968:CDS |
| TGGAACCATAATGTTGGGTA+TGG | 0.594448 | 3.4:+89699948 | MS.gene012968:CDS |
| CTTCATGGCACAAATAATGT+GGG | 0.594948 | 3.4:-89698932 | None:intergenic |
| TATGAGTGCGTTGAAGAATG+TGG | 0.597255 | 3.4:+89700219 | MS.gene012968:CDS |
| GAACGAGATGAAGATGAGGA+TGG | 0.598765 | 3.4:+89698781 | MS.gene012968:CDS |
| GTATTGTTTGCAAAATACCA+CGG | 0.599210 | 3.4:+89697398 | MS.gene012968:CDS |
| CAAGTTGGAACCATAATGTT+GGG | 0.599464 | 3.4:+89699943 | MS.gene012968:CDS |
| GTCAATGCAGTTGTCAGCAT+AGG | 0.607551 | 3.4:-89698664 | None:intergenic |
| AAGGGTTAAAATACAAGATG+GGG | 0.610552 | 3.4:+89697844 | MS.gene012968:CDS |
| AAACATCGCAGTGACTATTG+TGG | 0.611836 | 3.4:+89700253 | MS.gene012968:CDS |
| ATTATAAGGAGGCTCTAGAA+GGG | 0.613050 | 3.4:+89699142 | MS.gene012968:CDS |
| GACACTGATAGTGATACAGA+TGG | 0.614810 | 3.4:+89697119 | MS.gene012968:CDS |
| GCTACTTTGAGTTACTTCCA+AGG | 0.617165 | 3.4:+89697875 | MS.gene012968:CDS |
| GTTGATAAACAAGTTGCTAG+TGG | 0.617676 | 3.4:+89697701 | MS.gene012968:CDS |
| TGATAGTGATACAGATGGGG+TGG | 0.618742 | 3.4:+89697124 | MS.gene012968:CDS |
| CATGTCCATTTCCCTCATGA+CGG | 0.619225 | 3.4:-89699194 | None:intergenic |
| GATGATAGGGTAGTTGTCGG+AGG | 0.619255 | 3.4:-89700035 | None:intergenic |
| CATTGAACGAGATGAAGATG+AGG | 0.623154 | 3.4:+89698777 | MS.gene012968:CDS |
| CCACTGATGGTGAATGTCAA+AGG | 0.624002 | 3.4:+89699279 | MS.gene012968:CDS |
| TATGGTTCCAACTTGCACAA+TGG | 0.627946 | 3.4:-89699935 | None:intergenic |
| TTTCACGGATCATCAGGCAA+GGG | 0.637022 | 3.4:+89697826 | MS.gene012968:CDS |
| CCTTTCTTACTTCAAACCCG+TGG | 0.639832 | 3.4:-89697415 | None:intergenic |
| CATTGCAAACACCATTACCA+TGG | 0.642035 | 3.4:-89697268 | None:intergenic |
| TATGGGGTGCCAAATAATGG+TGG | 0.646881 | 3.4:+89699993 | MS.gene012968:CDS |
| AATGGTGTTTGCAATGAGCA+AGG | 0.648235 | 3.4:+89697275 | MS.gene012968:CDS |
| GCTAGTGGTCTACATTCGCA+AGG | 0.649023 | 3.4:+89697716 | MS.gene012968:CDS |
| ACATAGTGATACAAATGAGG+TGG | 0.649356 | 3.4:+89697073 | MS.gene012968:CDS |
| ATCAAATGGACAAAACGCAA+AGG | 0.651947 | 3.4:-89697653 | None:intergenic |
| AAAATGACCATGTTTCGTCG+AGG | 0.652304 | 3.4:+89699063 | MS.gene012968:CDS |
| ATGGTGTTTGCAATGAGCAA+GGG | 0.657603 | 3.4:+89697276 | MS.gene012968:CDS |
| TCTGTAGCAGTGTCAAATGG+TGG | 0.657609 | 3.4:+89699606 | MS.gene012968:CDS |
| TGATGGAGATGCAGACGGTG+TGG | 0.660310 | 3.4:+89697238 | MS.gene012968:CDS |
| ACACTGATAGTGATACAGAT+GGG | 0.663559 | 3.4:+89697120 | MS.gene012968:CDS |
| TGTCGTGTCTGAAGATCAAG+GGG | 0.668190 | 3.4:+89699404 | MS.gene012968:CDS |
| TGCCATGAAGTATGACAACA+TGG | 0.671427 | 3.4:+89698945 | MS.gene012968:CDS |
| TGAATGTCAAAGGTGCCCGT+AGG | 0.674674 | 3.4:+89699289 | MS.gene012968:CDS |
| CAATTAGTATGCAATAAGGA+GGG | 0.675920 | 3.4:+89697479 | MS.gene012968:CDS |
| TGTAGACGCTTTGAACGTAG+AGG | 0.677604 | 3.4:+89698898 | MS.gene012968:CDS |
| TGTACATAGTGATACAAATG+AGG | 0.679445 | 3.4:+89697070 | MS.gene012968:CDS |
| CAATGTTCCGAGTTATACAC+CGG | 0.682160 | 3.4:+89700109 | MS.gene012968:CDS |
| CATTTGACACTGCTACAGAG+TGG | 0.682675 | 3.4:-89699602 | None:intergenic |
| GAGCGCAAGTGATTATAAGG+AGG | 0.683366 | 3.4:+89699131 | MS.gene012968:CDS |
| TGTTGCGAATGATCCACTGA+TGG | 0.687875 | 3.4:+89699266 | MS.gene012968:CDS |
| GACGGTGTGGAATTTAACCA+TGG | 0.688761 | 3.4:+89697251 | MS.gene012968:CDS |
| TGAGGGAAATGGACATGACG+AGG | 0.691164 | 3.4:+89699200 | MS.gene012968:CDS |
| CGTACTGATGGAGATGCAGA+CGG | 0.711480 | 3.4:+89697233 | MS.gene012968:CDS |
| ACATAGACTATTGAACGCAG+CGG | 0.718507 | 3.4:-89699094 | None:intergenic |
| CACTGATAGTGATACAGATG+GGG | 0.724418 | 3.4:+89697121 | MS.gene012968:CDS |
| AATTATGCAAGAAATCCACA+AGG | 0.743577 | 3.4:-89698573 | None:intergenic |
| GGATATGGAATTCAACACAG+AGG | 0.763384 | 3.4:+89697355 | MS.gene012968:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTTTAATATGCACTA+TGG | + | chr3.4:89699975-89699994 | MS.gene012968:CDS | 15.0% |
| !!! | ATTATTTTAATATGCACTAT+GGG | + | chr3.4:89699976-89699995 | MS.gene012968:CDS | 15.0% |
| !!! | TCATAAACTGTTTTAAATAT+AGG | - | chr3.4:89700204-89700223 | None:intergenic | 15.0% |
| !!! | TGAAATTGTATATGATATTT+TGG | + | chr3.4:89699531-89699550 | MS.gene012968:intron | 15.0% |
| !! | AAAGGACTTATATAATTTCA+CGG | + | chr3.4:89697811-89697830 | MS.gene012968:CDS | 20.0% |
| !! | AAAGTTTAAAGATGTCAAAA+AGG | + | chr3.4:89698726-89698745 | MS.gene012968:CDS | 20.0% |
| !!! | ATTTTCAAGGTTAATGTATT+TGG | + | chr3.4:89698814-89698833 | MS.gene012968:CDS | 20.0% |
| !!! | TTATTTTAATATGCACTATG+GGG | + | chr3.4:89699977-89699996 | MS.gene012968:CDS | 20.0% |
| ! | AATTAAAGCACAAGCAAAAA+TGG | - | chr3.4:89698107-89698126 | None:intergenic | 25.0% |
| ! | ATATCCACTAAAAATGACAA+GGG | - | chr3.4:89698065-89698084 | None:intergenic | 25.0% |
| ! | CAGCAAATATACTATAACAA+AGG | - | chr3.4:89699801-89699820 | None:intergenic | 25.0% |
| ! | GATGGAAAAAATAAGAAGAA+TGG | + | chr3.4:89697509-89697528 | MS.gene012968:CDS | 25.0% |
| ! | GGTGGGTAAAAAAAATTTAT+CGG | + | chr3.4:89698431-89698450 | MS.gene012968:intron | 25.0% |
| ! | TAAACAATCAAAATACTCAC+CGG | - | chr3.4:89700131-89700150 | None:intergenic | 25.0% |
| ! | TATATCCACTAAAAATGACA+AGG | - | chr3.4:89698066-89698085 | None:intergenic | 25.0% |
| ! | TATCAACTTCACTCAATTTA+CGG | - | chr3.4:89697688-89697707 | None:intergenic | 25.0% |
| !! | CAAAAAAGATGTAGCTTTTT+CGG | + | chr3.4:89698837-89698856 | MS.gene012968:CDS | 25.0% |
| !! | GACATCTTTAAACTTTTTAC+CGG | - | chr3.4:89698722-89698741 | None:intergenic | 25.0% |
| !! | TCAATGTTGATTGTGATATT+TGG | - | chr3.4:89699768-89699787 | None:intergenic | 25.0% |
| !! | TTTTTCATCATTACCTTCTT+GGG | - | chr3.4:89699046-89699065 | None:intergenic | 25.0% |
| !!! | GGTTCTAAATTTGTTTTCAA+AGG | + | chr3.4:89698156-89698175 | MS.gene012968:intron | 25.0% |
| !!! | TTGTTTTGATTGTTGTAGAA+TGG | + | chr3.4:89699864-89699883 | MS.gene012968:intron | 25.0% |
| !!! | TTTTTTCATCATTACCTTCT+TGG | - | chr3.4:89699047-89699066 | None:intergenic | 25.0% |
| AAAACTGATCCACCATTATT+TGG | - | chr3.4:89700005-89700024 | None:intergenic | 30.0% | |
| AAACAATAGAGACATACAAG+TGG | + | chr3.4:89698134-89698153 | MS.gene012968:intron | 30.0% | |
| AACAAATACAAGCACTAGAA+AGG | + | chr3.4:89699725-89699744 | MS.gene012968:CDS | 30.0% | |
| AACAATAGAGACATACAAGT+GGG | + | chr3.4:89698135-89698154 | MS.gene012968:intron | 30.0% | |
| AAGGGTTAAAATACAAGATG+GGG | + | chr3.4:89697844-89697863 | MS.gene012968:CDS | 30.0% | |
| AATTATGCAAGAAATCCACA+AGG | - | chr3.4:89698576-89698595 | None:intergenic | 30.0% | |
| ACAAATACAAGCACTAGAAA+GGG | + | chr3.4:89699726-89699745 | MS.gene012968:CDS | 30.0% | |
| ACCTATAGAAAGAACAAGTA+TGG | + | chr3.4:89698034-89698053 | MS.gene012968:intron | 30.0% | |
| AGATGATGATATAAGGGATA+TGG | + | chr3.4:89697340-89697359 | MS.gene012968:CDS | 30.0% | |
| AGTGTTAGAATGTGATGATA+GGG | - | chr3.4:89700051-89700070 | None:intergenic | 30.0% | |
| ATACTTGTTCTTTCTATAGG+TGG | - | chr3.4:89698035-89698054 | None:intergenic | 30.0% | |
| ATATAATTTCACGGATCATC+AGG | + | chr3.4:89697820-89697839 | MS.gene012968:CDS | 30.0% | |
| ATCATTCGCAACAAATTTGT+TGG | - | chr3.4:89699259-89699278 | None:intergenic | 30.0% | |
| ATGTGACAGATGATGATATA+AGG | + | chr3.4:89697333-89697352 | MS.gene012968:CDS | 30.0% | |
| CAAGGGTTAAAATACAAGAT+GGG | + | chr3.4:89697843-89697862 | MS.gene012968:CDS | 30.0% | |
| CAATTAGTATGCAATAAGGA+GGG | + | chr3.4:89697479-89697498 | MS.gene012968:CDS | 30.0% | |
| GAGTTTACATTTACAGATGA+TGG | + | chr3.4:89697929-89697948 | MS.gene012968:intron | 30.0% | |
| GATTCATTATCAGACTCAAT+AGG | - | chr3.4:89699441-89699460 | None:intergenic | 30.0% | |
| GTAAGAACATGTCATATCTT+GGG | + | chr3.4:89697740-89697759 | MS.gene012968:CDS | 30.0% | |
| GTATCACTATGTACATCAAA+AGG | - | chr3.4:89697065-89697084 | None:intergenic | 30.0% | |
| GTATTGTTTGCAAAATACCA+CGG | + | chr3.4:89697398-89697417 | MS.gene012968:CDS | 30.0% | |
| GTTCTAATTGTAGAAATCCT+GGG | + | chr3.4:89699343-89699362 | MS.gene012968:CDS | 30.0% | |
| TATCCACTAAAAATGACAAG+GGG | - | chr3.4:89698064-89698083 | None:intergenic | 30.0% | |
| TATTGTTTGCAAAATACCAC+GGG | + | chr3.4:89697399-89697418 | MS.gene012968:CDS | 30.0% | |
| TCAATTAGTATGCAATAAGG+AGG | + | chr3.4:89697478-89697497 | MS.gene012968:CDS | 30.0% | |
| TCACTCAATTTACGGTAATT+AGG | - | chr3.4:89697680-89697699 | None:intergenic | 30.0% | |
| TCCATACTTGTTCTTTCTAT+AGG | - | chr3.4:89698038-89698057 | None:intergenic | 30.0% | |
| TGTAAGAACATGTCATATCT+TGG | + | chr3.4:89697739-89697758 | MS.gene012968:CDS | 30.0% | |
| TGTACATAGTGATACAAATG+AGG | + | chr3.4:89697070-89697089 | MS.gene012968:CDS | 30.0% | |
| TGTGACAGATGATGATATAA+GGG | + | chr3.4:89697334-89697353 | MS.gene012968:CDS | 30.0% | |
| TGTTCTAATTGTAGAAATCC+TGG | + | chr3.4:89699342-89699361 | MS.gene012968:CDS | 30.0% | |
| TTCTAACACCACACAAAAAA+TGG | - | chr3.4:89698492-89698511 | None:intergenic | 30.0% | |
| ! | ATTTTTCATGTCCAAAGTCA+CGG | - | chr3.4:89699896-89699915 | None:intergenic | 30.0% |
| ! | TTTTGGATGTTTGTCATACA+TGG | - | chr3.4:89698182-89698201 | None:intergenic | 30.0% |
| !! | ATTTTGACCTATCAAACAAC+AGG | + | chr3.4:89698410-89698429 | MS.gene012968:intron | 30.0% |
| !! | TAAATTTGTTGCGAGTGATA+AGG | + | chr3.4:89699233-89699252 | MS.gene012968:CDS | 30.0% |
| !!! | ACGCCTAGAAAACATTTTTT+GGG | + | chr3.4:89697952-89697971 | MS.gene012968:intron | 30.0% |
| !!! | CATATCTTGGGTTTTTTGAT+GGG | + | chr3.4:89697752-89697771 | MS.gene012968:CDS | 30.0% |
| !!! | TCATATCTTGGGTTTTTTGA+TGG | + | chr3.4:89697751-89697770 | MS.gene012968:CDS | 30.0% |
| !!! | TGGAAACATTGTCATTTTCA+AGG | + | chr3.4:89698801-89698820 | MS.gene012968:CDS | 30.0% |
| AAGATAAATAGCCGTCATGA+GGG | + | chr3.4:89699183-89699202 | MS.gene012968:CDS | 35.0% | |
| ACATAGTGATACAAATGAGG+TGG | + | chr3.4:89697073-89697092 | MS.gene012968:CDS | 35.0% | |
| ACTTCATGGCACAAATAATG+TGG | - | chr3.4:89698936-89698955 | None:intergenic | 35.0% | |
| AGGACTTGGGTTTATCAAAA+AGG | + | chr3.4:89697793-89697812 | MS.gene012968:CDS | 35.0% | |
| ATCAAATGGACAAAACGCAA+AGG | - | chr3.4:89697656-89697675 | None:intergenic | 35.0% | |
| ATCACTCGCAACAAATTTAC+TGG | - | chr3.4:89699232-89699251 | None:intergenic | 35.0% | |
| ATCCATGTTGTCATACTTCA+TGG | - | chr3.4:89698950-89698969 | None:intergenic | 35.0% | |
| ATGTGAAGCGTGATTCTAAT+GGG | + | chr3.4:89697441-89697460 | MS.gene012968:CDS | 35.0% | |
| ATTTAGTCTGCAACTTGTCA+AGG | - | chr3.4:89698867-89698886 | None:intergenic | 35.0% | |
| CAGTGTTAGAATGTGATGAT+AGG | - | chr3.4:89700052-89700071 | None:intergenic | 35.0% | |
| CTGAAAAGTTTGAATCTGAG+TGG | + | chr3.4:89698371-89698390 | MS.gene012968:intron | 35.0% | |
| CTTCATGGCACAAATAATGT+GGG | - | chr3.4:89698935-89698954 | None:intergenic | 35.0% | |
| GAAGCTTCAAAGATATTCAC+CGG | + | chr3.4:89698700-89698719 | MS.gene012968:CDS | 35.0% | |
| GAGTTGTGTTTCCAAATACA+AGG | + | chr3.4:89698245-89698264 | MS.gene012968:intron | 35.0% | |
| GCAAGGGTTAAAATACAAGA+TGG | + | chr3.4:89697842-89697861 | MS.gene012968:CDS | 35.0% | |
| GCGTCAATTAGTATGCAATA+AGG | + | chr3.4:89697475-89697494 | MS.gene012968:CDS | 35.0% | |
| GTATGACAAACATCCAAAAG+CGG | + | chr3.4:89698183-89698202 | MS.gene012968:intron | 35.0% | |
| GTGGAATTTAACCATGGTAA+TGG | + | chr3.4:89697257-89697276 | MS.gene012968:CDS | 35.0% | |
| TAACACCATACCCAACATTA+TGG | - | chr3.4:89699956-89699975 | None:intergenic | 35.0% | |
| TAAGATAAATAGCCGTCATG+AGG | + | chr3.4:89699182-89699201 | MS.gene012968:CDS | 35.0% | |
| TACGGTAATTAGGCATCAAA+TGG | - | chr3.4:89697670-89697689 | None:intergenic | 35.0% | |
| TATCATTACTCATAGACAGC+TGG | - | chr3.4:89699569-89699588 | None:intergenic | 35.0% | |
| TTAGAACAACATCTTGTCCT+TGG | - | chr3.4:89699330-89699349 | None:intergenic | 35.0% | |
| ! | AAAGTCTGATTTGCAAGAGA+TGG | + | chr3.4:89698980-89698999 | MS.gene012968:CDS | 35.0% |
| ! | ACACTGATAGTGATACAGAT+GGG | + | chr3.4:89697120-89697139 | MS.gene012968:CDS | 35.0% |
| ! | AGGTTTGACTATGAGTGTTT+TGG | + | chr3.4:89697989-89698008 | MS.gene012968:intron | 35.0% |
| ! | CAAGTTGGAACCATAATGTT+GGG | + | chr3.4:89699943-89699962 | MS.gene012968:CDS | 35.0% |
| ! | CACTCAGATTCAAACTTTTC+AGG | - | chr3.4:89698373-89698392 | None:intergenic | 35.0% |
| ! | CTGCCCAAAAAATGTTTTCT+AGG | - | chr3.4:89697958-89697977 | None:intergenic | 35.0% |
| ! | GTTGATAAACAAGTTGCTAG+TGG | + | chr3.4:89697701-89697720 | MS.gene012968:CDS | 35.0% |
| ! | TAAGAGCGCAAGTGATTATA+AGG | + | chr3.4:89699128-89699147 | MS.gene012968:CDS | 35.0% |
| ! | TTATCGGTTGAAGAGAATGT+GGG | + | chr3.4:89698447-89698466 | MS.gene012968:intron | 35.0% |
| ! | TTTAGTGGATATAACCACCA+TGG | + | chr3.4:89698073-89698092 | MS.gene012968:intron | 35.0% |
| ! | TTTATCGGTTGAAGAGAATG+TGG | + | chr3.4:89698446-89698465 | MS.gene012968:intron | 35.0% |
| ! | TTTGAGTTACTTCCAAGGTA+AGG | + | chr3.4:89697880-89697899 | MS.gene012968:intron | 35.0% |
| ! | TTTTTCATGTCCAAAGTCAC+GGG | - | chr3.4:89699895-89699914 | None:intergenic | 35.0% |
| !! | AATAAGGAGGGTGTTAATGA+TGG | + | chr3.4:89697491-89697510 | MS.gene012968:CDS | 35.0% |
| !! | ATTATAAGGAGGCTCTAGAA+GGG | + | chr3.4:89699142-89699161 | MS.gene012968:CDS | 35.0% |
| !! | CAAAAATGGTTGTTTCTCCA+TGG | - | chr3.4:89698093-89698112 | None:intergenic | 35.0% |
| !! | TGCTGAAAATTGTGTTGCTT+TGG | + | chr3.4:89699816-89699835 | MS.gene012968:intron | 35.0% |
| !!! | AAACCCCTTGTCATTTTTAG+TGG | + | chr3.4:89698058-89698077 | MS.gene012968:intron | 35.0% |
| !!! | GACGCCTAGAAAACATTTTT+TGG | + | chr3.4:89697951-89697970 | MS.gene012968:intron | 35.0% |
| !!! | GGTTTTTTGATGGGTCAAAA+GGG | + | chr3.4:89697761-89697780 | MS.gene012968:CDS | 35.0% |
| !!! | GTGTTGACTTTTTACTCCTA+CGG | - | chr3.4:89699308-89699327 | None:intergenic | 35.0% |
| !!! | TCAAACTTTTCAGGTGTACA+AGG | - | chr3.4:89698364-89698383 | None:intergenic | 35.0% |
| !!! | TGTTGACTTTTTACTCCTAC+GGG | - | chr3.4:89699307-89699326 | None:intergenic | 35.0% |
| AAAAGCGGTGATTACTGATG+GGG | + | chr3.4:89698198-89698217 | MS.gene012968:intron | 40.0% | |
| AAAATGACCATGTTTCGTCG+AGG | + | chr3.4:89699063-89699082 | MS.gene012968:CDS | 40.0% | |
| AAACATCGCAGTGACTATTG+TGG | + | chr3.4:89700253-89700272 | MS.gene012968:CDS | 40.0% | |
| AAATGACCATGTTTCGTCGA+GGG | + | chr3.4:89699064-89699083 | MS.gene012968:CDS | 40.0% | |
| AAATGGACATGACGAGGATA+AGG | + | chr3.4:89699206-89699225 | MS.gene012968:CDS | 40.0% | |
| AACAACGATGTTCGTACTGA+TGG | + | chr3.4:89697221-89697240 | MS.gene012968:CDS | 40.0% | |
| AACGCAAAGGAGCTAATTCA+TGG | - | chr3.4:89697643-89697662 | None:intergenic | 40.0% | |
| AATGGTGTTTGCAATGAGCA+AGG | + | chr3.4:89697275-89697294 | MS.gene012968:CDS | 40.0% | |
| ACATAGACTATTGAACGCAG+CGG | - | chr3.4:89699097-89699116 | None:intergenic | 40.0% | |
| ACGACTTTGTTCGTACGATT+TGG | + | chr3.4:89697588-89697607 | MS.gene012968:CDS | 40.0% | |
| AGAACGACATCAATCTGTGA+AGG | + | chr3.4:89698508-89698527 | MS.gene012968:intron | 40.0% | |
| AGATGTCAAAAAGGCGATAG+AGG | + | chr3.4:89698735-89698754 | MS.gene012968:CDS | 40.0% | |
| AGCTAATTCATGGTTGTGAG+AGG | - | chr3.4:89697633-89697652 | None:intergenic | 40.0% | |
| AGTTTGAATCTGAGTGGAAG+AGG | + | chr3.4:89698377-89698396 | MS.gene012968:intron | 40.0% | |
| ATACTCACCGGTGTATAACT+CGG | - | chr3.4:89700119-89700138 | None:intergenic | 40.0% | |
| ATGGTGTTTGCAATGAGCAA+GGG | + | chr3.4:89697276-89697295 | MS.gene012968:CDS | 40.0% | |
| CAAAAGCGGTGATTACTGAT+GGG | + | chr3.4:89698197-89698216 | MS.gene012968:intron | 40.0% | |
| CAAGGGAAAGAGAACTTTGA+TGG | + | chr3.4:89697293-89697312 | MS.gene012968:CDS | 40.0% | |
| CAATGTTCCGAGTTATACAC+CGG | + | chr3.4:89700109-89700128 | MS.gene012968:CDS | 40.0% | |
| CACTGGTATTACACGTAAGA+GGG | + | chr3.4:89699647-89699666 | MS.gene012968:CDS | 40.0% | |
| CATTGAACGAGATGAAGATG+AGG | + | chr3.4:89698777-89698796 | MS.gene012968:CDS | 40.0% | |
| CATTGCAAACACCATTACCA+TGG | - | chr3.4:89697271-89697290 | None:intergenic | 40.0% | |
| CGCAGAACAATTAGTTCGAA+TGG | - | chr3.4:89697552-89697571 | None:intergenic | 40.0% | |
| CTCTTGCAAATCAGACTTTC+AGG | - | chr3.4:89698979-89698998 | None:intergenic | 40.0% | |
| GATGTGAAGCGTGATTCTAA+TGG | + | chr3.4:89697440-89697459 | MS.gene012968:CDS | 40.0% | |
| GCACAAATAATGTGGGAACA+TGG | - | chr3.4:89698928-89698947 | None:intergenic | 40.0% | |
| GCTAATTCATGGTTGTGAGA+GGG | - | chr3.4:89697632-89697651 | None:intergenic | 40.0% | |
| GGAGTAAAAAGTCAACACCA+AGG | + | chr3.4:89699310-89699329 | MS.gene012968:CDS | 40.0% | |
| GGATATGGAATTCAACACAG+AGG | + | chr3.4:89697355-89697374 | MS.gene012968:CDS | 40.0% | |
| GTTTGAATCTGAGTGGAAGA+GGG | + | chr3.4:89698378-89698397 | MS.gene012968:intron | 40.0% | |
| TATCAGTATCAGCCTTACCT+TGG | - | chr3.4:89697895-89697914 | None:intergenic | 40.0% | |
| TATGAGTGCGTTGAAGAATG+TGG | + | chr3.4:89700219-89700238 | MS.gene012968:CDS | 40.0% | |
| TATGGTTCCAACTTGCACAA+TGG | - | chr3.4:89699938-89699957 | None:intergenic | 40.0% | |
| TGACCTATCAAACAACAGGT+GGG | + | chr3.4:89698414-89698433 | MS.gene012968:intron | 40.0% | |
| TGATAAACCCAAGTCCTTCA+TGG | - | chr3.4:89697790-89697809 | None:intergenic | 40.0% | |
| TGCCATGAAGTATGACAACA+TGG | + | chr3.4:89698945-89698964 | MS.gene012968:CDS | 40.0% | |
| TGGAACCATAATGTTGGGTA+TGG | + | chr3.4:89699948-89699967 | MS.gene012968:CDS | 40.0% | |
| TGTGATGATAGGGTAGTTGT+CGG | - | chr3.4:89700041-89700060 | None:intergenic | 40.0% | |
| TTCATCATTACCTTCTTGGG+AGG | - | chr3.4:89699043-89699062 | None:intergenic | 40.0% | |
| TTCGAATGGTTAGCGTAGAT+CGG | - | chr3.4:89697538-89697557 | None:intergenic | 40.0% | |
| TTGACCTATCAAACAACAGG+TGG | + | chr3.4:89698413-89698432 | MS.gene012968:intron | 40.0% | |
| TTTGGGCAGATTCTACTAGT+AGG | + | chr3.4:89697969-89697988 | MS.gene012968:intron | 40.0% | |
| ! | CACTGATAGTGATACAGATG+GGG | + | chr3.4:89697121-89697140 | MS.gene012968:CDS | 40.0% |
| ! | GACACTGATAGTGATACAGA+TGG | + | chr3.4:89697119-89697138 | MS.gene012968:CDS | 40.0% |
| ! | GCAAGTTGGAACCATAATGT+TGG | + | chr3.4:89699942-89699961 | MS.gene012968:CDS | 40.0% |
| ! | GCTACTTTGAGTTACTTCCA+AGG | + | chr3.4:89697875-89697894 | MS.gene012968:CDS | 40.0% |
| ! | TTACCCACCTGTTGTTTGAT+AGG | - | chr3.4:89698420-89698439 | None:intergenic | 40.0% |
| !! | AAATGGTTGTTTCTCCATGG+TGG | - | chr3.4:89698090-89698109 | None:intergenic | 40.0% |
| !! | GATTATAAGGAGGCTCTAGA+AGG | + | chr3.4:89699141-89699160 | MS.gene012968:CDS | 40.0% |
| !! | TTTTTGATGGGTCAAAAGGG+TGG | + | chr3.4:89697764-89697783 | MS.gene012968:CDS | 40.0% |
| !!! | ATGCGAGACCATTTTTTGTG+TGG | + | chr3.4:89698481-89698500 | MS.gene012968:intron | 40.0% |
| !!! | GGGTTTTTTGATGGGTCAAA+AGG | + | chr3.4:89697760-89697779 | MS.gene012968:CDS | 40.0% |
| AAGACAGCCATTGTGCAAGT+TGG | + | chr3.4:89699928-89699947 | MS.gene012968:CDS | 45.0% | |
| AATAGCCGTCATGAGGGAAA+TGG | + | chr3.4:89699189-89699208 | MS.gene012968:CDS | 45.0% | |
| AATGACCATGTTTCGTCGAG+GGG | + | chr3.4:89699065-89699084 | MS.gene012968:CDS | 45.0% | |
| ACACCAATTCCAGCAAGTTC+TGG | - | chr3.4:89699387-89699406 | None:intergenic | 45.0% | |
| ACTGGAACACACAATGTTCC+TGG | + | chr3.4:89700080-89700099 | MS.gene012968:CDS | 45.0% | |
| AGCATTTCGATGCAAATGCC+AGG | - | chr3.4:89698284-89698303 | None:intergenic | 45.0% | |
| ATGATAGGGTAGTTGTCGGA+GGG | - | chr3.4:89700037-89700056 | None:intergenic | 45.0% | |
| ATTTCACGGATCATCAGGCA+AGG | + | chr3.4:89697825-89697844 | MS.gene012968:CDS | 45.0% | |
| CAAAGGCGATGCCTTGTATT+TGG | - | chr3.4:89698259-89698278 | None:intergenic | 45.0% | |
| CACTCTGTAGCAGTGTCAAA+TGG | + | chr3.4:89699603-89699622 | MS.gene012968:CDS | 45.0% | |
| CATGTCCATTTCCCTCATGA+CGG | - | chr3.4:89699197-89699216 | None:intergenic | 45.0% | |
| CATTTGACACTGCTACAGAG+TGG | - | chr3.4:89699605-89699624 | None:intergenic | 45.0% | |
| CCAAAAGCGGTGATTACTGA+TGG | + | chr3.4:89698196-89698215 | MS.gene012968:intron | 45.0% | |
| CCTTTCTTACTTCAAACCCG+TGG | - | chr3.4:89697418-89697437 | None:intergenic | 45.0% | |
| CCTTTGACATTCACCATCAG+TGG | - | chr3.4:89699282-89699301 | None:intergenic | 45.0% | |
| GAAATCCTGGGCACACAATA+CGG | + | chr3.4:89699355-89699374 | MS.gene012968:CDS | 45.0% | |
| GAACGAGATGAAGATGAGGA+TGG | + | chr3.4:89698781-89698800 | MS.gene012968:CDS | 45.0% | |
| GACGGTGTGGAATTTAACCA+TGG | + | chr3.4:89697251-89697270 | MS.gene012968:CDS | 45.0% | |
| GAGCGCAAGTGATTATAAGG+AGG | + | chr3.4:89699131-89699150 | MS.gene012968:CDS | 45.0% | |
| GTCAATGCAGTTGTCAGCAT+AGG | - | chr3.4:89698667-89698686 | None:intergenic | 45.0% | |
| GTGTCGTGTCTGAAGATCAA+GGG | + | chr3.4:89699403-89699422 | MS.gene012968:CDS | 45.0% | |
| TCTAACACTGCTCTGCATAC+TGG | + | chr3.4:89700062-89700081 | MS.gene012968:CDS | 45.0% | |
| TCTGTAGCAGTGTCAAATGG+TGG | + | chr3.4:89699606-89699625 | MS.gene012968:CDS | 45.0% | |
| TGTCGTGTCTGAAGATCAAG+GGG | + | chr3.4:89699404-89699423 | MS.gene012968:CDS | 45.0% | |
| TGTTGCGAATGATCCACTGA+TGG | + | chr3.4:89699266-89699285 | MS.gene012968:CDS | 45.0% | |
| TTTCACGGATCATCAGGCAA+GGG | + | chr3.4:89697826-89697845 | MS.gene012968:CDS | 45.0% | |
| ! | CACTATGGGGTGCCAAATAA+TGG | + | chr3.4:89699990-89700009 | MS.gene012968:CDS | 45.0% |
| ! | CCACGGGTTTGAAGTAAGAA+AGG | + | chr3.4:89697415-89697434 | MS.gene012968:CDS | 45.0% |
| ! | CCACTGATGGTGAATGTCAA+AGG | + | chr3.4:89699279-89699298 | MS.gene012968:CDS | 45.0% |
| ! | CCATCAGTAATCACCGCTTT+TGG | - | chr3.4:89698199-89698218 | None:intergenic | 45.0% |
| ! | CGAGATGTTGAGAAAAGCAC+TGG | + | chr3.4:89699630-89699649 | MS.gene012968:CDS | 45.0% |
| ! | GCACTGGTATTACACGTAAG+AGG | + | chr3.4:89699646-89699665 | MS.gene012968:CDS | 45.0% |
| ! | TATGGGGTGCCAAATAATGG+TGG | + | chr3.4:89699993-89700012 | MS.gene012968:CDS | 45.0% |
| ! | TGATAGTGATACAGATGGGG+TGG | + | chr3.4:89697124-89697143 | MS.gene012968:CDS | 45.0% |
| ! | TGTAGACGCTTTGAACGTAG+AGG | + | chr3.4:89698898-89698917 | MS.gene012968:CDS | 45.0% |
| !! | TGTCCAGAACTTGCTGGAAT+TGG | + | chr3.4:89699381-89699400 | MS.gene012968:CDS | 45.0% |
| !!! | CCACAAGGCTGTTTTTGTGT+CGG | - | chr3.4:89698561-89698580 | None:intergenic | 45.0% |
| AATGGTGTGACCCGTGACTT+TGG | + | chr3.4:89699882-89699901 | MS.gene012968:CDS | 50.0% | |
| CCGACACAAAAACAGCCTTG+TGG | + | chr3.4:89698558-89698577 | MS.gene012968:CDS | 50.0% | |
| CTCGGAACATTGTGTGTTCC+AGG | - | chr3.4:89700101-89700120 | None:intergenic | 50.0% | |
| GATGATAGGGTAGTTGTCGG+AGG | - | chr3.4:89700038-89700057 | None:intergenic | 50.0% | |
| GCTAGTGGTCTACATTCGCA+AGG | + | chr3.4:89697716-89697735 | MS.gene012968:CDS | 50.0% | |
| GTAGTTGTCGGAGGGAATTG+TGG | - | chr3.4:89700029-89700048 | None:intergenic | 50.0% | |
| GTCTGAAGATCAAGGGGAGA+AGG | + | chr3.4:89699410-89699429 | MS.gene012968:CDS | 50.0% | |
| TCGTCATTTGCCTCCCAAGA+AGG | + | chr3.4:89699030-89699049 | MS.gene012968:CDS | 50.0% | |
| TGAGGGAAATGGACATGACG+AGG | + | chr3.4:89699200-89699219 | MS.gene012968:CDS | 50.0% | |
| ! | CGTACTGATGGAGATGCAGA+CGG | + | chr3.4:89697233-89697252 | MS.gene012968:CDS | 50.0% |
| ! | GGTGTCGTGTCTGAAGATCA+AGG | + | chr3.4:89699402-89699421 | MS.gene012968:CDS | 50.0% |
| !! | TGAATGTCAAAGGTGCCCGT+AGG | + | chr3.4:89699289-89699308 | MS.gene012968:CDS | 50.0% |
| AAGGGTGGCCATGAAGGACT+TGG | + | chr3.4:89697779-89697798 | MS.gene012968:CDS | 55.0% | |
| AAGTGCCCCTCGACGAAACA+TGG | - | chr3.4:89699073-89699092 | None:intergenic | 55.0% | |
| AGGGTGGCCATGAAGGACTT+GGG | + | chr3.4:89697780-89697799 | MS.gene012968:CDS | 55.0% | |
| GATGCAAATGCCAGGCGCAA+AGG | - | chr3.4:89698276-89698295 | None:intergenic | 55.0% | |
| GGTCAAAAGGGTGGCCATGA+AGG | + | chr3.4:89697773-89697792 | MS.gene012968:CDS | 55.0% | |
| TGATGGAGATGCAGACGGTG+TGG | + | chr3.4:89697238-89697257 | MS.gene012968:CDS | 55.0% | |
| CACGTCCGTATTGTGTGCCC+AGG | - | chr3.4:89699363-89699382 | None:intergenic | 60.0% | |
| CGGACGTGTCCAGAACTTGC+TGG | + | chr3.4:89699375-89699394 | MS.gene012968:CDS | 60.0% | |
| !! | CAAGGCATCGCCTTTGCGCC+TGG | + | chr3.4:89698263-89698282 | MS.gene012968:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 89697035 | 89700288 | 89697035 | ID=MS.gene012968 |
| chr3.4 | mRNA | 89697035 | 89700288 | 89697035 | ID=MS.gene012968.t1;Parent=MS.gene012968 |
| chr3.4 | exon | 89697035 | 89697896 | 89697035 | ID=MS.gene012968.t1.exon1;Parent=MS.gene012968.t1 |
| chr3.4 | CDS | 89697035 | 89697896 | 89697035 | ID=cds.MS.gene012968.t1;Parent=MS.gene012968.t1 |
| chr3.4 | exon | 89698533 | 89699473 | 89698533 | ID=MS.gene012968.t1.exon2;Parent=MS.gene012968.t1 |
| chr3.4 | CDS | 89698533 | 89699473 | 89698533 | ID=cds.MS.gene012968.t1;Parent=MS.gene012968.t1 |
| chr3.4 | exon | 89699570 | 89699791 | 89699570 | ID=MS.gene012968.t1.exon3;Parent=MS.gene012968.t1 |
| chr3.4 | CDS | 89699570 | 89699791 | 89699570 | ID=cds.MS.gene012968.t1;Parent=MS.gene012968.t1 |
| chr3.4 | exon | 89699882 | 89700130 | 89699882 | ID=MS.gene012968.t1.exon4;Parent=MS.gene012968.t1 |
| chr3.4 | CDS | 89699882 | 89700130 | 89699882 | ID=cds.MS.gene012968.t1;Parent=MS.gene012968.t1 |
| chr3.4 | exon | 89700217 | 89700288 | 89700217 | ID=MS.gene012968.t1.exon5;Parent=MS.gene012968.t1 |
| chr3.4 | CDS | 89700217 | 89700288 | 89700217 | ID=cds.MS.gene012968.t1;Parent=MS.gene012968.t1 |
| Gene Sequence |
| Protein sequence |
