Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012969.t1 | XP_003603058.1 | 96.2 | 373 | 13 | 1 | 1 | 372 | 1 | 373 | 1.50E-207 | 731.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012969.t1 | Q9C635 | 50.4 | 389 | 133 | 11 | 1 | 371 | 1 | 347 | 9.6e-78 | 292.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012969.t1 | G7J6F2 | 96.2 | 373 | 13 | 1 | 1 | 372 | 1 | 373 | 1.1e-207 | 731.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene012969.t1 | TF | HSF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012969.t1 | MTR_3g101870 | 96.247 | 373 | 13 | 1 | 1 | 372 | 1 | 373 | 0.0 | 743 |
| MS.gene012969.t1 | MTR_5g089170 | 47.337 | 338 | 87 | 11 | 1 | 335 | 1 | 250 | 1.81e-87 | 265 |
| MS.gene012969.t1 | MTR_5g010680 | 47.391 | 230 | 107 | 5 | 1 | 228 | 1 | 218 | 8.35e-59 | 194 |
| MS.gene012969.t1 | MTR_0020s0020 | 46.429 | 224 | 89 | 5 | 15 | 227 | 24 | 227 | 3.00e-55 | 185 |
| MS.gene012969.t1 | MTR_5g017470 | 44.796 | 221 | 85 | 5 | 17 | 229 | 2 | 193 | 5.46e-51 | 172 |
| MS.gene012969.t1 | MTR_1g100777 | 42.326 | 215 | 95 | 2 | 16 | 229 | 10 | 196 | 6.84e-51 | 172 |
| MS.gene012969.t1 | MTR_7g091370 | 39.744 | 234 | 91 | 5 | 9 | 237 | 2 | 190 | 1.64e-47 | 161 |
| MS.gene012969.t1 | MTR_6g043060 | 74.194 | 93 | 24 | 0 | 23 | 115 | 21 | 113 | 3.59e-46 | 160 |
| MS.gene012969.t1 | MTR_5g029680 | 72.632 | 95 | 26 | 0 | 21 | 115 | 29 | 123 | 3.31e-44 | 159 |
| MS.gene012969.t1 | MTR_7g095680 | 69.388 | 98 | 30 | 0 | 18 | 115 | 43 | 140 | 4.09e-43 | 154 |
| MS.gene012969.t1 | MTR_8g083100 | 72.527 | 91 | 25 | 0 | 25 | 115 | 23 | 113 | 1.86e-41 | 152 |
| MS.gene012969.t1 | MTR_1g102860 | 65.049 | 103 | 36 | 0 | 18 | 120 | 34 | 136 | 8.60e-41 | 146 |
| MS.gene012969.t1 | MTR_1g061170 | 66.667 | 99 | 33 | 0 | 24 | 122 | 49 | 147 | 9.70e-40 | 147 |
| MS.gene012969.t1 | MTR_8g087540 | 64.646 | 99 | 34 | 1 | 17 | 115 | 6 | 103 | 2.18e-39 | 144 |
| MS.gene012969.t1 | MTR_4g077970 | 42.487 | 193 | 63 | 4 | 24 | 216 | 12 | 156 | 1.03e-38 | 144 |
| MS.gene012969.t1 | MTR_1g071360 | 64.078 | 103 | 36 | 1 | 22 | 123 | 30 | 132 | 4.58e-38 | 140 |
| MS.gene012969.t1 | MTR_2g100680 | 65.957 | 94 | 32 | 0 | 22 | 115 | 29 | 122 | 6.93e-38 | 141 |
| MS.gene012969.t1 | MTR_1g071360 | 64.078 | 103 | 36 | 1 | 22 | 123 | 27 | 129 | 7.86e-38 | 140 |
| MS.gene012969.t1 | MTR_6g086805 | 62.105 | 95 | 36 | 0 | 21 | 115 | 8 | 102 | 1.21e-36 | 136 |
| MS.gene012969.t1 | MTR_2g100670 | 65.957 | 94 | 32 | 0 | 22 | 115 | 31 | 124 | 2.14e-36 | 134 |
| MS.gene012969.t1 | MTR_3g104550 | 56.757 | 111 | 43 | 1 | 18 | 123 | 40 | 150 | 2.22e-36 | 136 |
| MS.gene012969.t1 | MTR_2g017890 | 61.000 | 100 | 38 | 1 | 17 | 116 | 9 | 107 | 6.01e-36 | 135 |
| MS.gene012969.t1 | MTR_2g100670 | 65.957 | 94 | 32 | 0 | 22 | 115 | 139 | 232 | 2.47e-35 | 134 |
| MS.gene012969.t1 | MTR_4g088900 | 58.000 | 100 | 38 | 1 | 21 | 116 | 30 | 129 | 2.09e-34 | 126 |
| MS.gene012969.t1 | MTR_8g105780 | 62.766 | 94 | 34 | 1 | 23 | 115 | 21 | 114 | 5.52e-33 | 127 |
| MS.gene012969.t1 | MTR_4g045757 | 56.923 | 65 | 28 | 0 | 17 | 81 | 7 | 71 | 1.73e-18 | 79.7 |
| MS.gene012969.t1 | MTR_5g047190 | 40.217 | 92 | 48 | 2 | 32 | 116 | 1 | 92 | 3.06e-15 | 71.2 |
| MS.gene012969.t1 | MTR_4g011850 | 87.879 | 33 | 4 | 0 | 84 | 116 | 9 | 41 | 6.26e-15 | 71.6 |
| MS.gene012969.t1 | MTR_4g011850 | 78.378 | 37 | 8 | 0 | 193 | 229 | 63 | 99 | 5.80e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012969.t1 | AT1G46264 | 55.443 | 395 | 104 | 14 | 1 | 371 | 1 | 347 | 2.43e-120 | 352 |
| MS.gene012969.t1 | AT4G11660 | 49.533 | 214 | 105 | 2 | 16 | 227 | 51 | 263 | 9.45e-60 | 197 |
| MS.gene012969.t1 | AT5G62020 | 44.726 | 237 | 109 | 4 | 17 | 253 | 16 | 230 | 3.09e-58 | 191 |
| MS.gene012969.t1 | AT4G36990 | 45.794 | 214 | 89 | 2 | 17 | 230 | 7 | 193 | 6.52e-54 | 179 |
| MS.gene012969.t1 | AT1G32330 | 43.627 | 204 | 54 | 3 | 21 | 216 | 34 | 184 | 1.24e-45 | 163 |
| MS.gene012969.t1 | AT1G32330 | 43.627 | 204 | 54 | 3 | 21 | 216 | 34 | 184 | 1.29e-45 | 163 |
| MS.gene012969.t1 | AT2G41690 | 41.905 | 210 | 89 | 5 | 22 | 228 | 38 | 217 | 4.58e-45 | 155 |
| MS.gene012969.t1 | AT4G17750 | 70.707 | 99 | 29 | 0 | 20 | 118 | 48 | 146 | 4.76e-45 | 162 |
| MS.gene012969.t1 | AT3G22830 | 67.000 | 100 | 33 | 0 | 18 | 117 | 55 | 154 | 5.34e-42 | 152 |
| MS.gene012969.t1 | AT3G02990 | 61.261 | 111 | 39 | 2 | 8 | 115 | 5 | 114 | 2.36e-40 | 149 |
| MS.gene012969.t1 | AT5G03720 | 67.677 | 99 | 32 | 0 | 24 | 122 | 55 | 153 | 2.87e-40 | 147 |
| MS.gene012969.t1 | AT5G03720 | 67.677 | 99 | 32 | 0 | 24 | 122 | 55 | 153 | 2.87e-40 | 147 |
| MS.gene012969.t1 | AT5G16820 | 68.367 | 98 | 30 | 1 | 20 | 117 | 24 | 120 | 1.37e-39 | 147 |
| MS.gene012969.t1 | AT5G16820 | 68.367 | 98 | 30 | 1 | 20 | 117 | 24 | 120 | 1.37e-39 | 147 |
| MS.gene012969.t1 | AT5G43840 | 64.356 | 101 | 36 | 0 | 22 | 122 | 17 | 117 | 2.82e-39 | 141 |
| MS.gene012969.t1 | AT2G26150 | 65.957 | 94 | 32 | 0 | 22 | 115 | 42 | 135 | 1.94e-38 | 140 |
| MS.gene012969.t1 | AT2G26150 | 65.957 | 94 | 32 | 0 | 22 | 115 | 42 | 135 | 1.94e-38 | 140 |
| MS.gene012969.t1 | AT3G24520 | 62.245 | 98 | 37 | 0 | 21 | 118 | 14 | 111 | 6.09e-38 | 139 |
| MS.gene012969.t1 | AT4G13980 | 67.033 | 91 | 30 | 0 | 25 | 115 | 24 | 114 | 1.04e-37 | 141 |
| MS.gene012969.t1 | AT3G51910 | 61.856 | 97 | 37 | 0 | 18 | 114 | 23 | 119 | 2.97e-37 | 135 |
| MS.gene012969.t1 | AT3G63350 | 60.825 | 97 | 38 | 0 | 18 | 114 | 22 | 118 | 1.07e-35 | 132 |
| MS.gene012969.t1 | AT5G54070 | 59.341 | 91 | 37 | 0 | 24 | 114 | 71 | 161 | 5.17e-34 | 129 |
| MS.gene012969.t1 | AT4G18880 | 64.646 | 99 | 34 | 1 | 17 | 115 | 9 | 106 | 1.74e-31 | 123 |
| MS.gene012969.t1 | AT1G67970 | 57.732 | 97 | 40 | 1 | 23 | 118 | 18 | 114 | 6.63e-31 | 121 |
| MS.gene012969.t1 | AT5G45710 | 59.783 | 92 | 37 | 0 | 24 | 115 | 13 | 104 | 2.93e-30 | 119 |
| MS.gene012969.t1 | AT5G45710 | 59.783 | 92 | 37 | 0 | 24 | 115 | 13 | 104 | 2.93e-30 | 119 |
| MS.gene012969.t1 | AT4G18870 | 42.553 | 94 | 51 | 1 | 18 | 108 | 137 | 230 | 1.15e-20 | 91.3 |
| MS.gene012969.t1 | AT4G18870 | 44.186 | 86 | 43 | 3 | 25 | 108 | 14 | 96 | 3.42e-16 | 78.6 |
| MS.gene012969.t1 | AT1G77570 | 38.636 | 88 | 49 | 3 | 25 | 108 | 27 | 113 | 2.25e-12 | 64.7 |
Find 66 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTGTTTCCAAACTATT+TGG | 0.202751 | 3.4:+89680109 | None:intergenic |
| AAACAAGGCTCGTTTGGTTT+TGG | 0.245774 | 3.4:-89680092 | MS.gene012969:CDS |
| GGATTATTAGATCCACATTC+AGG | 0.261808 | 3.4:+89680130 | None:intergenic |
| TGAAGACGAGTCATATGTTT+AGG | 0.266459 | 3.4:+89680304 | None:intergenic |
| CTAACTCTAGTGTTTGAAAA+TGG | 0.272288 | 3.4:+89680712 | None:intergenic |
| AAGCCAATGAACCAGCTTTC+GGG | 0.281382 | 3.4:-89680343 | MS.gene012969:CDS |
| ATCAACAAGTTGGTATGTTT+TGG | 0.282286 | 3.4:+89681212 | None:intergenic |
| TTAACTTCATCATTTGTTAA+TGG | 0.296353 | 3.4:-89680628 | MS.gene012969:CDS |
| TTAACAAATGATGAAGTTAA+TGG | 0.309297 | 3.4:+89680631 | None:intergenic |
| TTGTTGTGTTTGAAGTAGTT+AGG | 0.319993 | 3.4:+89681099 | None:intergenic |
| ATCTAATAATCCAAATAGTT+TGG | 0.322798 | 3.4:-89680119 | MS.gene012969:CDS |
| AGGAGGTCTCTAGCAAATTC+TGG | 0.338598 | 3.4:+89681123 | None:intergenic |
| ATGACTCCACCTTCGTTGTT+TGG | 0.343318 | 3.4:-89681152 | MS.gene012969:CDS |
| TAGTTGTTTGTTGCTGTTGT+TGG | 0.344004 | 3.4:+89680598 | None:intergenic |
| AAAGCCAATGAACCAGCTTT+CGG | 0.347409 | 3.4:-89680344 | MS.gene012969:CDS |
| TGTTGTGTTTGAAGTAGTTA+GGG | 0.361431 | 3.4:+89681100 | None:intergenic |
| CACAGATCACATCGTCTCTT+GGG | 0.368339 | 3.4:-89681181 | MS.gene012969:CDS |
| GGAAACAAACAAGGCTCGTT+TGG | 0.378669 | 3.4:-89680098 | MS.gene012969:CDS |
| GAGCTTCTTGATGTGTTTGT+TGG | 0.386154 | 3.4:+89680241 | None:intergenic |
| GAAGACGAGTCATATGTTTA+GGG | 0.405370 | 3.4:+89680305 | None:intergenic |
| TAAGAGTTACTTGGAGCTAC+TGG | 0.420379 | 3.4:+89680442 | None:intergenic |
| ACATTACCACCACCATTCAT+AGG | 0.425778 | 3.4:+89680379 | None:intergenic |
| TAGCCCGAAAGCTGGTTCAT+TGG | 0.429834 | 3.4:+89680340 | None:intergenic |
| CCACAGATCACATCGTCTCT+TGG | 0.431871 | 3.4:-89681182 | MS.gene012969:CDS |
| TTGTTCATCAGAGTATTCAT+TGG | 0.454805 | 3.4:+89680678 | None:intergenic |
| CCACCACCATTCATAGGAGT+TGG | 0.459985 | 3.4:+89680385 | None:intergenic |
| CTGATGAACAAGTCAACAAC+TGG | 0.462821 | 3.4:-89680666 | MS.gene012969:CDS |
| AGCTCAATAACAATGGTTGA+AGG | 0.469701 | 3.4:-89680223 | MS.gene012969:CDS |
| ACATCACAGCCACAACAAAC+AGG | 0.483395 | 3.4:-89680787 | MS.gene012969:CDS |
| GATGAAGAGTAAGAGTTACT+TGG | 0.490480 | 3.4:+89680433 | None:intergenic |
| TTAGCAAACTCCCATCTGTC+AGG | 0.497806 | 3.4:+89680865 | None:intergenic |
| GAAAATGGAAAGAAACTTGG+TGG | 0.498648 | 3.4:+89680727 | None:intergenic |
| GATTATTAGATCCACATTCA+GGG | 0.505417 | 3.4:+89680131 | None:intergenic |
| GTGGAACATTGTGATGCTGC+TGG | 0.507886 | 3.4:+89680746 | None:intergenic |
| TGTGTTTGAAGTAGTTAGGG+AGG | 0.509850 | 3.4:+89681103 | None:intergenic |
| TCATCAGAGTATTCATTGGA+TGG | 0.511281 | 3.4:+89680682 | None:intergenic |
| GAAAGATTGTACCTGACAGA+TGG | 0.519136 | 3.4:-89680876 | MS.gene012969:CDS |
| GTTTGAAGTAGTTAGGGAGG+AGG | 0.523740 | 3.4:+89681106 | None:intergenic |
| TCAAATCCAACTCCTATGAA+TGG | 0.530340 | 3.4:-89680391 | MS.gene012969:CDS |
| AATTGTAATAGCCCGAAAGC+TGG | 0.534218 | 3.4:+89680332 | None:intergenic |
| TTTGAAAATGGAAAGAAACT+TGG | 0.548152 | 3.4:+89680724 | None:intergenic |
| TGGTGGTGGTAATGTTTCAA+TGG | 0.548976 | 3.4:-89680371 | MS.gene012969:CDS |
| ACTTCATCATTTGTTAATGG+AGG | 0.552014 | 3.4:-89680625 | MS.gene012969:CDS |
| CCACAAAATCAATCCCATCA+TGG | 0.552202 | 3.4:-89680280 | MS.gene012969:CDS |
| AGTTCACATTCATACCATGA+TGG | 0.552494 | 3.4:+89680266 | None:intergenic |
| ATGTTGATTCCTGTTTGTTG+TGG | 0.553850 | 3.4:+89680778 | None:intergenic |
| AAAAGAGTGCACCCTGAATG+TGG | 0.555827 | 3.4:-89680142 | MS.gene012969:CDS |
| ACAAATGATGAAGTTAATGG+TGG | 0.561209 | 3.4:+89680634 | None:intergenic |
| GTTCACATTCATACCATGAT+GGG | 0.572426 | 3.4:+89680267 | None:intergenic |
| CCAACTCCTATGAATGGTGG+TGG | 0.572594 | 3.4:-89680385 | MS.gene012969:CDS |
| AAAGATTGTACCTGACAGAT+GGG | 0.574158 | 3.4:-89680875 | MS.gene012969:CDS |
| GCTCAATAACAATGGTTGAA+GGG | 0.590591 | 3.4:-89680222 | MS.gene012969:CDS |
| GGAGTTGGATTTGAAGCTTG+TGG | 0.599678 | 3.4:+89680400 | None:intergenic |
| AAAACTAACTAACAAGTGGA+AGG | 0.604739 | 3.4:+89680028 | None:intergenic |
| TGGTTGGATCATCAACAAGT+TGG | 0.622309 | 3.4:+89681202 | None:intergenic |
| ACAGATCACATCGTCTCTTG+GGG | 0.629510 | 3.4:-89681180 | MS.gene012969:CDS |
| ATCAAGAAGCTCAATAACAA+TGG | 0.631659 | 3.4:-89680230 | MS.gene012969:CDS |
| GAGACGATGTGATCTGTGGT+TGG | 0.633776 | 3.4:+89681186 | None:intergenic |
| AAATAGTTTGGAAACAAACA+AGG | 0.638741 | 3.4:-89680107 | MS.gene012969:CDS |
| AGGACGCCAAACAACGAAGG+TGG | 0.642419 | 3.4:+89681146 | None:intergenic |
| AATCCAACTCCTATGAATGG+TGG | 0.654630 | 3.4:-89680388 | MS.gene012969:CDS |
| ACTAACTAACAAGTGGAAGG+AGG | 0.655564 | 3.4:+89680031 | None:intergenic |
| CTTCTACTAGACAACTGTGA+AGG | 0.669455 | 3.4:-89681285 | MS.gene012969:CDS |
| AGGTCTCTAGCAAATTCTGG+AGG | 0.693279 | 3.4:+89681126 | None:intergenic |
| TGGAGGACGCCAAACAACGA+AGG | 0.695849 | 3.4:+89681143 | None:intergenic |
| CCAAGAGACGATGTGATCTG+TGG | 0.707530 | 3.4:+89681182 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTCTTTGTTTTTTA+GGG | - | chr3.4:89680423-89680442 | MS.gene012969:CDS | 10.0% |
| !!! | TTATTTTTTCTTTGTTTTTT+AGG | - | chr3.4:89680422-89680441 | MS.gene012969:CDS | 10.0% |
| !! | ATCTAATAATCCAAATAGTT+TGG | - | chr3.4:89681208-89681227 | MS.gene012969:CDS | 20.0% |
| !! | GCTAATGAATATTTCAAAAA+AGG | - | chr3.4:89680480-89680499 | MS.gene012969:CDS | 20.0% |
| !! | TTAACAAATGATGAAGTTAA+TGG | + | chr3.4:89680699-89680718 | None:intergenic | 20.0% |
| !!! | AAAAGATCATGATTTTGATT+TGG | - | chr3.4:89681259-89681278 | MS.gene012969:CDS | 20.0% |
| !!! | AAAGATCATGATTTTGATTT+GGG | - | chr3.4:89681260-89681279 | MS.gene012969:CDS | 20.0% |
| !!! | TTAACTTCATCATTTGTTAA+TGG | - | chr3.4:89680699-89680718 | MS.gene012969:CDS | 20.0% |
| ! | AAATAGTTTGGAAACAAACA+AGG | - | chr3.4:89681220-89681239 | MS.gene012969:CDS | 25.0% |
| ! | TTGTTTGTTTCCAAACTATT+TGG | + | chr3.4:89681221-89681240 | None:intergenic | 25.0% |
| ! | TTTGAAAATGGAAAGAAACT+TGG | + | chr3.4:89680606-89680625 | None:intergenic | 25.0% |
| ACAAATGATGAAGTTAATGG+TGG | + | chr3.4:89680696-89680715 | None:intergenic | 30.0% | |
| ATCAAGAAGCTCAATAACAA+TGG | - | chr3.4:89681097-89681116 | MS.gene012969:CDS | 30.0% | |
| CTAACTCTAGTGTTTGAAAA+TGG | + | chr3.4:89680618-89680637 | None:intergenic | 30.0% | |
| GATTATTAGATCCACATTCA+GGG | + | chr3.4:89681199-89681218 | None:intergenic | 30.0% | |
| ! | ACTTCATCATTTGTTAATGG+AGG | - | chr3.4:89680702-89680721 | MS.gene012969:CDS | 30.0% |
| ! | TGTTGTGTTTGAAGTAGTTA+GGG | + | chr3.4:89680230-89680249 | None:intergenic | 30.0% |
| ! | TTGTTCATCAGAGTATTCAT+TGG | + | chr3.4:89680652-89680671 | None:intergenic | 30.0% |
| ! | TTGTTGTGTTTGAAGTAGTT+AGG | + | chr3.4:89680231-89680250 | None:intergenic | 30.0% |
| !!! | ATCAACAAGTTGGTATGTTT+TGG | + | chr3.4:89680118-89680137 | None:intergenic | 30.0% |
| AAAGATTGTACCTGACAGAT+GGG | - | chr3.4:89680452-89680471 | MS.gene012969:CDS | 35.0% | |
| AGCTCAATAACAATGGTTGA+AGG | - | chr3.4:89681104-89681123 | MS.gene012969:CDS | 35.0% | |
| AGTTCACATTCATACCATGA+TGG | + | chr3.4:89681064-89681083 | None:intergenic | 35.0% | |
| GAAAATGGAAAGAAACTTGG+TGG | + | chr3.4:89680603-89680622 | None:intergenic | 35.0% | |
| GAAGACGAGTCATATGTTTA+GGG | + | chr3.4:89681025-89681044 | None:intergenic | 35.0% | |
| GAAGAGATGATTGCTTACAT+AGG | + | chr3.4:89680283-89680302 | None:intergenic | 35.0% | |
| GATGAAGAGTAAGAGTTACT+TGG | + | chr3.4:89680897-89680916 | None:intergenic | 35.0% | |
| GCTCAATAACAATGGTTGAA+GGG | - | chr3.4:89681105-89681124 | MS.gene012969:CDS | 35.0% | |
| GGATTATTAGATCCACATTC+AGG | + | chr3.4:89681200-89681219 | None:intergenic | 35.0% | |
| GTTCACATTCATACCATGAT+GGG | + | chr3.4:89681063-89681082 | None:intergenic | 35.0% | |
| TCAAATCCAACTCCTATGAA+TGG | - | chr3.4:89680936-89680955 | MS.gene012969:intron | 35.0% | |
| TGAAGACGAGTCATATGTTT+AGG | + | chr3.4:89681026-89681045 | None:intergenic | 35.0% | |
| ! | TAGTTGTTTGTTGCTGTTGT+TGG | + | chr3.4:89680732-89680751 | None:intergenic | 35.0% |
| ! | TCATCAGAGTATTCATTGGA+TGG | + | chr3.4:89680648-89680667 | None:intergenic | 35.0% |
| !! | ATGTTGATTCCTGTTTGTTG+TGG | + | chr3.4:89680552-89680571 | None:intergenic | 35.0% |
| AAAGCCAATGAACCAGCTTT+CGG | - | chr3.4:89680983-89681002 | MS.gene012969:intron | 40.0% | |
| AATCCAACTCCTATGAATGG+TGG | - | chr3.4:89680939-89680958 | MS.gene012969:intron | 40.0% | |
| AATTGTAATAGCCCGAAAGC+TGG | + | chr3.4:89680998-89681017 | None:intergenic | 40.0% | |
| ACATTACCACCACCATTCAT+AGG | + | chr3.4:89680951-89680970 | None:intergenic | 40.0% | |
| CCACAAAATCAATCCCATCA+TGG | - | chr3.4:89681047-89681066 | MS.gene012969:intron | 40.0% | |
| CTGATGAACAAGTCAACAAC+TGG | - | chr3.4:89680661-89680680 | MS.gene012969:CDS | 40.0% | |
| CTTCTACTAGACAACTGTGA+AGG | - | chr3.4:89680042-89680061 | MS.gene012969:CDS | 40.0% | |
| GAAAGATTGTACCTGACAGA+TGG | - | chr3.4:89680451-89680470 | MS.gene012969:CDS | 40.0% | |
| GAGCTTCTTGATGTGTTTGT+TGG | + | chr3.4:89681089-89681108 | None:intergenic | 40.0% | |
| TAAGAGTTACTTGGAGCTAC+TGG | + | chr3.4:89680888-89680907 | None:intergenic | 40.0% | |
| TGGTTGGATCATCAACAAGT+TGG | + | chr3.4:89680128-89680147 | None:intergenic | 40.0% | |
| ! | TGCAGCAAGACTAAGCTTTT+TGG | - | chr3.4:89681143-89681162 | MS.gene012969:CDS | 40.0% |
| ! | TGTGTTTGAAGTAGTTAGGG+AGG | + | chr3.4:89680227-89680246 | None:intergenic | 40.0% |
| !! | AAACAAGGCTCGTTTGGTTT+TGG | - | chr3.4:89681235-89681254 | MS.gene012969:CDS | 40.0% |
| !! | CCATGATGGGATTGATTTTG+TGG | + | chr3.4:89681050-89681069 | None:intergenic | 40.0% |
| !! | TGGTGGTGGTAATGTTTCAA+TGG | - | chr3.4:89680956-89680975 | MS.gene012969:intron | 40.0% |
| !!! | CAAGTTGGTATGTTTTGGTG+AGG | + | chr3.4:89680113-89680132 | None:intergenic | 40.0% |
| !!! | TGGTATGTTTTGGTGAGGAA+TGG | + | chr3.4:89680108-89680127 | None:intergenic | 40.0% |
| AAGCCAATGAACCAGCTTTC+GGG | - | chr3.4:89680984-89681003 | MS.gene012969:intron | 45.0% | |
| ACAGATCACATCGTCTCTTG+GGG | - | chr3.4:89680147-89680166 | MS.gene012969:CDS | 45.0% | |
| ACATCACAGCCACAACAAAC+AGG | - | chr3.4:89680540-89680559 | MS.gene012969:CDS | 45.0% | |
| AGGAGGTCTCTAGCAAATTC+TGG | + | chr3.4:89680207-89680226 | None:intergenic | 45.0% | |
| AGGTCTCTAGCAAATTCTGG+AGG | + | chr3.4:89680204-89680223 | None:intergenic | 45.0% | |
| ATGACTCCACCTTCGTTGTT+TGG | - | chr3.4:89680175-89680194 | MS.gene012969:CDS | 45.0% | |
| CACAGATCACATCGTCTCTT+GGG | - | chr3.4:89680146-89680165 | MS.gene012969:CDS | 45.0% | |
| GGAAACAAACAAGGCTCGTT+TGG | - | chr3.4:89681229-89681248 | MS.gene012969:CDS | 45.0% | |
| TAACGAATCGAAGCGACAAG+AGG | + | chr3.4:89680352-89680371 | None:intergenic | 45.0% | |
| TTAGCAAACTCCCATCTGTC+AGG | + | chr3.4:89680465-89680484 | None:intergenic | 45.0% | |
| ! | AAAAGAGTGCACCCTGAATG+TGG | - | chr3.4:89681185-89681204 | MS.gene012969:CDS | 45.0% |
| ! | GGAGTTGGATTTGAAGCTTG+TGG | + | chr3.4:89680930-89680949 | None:intergenic | 45.0% |
| ! | GTTTGAAGTAGTTAGGGAGG+AGG | + | chr3.4:89680224-89680243 | None:intergenic | 45.0% |
| ! | TTCAGGGTGCACTCTTTTCT+TGG | + | chr3.4:89681183-89681202 | None:intergenic | 45.0% |
| ! | TTTTGGTGAGGAATGGAGCT+GGG | + | chr3.4:89680101-89680120 | None:intergenic | 45.0% |
| CCAACTCCTATGAATGGTGG+TGG | - | chr3.4:89680942-89680961 | MS.gene012969:intron | 50.0% | |
| CCAAGAGACGATGTGATCTG+TGG | + | chr3.4:89680148-89680167 | None:intergenic | 50.0% | |
| CCACAGATCACATCGTCTCT+TGG | - | chr3.4:89680145-89680164 | MS.gene012969:CDS | 50.0% | |
| CCACCACCATTCATAGGAGT+TGG | + | chr3.4:89680945-89680964 | None:intergenic | 50.0% | |
| GAGACGATGTGATCTGTGGT+TGG | + | chr3.4:89680144-89680163 | None:intergenic | 50.0% | |
| GTGGAACATTGTGATGCTGC+TGG | + | chr3.4:89680584-89680603 | None:intergenic | 50.0% | |
| ! | TAGCCCGAAAGCTGGTTCAT+TGG | + | chr3.4:89680990-89681009 | None:intergenic | 50.0% |
| !! | GTTTTGGTGAGGAATGGAGC+TGG | + | chr3.4:89680102-89680121 | None:intergenic | 50.0% |
| AGGACGCCAAACAACGAAGG+TGG | + | chr3.4:89680184-89680203 | None:intergenic | 55.0% | |
| TGGAGGACGCCAAACAACGA+AGG | + | chr3.4:89680187-89680206 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 89680036 | 89681313 | 89680036 | ID=MS.gene012969 |
| chr3.4 | mRNA | 89680036 | 89681313 | 89680036 | ID=MS.gene012969.t1;Parent=MS.gene012969 |
| chr3.4 | exon | 89681065 | 89681313 | 89681065 | ID=MS.gene012969.t1.exon1;Parent=MS.gene012969.t1 |
| chr3.4 | CDS | 89681065 | 89681313 | 89681065 | ID=cds.MS.gene012969.t1;Parent=MS.gene012969.t1 |
| chr3.4 | exon | 89680036 | 89680905 | 89680036 | ID=MS.gene012969.t1.exon2;Parent=MS.gene012969.t1 |
| chr3.4 | CDS | 89680036 | 89680905 | 89680036 | ID=cds.MS.gene012969.t1;Parent=MS.gene012969.t1 |
| Gene Sequence |
| Protein sequence |
