Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012973.t1 | XP_003603049.1 | 78.2 | 381 | 4 | 2 | 1 | 303 | 5 | 384 | 1.00E-149 | 539.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012973.t1 | Q9M7Q4 | 50.7 | 365 | 79 | 15 | 24 | 303 | 21 | 369 | 4.8e-68 | 259.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012973.t1 | G7J6E3 | 78.2 | 381 | 4 | 2 | 1 | 303 | 5 | 384 | 7.3e-150 | 539.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene012973.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012973.t1 | MTR_3g101780 | 95.876 | 194 | 7 | 1 | 1 | 194 | 5 | 197 | 1.61e-117 | 347 |
| MS.gene012973.t1 | MTR_3g101780 | 90.385 | 156 | 13 | 1 | 186 | 339 | 267 | 422 | 8.47e-90 | 276 |
| MS.gene012973.t1 | MTR_4g085910 | 48.907 | 366 | 117 | 12 | 18 | 329 | 12 | 361 | 1.03e-88 | 271 |
| MS.gene012973.t1 | MTR_8g043960 | 38.312 | 308 | 133 | 7 | 24 | 317 | 24 | 288 | 2.53e-52 | 175 |
| MS.gene012973.t1 | MTR_3g010660 | 37.582 | 306 | 153 | 8 | 23 | 317 | 19 | 297 | 1.33e-49 | 169 |
| MS.gene012973.t1 | MTR_7g088090 | 36.164 | 318 | 141 | 10 | 24 | 317 | 16 | 295 | 2.20e-45 | 157 |
| MS.gene012973.t1 | MTR_7g104480 | 37.978 | 366 | 150 | 12 | 30 | 327 | 45 | 401 | 1.31e-44 | 158 |
| MS.gene012973.t1 | MTR_6g026800 | 37.135 | 342 | 166 | 8 | 11 | 330 | 2 | 316 | 1.85e-39 | 142 |
| MS.gene012973.t1 | MTR_2g086390 | 32.209 | 326 | 150 | 10 | 17 | 329 | 1 | 268 | 1.96e-34 | 128 |
| MS.gene012973.t1 | MTR_2g086390 | 32.797 | 311 | 138 | 10 | 17 | 314 | 1 | 253 | 2.17e-34 | 127 |
| MS.gene012973.t1 | MTR_2g086340 | 35.423 | 319 | 150 | 12 | 25 | 329 | 23 | 299 | 1.98e-32 | 123 |
| MS.gene012973.t1 | MTR_5g088230 | 46.721 | 122 | 55 | 3 | 24 | 138 | 17 | 135 | 4.95e-18 | 82.8 |
| MS.gene012973.t1 | MTR_5g088230 | 58.333 | 60 | 25 | 0 | 258 | 317 | 180 | 239 | 1.83e-12 | 67.0 |
| MS.gene012973.t1 | MTR_5g088230 | 46.721 | 122 | 55 | 3 | 24 | 138 | 22 | 140 | 5.34e-18 | 82.8 |
| MS.gene012973.t1 | MTR_5g088230 | 58.333 | 60 | 25 | 0 | 258 | 317 | 185 | 244 | 1.93e-12 | 67.0 |
| MS.gene012973.t1 | MTR_7g015990 | 41.121 | 107 | 46 | 3 | 243 | 337 | 83 | 184 | 5.00e-13 | 67.4 |
| MS.gene012973.t1 | MTR_1g098590 | 50.000 | 74 | 29 | 1 | 266 | 339 | 157 | 222 | 5.44e-13 | 67.8 |
| MS.gene012973.t1 | MTR_4g094390 | 37.500 | 136 | 73 | 4 | 195 | 328 | 62 | 187 | 5.64e-13 | 67.4 |
| MS.gene012973.t1 | MTR_1g098590 | 62.264 | 53 | 20 | 0 | 266 | 318 | 157 | 209 | 8.16e-13 | 67.8 |
| MS.gene012973.t1 | MTR_1g098590 | 62.264 | 53 | 20 | 0 | 266 | 318 | 157 | 209 | 1.81e-12 | 66.6 |
| MS.gene012973.t1 | MTR_5g022780 | 55.556 | 63 | 16 | 1 | 271 | 321 | 166 | 228 | 1.19e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012973.t1 | AT1G45249 | 52.672 | 393 | 93 | 15 | 24 | 334 | 21 | 402 | 3.75e-103 | 309 |
| MS.gene012973.t1 | AT1G45249 | 52.672 | 393 | 93 | 15 | 24 | 334 | 36 | 417 | 5.39e-103 | 309 |
| MS.gene012973.t1 | AT1G45249 | 52.672 | 393 | 93 | 15 | 24 | 334 | 36 | 417 | 5.39e-103 | 309 |
| MS.gene012973.t1 | AT1G45249 | 51.238 | 404 | 93 | 16 | 24 | 334 | 21 | 413 | 7.67e-100 | 301 |
| MS.gene012973.t1 | AT1G45249 | 49.861 | 359 | 79 | 15 | 24 | 297 | 21 | 363 | 1.47e-82 | 255 |
| MS.gene012973.t1 | AT1G45249 | 49.861 | 359 | 79 | 15 | 24 | 297 | 21 | 363 | 1.47e-82 | 255 |
| MS.gene012973.t1 | AT1G45249 | 48.387 | 372 | 85 | 16 | 24 | 304 | 21 | 376 | 5.41e-81 | 252 |
| MS.gene012973.t1 | AT1G45249 | 48.387 | 372 | 85 | 16 | 24 | 304 | 21 | 376 | 5.41e-81 | 252 |
| MS.gene012973.t1 | AT1G45249 | 48.387 | 372 | 85 | 16 | 24 | 304 | 21 | 376 | 5.41e-81 | 252 |
| MS.gene012973.t1 | AT1G45249 | 48.387 | 372 | 85 | 16 | 24 | 304 | 21 | 376 | 5.41e-81 | 252 |
| MS.gene012973.t1 | AT1G49720 | 44.385 | 374 | 138 | 13 | 12 | 328 | 9 | 369 | 9.57e-78 | 244 |
| MS.gene012973.t1 | AT1G49720 | 44.772 | 373 | 136 | 13 | 12 | 327 | 9 | 368 | 1.07e-77 | 243 |
| MS.gene012973.t1 | AT1G49720 | 44.772 | 373 | 136 | 13 | 12 | 327 | 9 | 368 | 1.07e-77 | 243 |
| MS.gene012973.t1 | AT2G41070 | 40.864 | 301 | 104 | 7 | 24 | 323 | 16 | 243 | 7.97e-55 | 180 |
| MS.gene012973.t1 | AT2G41070 | 41.017 | 295 | 100 | 7 | 24 | 317 | 16 | 237 | 4.62e-54 | 178 |
| MS.gene012973.t1 | AT2G41070 | 41.017 | 295 | 100 | 7 | 24 | 317 | 16 | 237 | 4.62e-54 | 178 |
| MS.gene012973.t1 | AT2G41070 | 41.017 | 295 | 100 | 7 | 24 | 317 | 16 | 237 | 4.62e-54 | 178 |
| MS.gene012973.t1 | AT2G41070 | 41.017 | 295 | 100 | 7 | 24 | 317 | 25 | 246 | 5.32e-54 | 178 |
| MS.gene012973.t1 | AT2G36270 | 37.594 | 399 | 148 | 13 | 21 | 331 | 31 | 416 | 2.84e-51 | 176 |
| MS.gene012973.t1 | AT2G36270 | 37.594 | 399 | 148 | 13 | 21 | 331 | 31 | 416 | 2.84e-51 | 176 |
| MS.gene012973.t1 | AT2G36270 | 37.975 | 395 | 144 | 13 | 21 | 327 | 31 | 412 | 6.24e-51 | 175 |
| MS.gene012973.t1 | AT5G42910 | 36.994 | 346 | 158 | 12 | 24 | 327 | 20 | 347 | 2.52e-45 | 159 |
| MS.gene012973.t1 | AT3G19290 | 58.042 | 143 | 38 | 3 | 22 | 142 | 32 | 174 | 9.37e-41 | 147 |
| MS.gene012973.t1 | AT3G19290 | 61.468 | 109 | 30 | 2 | 220 | 328 | 313 | 409 | 4.48e-35 | 132 |
| MS.gene012973.t1 | AT3G19290 | 58.042 | 143 | 38 | 3 | 22 | 142 | 32 | 174 | 1.90e-40 | 147 |
| MS.gene012973.t1 | AT3G19290 | 45.370 | 108 | 45 | 3 | 220 | 327 | 313 | 406 | 1.02e-17 | 84.0 |
| MS.gene012973.t1 | AT3G19290 | 58.042 | 143 | 38 | 3 | 22 | 142 | 32 | 174 | 1.95e-40 | 147 |
| MS.gene012973.t1 | AT3G19290 | 57.724 | 123 | 37 | 3 | 220 | 339 | 313 | 423 | 7.19e-35 | 132 |
| MS.gene012973.t1 | AT3G19290 | 58.042 | 143 | 38 | 3 | 22 | 142 | 32 | 174 | 2.14e-40 | 147 |
| MS.gene012973.t1 | AT3G19290 | 62.963 | 108 | 28 | 2 | 220 | 327 | 313 | 408 | 7.09e-35 | 132 |
| MS.gene012973.t1 | AT3G19290 | 58.042 | 143 | 38 | 3 | 22 | 142 | 32 | 174 | 2.14e-40 | 147 |
| MS.gene012973.t1 | AT3G19290 | 62.963 | 108 | 28 | 2 | 220 | 327 | 313 | 408 | 7.09e-35 | 132 |
| MS.gene012973.t1 | AT4G34000 | 48.309 | 207 | 61 | 6 | 21 | 181 | 24 | 230 | 2.37e-40 | 147 |
| MS.gene012973.t1 | AT4G34000 | 57.692 | 130 | 44 | 5 | 187 | 316 | 300 | 418 | 1.34e-32 | 126 |
| MS.gene012973.t1 | AT4G34000 | 48.309 | 207 | 61 | 6 | 21 | 181 | 24 | 230 | 3.47e-40 | 147 |
| MS.gene012973.t1 | AT4G34000 | 55.414 | 157 | 55 | 6 | 187 | 339 | 300 | 445 | 2.02e-38 | 142 |
| MS.gene012973.t1 | AT4G34000 | 48.309 | 207 | 61 | 6 | 21 | 181 | 24 | 230 | 3.47e-40 | 147 |
| MS.gene012973.t1 | AT4G34000 | 55.414 | 157 | 55 | 6 | 187 | 339 | 300 | 445 | 2.02e-38 | 142 |
| MS.gene012973.t1 | AT4G34000 | 48.309 | 207 | 61 | 6 | 21 | 181 | 24 | 230 | 3.47e-40 | 147 |
| MS.gene012973.t1 | AT4G34000 | 55.414 | 157 | 55 | 6 | 187 | 339 | 300 | 445 | 2.02e-38 | 142 |
| MS.gene012973.t1 | AT3G56850 | 56.557 | 122 | 48 | 2 | 24 | 141 | 16 | 136 | 5.35e-33 | 124 |
| MS.gene012973.t1 | AT3G56850 | 68.852 | 61 | 18 | 1 | 258 | 317 | 212 | 272 | 4.29e-18 | 83.6 |
| MS.gene012973.t1 | AT3G44460 | 40.964 | 166 | 73 | 6 | 23 | 172 | 34 | 190 | 1.39e-23 | 99.8 |
| MS.gene012973.t1 | AT5G44080 | 61.429 | 70 | 24 | 1 | 252 | 318 | 210 | 279 | 1.12e-15 | 77.0 |
| MS.gene012973.t1 | AT4G35900 | 50.000 | 94 | 38 | 2 | 242 | 329 | 189 | 279 | 1.00e-14 | 73.9 |
| MS.gene012973.t1 | AT1G03970 | 63.492 | 63 | 23 | 0 | 256 | 318 | 173 | 235 | 1.26e-14 | 73.6 |
| MS.gene012973.t1 | AT2G17770 | 47.619 | 84 | 42 | 1 | 255 | 336 | 109 | 192 | 5.68e-14 | 70.1 |
Find 98 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGTTCTGGAAAAGATTT+TGG | 0.152121 | 3.4:+89636020 | MS.gene012973:CDS |
| CCAGATATCTAGTGATAAAA+TGG | 0.157392 | 3.4:+89636823 | MS.gene012973:CDS |
| GAATAAAGTTGCTGGCTTTA+TGG | 0.173743 | 3.4:+89636406 | MS.gene012973:CDS |
| TGTTGGAAATAATGGTAATT+TGG | 0.177665 | 3.4:+89636358 | MS.gene012973:CDS |
| AGAATGAATTTCAAGGGTTT+TGG | 0.193549 | 3.4:+89635879 | None:intergenic |
| GGATTATGGTGGTCCTAATT+TGG | 0.219976 | 3.4:+89636211 | MS.gene012973:CDS |
| ATGAATTGTTGAAGAATATT+TGG | 0.232178 | 3.4:+89636057 | MS.gene012973:CDS |
| GTTGGAAATAATGGTAATTT+GGG | 0.258825 | 3.4:+89636359 | MS.gene012973:CDS |
| AATAAAGTTGCTGGCTTTAT+GGG | 0.266563 | 3.4:+89636407 | MS.gene012973:CDS |
| AAGGATATTTCTAAGGATTA+TGG | 0.280302 | 3.4:+89636197 | MS.gene012973:CDS |
| GGGAATGGTAGTAGAATTAA+TGG | 0.305683 | 3.4:+89636428 | MS.gene012973:CDS |
| GTCATTGGTGCAGCCAAATT+AGG | 0.329699 | 3.4:-89636224 | None:intergenic |
| CTTGGTAATGTTGGAAATAA+TGG | 0.336097 | 3.4:+89636350 | MS.gene012973:CDS |
| ATGAACAGTATGGGAGGTTC+TGG | 0.340323 | 3.4:+89636008 | MS.gene012973:CDS |
| TGATGAATTTATGAACAGTA+TGG | 0.356110 | 3.4:+89635998 | MS.gene012973:CDS |
| GGTTTGGAAGGATATTTCTA+AGG | 0.362538 | 3.4:+89636190 | MS.gene012973:CDS |
| AGAAAACAGTTGATGAGGTT+TGG | 0.367163 | 3.4:+89636174 | MS.gene012973:CDS |
| TATCCTCCCACCTCCGTTGC+CGG | 0.367304 | 3.4:-89635922 | None:intergenic |
| AAATAATGGTAATTTGGGTT+TGG | 0.367355 | 3.4:+89636364 | MS.gene012973:CDS |
| AATTTACCTGCTTGCGAGCC+CGG | 0.373655 | 3.4:-89636997 | None:intergenic |
| GAGAAGAATGATCAAGAATA+GGG | 0.378154 | 3.4:+89636958 | MS.gene012973:CDS |
| AGGGATTGGTATGGTTGGTT+TGG | 0.387370 | 3.4:+89636760 | MS.gene012973:CDS |
| ACAGGCTTATACCATGGAAT+TGG | 0.387535 | 3.4:+89637815 | MS.gene012973:intron |
| ACTCAGAGACAACCAACTTT+GGG | 0.389084 | 3.4:+89636245 | MS.gene012973:CDS |
| GCCTCCGCCGGCAACGGAGG+TGG | 0.391920 | 3.4:+89635915 | MS.gene012973:CDS |
| GACTCAGAGACAACCAACTT+TGG | 0.399256 | 3.4:+89636244 | MS.gene012973:CDS |
| CCCACCTCCGTTGCCGGCGG+AGG | 0.402096 | 3.4:-89635916 | None:intergenic |
| AGAGAAGAATGATCAAGAAT+AGG | 0.407993 | 3.4:+89636957 | MS.gene012973:CDS |
| GGAATGAGAGGTGGAATTGT+AGG | 0.418501 | 3.4:+89636692 | MS.gene012973:intron |
| TACTGATTCTTTAAGGGCAC+TGG | 0.434920 | 3.4:-89638655 | None:intergenic |
| GTAGGGCTTTCTCCTGATCA+AGG | 0.442348 | 3.4:+89636710 | MS.gene012973:CDS |
| TTACCATTCAATCCTTGATC+AGG | 0.443983 | 3.4:-89636722 | None:intergenic |
| GGTATGGTTGGTTTGGCACC+AGG | 0.447725 | 3.4:+89636767 | MS.gene012973:CDS |
| CAGCAGATGAATAAAGTTGC+TGG | 0.448703 | 3.4:+89636398 | MS.gene012973:CDS |
| TCTCCTGATCAAGGATTGAA+TGG | 0.449484 | 3.4:+89636719 | MS.gene012973:CDS |
| CTTGTGCAAGGTGGAGGGAT+TGG | 0.459403 | 3.4:+89636746 | MS.gene012973:CDS |
| TTTCTTGATCTTGGTAATGT+TGG | 0.467333 | 3.4:+89636341 | MS.gene012973:CDS |
| GGTGGAGGGATTGGTATGGT+TGG | 0.467962 | 3.4:+89636755 | MS.gene012973:CDS |
| GTTGGTTGTCTCTGAGTCAT+TGG | 0.468259 | 3.4:-89636239 | None:intergenic |
| CAGATATCTAGTGATAAAAT+GGG | 0.478085 | 3.4:+89636824 | MS.gene012973:CDS |
| CCTCCGCCGGCAACGGAGGT+GGG | 0.479264 | 3.4:+89635916 | MS.gene012973:CDS |
| AATACTGCAGGAAGAAATCA+TGG | 0.484256 | 3.4:+89638002 | MS.gene012973:intron |
| GGTAATCTTGTGCAAGGTGG+AGG | 0.487894 | 3.4:+89636740 | MS.gene012973:CDS |
| TTCATTACAGGCTTATACCA+TGG | 0.487947 | 3.4:+89637809 | MS.gene012973:intron |
| TAGATCCCGGGCTCGCAAGC+AGG | 0.489774 | 3.4:+89636991 | MS.gene012973:CDS |
| ATTTACCTGCTTGCGAGCCC+GGG | 0.490069 | 3.4:-89636996 | None:intergenic |
| GGGAGTCAGCTGCTAGATCC+CGG | 0.491880 | 3.4:+89636978 | MS.gene012973:CDS |
| AACTTCTGCTTCCAATTCCA+TGG | 0.494273 | 3.4:-89637826 | None:intergenic |
| GCACCAGGCGCTGTTCAAAT+CGG | 0.497361 | 3.4:+89636782 | MS.gene012973:CDS |
| AACAGTTGATGAGGTTTGGA+AGG | 0.501243 | 3.4:+89636178 | MS.gene012973:CDS |
| GCAAGGTGGAGGGATTGGTA+TGG | 0.513932 | 3.4:+89636751 | MS.gene012973:CDS |
| CAAGGAGCCTCCGCCGGCAA+CGG | 0.518328 | 3.4:+89635909 | MS.gene012973:CDS |
| GCTGAAGAGGTTCAAACAAT+GGG | 0.523150 | 3.4:+89636083 | MS.gene012973:CDS |
| GATGAATTTATGAACAGTAT+GGG | 0.524106 | 3.4:+89635999 | MS.gene012973:CDS |
| TCACTAGATATCTGGTTAGC+CGG | 0.531140 | 3.4:-89636815 | None:intergenic |
| GCACCGATTTGAACAGCGCC+TGG | 0.532017 | 3.4:-89636785 | None:intergenic |
| GGAGCCTCCGCCGGCAACGG+AGG | 0.533095 | 3.4:+89635912 | MS.gene012973:CDS |
| TTAATGGTGGTATGCGAGGG+AGG | 0.536824 | 3.4:+89636894 | MS.gene012973:CDS |
| CGGAGGTGGGAGGATAGCGG+CGG | 0.537694 | 3.4:+89635929 | MS.gene012973:CDS |
| GTTGCTGGCTTTATGGGGAA+TGG | 0.543011 | 3.4:+89636413 | MS.gene012973:CDS |
| AGGTAATGGAGCTGTGGAGA+AGG | 0.545271 | 3.4:+89636919 | MS.gene012973:CDS |
| AATGATCAAGGAGCCTCCGC+CGG | 0.545660 | 3.4:+89635903 | MS.gene012973:CDS |
| TGATACTTCTTCTGTGTCGC+CGG | 0.548990 | 3.4:+89636859 | MS.gene012973:CDS |
| GGTGGTATGCGAGGGAGGAA+AGG | 0.549516 | 3.4:+89636899 | MS.gene012973:CDS |
| TCAAATCGGTGCTGTCTCAC+CGG | 0.551923 | 3.4:+89636796 | MS.gene012973:CDS |
| GAGGAAAGGTAATGGAGCTG+TGG | 0.555405 | 3.4:+89636913 | MS.gene012973:CDS |
| GAAGATGCTAAGCCAAATGA+TGG | 0.557262 | 3.4:+89636314 | MS.gene012973:CDS |
| TGCTGAAGAGGTTCAAACAA+TGG | 0.558140 | 3.4:+89636082 | MS.gene012973:CDS |
| ATGCGAGGGAGGAAAGGTAA+TGG | 0.558382 | 3.4:+89636905 | MS.gene012973:CDS |
| GAATGAGAGGTGGAATTGTA+GGG | 0.560499 | 3.4:+89636693 | MS.gene012973:CDS |
| TAGTCAGAAAACAGTTGATG+AGG | 0.564073 | 3.4:+89636169 | MS.gene012973:CDS |
| TTAGTAAGAAATATGTTCAA+AGG | 0.565792 | 3.4:+89638623 | MS.gene012973:CDS |
| GGAGGTGGGAGGATAGCGGC+GGG | 0.565977 | 3.4:+89635930 | MS.gene012973:CDS |
| GAATATTTGGAGTGCTGAAG+AGG | 0.566232 | 3.4:+89636070 | MS.gene012973:CDS |
| GATAAAATGGGAAAGAGTAA+CGG | 0.571198 | 3.4:+89636836 | MS.gene012973:CDS |
| CTGTGGAGAAGGTAATTGAG+AGG | 0.572191 | 3.4:+89636930 | MS.gene012973:CDS |
| TCTAATAATCAAGGAATGAG+AGG | 0.577040 | 3.4:+89636680 | MS.gene012973:intron |
| TCCGCTGACGAGGCAACCGT+CGG | 0.578535 | 3.4:+89635959 | MS.gene012973:CDS |
| CTCAGAGACAACCAACTTTG+GGG | 0.586904 | 3.4:+89636246 | MS.gene012973:CDS |
| GGAGTCAGCTGCTAGATCCC+GGG | 0.588687 | 3.4:+89636979 | MS.gene012973:CDS |
| CAACGGAGGTGGGAGGATAG+CGG | 0.595196 | 3.4:+89635926 | MS.gene012973:CDS |
| ATAAAGTTGCTGGCTTTATG+GGG | 0.596851 | 3.4:+89636408 | MS.gene012973:CDS |
| AGTAATCATTTGCAAAGACA+AGG | 0.608196 | 3.4:+89636122 | MS.gene012973:CDS |
| GTAATCTTGTGCAAGGTGGA+GGG | 0.620240 | 3.4:+89636741 | MS.gene012973:CDS |
| AATAATCAAGGAATGAGAGG+TGG | 0.622320 | 3.4:+89636683 | MS.gene012973:intron |
| ACCGTCGGTGTATTCGCTGA+CGG | 0.623631 | 3.4:+89635974 | MS.gene012973:CDS |
| GATATTTCTAAGGATTATGG+TGG | 0.625463 | 3.4:+89636200 | MS.gene012973:CDS |
| CCTCCCACCTCCGTTGCCGG+CGG | 0.627327 | 3.4:-89635919 | None:intergenic |
| CCGCCGGCAACGGAGGTGGG+AGG | 0.631875 | 3.4:+89635919 | MS.gene012973:CDS |
| GAGGTGGGAGGATAGCGGCG+GGG | 0.636472 | 3.4:+89635931 | MS.gene012973:CDS |
| ACCGACGGTTGCCTCGTCAG+CGG | 0.647274 | 3.4:-89635960 | None:intergenic |
| TGGAGAAGGTAATTGAGAGG+AGG | 0.650346 | 3.4:+89636933 | MS.gene012973:CDS |
| GAATTTATGAACAGTATGGG+AGG | 0.655045 | 3.4:+89636002 | MS.gene012973:CDS |
| TTGAATGGTAATCTTGTGCA+AGG | 0.684719 | 3.4:+89636734 | MS.gene012973:CDS |
| TCAGAGACAACCAACTTTGG+GGG | 0.686998 | 3.4:+89636247 | MS.gene012973:CDS |
| AATGGTAATCTTGTGCAAGG+TGG | 0.698472 | 3.4:+89636737 | MS.gene012973:CDS |
| GAAGAGGTTCAAACAATGGG+TGG | 0.702046 | 3.4:+89636086 | MS.gene012973:CDS |
| ACCGTCAGCGAATACACCGA+CGG | 0.702106 | 3.4:-89635975 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTTTCACAATAAAG+AGG | - | chr3.4:89637346-89637365 | None:intergenic | 15.0% |
| !!! | TTTTTATTTTCATTCATTAC+AGG | + | chr3.4:89637797-89637816 | MS.gene012973:intron | 15.0% |
| !! | ATAGATAGTTCACTATTAAT+AGG | + | chr3.4:89637364-89637383 | MS.gene012973:intron | 20.0% |
| !! | ATGAATTGTTGAAGAATATT+TGG | + | chr3.4:89636057-89636076 | MS.gene012973:CDS | 20.0% |
| !! | TAGATAGTTCACTATTAATA+GGG | + | chr3.4:89637365-89637384 | MS.gene012973:intron | 20.0% |
| !! | TTAGTAAGAAATATGTTCAA+AGG | + | chr3.4:89638623-89638642 | MS.gene012973:CDS | 20.0% |
| ! | AATTTGCCTTTGAATGTTAA+TGG | + | chr3.4:89636488-89636507 | MS.gene012973:intron | 25.0% |
| ! | ATACCACCATTAAAAACATA+AGG | - | chr3.4:89636887-89636906 | None:intergenic | 25.0% |
| ! | ATTCCTTGATTATTAGACAA+AGG | - | chr3.4:89636677-89636696 | None:intergenic | 25.0% |
| ! | ATTTGCCTTTGAATGTTAAT+GGG | + | chr3.4:89636489-89636508 | MS.gene012973:intron | 25.0% |
| ! | CAAATTAGCATGTTATATGA+AGG | - | chr3.4:89638219-89638238 | None:intergenic | 25.0% |
| ! | CAGATATCTAGTGATAAAAT+GGG | + | chr3.4:89636824-89636843 | MS.gene012973:CDS | 25.0% |
| ! | CATGTTATGATTATAGTACA+AGG | + | chr3.4:89637452-89637471 | MS.gene012973:intron | 25.0% |
| ! | GATGAATTTATGAACAGTAT+GGG | + | chr3.4:89635999-89636018 | MS.gene012973:CDS | 25.0% |
| ! | GTTGGAAATAATGGTAATTT+GGG | + | chr3.4:89636359-89636378 | MS.gene012973:CDS | 25.0% |
| ! | TGATGAATTTATGAACAGTA+TGG | + | chr3.4:89635998-89636017 | MS.gene012973:CDS | 25.0% |
| ! | TGTTGGAAATAATGGTAATT+TGG | + | chr3.4:89636358-89636377 | MS.gene012973:CDS | 25.0% |
| ! | TTCATTTCTACATGAATTTG+TGG | + | chr3.4:89637932-89637951 | MS.gene012973:intron | 25.0% |
| ! | TTTGAACTGATACCTAATTT+AGG | + | chr3.4:89638396-89638415 | MS.gene012973:intron | 25.0% |
| !! | AAATAATGGTAATTTGGGTT+TGG | + | chr3.4:89636364-89636383 | MS.gene012973:CDS | 25.0% |
| !! | AACCAAGAACAAATGATTTT+CGG | - | chr3.4:89638070-89638089 | None:intergenic | 25.0% |
| !! | AAGGATATTTCTAAGGATTA+TGG | + | chr3.4:89636197-89636216 | MS.gene012973:CDS | 25.0% |
| !! | ATGAAAGGTGAAAGATTTTT+GGG | + | chr3.4:89637567-89637586 | MS.gene012973:intron | 25.0% |
| !! | CCACAAAAGCATATATTAAT+GGG | + | chr3.4:89637686-89637705 | MS.gene012973:intron | 25.0% |
| !! | TCCACAAAAGCATATATTAA+TGG | + | chr3.4:89637685-89637704 | MS.gene012973:intron | 25.0% |
| !!! | AAGCATATATTAATGGGTTT+TGG | + | chr3.4:89637692-89637711 | MS.gene012973:intron | 25.0% |
| !!! | ATATATTAATGGGTTTTGGT+GGG | + | chr3.4:89637696-89637715 | MS.gene012973:intron | 25.0% |
| AAAATCTTTCACCTTTCATC+AGG | - | chr3.4:89637566-89637585 | None:intergenic | 30.0% | |
| AATTAGGTATCAGTTCAAAC+AGG | - | chr3.4:89638395-89638414 | None:intergenic | 30.0% | |
| ACAAGACAGAAGATAAAAAG+TGG | - | chr3.4:89638558-89638577 | None:intergenic | 30.0% | |
| ACATTCAAAGGCAAATTAGT+AGG | - | chr3.4:89636485-89636504 | None:intergenic | 30.0% | |
| AGAGAAGAATGATCAAGAAT+AGG | + | chr3.4:89636957-89636976 | MS.gene012973:CDS | 30.0% | |
| AGAGGAGTAGACATATATAA+GGG | - | chr3.4:89637159-89637178 | None:intergenic | 30.0% | |
| AGTAATCATTTGCAAAGACA+AGG | + | chr3.4:89636122-89636141 | MS.gene012973:CDS | 30.0% | |
| AGTTCACTATTAATAGGGTT+TGG | + | chr3.4:89637370-89637389 | MS.gene012973:intron | 30.0% | |
| ATGACAATTTGTAAGGATTC+AGG | + | chr3.4:89637601-89637620 | MS.gene012973:intron | 30.0% | |
| ATGCCTTTGTCTAATAATCA+AGG | + | chr3.4:89636671-89636690 | MS.gene012973:intron | 30.0% | |
| ATGGTTGTAGAATGATTTGA+TGG | + | chr3.4:89638587-89638606 | MS.gene012973:intron | 30.0% | |
| ATTTAAGTGACTAACAAGCA+CGG | - | chr3.4:89637220-89637239 | None:intergenic | 30.0% | |
| CCAGATATCTAGTGATAAAA+TGG | + | chr3.4:89636823-89636842 | MS.gene012973:CDS | 30.0% | |
| CCATTAAAAACATAAGGAAC+CGG | - | chr3.4:89636881-89636900 | None:intergenic | 30.0% | |
| CTAATCCCATTAACATTCAA+AGG | - | chr3.4:89636497-89636516 | None:intergenic | 30.0% | |
| GAGAAGAATGATCAAGAATA+GGG | + | chr3.4:89636958-89636977 | MS.gene012973:CDS | 30.0% | |
| GATAAAATGGGAAAGAGTAA+CGG | + | chr3.4:89636836-89636855 | MS.gene012973:CDS | 30.0% | |
| GTCATTGTGAAGATAACATT+TGG | + | chr3.4:89638276-89638295 | MS.gene012973:intron | 30.0% | |
| TAAAAAGTGGCATAAGACAA+AGG | - | chr3.4:89638545-89638564 | None:intergenic | 30.0% | |
| TACAGTCATGACAATTTGTA+AGG | + | chr3.4:89637594-89637613 | MS.gene012973:intron | 30.0% | |
| TATATAAGGGAACAGATACT+AGG | - | chr3.4:89637146-89637165 | None:intergenic | 30.0% | |
| TCAAGAAAAACACCATCATT+TGG | - | chr3.4:89636329-89636348 | None:intergenic | 30.0% | |
| TCAAGAGTAGAACCTAAATT+AGG | - | chr3.4:89638411-89638430 | None:intergenic | 30.0% | |
| TCAGAAAAAGCAGGTATTTA+TGG | + | chr3.4:89637878-89637897 | MS.gene012973:intron | 30.0% | |
| TCTAATAATCAAGGAATGAG+AGG | + | chr3.4:89636680-89636699 | MS.gene012973:intron | 30.0% | |
| TGTCAGGTTCAAAATAAGAA+CGG | + | chr3.4:89638335-89638354 | MS.gene012973:intron | 30.0% | |
| TGTTCAAATGAACAATTACG+TGG | + | chr3.4:89637087-89637106 | MS.gene012973:intron | 30.0% | |
| TTTACCTTCTAGTAACAGAA+AGG | + | chr3.4:89637309-89637328 | MS.gene012973:intron | 30.0% | |
| ! | AAATCACGAACACATTCTTT+TGG | - | chr3.4:89637428-89637447 | None:intergenic | 30.0% |
| ! | CCATTTTATCACTAGATATC+TGG | - | chr3.4:89636826-89636845 | None:intergenic | 30.0% |
| ! | CCCATTAATATATGCTTTTG+TGG | - | chr3.4:89637689-89637708 | None:intergenic | 30.0% |
| ! | GATATTTCTAAGGATTATGG+TGG | + | chr3.4:89636200-89636219 | MS.gene012973:CDS | 30.0% |
| ! | GATGAAAGGTGAAAGATTTT+TGG | + | chr3.4:89637566-89637585 | MS.gene012973:intron | 30.0% |
| !! | AATAAAGTTGCTGGCTTTAT+GGG | + | chr3.4:89636407-89636426 | MS.gene012973:CDS | 30.0% |
| !! | CTTGGTAATGTTGGAAATAA+TGG | + | chr3.4:89636350-89636369 | MS.gene012973:CDS | 30.0% |
| !! | GTTCCTTATGTTTTTAATGG+TGG | + | chr3.4:89636881-89636900 | MS.gene012973:CDS | 30.0% |
| !! | TAAGGATTCAGGTTTTAACA+AGG | + | chr3.4:89637612-89637631 | MS.gene012973:intron | 30.0% |
| !! | TTCAGGTTTTAACAAGGTAA+TGG | + | chr3.4:89637618-89637637 | MS.gene012973:intron | 30.0% |
| !! | TTTCTTGATCTTGGTAATGT+TGG | + | chr3.4:89636341-89636360 | MS.gene012973:CDS | 30.0% |
| !!! | CATATATTAATGGGTTTTGG+TGG | + | chr3.4:89637695-89637714 | MS.gene012973:intron | 30.0% |
| AATAATCAAGGAATGAGAGG+TGG | + | chr3.4:89636683-89636702 | MS.gene012973:intron | 35.0% | |
| AATACTGCAGGAAGAAATCA+TGG | + | chr3.4:89638002-89638021 | MS.gene012973:intron | 35.0% | |
| ACCATTATTCTGAATACTGC+AGG | + | chr3.4:89637990-89638009 | MS.gene012973:intron | 35.0% | |
| ACTAGAGACTTGTACAGTTA+AGG | - | chr3.4:89638124-89638143 | None:intergenic | 35.0% | |
| AGGTTCAAAATAAGAACGGT+CGG | + | chr3.4:89638339-89638358 | MS.gene012973:intron | 35.0% | |
| CAAATATTTCCAAAGCAACC+TGG | + | chr3.4:89636629-89636648 | MS.gene012973:intron | 35.0% | |
| CTACATGAATTTGTGGCTTA+AGG | + | chr3.4:89637939-89637958 | MS.gene012973:intron | 35.0% | |
| GAATTTATGAACAGTATGGG+AGG | + | chr3.4:89636002-89636021 | MS.gene012973:CDS | 35.0% | |
| GAGAGGAGTAGACATATATA+AGG | - | chr3.4:89637160-89637179 | None:intergenic | 35.0% | |
| GGATAAAAGCAGAATGTCAA+TGG | - | chr3.4:89637490-89637509 | None:intergenic | 35.0% | |
| GGGAATGGTAGTAGAATTAA+TGG | + | chr3.4:89636428-89636447 | MS.gene012973:CDS | 35.0% | |
| GTCAGAAGTTATGCTAATCA+AGG | + | chr3.4:89638298-89638317 | MS.gene012973:intron | 35.0% | |
| TAGACTCTTTGTATATCGAG+AGG | - | chr3.4:89637177-89637196 | None:intergenic | 35.0% | |
| TCCTGCAGTATTCAGAATAA+TGG | - | chr3.4:89637994-89638013 | None:intergenic | 35.0% | |
| TCGGTTAAGAAGTCATGAAT+AGG | + | chr3.4:89638191-89638210 | MS.gene012973:intron | 35.0% | |
| TCTGTCTTGTATTCACTTGA+TGG | + | chr3.4:89638568-89638587 | MS.gene012973:intron | 35.0% | |
| TGAAGAACTTCAGAAAAAGC+AGG | + | chr3.4:89637869-89637888 | MS.gene012973:CDS | 35.0% | |
| TTACCATTCAATCCTTGATC+AGG | - | chr3.4:89636725-89636744 | None:intergenic | 35.0% | |
| TTCATTACAGGCTTATACCA+TGG | + | chr3.4:89637809-89637828 | MS.gene012973:intron | 35.0% | |
| TTGAATGGTAATCTTGTGCA+AGG | + | chr3.4:89636734-89636753 | MS.gene012973:CDS | 35.0% | |
| ! | AACCGATTAGTCACAAAACA+GGG | - | chr3.4:89638177-89638196 | None:intergenic | 35.0% |
| ! | GATGGTGTTTTTCTTGATCT+TGG | + | chr3.4:89636332-89636351 | MS.gene012973:CDS | 35.0% |
| ! | GGTTTGGAAGGATATTTCTA+AGG | + | chr3.4:89636190-89636209 | MS.gene012973:CDS | 35.0% |
| ! | TAACCGATTAGTCACAAAAC+AGG | - | chr3.4:89638178-89638197 | None:intergenic | 35.0% |
| ! | TAGTCAGAAAACAGTTGATG+AGG | + | chr3.4:89636169-89636188 | MS.gene012973:CDS | 35.0% |
| ! | TTTTTAATGGTGGTATGCGA+GGG | + | chr3.4:89636891-89636910 | MS.gene012973:CDS | 35.0% |
| !! | AGAAAACAGTTGATGAGGTT+TGG | + | chr3.4:89636174-89636193 | MS.gene012973:CDS | 35.0% |
| !! | AGATTTTGGGTCAATGAACA+TGG | + | chr3.4:89636034-89636053 | MS.gene012973:CDS | 35.0% |
| !! | ATAAAGTTGCTGGCTTTATG+GGG | + | chr3.4:89636408-89636427 | MS.gene012973:CDS | 35.0% |
| !! | CCGGTTCCTTATGTTTTTAA+TGG | + | chr3.4:89636878-89636897 | MS.gene012973:CDS | 35.0% |
| !! | GAATAAAGTTGCTGGCTTTA+TGG | + | chr3.4:89636406-89636425 | MS.gene012973:CDS | 35.0% |
| !! | GATGACTTTGGAAGAGTTTT+TGG | + | chr3.4:89636271-89636290 | MS.gene012973:CDS | 35.0% |
| !!! | GAGGTTCTGGAAAAGATTTT+GGG | + | chr3.4:89636021-89636040 | MS.gene012973:CDS | 35.0% |
| !!! | TAATTTGGGTTTGGCTTTTC+AGG | + | chr3.4:89636373-89636392 | MS.gene012973:CDS | 35.0% |
| AACTTCTGCTTCCAATTCCA+TGG | - | chr3.4:89637829-89637848 | None:intergenic | 40.0% | |
| AATGGTAATCTTGTGCAAGG+TGG | + | chr3.4:89636737-89636756 | MS.gene012973:CDS | 40.0% | |
| ACAGGCTTATACCATGGAAT+TGG | + | chr3.4:89637815-89637834 | MS.gene012973:intron | 40.0% | |
| ACTCAGAGACAACCAACTTT+GGG | + | chr3.4:89636245-89636264 | MS.gene012973:CDS | 40.0% | |
| CAAAATAAGAACGGTCGGTT+TGG | + | chr3.4:89638344-89638363 | MS.gene012973:intron | 40.0% | |
| CAGCAGATGAATAAAGTTGC+TGG | + | chr3.4:89636398-89636417 | MS.gene012973:CDS | 40.0% | |
| CGCCGAAAATCATTTGTTCT+TGG | + | chr3.4:89638065-89638084 | MS.gene012973:intron | 40.0% | |
| CTCACCTTTCTGTTACTAGA+AGG | - | chr3.4:89637316-89637335 | None:intergenic | 40.0% | |
| CTGCGTCTGTATGTGAAATA+CGG | - | chr3.4:89637909-89637928 | None:intergenic | 40.0% | |
| GAAGATGCTAAGCCAAATGA+TGG | + | chr3.4:89636314-89636333 | MS.gene012973:CDS | 40.0% | |
| GAATGAGAGGTGGAATTGTA+GGG | + | chr3.4:89636693-89636712 | MS.gene012973:CDS | 40.0% | |
| GCTGAAGAGGTTCAAACAAT+GGG | + | chr3.4:89636083-89636102 | MS.gene012973:CDS | 40.0% | |
| GGATTATGGTGGTCCTAATT+TGG | + | chr3.4:89636211-89636230 | MS.gene012973:CDS | 40.0% | |
| GGTAATGATGATCCACTTGT+TGG | + | chr3.4:89636449-89636468 | MS.gene012973:intron | 40.0% | |
| TAACTGCATTCTCCATGTAC+TGG | + | chr3.4:89637243-89637262 | MS.gene012973:intron | 40.0% | |
| TAGTTCAAACCAGGTTGCTT+TGG | - | chr3.4:89636641-89636660 | None:intergenic | 40.0% | |
| TCACTAGATATCTGGTTAGC+CGG | - | chr3.4:89636818-89636837 | None:intergenic | 40.0% | |
| TCTCCTGATCAAGGATTGAA+TGG | + | chr3.4:89636719-89636738 | MS.gene012973:CDS | 40.0% | |
| TGAGTTGCATAGTTCAAACC+AGG | - | chr3.4:89636650-89636669 | None:intergenic | 40.0% | |
| TGCTGAAGAGGTTCAAACAA+TGG | + | chr3.4:89636082-89636101 | MS.gene012973:CDS | 40.0% | |
| ! | GTTTTCTGACTAAGAGTTCG+CGG | - | chr3.4:89636161-89636180 | None:intergenic | 40.0% |
| ! | GTTTTTAATGGTGGTATGCG+AGG | + | chr3.4:89636890-89636909 | MS.gene012973:CDS | 40.0% |
| ! | TGCCCTGTTTTGTGACTAAT+CGG | + | chr3.4:89638172-89638191 | MS.gene012973:intron | 40.0% |
| ! | TTTTGGTGGGAACATGACAT+GGG | + | chr3.4:89637709-89637728 | MS.gene012973:intron | 40.0% |
| !! | AACAGTTGATGAGGTTTGGA+AGG | + | chr3.4:89636178-89636197 | MS.gene012973:CDS | 40.0% |
| !! | GAATATTTGGAGTGCTGAAG+AGG | + | chr3.4:89636070-89636089 | MS.gene012973:CDS | 40.0% |
| !!! | GAAGAGTTTTTGGTTAGAGC+TGG | + | chr3.4:89636281-89636300 | MS.gene012973:CDS | 40.0% |
| !!! | GGAGGTTCTGGAAAAGATTT+TGG | + | chr3.4:89636020-89636039 | MS.gene012973:CDS | 40.0% |
| AAAGTCATCTCCCCCAAAGT+TGG | - | chr3.4:89636260-89636279 | None:intergenic | 45.0% | |
| AGCAATAGAGGGTTCGACAA+AGG | + | chr3.4:89638254-89638273 | MS.gene012973:intron | 45.0% | |
| ATGAACAGTATGGGAGGTTC+TGG | + | chr3.4:89636008-89636027 | MS.gene012973:CDS | 45.0% | |
| CATACACAGCATGTTCACAG+AGG | - | chr3.4:89637511-89637530 | None:intergenic | 45.0% | |
| CGTATTTCACATACAGACGC+AGG | + | chr3.4:89637907-89637926 | MS.gene012973:intron | 45.0% | |
| CTCAGAGACAACCAACTTTG+GGG | + | chr3.4:89636246-89636265 | MS.gene012973:CDS | 45.0% | |
| CTCGCAGAATATACGTCGAT+CGG | - | chr3.4:89638491-89638510 | None:intergenic | 45.0% | |
| CTGTGGAGAAGGTAATTGAG+AGG | + | chr3.4:89636930-89636949 | MS.gene012973:CDS | 45.0% | |
| GAAGAGGTTCAAACAATGGG+TGG | + | chr3.4:89636086-89636105 | MS.gene012973:CDS | 45.0% | |
| GACTCAGAGACAACCAACTT+TGG | + | chr3.4:89636244-89636263 | MS.gene012973:CDS | 45.0% | |
| GATGCAGAATTCACAGTCTC+AGG | + | chr3.4:89636538-89636557 | MS.gene012973:intron | 45.0% | |
| GGAATGAGAGGTGGAATTGT+AGG | + | chr3.4:89636692-89636711 | MS.gene012973:intron | 45.0% | |
| GTAATCTTGTGCAAGGTGGA+GGG | + | chr3.4:89636741-89636760 | MS.gene012973:CDS | 45.0% | |
| GTCATTGGTGCAGCCAAATT+AGG | - | chr3.4:89636227-89636246 | None:intergenic | 45.0% | |
| GTTGGTTGTCTCTGAGTCAT+TGG | - | chr3.4:89636242-89636261 | None:intergenic | 45.0% | |
| TAGCGATCTGACCTGATGAA+AGG | + | chr3.4:89637552-89637571 | MS.gene012973:intron | 45.0% | |
| TAGTCACAAAACAGGGCACA+AGG | - | chr3.4:89638170-89638189 | None:intergenic | 45.0% | |
| TCAGAGACAACCAACTTTGG+GGG | + | chr3.4:89636247-89636266 | MS.gene012973:CDS | 45.0% | |
| TGATACTTCTTCTGTGTCGC+CGG | + | chr3.4:89636859-89636878 | MS.gene012973:CDS | 45.0% | |
| TGGAGAAGGTAATTGAGAGG+AGG | + | chr3.4:89636933-89636952 | MS.gene012973:CDS | 45.0% | |
| ! | AACTTTGGGGGAGATGACTT+TGG | + | chr3.4:89636259-89636278 | MS.gene012973:CDS | 45.0% |
| ! | AAGGTAATGGTGCAACTGAC+TGG | + | chr3.4:89637631-89637650 | MS.gene012973:intron | 45.0% |
| ! | AGGGATTGGTATGGTTGGTT+TGG | + | chr3.4:89636760-89636779 | MS.gene012973:CDS | 45.0% |
| ! | AGGTAATGGTGCAACTGACT+GGG | + | chr3.4:89637632-89637651 | MS.gene012973:intron | 45.0% |
| ! | GGACTTTGAAGACCAACAAG+TGG | - | chr3.4:89636464-89636483 | None:intergenic | 45.0% |
| !! | GTTTTGGTGGGAACATGACA+TGG | + | chr3.4:89637708-89637727 | MS.gene012973:intron | 45.0% |
| !!! | AAATTTATTTTAATATTTGA+TGG | - | chr3.4:89638444-89638463 | None:intergenic | 5.0% |
| AATTTACCTGCTTGCGAGCC+CGG | - | chr3.4:89637000-89637019 | None:intergenic | 50.0% | |
| AGTCAGTCAGTGCAGACTGT+AGG | + | chr3.4:89637285-89637304 | MS.gene012973:intron | 50.0% | |
| ATGCGAGGGAGGAAAGGTAA+TGG | + | chr3.4:89636905-89636924 | MS.gene012973:CDS | 50.0% | |
| CTCACTTACCAGTGCCCTTA+AGG | + | chr3.4:89638647-89638666 | MS.gene012973:CDS | 50.0% | |
| CTGACTGGGGAACTTAACTG+CGG | + | chr3.4:89637646-89637665 | MS.gene012973:intron | 50.0% | |
| GAACCCTCTATTGCTCTTGG+CGG | - | chr3.4:89638249-89638268 | None:intergenic | 50.0% | |
| GCTGTGTATGTGCAGCAGAA+TGG | + | chr3.4:89637521-89637540 | MS.gene012973:intron | 50.0% | |
| GGTAATCTTGTGCAAGGTGG+AGG | + | chr3.4:89636740-89636759 | MS.gene012973:CDS | 50.0% | |
| GTAGGGCTTTCTCCTGATCA+AGG | + | chr3.4:89636710-89636729 | MS.gene012973:CDS | 50.0% | |
| GTATCGCTCAGACCAGTACA+TGG | - | chr3.4:89637258-89637277 | None:intergenic | 50.0% | |
| GTCGAACCCTCTATTGCTCT+TGG | - | chr3.4:89638252-89638271 | None:intergenic | 50.0% | |
| TTAATGGTGGTATGCGAGGG+AGG | + | chr3.4:89636894-89636913 | MS.gene012973:CDS | 50.0% | |
| ! | GGCACTTTTGTGTGCTTGTC+AGG | + | chr3.4:89638319-89638338 | MS.gene012973:intron | 50.0% |
| ! | GGTAATGGTGCAACTGACTG+GGG | + | chr3.4:89637633-89637652 | MS.gene012973:intron | 50.0% |
| !! | ACGGTCGGTTTGGTGTTATG+TGG | + | chr3.4:89638354-89638373 | MS.gene012973:intron | 50.0% |
| !! | AGGTAATGGAGCTGTGGAGA+AGG | + | chr3.4:89636919-89636938 | MS.gene012973:CDS | 50.0% |
| !! | GAGGAAAGGTAATGGAGCTG+TGG | + | chr3.4:89636913-89636932 | MS.gene012973:CDS | 50.0% |
| !! | GTTGCTGGCTTTATGGGGAA+TGG | + | chr3.4:89636413-89636432 | MS.gene012973:CDS | 50.0% |
| !! | TCAAATCGGTGCTGTCTCAC+CGG | + | chr3.4:89636796-89636815 | MS.gene012973:CDS | 50.0% |
| AATGATCAAGGAGCCTCCGC+CGG | + | chr3.4:89635903-89635922 | MS.gene012973:CDS | 55.0% | |
| ACCGTCAGCGAATACACCGA+CGG | - | chr3.4:89635978-89635997 | None:intergenic | 55.0% | |
| ACCGTCGGTGTATTCGCTGA+CGG | + | chr3.4:89635974-89635993 | MS.gene012973:CDS | 55.0% | |
| ATTTACCTGCTTGCGAGCCC+GGG | - | chr3.4:89636999-89637018 | None:intergenic | 55.0% | |
| CCTCCGCCAAGAGCAATAGA+GGG | + | chr3.4:89638243-89638262 | MS.gene012973:intron | 55.0% | |
| CCTCTATTGCTCTTGGCGGA+GGG | - | chr3.4:89638245-89638264 | None:intergenic | 55.0% | |
| CTTGTGCAAGGTGGAGGGAT+TGG | + | chr3.4:89636746-89636765 | MS.gene012973:CDS | 55.0% | |
| ! | GCAAGGTGGAGGGATTGGTA+TGG | + | chr3.4:89636751-89636770 | MS.gene012973:CDS | 55.0% |
| ! | GCACCAGGCGCTGTTCAAAT+CGG | + | chr3.4:89636782-89636801 | MS.gene012973:CDS | 55.0% |
| ! | GGTGGAGGGATTGGTATGGT+TGG | + | chr3.4:89636755-89636774 | MS.gene012973:CDS | 55.0% |
| !! | GGTATGGTTGGTTTGGCACC+AGG | + | chr3.4:89636767-89636786 | MS.gene012973:CDS | 55.0% |
| CAACGGAGGTGGGAGGATAG+CGG | + | chr3.4:89635926-89635945 | MS.gene012973:CDS | 60.0% | |
| CCCTCCGCCAAGAGCAATAG+AGG | + | chr3.4:89638242-89638261 | MS.gene012973:intron | 60.0% | |
| CCCTCTATTGCTCTTGGCGG+AGG | - | chr3.4:89638246-89638265 | None:intergenic | 60.0% | |
| GGAGTCAGCTGCTAGATCCC+GGG | + | chr3.4:89636979-89636998 | MS.gene012973:CDS | 60.0% | |
| GGGAGTCAGCTGCTAGATCC+CGG | + | chr3.4:89636978-89636997 | MS.gene012973:CDS | 60.0% | |
| GGTGGTATGCGAGGGAGGAA+AGG | + | chr3.4:89636899-89636918 | MS.gene012973:CDS | 60.0% | |
| TATCCTCCCACCTCCGTTGC+CGG | - | chr3.4:89635925-89635944 | None:intergenic | 60.0% | |
| ! | CGGGGAATTTTCCGCTGACG+AGG | + | chr3.4:89635949-89635968 | MS.gene012973:CDS | 60.0% |
| !! | GCACCGATTTGAACAGCGCC+TGG | - | chr3.4:89636788-89636807 | None:intergenic | 60.0% |
| ACCGACGGTTGCCTCGTCAG+CGG | - | chr3.4:89635963-89635982 | None:intergenic | 65.0% | |
| TAGATCCCGGGCTCGCAAGC+AGG | + | chr3.4:89636991-89637010 | MS.gene012973:CDS | 65.0% | |
| TCCGCTGACGAGGCAACCGT+CGG | + | chr3.4:89635959-89635978 | MS.gene012973:CDS | 65.0% | |
| CAAGGAGCCTCCGCCGGCAA+CGG | + | chr3.4:89635909-89635928 | MS.gene012973:CDS | 70.0% | |
| ! | CGGAGGTGGGAGGATAGCGG+CGG | + | chr3.4:89635929-89635948 | MS.gene012973:CDS | 70.0% |
| ! | GAGGTGGGAGGATAGCGGCG+GGG | + | chr3.4:89635931-89635950 | MS.gene012973:CDS | 70.0% |
| ! | GGAGGTGGGAGGATAGCGGC+GGG | + | chr3.4:89635930-89635949 | MS.gene012973:CDS | 70.0% |
| CCTCCCACCTCCGTTGCCGG+CGG | - | chr3.4:89635922-89635941 | None:intergenic | 75.0% | |
| CCTCCGCCGGCAACGGAGGT+GGG | + | chr3.4:89635916-89635935 | MS.gene012973:CDS | 75.0% | |
| ! | CCCACCTCCGTTGCCGGCGG+AGG | - | chr3.4:89635919-89635938 | None:intergenic | 80.0% |
| ! | CCGCCGGCAACGGAGGTGGG+AGG | + | chr3.4:89635919-89635938 | MS.gene012973:CDS | 80.0% |
| ! | GCCTCCGCCGGCAACGGAGG+TGG | + | chr3.4:89635915-89635934 | MS.gene012973:CDS | 80.0% |
| ! | GGAGCCTCCGCCGGCAACGG+AGG | + | chr3.4:89635912-89635931 | MS.gene012973:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 89635894 | 89638667 | 89635894 | ID=MS.gene012973 |
| chr3.4 | mRNA | 89635894 | 89638667 | 89635894 | ID=MS.gene012973.t1;Parent=MS.gene012973 |
| chr3.4 | exon | 89635894 | 89636449 | 89635894 | ID=MS.gene012973.t1.exon1;Parent=MS.gene012973.t1 |
| chr3.4 | CDS | 89635894 | 89636449 | 89635894 | ID=cds.MS.gene012973.t1;Parent=MS.gene012973.t1 |
| chr3.4 | exon | 89636693 | 89637012 | 89636693 | ID=MS.gene012973.t1.exon2;Parent=MS.gene012973.t1 |
| chr3.4 | CDS | 89636693 | 89637012 | 89636693 | ID=cds.MS.gene012973.t1;Parent=MS.gene012973.t1 |
| chr3.4 | exon | 89637819 | 89637890 | 89637819 | ID=MS.gene012973.t1.exon3;Parent=MS.gene012973.t1 |
| chr3.4 | CDS | 89637819 | 89637890 | 89637819 | ID=cds.MS.gene012973.t1;Parent=MS.gene012973.t1 |
| chr3.4 | exon | 89638012 | 89638041 | 89638012 | ID=MS.gene012973.t1.exon4;Parent=MS.gene012973.t1 |
| chr3.4 | CDS | 89638012 | 89638041 | 89638012 | ID=cds.MS.gene012973.t1;Parent=MS.gene012973.t1 |
| chr3.4 | exon | 89638623 | 89638667 | 89638623 | ID=MS.gene012973.t1.exon5;Parent=MS.gene012973.t1 |
| chr3.4 | CDS | 89638623 | 89638667 | 89638623 | ID=cds.MS.gene012973.t1;Parent=MS.gene012973.t1 |
| Gene Sequence |
| Protein sequence |
