Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012992.t1 | XP_003603025.1 | 97 | 231 | 7 | 0 | 1 | 231 | 1 | 231 | 5.10E-121 | 443.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012992.t1 | Q69V36 | 52.7 | 237 | 97 | 5 | 2 | 231 | 8 | 236 | 4.2e-55 | 216.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012992.t1 | G7J6B9 | 97.0 | 231 | 7 | 0 | 1 | 231 | 1 | 231 | 3.7e-121 | 443.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene012992.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012992.t1 | MTR_3g101520 | 99.134 | 231 | 2 | 0 | 1 | 231 | 1 | 231 | 4.44e-173 | 475 |
| MS.gene012992.t1 | MTR_3g101520 | 95.671 | 231 | 2 | 1 | 1 | 231 | 1 | 223 | 1.27e-162 | 448 |
| MS.gene012992.t1 | MTR_2g102450 | 42.795 | 229 | 123 | 5 | 5 | 227 | 9 | 235 | 1.04e-47 | 162 |
| MS.gene012992.t1 | MTR_2g102450 | 54.167 | 120 | 55 | 0 | 108 | 227 | 62 | 181 | 4.91e-39 | 138 |
| MS.gene012992.t1 | MTR_4g008310 | 47.934 | 121 | 63 | 0 | 108 | 228 | 191 | 311 | 8.86e-33 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012992.t1 | AT5G42700 | 54.867 | 226 | 95 | 2 | 1 | 225 | 2 | 221 | 7.31e-77 | 231 |
| MS.gene012992.t1 | AT3G19184 | 55.556 | 234 | 94 | 4 | 1 | 231 | 1 | 227 | 6.82e-75 | 228 |
| MS.gene012992.t1 | AT3G19184 | 55.556 | 234 | 94 | 4 | 1 | 231 | 1 | 227 | 8.03e-75 | 228 |
| MS.gene012992.t1 | AT5G42700 | 54.494 | 178 | 75 | 1 | 48 | 225 | 5 | 176 | 4.89e-61 | 190 |
| MS.gene012992.t1 | AT5G58280 | 35.060 | 251 | 135 | 5 | 5 | 227 | 2 | 252 | 2.74e-38 | 135 |
| MS.gene012992.t1 | AT5G58280 | 36.842 | 228 | 128 | 5 | 5 | 226 | 2 | 219 | 8.95e-37 | 130 |
| MS.gene012992.t1 | AT5G58280 | 34.921 | 252 | 135 | 6 | 5 | 227 | 2 | 253 | 1.79e-36 | 130 |
Find 55 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTGAAATTCTATTTCT+AGG | 0.204642 | 3.2:-84536638 | None:intergenic |
| CTCATGTCACTGGTGGATTC+TGG | 0.287144 | 3.2:+84536891 | MS.gene012992:CDS |
| TGAGTCTCCAACTACATATT+TGG | 0.308296 | 3.2:+84539252 | MS.gene012992:CDS |
| ACAACGAGCTCTTTCTTGAT+AGG | 0.331075 | 3.2:-84536452 | None:intergenic |
| GTCATCACTTCGTCCCGTTT+TGG | 0.333776 | 3.2:-84539208 | None:intergenic |
| TTACAGACTTCTTTGTAAAC+AGG | 0.370188 | 3.2:-84536512 | None:intergenic |
| CTTGATAGGGGTGCGAGGTT+TGG | 0.379420 | 3.2:-84536438 | None:intergenic |
| AGTTAAACGCATTGCATTCA+AGG | 0.384822 | 3.2:+84539360 | MS.gene012992:CDS |
| TAGAGTGAATGAGGGTAAAC+AGG | 0.402295 | 3.2:+84539847 | MS.gene012992:CDS |
| CTCGTTGTTGTTCGAAGATC+CGG | 0.408143 | 3.2:+84536467 | MS.gene012992:CDS |
| TACCTAGAAATAGAATTTCA+AGG | 0.423170 | 3.2:+84536636 | MS.gene012992:CDS |
| ACATATTTGGCTCACAAAAC+AGG | 0.425458 | 3.2:+84539265 | MS.gene012992:CDS |
| GGAAGAGAATCAAAAGAGAA+TGG | 0.440339 | 3.2:+84536343 | MS.gene012992:CDS |
| ATTGCTCATAACCTTGTTGA+TGG | 0.442206 | 3.2:+84539316 | MS.gene012992:CDS |
| AGCATTGACTTGACAAAAGT+TGG | 0.443741 | 3.2:-84536863 | None:intergenic |
| TGCGTCCGACGAAGCTAGAA+TGG | 0.446516 | 3.2:+84536790 | MS.gene012992:CDS |
| AGAGAGTCGCCGGAAAAGAA+TGG | 0.454260 | 3.2:+84536322 | MS.gene012992:CDS |
| CAACGAGCTCTTTCTTGATA+GGG | 0.456259 | 3.2:-84536451 | None:intergenic |
| ATCCACCAGTGACATGAGAT+TGG | 0.459124 | 3.2:-84536886 | None:intergenic |
| GCCTTCCAAATCATTTCTGC+AGG | 0.472041 | 3.2:+84539176 | MS.gene012992:CDS |
| ATGACTTTAATTGATGAGGA+TGG | 0.480177 | 3.2:+84539226 | MS.gene012992:CDS |
| GTGAAGTGATTGAGAGAGCT+TGG | 0.490518 | 3.2:-84536381 | None:intergenic |
| GTGGTGGATATGATAAGTAC+AGG | 0.491955 | 3.2:+84536747 | MS.gene012992:CDS |
| TGCTTCCATTCTAGCTTCGT+CGG | 0.496827 | 3.2:-84536795 | None:intergenic |
| GTACATTATTAGAGTGAATG+AGG | 0.501375 | 3.2:+84539838 | MS.gene012992:CDS |
| GTAAACAGGAGCAGGCATAT+TGG | 0.504680 | 3.2:-84536498 | None:intergenic |
| TGGATGATCAGAATCTAAAT+CGG | 0.505469 | 3.2:-84536843 | None:intergenic |
| GGTGCGAGGTTTGGAAGGTG+AGG | 0.511953 | 3.2:-84536429 | None:intergenic |
| CACAAAACAGGACTTAGTGC+TGG | 0.519162 | 3.2:+84539277 | MS.gene012992:CDS |
| ATGCTCCAATCTCATGTCAC+TGG | 0.520101 | 3.2:+84536881 | MS.gene012992:CDS |
| ACTTCTTTGTAAACAGGAGC+AGG | 0.521856 | 3.2:-84536506 | None:intergenic |
| CTCCAATCTCATGTCACTGG+TGG | 0.526085 | 3.2:+84536884 | MS.gene012992:CDS |
| CGAAGCTAGAATGGAAGCAA+TGG | 0.532880 | 3.2:+84536799 | MS.gene012992:CDS |
| TTGTGAGCCAAATATGTAGT+TGG | 0.534295 | 3.2:-84539259 | None:intergenic |
| TTGCTCATAACCTTGTTGAT+GGG | 0.536210 | 3.2:+84539317 | MS.gene012992:CDS |
| GACTTTAATTGATGAGGATG+GGG | 0.536969 | 3.2:+84539228 | MS.gene012992:CDS |
| AGGCATATTGGCGACACGAC+CGG | 0.537317 | 3.2:-84536486 | None:intergenic |
| TCCTGCAGAAATGATTTGGA+AGG | 0.537387 | 3.2:-84539177 | None:intergenic |
| GTGCGAGGTTTGGAAGGTGA+GGG | 0.543398 | 3.2:-84536428 | None:intergenic |
| TGACTTTAATTGATGAGGAT+GGG | 0.546142 | 3.2:+84539227 | MS.gene012992:CDS |
| TGTCACTGGTGGATTCTGGC+TGG | 0.546764 | 3.2:+84536895 | MS.gene012992:CDS |
| TGCTCATAACCTTGTTGATG+GGG | 0.557712 | 3.2:+84539318 | MS.gene012992:CDS |
| ATAGGGGTGCGAGGTTTGGA+AGG | 0.572029 | 3.2:-84536434 | None:intergenic |
| AACGAGCTCTTTCTTGATAG+GGG | 0.578112 | 3.2:-84536450 | None:intergenic |
| GGACTTAGTGCTGGATGGAG+AGG | 0.579069 | 3.2:+84539286 | MS.gene012992:CDS |
| GTACAGGGATTATTCGAAGC+GGG | 0.591336 | 3.2:+84536763 | MS.gene012992:CDS |
| TACATTATTAGAGTGAATGA+GGG | 0.593532 | 3.2:+84539839 | MS.gene012992:CDS |
| AAACAGGACTTAGTGCTGGA+TGG | 0.601864 | 3.2:+84539281 | MS.gene012992:CDS |
| CATCATACGAAGAGAGTCGC+CGG | 0.603151 | 3.2:+84536312 | MS.gene012992:CDS |
| AGTGATGACTTTAATTGATG+AGG | 0.610611 | 3.2:+84539222 | MS.gene012992:CDS |
| TAGAATGGAAGCAATGGAGA+AGG | 0.631866 | 3.2:+84536805 | MS.gene012992:CDS |
| TGGTGGATATGATAAGTACA+GGG | 0.664434 | 3.2:+84536748 | MS.gene012992:CDS |
| TCTTTCTTGATAGGGGTGCG+AGG | 0.664811 | 3.2:-84536443 | None:intergenic |
| TTAAAGCATCCCCATCAACA+AGG | 0.671282 | 3.2:-84539327 | None:intergenic |
| AGTACAGGGATTATTCGAAG+CGG | 0.715139 | 3.2:+84536762 | MS.gene012992:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTAATTTATTTGTACA+AGG | - | chr3.2:84539041-84539060 | None:intergenic | 10.0% |
| !! | AACATAACATATATAATAGT+TGG | - | chr3.2:84538933-84538952 | None:intergenic | 15.0% |
| !! | ACATAACATATATAATAGTT+GGG | - | chr3.2:84538932-84538951 | None:intergenic | 15.0% |
| !! | ATACAACTACAATTTATAAT+TGG | + | chr3.2:84539123-84539142 | MS.gene012992:intron | 15.0% |
| !! | TATAAAGATGTTAAAAAAAG+AGG | + | chr3.2:84537040-84537059 | MS.gene012992:intron | 15.0% |
| !! | TATTATATATGTTATGTTGA+GGG | + | chr3.2:84538935-84538954 | MS.gene012992:intron | 15.0% |
| !! | TGATAACATGTATTATAAAT+AGG | - | chr3.2:84539569-84539588 | None:intergenic | 15.0% |
| !! | TTGACAAATTTAAATCTATA+TGG | + | chr3.2:84538895-84538914 | MS.gene012992:intron | 15.0% |
| !! | TTTCATAATATAAAATGAAG+TGG | + | chr3.2:84537689-84537708 | MS.gene012992:intron | 15.0% |
| !!! | AAGTATCTTATTTTTATGAA+AGG | - | chr3.2:84537436-84537455 | None:intergenic | 15.0% |
| !!! | AGTATCTTATTTTTATGAAA+GGG | - | chr3.2:84537435-84537454 | None:intergenic | 15.0% |
| !!! | TTATAATTGGTTAATCATTT+TGG | + | chr3.2:84539136-84539155 | MS.gene012992:intron | 15.0% |
| !! | AAAAAACATACATTAGACAA+TGG | - | chr3.2:84537749-84537768 | None:intergenic | 20.0% |
| !! | AATACTACTGATATTTATCT+AGG | + | chr3.2:84539722-84539741 | MS.gene012992:intron | 20.0% |
| !! | AGTAAATAATCTAATATAGG+TGG | - | chr3.2:84537954-84537973 | None:intergenic | 20.0% |
| !! | CCACATTGAAATAAATATAA+TGG | - | chr3.2:84539630-84539649 | None:intergenic | 20.0% |
| !! | CCATTATATTTATTTCAATG+TGG | + | chr3.2:84539627-84539646 | MS.gene012992:intron | 20.0% |
| !! | CTATTATATATGTTATGTTG+AGG | + | chr3.2:84538934-84538953 | MS.gene012992:intron | 20.0% |
| !! | GAGAGTAAATAATCTAATAT+AGG | - | chr3.2:84537957-84537976 | None:intergenic | 20.0% |
| !! | GTAAATAATCTAATATAGGT+GGG | - | chr3.2:84537953-84537972 | None:intergenic | 20.0% |
| !! | TATATTTATTTCAATGTGGA+GGG | + | chr3.2:84539631-84539650 | MS.gene012992:intron | 20.0% |
| !! | TTATATTTATTTCAATGTGG+AGG | + | chr3.2:84539630-84539649 | MS.gene012992:intron | 20.0% |
| !!! | ATAAATAGGAGTATTGAAAA+AGG | - | chr3.2:84539555-84539574 | None:intergenic | 20.0% |
| !!! | ATTAACATTCTCTCTTTTAA+TGG | - | chr3.2:84537471-84537490 | None:intergenic | 20.0% |
| !!! | GAAAATGTAATGAATTTTTC+TGG | - | chr3.2:84537528-84537547 | None:intergenic | 20.0% |
| !!! | GTATCTTATTTTTATGAAAG+GGG | - | chr3.2:84537434-84537453 | None:intergenic | 20.0% |
| !!! | TAAATAGGAGTATTGAAAAA+GGG | - | chr3.2:84539554-84539573 | None:intergenic | 20.0% |
| !!! | TATTCATTGATTAACATATG+TGG | - | chr3.2:84539790-84539809 | None:intergenic | 20.0% |
| !!! | TCTATTTCTAGGTATTTTAA+CGG | - | chr3.2:84536630-84536649 | None:intergenic | 20.0% |
| ! | AAGAGATACAAAATTTGAGT+TGG | - | chr3.2:84538652-84538671 | None:intergenic | 25.0% |
| ! | AGTAATAGAGAAAGATGAAA+TGG | - | chr3.2:84536560-84536579 | None:intergenic | 25.0% |
| ! | ATAATGAGATTGCTAACTAT+AGG | - | chr3.2:84539766-84539785 | None:intergenic | 25.0% |
| ! | ATGTTAATCAATGAATAGTG+TGG | + | chr3.2:84539793-84539812 | MS.gene012992:intron | 25.0% |
| ! | CGAATAAAATTATGTCATTC+TGG | + | chr3.2:84538975-84538994 | MS.gene012992:intron | 25.0% |
| ! | CTTTATAAACGAAAACACAT+AGG | - | chr3.2:84538798-84538817 | None:intergenic | 25.0% |
| ! | GAATATAGCACGATTAAATA+TGG | - | chr3.2:84539438-84539457 | None:intergenic | 25.0% |
| ! | TACATTATTAGAGTGAATGA+GGG | + | chr3.2:84539839-84539858 | MS.gene012992:CDS | 25.0% |
| ! | TACCTAGAAATAGAATTTCA+AGG | + | chr3.2:84536636-84536655 | MS.gene012992:CDS | 25.0% |
| ! | TGAAGAAAGAAAATTGACAT+TGG | - | chr3.2:84537614-84537633 | None:intergenic | 25.0% |
| ! | TGTCTATTGTATGTTAGTAT+GGG | + | chr3.2:84537781-84537800 | MS.gene012992:intron | 25.0% |
| ! | TTGTCTATTGTATGTTAGTA+TGG | + | chr3.2:84537780-84537799 | MS.gene012992:intron | 25.0% |
| !! | AACCTTGAAATTCTATTTCT+AGG | - | chr3.2:84536641-84536660 | None:intergenic | 25.0% |
| !! | AATGTAATGAATTTTTCTGG+TGG | - | chr3.2:84537525-84537544 | None:intergenic | 25.0% |
| !! | CATTTTGTATGTATAAATGC+TGG | + | chr3.2:84537095-84537114 | MS.gene012992:intron | 25.0% |
| !! | GTTCAACAAAATCTTGTTTA+AGG | + | chr3.2:84537853-84537872 | MS.gene012992:intron | 25.0% |
| !!! | AGTTCACTTTTTTATTACTG+TGG | + | chr3.2:84536986-84537005 | MS.gene012992:intron | 25.0% |
| !!! | ATAAATGCTGGTTTTGTTAT+TGG | + | chr3.2:84537107-84537126 | MS.gene012992:intron | 25.0% |
| !!! | ATATTTTTTCTGTGTAGATG+TGG | + | chr3.2:84536728-84536747 | MS.gene012992:intron | 25.0% |
| !!! | ATTTGTTTTGGCTTTAAATG+AGG | - | chr3.2:84538097-84538116 | None:intergenic | 25.0% |
| AAAACCTATACTACTCTCTA+TGG | + | chr3.2:84537563-84537582 | MS.gene012992:intron | 30.0% | |
| AAAGATGAAATGGTGAATGT+GGG | - | chr3.2:84536550-84536569 | None:intergenic | 30.0% | |
| AACATTCGTTGTAACTACTT+TGG | + | chr3.2:84537712-84537731 | MS.gene012992:intron | 30.0% | |
| AAGCCAAAACAAATCTTTGT+AGG | + | chr3.2:84538103-84538122 | MS.gene012992:intron | 30.0% | |
| AATGCTTCCATTGAGTAAAA+AGG | - | chr3.2:84537303-84537322 | None:intergenic | 30.0% | |
| AATTTATTTGTACAAGGCTC+TGG | - | chr3.2:84539035-84539054 | None:intergenic | 30.0% | |
| ACATTCGTTGTAACTACTTT+GGG | + | chr3.2:84537713-84537732 | MS.gene012992:intron | 30.0% | |
| AGATGAATGTTATATGCATG+TGG | + | chr3.2:84539507-84539526 | MS.gene012992:intron | 30.0% | |
| AGGTACTTGAAAAAGAGTAA+CGG | - | chr3.2:84537227-84537246 | None:intergenic | 30.0% | |
| AGTGATGACTTTAATTGATG+AGG | + | chr3.2:84539222-84539241 | MS.gene012992:CDS | 30.0% | |
| ATGACTTTAATTGATGAGGA+TGG | + | chr3.2:84539226-84539245 | MS.gene012992:CDS | 30.0% | |
| ATGCTTCCATTGAGTAAAAA+GGG | - | chr3.2:84537302-84537321 | None:intergenic | 30.0% | |
| CATTTCCATGGACTTAAAAT+AGG | - | chr3.2:84538505-84538524 | None:intergenic | 30.0% | |
| GCATTCAAAGCAATAACTAA+AGG | - | chr3.2:84537247-84537266 | None:intergenic | 30.0% | |
| GCTAGTTGTATTGAATTGAA+AGG | - | chr3.2:84539066-84539085 | None:intergenic | 30.0% | |
| GTACATTATTAGAGTGAATG+AGG | + | chr3.2:84539838-84539857 | MS.gene012992:CDS | 30.0% | |
| TATATGCATGTGGCTAATAA+TGG | + | chr3.2:84539517-84539536 | MS.gene012992:intron | 30.0% | |
| TGACTTTAATTGATGAGGAT+GGG | + | chr3.2:84539227-84539246 | MS.gene012992:CDS | 30.0% | |
| TGGATGATCAGAATCTAAAT+CGG | - | chr3.2:84536846-84536865 | None:intergenic | 30.0% | |
| TTACAGACTTCTTTGTAAAC+AGG | - | chr3.2:84536515-84536534 | None:intergenic | 30.0% | |
| TTTAATCGTGCTATATTCCT+TGG | + | chr3.2:84539440-84539459 | MS.gene012992:intron | 30.0% | |
| ! | AGAGATTAGTTACTGCTAAA+GGG | + | chr3.2:84538999-84539018 | MS.gene012992:intron | 30.0% |
| ! | GAATGTTCTTTTGAATACCA+AGG | - | chr3.2:84539460-84539479 | None:intergenic | 30.0% |
| ! | GGTTGCTAAAATTTTCTTTC+AGG | + | chr3.2:84539814-84539833 | MS.gene012992:intron | 30.0% |
| ! | TTGTAACTACTTTGGGAATT+TGG | + | chr3.2:84537720-84537739 | MS.gene012992:intron | 30.0% |
| ! | TTTTTCCTGCAGAAATGATT+TGG | - | chr3.2:84539184-84539203 | None:intergenic | 30.0% |
| !! | AATGAATTTTTCTGGTGGAA+GGG | - | chr3.2:84537520-84537539 | None:intergenic | 30.0% |
| !! | GTTCCTACAAAGATTTGTTT+TGG | - | chr3.2:84538109-84538128 | None:intergenic | 30.0% |
| !! | TAATGAATTTTTCTGGTGGA+AGG | - | chr3.2:84537521-84537540 | None:intergenic | 30.0% |
| !! | TTGCTTTGAATGCTTTTCAA+TGG | + | chr3.2:84537254-84537273 | MS.gene012992:intron | 30.0% |
| !!! | GGTTTTGTTATTGGTTTCAA+TGG | + | chr3.2:84537116-84537135 | MS.gene012992:intron | 30.0% |
| !!! | TTTTTTTTGTGTGTGTGTGT+TGG | + | chr3.2:84538004-84538023 | MS.gene012992:intron | 30.0% |
| AAAGTTAGTAGTCACTAGTC+AGG | - | chr3.2:84537650-84537669 | None:intergenic | 35.0% | |
| AATAAACAGAGTTCAAGCCA+TGG | - | chr3.2:84537146-84537165 | None:intergenic | 35.0% | |
| AATGCTCCCATTGAATAAAG+GGG | - | chr3.2:84537369-84537388 | None:intergenic | 35.0% | |
| ACTTAAGTCTATAGCTCACA+TGG | + | chr3.2:84538408-84538427 | MS.gene012992:intron | 35.0% | |
| AGAATGCTCCCATTGAATAA+AGG | - | chr3.2:84537371-84537390 | None:intergenic | 35.0% | |
| AGATAGAAAACACACCACAA+AGG | + | chr3.2:84538439-84538458 | MS.gene012992:intron | 35.0% | |
| AGTTAAACGCATTGCATTCA+AGG | + | chr3.2:84539360-84539379 | MS.gene012992:CDS | 35.0% | |
| ATTGCTCATAACCTTGTTGA+TGG | + | chr3.2:84539316-84539335 | MS.gene012992:CDS | 35.0% | |
| GAAAGATGAAATGGTGAATG+TGG | - | chr3.2:84536551-84536570 | None:intergenic | 35.0% | |
| GAATGCTCCCATTGAATAAA+GGG | - | chr3.2:84537370-84537389 | None:intergenic | 35.0% | |
| GACTTTAATTGATGAGGATG+GGG | + | chr3.2:84539228-84539247 | MS.gene012992:CDS | 35.0% | |
| GGAAGAGAATCAAAAGAGAA+TGG | + | chr3.2:84536343-84536362 | MS.gene012992:CDS | 35.0% | |
| TCAAGTCCCCTTTATTCAAT+GGG | + | chr3.2:84537360-84537379 | MS.gene012992:intron | 35.0% | |
| TGAGTCTCCAACTACATATT+TGG | + | chr3.2:84539252-84539271 | MS.gene012992:CDS | 35.0% | |
| TGCTTCCATTGAGTAAAAAG+GGG | - | chr3.2:84537301-84537320 | None:intergenic | 35.0% | |
| TTCAAGTCCCCTTTATTCAA+TGG | + | chr3.2:84537359-84537378 | MS.gene012992:intron | 35.0% | |
| TTGCTCATAACCTTGTTGAT+GGG | + | chr3.2:84539317-84539336 | MS.gene012992:CDS | 35.0% | |
| TTGTGAGCCAAATATGTAGT+TGG | - | chr3.2:84539262-84539281 | None:intergenic | 35.0% | |
| TTGTTTGTTCATTCATGCCT+TGG | + | chr3.2:84539397-84539416 | MS.gene012992:intron | 35.0% | |
| ! | AAGGTTTGTTCTTTCTTCTG+TGG | + | chr3.2:84536655-84536674 | MS.gene012992:intron | 35.0% |
| ! | ACATATTTGGCTCACAAAAC+AGG | + | chr3.2:84539265-84539284 | MS.gene012992:CDS | 35.0% |
| ! | ATCTAATATAGGTGGGTTTC+TGG | - | chr3.2:84537946-84537965 | None:intergenic | 35.0% |
| ! | CAGAGATTAGTTACTGCTAA+AGG | + | chr3.2:84538998-84539017 | MS.gene012992:intron | 35.0% |
| ! | CTTTTCAATGGAAGTTGTTG+AGG | + | chr3.2:84537266-84537285 | MS.gene012992:intron | 35.0% |
| ! | GATTCTCTTCCATTCTTTTC+CGG | - | chr3.2:84536334-84536353 | None:intergenic | 35.0% |
| ! | GCTTATGCACTTTTACTGAA+TGG | + | chr3.2:84537173-84537192 | MS.gene012992:intron | 35.0% |
| ! | TGATTACTTGGGTTAGACTA+GGG | - | chr3.2:84538726-84538745 | None:intergenic | 35.0% |
| ! | TGGTGGATATGATAAGTACA+GGG | + | chr3.2:84536748-84536767 | MS.gene012992:CDS | 35.0% |
| ! | TTATGCCCCTTTTTACTCAA+TGG | + | chr3.2:84537293-84537312 | MS.gene012992:intron | 35.0% |
| ! | TTGGTTTCAATGGTTTTCCA+TGG | + | chr3.2:84537126-84537145 | MS.gene012992:intron | 35.0% |
| !! | AGCATTGACTTGACAAAAGT+TGG | - | chr3.2:84536866-84536885 | None:intergenic | 35.0% |
| !! | ATGAATTTTTCTGGTGGAAG+GGG | - | chr3.2:84537519-84537538 | None:intergenic | 35.0% |
| !!! | TTTTTTCTGTGTAGATGTGG+TGG | + | chr3.2:84536731-84536750 | MS.gene012992:intron | 35.0% |
| AACACATAGGTGTACATCAG+AGG | - | chr3.2:84538785-84538804 | None:intergenic | 40.0% | |
| AACGAGCTCTTTCTTGATAG+GGG | - | chr3.2:84536453-84536472 | None:intergenic | 40.0% | |
| AATCTCACCGTTCATTTGTG+GGG | + | chr3.2:84538070-84538089 | MS.gene012992:intron | 40.0% | |
| ACAACGAGCTCTTTCTTGAT+AGG | - | chr3.2:84536455-84536474 | None:intergenic | 40.0% | |
| ACCCAAGTTGTAATTGTGAC+TGG | + | chr3.2:84538218-84538237 | MS.gene012992:intron | 40.0% | |
| ACTTCTTTGTAAACAGGAGC+AGG | - | chr3.2:84536509-84536528 | None:intergenic | 40.0% | |
| AGATAGAACACACACCAGAA+AGG | + | chr3.2:84538563-84538582 | MS.gene012992:intron | 40.0% | |
| AGGAACTAACCCACCAAAAT+TGG | + | chr3.2:84538123-84538142 | MS.gene012992:intron | 40.0% | |
| AGGGGCTTGAAAGATTGTAA+CGG | - | chr3.2:84537416-84537435 | None:intergenic | 40.0% | |
| AGTACAGGGATTATTCGAAG+CGG | + | chr3.2:84536762-84536781 | MS.gene012992:CDS | 40.0% | |
| CAACGAGCTCTTTCTTGATA+GGG | - | chr3.2:84536454-84536473 | None:intergenic | 40.0% | |
| CAATCTCACCGTTCATTTGT+GGG | + | chr3.2:84538069-84538088 | MS.gene012992:intron | 40.0% | |
| CAGGAAAAACCTTCCAAAAC+GGG | + | chr3.2:84539195-84539214 | MS.gene012992:CDS | 40.0% | |
| GCAGGAAAAACCTTCCAAAA+CGG | + | chr3.2:84539194-84539213 | MS.gene012992:CDS | 40.0% | |
| GCCAGTCACAATTACAACTT+GGG | - | chr3.2:84538222-84538241 | None:intergenic | 40.0% | |
| GGTAGATGTGTTAAACACCA+AGG | - | chr3.2:84539417-84539436 | None:intergenic | 40.0% | |
| GTCACAATTACAACTTGGGT+TGG | - | chr3.2:84538218-84538237 | None:intergenic | 40.0% | |
| GTGTGTGTGTGTGATTACTT+GGG | - | chr3.2:84538737-84538756 | None:intergenic | 40.0% | |
| TAACCCACCAAAATTGGCAT+TGG | + | chr3.2:84538129-84538148 | MS.gene012992:intron | 40.0% | |
| TAGAATGGAAGCAATGGAGA+AGG | + | chr3.2:84536805-84536824 | MS.gene012992:CDS | 40.0% | |
| TAGAGTGAATGAGGGTAAAC+AGG | + | chr3.2:84539847-84539866 | MS.gene012992:CDS | 40.0% | |
| TGAAATGGTGAATGTGGGTT+AGG | - | chr3.2:84536545-84536564 | None:intergenic | 40.0% | |
| TGCATTCTTTGCTTCCTTTC+TGG | - | chr3.2:84538580-84538599 | None:intergenic | 40.0% | |
| TGCATTCTTTGCTTCCTTTG+TGG | - | chr3.2:84538456-84538475 | None:intergenic | 40.0% | |
| TGCCAGTCACAATTACAACT+TGG | - | chr3.2:84538223-84538242 | None:intergenic | 40.0% | |
| TGCTCATAACCTTGTTGATG+GGG | + | chr3.2:84539318-84539337 | MS.gene012992:CDS | 40.0% | |
| TGTGTGTGTGTGTGATTACT+TGG | - | chr3.2:84538738-84538757 | None:intergenic | 40.0% | |
| ! | AGTGTGTTACTGTTGAGTGA+GGG | - | chr3.2:84538689-84538708 | None:intergenic | 40.0% |
| ! | ATTCCCTCCAATGCCAATTT+TGG | - | chr3.2:84538139-84538158 | None:intergenic | 40.0% |
| ! | GAAATGGTGAATGTGGGTTA+GGG | - | chr3.2:84536544-84536563 | None:intergenic | 40.0% |
| ! | GTGATTACTTGGGTTAGACT+AGG | - | chr3.2:84538727-84538746 | None:intergenic | 40.0% |
| ! | TCCTGCAGAAATGATTTGGA+AGG | - | chr3.2:84539180-84539199 | None:intergenic | 40.0% |
| ! | TGCTGTTAGCTTGAAACCTT+GGG | - | chr3.2:84538190-84538209 | None:intergenic | 40.0% |
| ! | TTAAAGCATCCCCATCAACA+AGG | - | chr3.2:84539330-84539349 | None:intergenic | 40.0% |
| !! | GTGGTGGATATGATAAGTAC+AGG | + | chr3.2:84536747-84536766 | MS.gene012992:CDS | 40.0% |
| !! | TCGCACCTATTTTAAGTCCA+TGG | + | chr3.2:84538497-84538516 | MS.gene012992:intron | 40.0% |
| !!! | AAGGTGAGGGTTTTGAAATG+GGG | - | chr3.2:84536418-84536437 | None:intergenic | 40.0% |
| !!! | GAAGGTGAGGGTTTTGAAAT+GGG | - | chr3.2:84536419-84536438 | None:intergenic | 40.0% |
| ACGCACAGTTGCTTGCTTAT+CGG | + | chr3.2:84537902-84537921 | MS.gene012992:intron | 45.0% | |
| ATCCACCAGTGACATGAGAT+TGG | - | chr3.2:84536889-84536908 | None:intergenic | 45.0% | |
| ATCTCACCGTTCATTTGTGG+GGG | + | chr3.2:84538071-84538090 | MS.gene012992:intron | 45.0% | |
| ATGAAAACCGAGACCTTGAG+AGG | + | chr3.2:84538157-84538176 | MS.gene012992:intron | 45.0% | |
| ATGCTCCAATCTCATGTCAC+TGG | + | chr3.2:84536881-84536900 | MS.gene012992:CDS | 45.0% | |
| ATTGGACCCCTCGAATTAGT+CGG | - | chr3.2:84538053-84538072 | None:intergenic | 45.0% | |
| CACAAAACAGGACTTAGTGC+TGG | + | chr3.2:84539277-84539296 | MS.gene012992:CDS | 45.0% | |
| CCAATCTCACCGTTCATTTG+TGG | + | chr3.2:84538068-84538087 | MS.gene012992:intron | 45.0% | |
| CCACAAATGAACGGTGAGAT+TGG | - | chr3.2:84538071-84538090 | None:intergenic | 45.0% | |
| CGAAGCTAGAATGGAAGCAA+TGG | + | chr3.2:84536799-84536818 | MS.gene012992:CDS | 45.0% | |
| CGCTCCATAGAGAGTAGTAT+AGG | - | chr3.2:84537570-84537589 | None:intergenic | 45.0% | |
| GCCTTCCAAATCATTTCTGC+AGG | + | chr3.2:84539176-84539195 | MS.gene012992:CDS | 45.0% | |
| GGGGACTTGAAAGATTGTAG+CGG | - | chr3.2:84537350-84537369 | None:intergenic | 45.0% | |
| GTAAACAGGAGCAGGCATAT+TGG | - | chr3.2:84536501-84536520 | None:intergenic | 45.0% | |
| GTACAGGGATTATTCGAAGC+GGG | + | chr3.2:84536763-84536782 | MS.gene012992:CDS | 45.0% | |
| GTGAAGTGATTGAGAGAGCT+TGG | - | chr3.2:84536384-84536403 | None:intergenic | 45.0% | |
| GTGTGAGCTATCAACTCACA+AGG | - | chr3.2:84538533-84538552 | None:intergenic | 45.0% | |
| GTGTGTGTGTGTTGGAAACT+CGG | + | chr3.2:84538012-84538031 | MS.gene012992:intron | 45.0% | |
| TGTGTTGGAAACTCGGTATC+TGG | + | chr3.2:84538019-84538038 | MS.gene012992:intron | 45.0% | |
| TTAGAACAGCACACAGCACA+TGG | - | chr3.2:84539601-84539620 | None:intergenic | 45.0% | |
| TTTGGCATGCCTCAACAACA+GGG | + | chr3.2:84539154-84539173 | MS.gene012992:intron | 45.0% | |
| ! | AAACAGGACTTAGTGCTGGA+TGG | + | chr3.2:84539281-84539300 | MS.gene012992:CDS | 45.0% |
| ! | CCACCAAAATTGGCATTGGA+GGG | + | chr3.2:84538133-84538152 | MS.gene012992:intron | 45.0% |
| ! | CTCGTTGTTGTTCGAAGATC+CGG | + | chr3.2:84536467-84536486 | MS.gene012992:CDS | 45.0% |
| ! | GAGTGTGTTACTGTTGAGTG+AGG | - | chr3.2:84538690-84538709 | None:intergenic | 45.0% |
| ! | GCTGTTAGCTTGAAACCTTG+GGG | - | chr3.2:84538189-84538208 | None:intergenic | 45.0% |
| ! | GTGCTGTTAGCTTGAAACCT+TGG | - | chr3.2:84538191-84538210 | None:intergenic | 45.0% |
| ! | TTTTGGCATGCCTCAACAAC+AGG | + | chr3.2:84539153-84539172 | MS.gene012992:intron | 45.0% |
| !! | AATTACAACTTGGGTTGGCC+TGG | - | chr3.2:84538213-84538232 | None:intergenic | 45.0% |
| !! | CACAAGGAAGAGCATTTCCA+TGG | - | chr3.2:84538517-84538536 | None:intergenic | 45.0% |
| !! | CCTCCAATGCCAATTTTGGT+GGG | - | chr3.2:84538135-84538154 | None:intergenic | 45.0% |
| !! | TGCTTCCATTCTAGCTTCGT+CGG | - | chr3.2:84536798-84536817 | None:intergenic | 45.0% |
| !!! | AGGTGAGGGTTTTGAAATGG+GGG | - | chr3.2:84536417-84536436 | None:intergenic | 45.0% |
| !!! | GGAAGGTGAGGGTTTTGAAA+TGG | - | chr3.2:84536420-84536439 | None:intergenic | 45.0% |
| ACACACACACACACACACAC+GGG | + | chr3.2:84538745-84538764 | MS.gene012992:intron | 50.0% | |
| AGAGAGTCGCCGGAAAAGAA+TGG | + | chr3.2:84536322-84536341 | MS.gene012992:CDS | 50.0% | |
| ATGAGGCCCCCACAAATGAA+CGG | - | chr3.2:84538080-84538099 | None:intergenic | 50.0% | |
| CAAGGACCGACTAATTCGAG+GGG | + | chr3.2:84538044-84538063 | MS.gene012992:intron | 50.0% | |
| CACACACACACACACACACA+CGG | + | chr3.2:84538744-84538763 | MS.gene012992:intron | 50.0% | |
| CATCATACGAAGAGAGTCGC+CGG | + | chr3.2:84536312-84536331 | MS.gene012992:CDS | 50.0% | |
| CCAAGGACCGACTAATTCGA+GGG | + | chr3.2:84538043-84538062 | MS.gene012992:intron | 50.0% | |
| CCTCGAATTAGTCGGTCCTT+GGG | - | chr3.2:84538045-84538064 | None:intergenic | 50.0% | |
| CTCCAATCTCATGTCACTGG+TGG | + | chr3.2:84536884-84536903 | MS.gene012992:CDS | 50.0% | |
| GGTTTCAAGCTAACAGCACC+AGG | + | chr3.2:84538192-84538211 | MS.gene012992:intron | 50.0% | |
| TTTGGAAGGCCCTGTTGTTG+AGG | - | chr3.2:84539166-84539185 | None:intergenic | 50.0% | |
| ! | CCCACCAAAATTGGCATTGG+AGG | + | chr3.2:84538132-84538151 | MS.gene012992:intron | 50.0% |
| ! | CCCTCCAATGCCAATTTTGG+TGG | - | chr3.2:84538136-84538155 | None:intergenic | 50.0% |
| ! | GTCATCACTTCGTCCCGTTT+TGG | - | chr3.2:84539211-84539230 | None:intergenic | 50.0% |
| ! | TCTTTCTTGATAGGGGTGCG+AGG | - | chr3.2:84536446-84536465 | None:intergenic | 50.0% |
| !! | CTCATGTCACTGGTGGATTC+TGG | + | chr3.2:84536891-84536910 | MS.gene012992:CDS | 50.0% |
| !! | GGTGAATGTGGGTTAGGGTT+TGG | - | chr3.2:84536539-84536558 | None:intergenic | 50.0% |
| !! | TCACTTCGTCCCGTTTTGGA+AGG | - | chr3.2:84539207-84539226 | None:intergenic | 50.0% |
| !! | TTTTCTGGTGGAAGGGGAGA+GGG | - | chr3.2:84537513-84537532 | None:intergenic | 50.0% |
| !! | TTTTTCTGGTGGAAGGGGAG+AGG | - | chr3.2:84537514-84537533 | None:intergenic | 50.0% |
| ACACACACACACACACGGGT+TGG | + | chr3.2:84538755-84538774 | MS.gene012992:intron | 55.0% | |
| AGGCATATTGGCGACACGAC+CGG | - | chr3.2:84536489-84536508 | None:intergenic | 55.0% | |
| CCCAAGGACCGACTAATTCG+AGG | + | chr3.2:84538042-84538061 | MS.gene012992:intron | 55.0% | |
| CCCTCGAATTAGTCGGTCCT+TGG | - | chr3.2:84538046-84538065 | None:intergenic | 55.0% | |
| GAAACTCGGTATCTGGCCCA+AGG | + | chr3.2:84538026-84538045 | MS.gene012992:intron | 55.0% | |
| GTGCGAGGTTTGGAAGGTGA+GGG | - | chr3.2:84536431-84536450 | None:intergenic | 55.0% | |
| GTGTGCTCCTCTCAAGGTCT+CGG | - | chr3.2:84538167-84538186 | None:intergenic | 55.0% | |
| TGCGTCCGACGAAGCTAGAA+TGG | + | chr3.2:84536790-84536809 | MS.gene012992:CDS | 55.0% | |
| ! | ATAGGGGTGCGAGGTTTGGA+AGG | - | chr3.2:84536437-84536456 | None:intergenic | 55.0% |
| ! | CTTGATAGGGGTGCGAGGTT+TGG | - | chr3.2:84536441-84536460 | None:intergenic | 55.0% |
| ! | GGACTTAGTGCTGGATGGAG+AGG | + | chr3.2:84539286-84539305 | MS.gene012992:CDS | 55.0% |
| ! | TTTCTGGTGGAAGGGGAGAG+GGG | - | chr3.2:84537512-84537531 | None:intergenic | 55.0% |
| !! | TGTCACTGGTGGATTCTGGC+TGG | + | chr3.2:84536895-84536914 | MS.gene012992:CDS | 55.0% |
| CTTGGGGTGTGCTCCTCTCA+AGG | - | chr3.2:84538173-84538192 | None:intergenic | 60.0% | |
| GGTGCGAGGTTTGGAAGGTG+AGG | - | chr3.2:84536432-84536451 | None:intergenic | 60.0% | |
| ! | CTTGAGAGGAGCACACCCCA+AGG | + | chr3.2:84538171-84538190 | MS.gene012992:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 84536296 | 84539877 | 84536296 | ID=MS.gene012992 |
| chr3.2 | mRNA | 84536296 | 84539877 | 84536296 | ID=MS.gene012992.t1;Parent=MS.gene012992 |
| chr3.2 | exon | 84536296 | 84536526 | 84536296 | ID=MS.gene012992.t1.exon1;Parent=MS.gene012992.t1 |
| chr3.2 | CDS | 84536296 | 84536526 | 84536296 | ID=cds.MS.gene012992.t1;Parent=MS.gene012992.t1 |
| chr3.2 | exon | 84536614 | 84536657 | 84536614 | ID=MS.gene012992.t1.exon2;Parent=MS.gene012992.t1 |
| chr3.2 | CDS | 84536614 | 84536657 | 84536614 | ID=cds.MS.gene012992.t1;Parent=MS.gene012992.t1 |
| chr3.2 | exon | 84536745 | 84536916 | 84536745 | ID=MS.gene012992.t1.exon3;Parent=MS.gene012992.t1 |
| chr3.2 | CDS | 84536745 | 84536916 | 84536745 | ID=cds.MS.gene012992.t1;Parent=MS.gene012992.t1 |
| chr3.2 | exon | 84539175 | 84539381 | 84539175 | ID=MS.gene012992.t1.exon4;Parent=MS.gene012992.t1 |
| chr3.2 | CDS | 84539175 | 84539381 | 84539175 | ID=cds.MS.gene012992.t1;Parent=MS.gene012992.t1 |
| chr3.2 | exon | 84539836 | 84539877 | 84539836 | ID=MS.gene012992.t1.exon5;Parent=MS.gene012992.t1 |
| chr3.2 | CDS | 84539836 | 84539877 | 84539836 | ID=cds.MS.gene012992.t1;Parent=MS.gene012992.t1 |
| Gene Sequence |
| Protein sequence |
