AlfalfaGEDB | MS.gene012992

M. sativa cultivar XinJiangDaYe / MS.gene012992

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012992.t1	XP_003603025.1	97	231	7	0	1	231	1	231	5.10E-121	443.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012992.t1	Q69V36	52.7	237	97	5	2	231	8	236	4.2e-55	216.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012992.t1	G7J6B9	97.0	231	7	0	1	231	1	231	3.7e-121	443.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene012992.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012992.t1	MTR_3g101520	99.134	231	2	0	1	231	1	231	4.44e-173	475
MS.gene012992.t1	MTR_3g101520	95.671	231	2	1	1	231	1	223	1.27e-162	448
MS.gene012992.t1	MTR_2g102450	42.795	229	123	5	5	227	9	235	1.04e-47	162
MS.gene012992.t1	MTR_2g102450	54.167	120	55	0	108	227	62	181	4.91e-39	138
MS.gene012992.t1	MTR_4g008310	47.934	121	63	0	108	228	191	311	8.86e-33	121

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012992.t1	AT5G42700	54.867	226	95	2	1	225	2	221	7.31e-77	231
MS.gene012992.t1	AT3G19184	55.556	234	94	4	1	231	1	227	6.82e-75	228
MS.gene012992.t1	AT3G19184	55.556	234	94	4	1	231	1	227	8.03e-75	228
MS.gene012992.t1	AT5G42700	54.494	178	75	1	48	225	5	176	4.89e-61	190
MS.gene012992.t1	AT5G58280	35.060	251	135	5	5	227	2	252	2.74e-38	135
MS.gene012992.t1	AT5G58280	36.842	228	128	5	5	226	2	219	8.95e-37	130
MS.gene012992.t1	AT5G58280	34.921	252	135	6	5	227	2	253	1.79e-36	130

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Find 55 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGGACTTAGTGCTGGA+TGG	0.601864	3.2:+84539281	MS.gene012992:CDS
AACCTTGAAATTCTATTTCT+AGG	0.204642	3.2:-84536638	None:intergenic
AACGAGCTCTTTCTTGATAG+GGG	0.578112	3.2:-84536450	None:intergenic
ACAACGAGCTCTTTCTTGAT+AGG	0.331075	3.2:-84536452	None:intergenic
ACATATTTGGCTCACAAAAC+AGG	0.425458	3.2:+84539265	MS.gene012992:CDS
ACTTCTTTGTAAACAGGAGC+AGG	0.521856	3.2:-84536506	None:intergenic
AGAGAGTCGCCGGAAAAGAA+TGG	0.454260	3.2:+84536322	MS.gene012992:CDS
AGCATTGACTTGACAAAAGT+TGG	0.443741	3.2:-84536863	None:intergenic
AGGCATATTGGCGACACGAC+CGG	0.537317	3.2:-84536486	None:intergenic
AGTACAGGGATTATTCGAAG+CGG	0.715139	3.2:+84536762	MS.gene012992:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCTATACTACTCTCTA+TGG	+	chr3.2:84537563-84537582	MS.gene012992:intron	30.0%
AAAGATGAAATGGTGAATGT+GGG	-	chr3.2:84536550-84536569	None:intergenic	30.0%
AACATTCGTTGTAACTACTT+TGG	+	chr3.2:84537712-84537731	MS.gene012992:intron	30.0%
AAGCCAAAACAAATCTTTGT+AGG	+	chr3.2:84538103-84538122	MS.gene012992:intron	30.0%
AATGCTTCCATTGAGTAAAA+AGG	-	chr3.2:84537303-84537322	None:intergenic	30.0%
AATTTATTTGTACAAGGCTC+TGG	-	chr3.2:84539035-84539054	None:intergenic	30.0%
ACATTCGTTGTAACTACTTT+GGG	+	chr3.2:84537713-84537732	MS.gene012992:intron	30.0%
AGATGAATGTTATATGCATG+TGG	+	chr3.2:84539507-84539526	MS.gene012992:intron	30.0%
AGGTACTTGAAAAAGAGTAA+CGG	-	chr3.2:84537227-84537246	None:intergenic	30.0%
AGTGATGACTTTAATTGATG+AGG	+	chr3.2:84539222-84539241	MS.gene012992:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	84536296	84539877	84536296	ID=MS.gene012992
chr3.2	mRNA	84536296	84539877	84536296	ID=MS.gene012992.t1;Parent=MS.gene012992
chr3.2	exon	84536296	84536526	84536296	ID=MS.gene012992.t1.exon1;Parent=MS.gene012992.t1
chr3.2	CDS	84536296	84536526	84536296	ID=cds.MS.gene012992.t1;Parent=MS.gene012992.t1
chr3.2	exon	84536614	84536657	84536614	ID=MS.gene012992.t1.exon2;Parent=MS.gene012992.t1
chr3.2	CDS	84536614	84536657	84536614	ID=cds.MS.gene012992.t1;Parent=MS.gene012992.t1
chr3.2	exon	84536745	84536916	84536745	ID=MS.gene012992.t1.exon3;Parent=MS.gene012992.t1
chr3.2	CDS	84536745	84536916	84536745	ID=cds.MS.gene012992.t1;Parent=MS.gene012992.t1
chr3.2	exon	84539175	84539381	84539175	ID=MS.gene012992.t1.exon4;Parent=MS.gene012992.t1
chr3.2	CDS	84539175	84539381	84539175	ID=cds.MS.gene012992.t1;Parent=MS.gene012992.t1
chr3.2	exon	84539836	84539877	84539836	ID=MS.gene012992.t1.exon5;Parent=MS.gene012992.t1
chr3.2	CDS	84539836	84539877	84539836	ID=cds.MS.gene012992.t1;Parent=MS.gene012992.t1

Gene Sequence

>MS.gene012992

ATGGTGGCAAAAGCATCATCATACGAAGAGAGTCGCCGGAAAAGAATGGAAGAGAATCAAAAGAGAATGGAAGCTCTCAATCTTACCAAGCTCTCTCAATCACTTCACAAATCATCTTCCCCCATTTCAAAACCCTCACCTTCCAAACCTCGCACCCCTATCAAGAAAGAGCTCGTTGTTGTTCGAAGATCCGGTCGTGTCGCCAATATGCCTGCTCCTGTTTACAAAGAAGTCTGTAAACCAAACCCTAACCCACATTCACCATTTCATCTTTCTCTATTACTTTCTCTCTCTAACATTTTTTCATTTTTTTCACAGATTCTTATTGATTCCGTTAAAATACCTAGAAATAGAATTTCAAGGTTTGTTCTTTCTTCTGTGGAATCACATTTGTATTTTATTTTTTTATTTTTATTTTTATTTTAAATTTTTATATTTTTTCTGTGTAGATGTGGTGGATATGATAAGTACAGGGATTATTCGAAGCGGGTGTATGCGTCCGACGAAGCTAGAATGGAAGCAATGGAGAAGGCTGATAAGTTGCTCTCCGATTTAGATTCTGATCATCCAACTTTTGTCAAGTCAATGCTCCAATCTCATGTCACTGGTGGATTCTGGCTGGTATCATTTCTATTCTATTAAGCACTTTTTTTAATTTATATTGTGTGTTTTAGTTTTTTTGTTGATTAAAGTTCACTTTTTTATTACTGTGGATTTTGATTTCTGTTATGAAATGAAGTTTTGTATAAAGATGTTAAAAAAAGAGGCTTTTTTTGATTGCATAATGCACACATCTTTTCATTTTGTATGTATAAATGCTGGTTTTGTTATTGGTTTCAATGGTTTTCCATGGCTTGAACTCTGTTTATTAACTTAAGCTTATGCACTTTTACTGAATGGAAGCATTCTGATCTCTTTGCTAAATCAACCGTTACTCTTTTTCAAGTACCTTTAGTTATTGCTTTGAATGCTTTTCAATGGAAGTTGTTGAGGTAGCTTATGCCCCTTTTTACTCAATGGAAGCATTATCTCTTTGCTATTTACAAATGAACCGCTACAATCTTTCAAGTCCCCTTTATTCAATGGGAGCATTCTCTCTTTGCAATTTACAAATCAACCGTTACAATCTTTCAAGCCCCTTTCATAAAAATAAGATACTTCATTAAAATTAGCCATTAAAAGAGAGAATGTTAATTTTAAGCGTGATTTATAGCCCCTCTCCCCTTCCACCAGAAAAATTCATTACATTTTCTTACTTTTTATTTGAAAAACCTATACTACTCTCTATGGAGCGAAATAATTACAATTGAGCTTTCCAATGTCAATTTTCTTTCTTCACATTTTCAATATACCTGACTAGTGACTACTAACTTTGAGTATTTTATGATTCACTTTTCATAATATAAAATGAAGTGGAACATTCGTTGTAACTACTTTGGGAATTTGGTCTCCATTGTCTAATGTATGTTTTTTATCTGACAAAATTGTCTATTGTATGTTAGTATGGGTTTACAACTAGTTATTGTTGACATTAAGAATCATATACAGAAAAAATATGTTCAACAAAATCTTGTTTAAGGTTTACATGAATATTGATCAATAATGCACGCACAGTTGCTTGCTTATCGGTTATTGTTACAAATATTACCAGAAACCCACCTATATTAGATTATTTACTCTCAGTGCTCATCACTAGAGTTTTTTTTTTTTTTTTTTGTGTGTGTGTGTTGGAAACTCGGTATCTGGCCCAAGGACCGACTAATTCGAGGGGTCCAATCTCACCGTTCATTTGTGGGGGCCTCATTTAAAGCCAAAACAAATCTTTGTAGGAACTAACCCACCAAAATTGGCATTGGAGGGAATGAAAACCGAGACCTTGAGAGGAGCACACCCCAAGGTTTCAAGCTAACAGCACCAGGCCAACCCAAGTTGTAATTGTGACTGGCAAGCTGCAATAGTCATTGCAAATAATAGAACTTTTAATGATAATAACAGACATAATCGATTGAGAGATATAGTGTTATGTACTTGCTGAAAGATGTTACAATCTCAATTGATTAAGCAAAAACTAAGTCTTTGCGAAGAAATTTGATATGTGAAACTCAGAGTCAGACTTAAGTCTATAGCTCACATGGAAGAGCTTAGATAGAAAACACACCACAAAGGAAGCAAAGAATGCATGCACAAAAGTCGACATAGTTTCGCACCTATTTTAAGTCCATGGAAATGCTCTTCCTTGTGAGTTGATAGCTCACACGAAAGAGCTTAGATAGAACACACACCAGAAAGGAAGCAAAGAATGCACAAGAGTTGATGTATTTTCTATCTCAAATAAGATAACAATTATAACAATCCAACTCAAATTTTGTATCTCTTAACAAACTCAAGCACCCTCACTCAACAGTAACACACTCACTATTAGAGACTCCCTAGTCTAACCCAAGTAATCACACACACACACACACACACACACACGGGTTGGTACACCTCTGATGTACACCTATGTGTTTTCGTTTATAAAGTTTGTTTCACACTTGTATGTTATGTCTAATGTTTTATTATTAGTCTAAGTCTCGTTTAAGTTTAAAATATATCAGTTTTGACAAATTTAAATCTATATGGTATTATTTATTCCCAACTATTATATATGTTATGTTGAGGGTGTTTTCACAACTTGTGCGAATAAAATTATGTCATTCTGGCAGAGATTAGTTACTGCTAAAGGGCGTAGATTAGCCAGAGCCTTGTACAAATAAATTAAATTATTCCTTTCAATTCAATACAACTAGCAAACAACTAACTTTCAAATTAAATTATATATCTTTGCATACAACTACAATTTATAATTGGTTAATCATTTTGGCATGCCTCAACAACAGGGCCTTCCAAATCATTTCTGCAGGAAAAACCTTCCAAAACGGGACGAAGTGATGACTTTAATTGATGAGGATGGGGATGAGTCTCCAACTACATATTTGGCTCACAAAACAGGACTTAGTGCTGGATGGAGAGGTTTCGCTATTGCTCATAACCTTGTTGATGGGGATGCTTTAATTTTTGAGTTAGTTAAACGCATTGCATTCAAGGTGATTAATTTTTGATTGTTTGTTCATTCATGCCTTGGTGTTTAACACATCTACCATATTTAATCGTGCTATATTCCTTGGTATTCAAAAGAACATTCATGAGTGTTAAGAAAATAAGAAAAAGAAGATGAATGTTATATGCATGTGGCTAATAATGGAGCTCTTGACACCCTTTTTCAATACTCCTATTTATAATACATGTTATCATTTTTAAGTCCATGTGCTGTGTGCTGTTCTAATTTACACCATTATATTTATTTCAATGTGGAGGGTTGTTAAATTTTAGCACTTGTACAATTCTTGTTAAATATAATTGATCAAAATAGAAAATACACATTAAAATACTACTGATATTTATCTAGGTTTGCTGAAACTTGAATTCCTATAGTTAGCAATCTCATTATTCCACATATGTTAATCAATGAATAGTGTGGTTGCTAAAATTTTCTTTCAGGTGTACATTATTAGAGTGAATGAGGGTAAACAGGACGATTGA

Protein sequence

>MS.gene012992.t1

MVAKASSYEESRRKRMEENQKRMEALNLTKLSQSLHKSSSPISKPSPSKPRTPIKKELVVVRRSGRVANMPAPVYKEILIDSVKIPRNRISRCGGYDKYRDYSKRVYASDEARMEAMEKADKLLSDLDSDHPTFVKSMLQSHVTGGFWLGLPNHFCRKNLPKRDEVMTLIDEDGDESPTTYLAHKTGLSAGWRGFAIAHNLVDGDALIFELVKRIAFKVYIIRVNEGKQDD