Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013045.t1 | XP_004501619.1 | 82.6 | 259 | 28 | 3 | 2 | 249 | 19 | 271 | 8.90E-63 | 250.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013045.t1 | Q9SB61 | 48.6 | 245 | 87 | 2 | 5 | 249 | 15 | 220 | 6.1e-44 | 179.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013045.t1 | A0A1S2YAX3 | 82.6 | 259 | 28 | 3 | 2 | 249 | 19 | 271 | 6.4e-63 | 250.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013045.t1 | TF | zf-HD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013045.t1 | MTR_3g100650 | 95.219 | 251 | 5 | 2 | 1 | 249 | 29 | 274 | 4.27e-177 | 488 |
| MS.gene013045.t1 | MTR_5g065440 | 65.625 | 256 | 69 | 5 | 6 | 249 | 20 | 268 | 1.84e-99 | 291 |
| MS.gene013045.t1 | MTR_5g032600 | 54.167 | 216 | 70 | 7 | 46 | 249 | 74 | 272 | 5.94e-62 | 196 |
| MS.gene013045.t1 | MTR_4g134580 | 43.515 | 239 | 92 | 6 | 49 | 248 | 112 | 346 | 1.53e-55 | 182 |
| MS.gene013045.t1 | MTR_1g077020 | 44.554 | 202 | 91 | 3 | 47 | 248 | 6 | 186 | 4.75e-53 | 170 |
| MS.gene013045.t1 | MTR_5g020510 | 43.333 | 210 | 105 | 3 | 45 | 248 | 94 | 295 | 5.09e-48 | 160 |
| MS.gene013045.t1 | MTR_2g076780 | 43.541 | 209 | 99 | 5 | 50 | 248 | 37 | 236 | 7.76e-48 | 158 |
| MS.gene013045.t1 | MTR_8g069080 | 42.788 | 208 | 103 | 3 | 49 | 248 | 68 | 267 | 5.93e-47 | 157 |
| MS.gene013045.t1 | MTR_7g010300 | 41.121 | 214 | 98 | 5 | 47 | 248 | 85 | 282 | 4.22e-46 | 157 |
| MS.gene013045.t1 | MTR_6g012280 | 41.463 | 205 | 103 | 5 | 50 | 248 | 91 | 284 | 6.32e-39 | 138 |
| MS.gene013045.t1 | MTR_8g069380 | 51.163 | 86 | 41 | 1 | 164 | 249 | 31 | 115 | 1.58e-21 | 86.7 |
| MS.gene013045.t1 | MTR_3g039810 | 61.290 | 62 | 24 | 0 | 48 | 109 | 18 | 79 | 6.70e-21 | 84.3 |
| MS.gene013045.t1 | MTR_8g051480 | 54.667 | 75 | 33 | 1 | 174 | 248 | 55 | 128 | 7.43e-21 | 85.5 |
| MS.gene013045.t1 | MTR_8g442330 | 34.756 | 164 | 68 | 5 | 60 | 223 | 15 | 139 | 2.63e-20 | 84.3 |
| MS.gene013045.t1 | MTR_7g070643 | 69.492 | 59 | 15 | 1 | 30 | 88 | 65 | 120 | 1.28e-19 | 84.0 |
| MS.gene013045.t1 | MTR_8g467340 | 53.968 | 63 | 29 | 0 | 186 | 248 | 271 | 333 | 1.78e-18 | 84.0 |
| MS.gene013045.t1 | MTR_8g467340 | 56.364 | 55 | 22 | 1 | 47 | 99 | 61 | 115 | 4.74e-13 | 68.2 |
| MS.gene013045.t1 | MTR_6g080300 | 80.952 | 42 | 8 | 0 | 47 | 88 | 51 | 92 | 6.52e-18 | 76.6 |
| MS.gene013045.t1 | MTR_6g073013 | 55.000 | 60 | 26 | 1 | 186 | 244 | 101 | 160 | 6.18e-17 | 76.6 |
| MS.gene013045.t1 | MTR_6g073013 | 52.000 | 50 | 23 | 1 | 50 | 98 | 19 | 68 | 8.33e-11 | 59.7 |
| MS.gene013045.t1 | MTR_6g012220 | 55.769 | 52 | 19 | 1 | 47 | 98 | 18 | 65 | 4.08e-13 | 63.5 |
| MS.gene013045.t1 | MTR_2g007810 | 93.103 | 29 | 2 | 0 | 60 | 88 | 19 | 47 | 1.96e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013045.t1 | AT4G24660 | 53.202 | 203 | 65 | 5 | 48 | 249 | 47 | 220 | 2.76e-66 | 205 |
| MS.gene013045.t1 | AT4G24660 | 52.261 | 199 | 65 | 5 | 48 | 245 | 47 | 216 | 4.67e-63 | 197 |
| MS.gene013045.t1 | AT2G02540 | 38.314 | 261 | 130 | 6 | 7 | 248 | 36 | 284 | 5.39e-60 | 192 |
| MS.gene013045.t1 | AT2G02540 | 38.314 | 261 | 130 | 6 | 7 | 248 | 36 | 284 | 5.39e-60 | 192 |
| MS.gene013045.t1 | AT1G14440 | 45.366 | 205 | 96 | 4 | 48 | 248 | 88 | 280 | 1.96e-54 | 177 |
| MS.gene013045.t1 | AT1G14440 | 45.366 | 205 | 96 | 4 | 48 | 248 | 88 | 280 | 1.96e-54 | 177 |
| MS.gene013045.t1 | AT5G65410 | 45.536 | 224 | 74 | 5 | 40 | 249 | 65 | 254 | 6.51e-51 | 167 |
| MS.gene013045.t1 | AT2G18350 | 47.291 | 203 | 87 | 4 | 46 | 248 | 78 | 260 | 2.51e-50 | 166 |
| MS.gene013045.t1 | AT3G50890 | 43.216 | 199 | 98 | 3 | 49 | 247 | 59 | 242 | 1.92e-46 | 155 |
| MS.gene013045.t1 | AT1G75240 | 41.126 | 231 | 108 | 2 | 47 | 249 | 73 | 303 | 4.63e-46 | 156 |
| MS.gene013045.t1 | AT5G15210 | 38.863 | 211 | 100 | 5 | 40 | 242 | 46 | 235 | 5.49e-38 | 134 |
| MS.gene013045.t1 | AT1G69600 | 40.291 | 206 | 96 | 7 | 48 | 245 | 29 | 215 | 7.36e-37 | 130 |
| MS.gene013045.t1 | AT3G28920 | 33.333 | 231 | 92 | 4 | 48 | 245 | 50 | 251 | 4.61e-34 | 125 |
| MS.gene013045.t1 | AT5G60480 | 37.931 | 203 | 88 | 4 | 47 | 243 | 34 | 204 | 1.32e-32 | 119 |
| MS.gene013045.t1 | AT5G42780 | 31.553 | 206 | 100 | 5 | 50 | 245 | 64 | 238 | 1.36e-24 | 98.6 |
| MS.gene013045.t1 | AT1G74660 | 69.355 | 62 | 19 | 0 | 48 | 109 | 37 | 98 | 1.36e-24 | 94.4 |
| MS.gene013045.t1 | AT1G74660 | 72.414 | 58 | 16 | 0 | 48 | 105 | 37 | 94 | 2.50e-24 | 93.6 |
| MS.gene013045.t1 | AT3G28917 | 66.667 | 60 | 19 | 1 | 47 | 105 | 30 | 89 | 7.90e-22 | 87.0 |
| MS.gene013045.t1 | AT1G18835 | 60.317 | 63 | 22 | 1 | 47 | 109 | 23 | 82 | 1.16e-19 | 81.3 |
| MS.gene013045.t1 | AT5G39760 | 53.846 | 65 | 30 | 0 | 184 | 248 | 198 | 262 | 2.67e-19 | 85.9 |
| MS.gene013045.t1 | AT1G14687 | 26.866 | 201 | 104 | 7 | 46 | 242 | 3 | 164 | 5.14e-14 | 68.6 |
Find 82 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCATTTGCGGAGAAAAT+TGG | 0.226300 | 3.3:-83536110 | MS.gene013045:CDS |
| TAACATGCCACCGGCGTAAC+AGG | 0.280829 | 3.3:+83536704 | None:intergenic |
| TTTCTTTGCGGTGAAAGTTC+CGG | 0.342082 | 3.3:+83536438 | None:intergenic |
| GGTGGTAGTGGAGGAGGAAG+TGG | 0.392563 | 3.3:-83536185 | MS.gene013045:CDS |
| TATCAAGAGACATGTGCTTA+AGG | 0.397983 | 3.3:-83536030 | MS.gene013045:CDS |
| AGAGACATGTGCTTAAGGTT+TGG | 0.408486 | 3.3:-83536025 | MS.gene013045:CDS |
| GGATAAGATGCTTGCATTTG+CGG | 0.410009 | 3.3:-83536120 | MS.gene013045:CDS |
| CCACCACCACCGCTGCTGCT+TGG | 0.417998 | 3.3:+83536206 | None:intergenic |
| AGCAGCAGCGGTGGTGGTGG+TGG | 0.434714 | 3.3:-83536203 | MS.gene013045:CDS |
| AAAATTCACACAGGAACAAA+AGG | 0.449497 | 3.3:-83536141 | MS.gene013045:CDS |
| AACGGACGATGTTGTGATAT+CGG | 0.449782 | 3.3:+83536290 | None:intergenic |
| TTGTATCTGACCGTTCCTGC+TGG | 0.450197 | 3.3:+83536584 | None:intergenic |
| CACAATAACAAGCACACTCT+TGG | 0.453753 | 3.3:-83535999 | MS.gene013045:CDS |
| ATTGATGGTGGTGGTGTTGA+GGG | 0.453905 | 3.3:+83536381 | None:intergenic |
| GGTGGTGGTGGTAGTGGAGG+AGG | 0.457454 | 3.3:-83536191 | MS.gene013045:CDS |
| TTGTGATATCGGTGGAGTTA+CGG | 0.462629 | 3.3:+83536301 | None:intergenic |
| ATTCACCGTCGATTTCTTTG+CGG | 0.470970 | 3.3:+83536426 | None:intergenic |
| CCAAGCAGCAGCGGTGGTGG+TGG | 0.471348 | 3.3:-83536206 | MS.gene013045:CDS |
| TTGCATTTGCGGAGAAAATT+GGG | 0.474261 | 3.3:-83536109 | MS.gene013045:CDS |
| GTTGAGGGTGATGAGACCGC+TGG | 0.475704 | 3.3:+83536396 | None:intergenic |
| TGGTGGAAACCAGGCGGAGG+AGG | 0.482300 | 3.3:+83536329 | None:intergenic |
| CGCTTGGAAACTCAGGAGTT+AGG | 0.485005 | 3.3:-83536676 | MS.gene013045:CDS |
| AATTGATGGTGGTGGTGTTG+AGG | 0.486125 | 3.3:+83536380 | None:intergenic |
| AACGCTGCACGGTGGTAGTA+AGG | 0.486813 | 3.3:+83536353 | None:intergenic |
| TCCACCAGCTGCATCGAGTA+GGG | 0.488823 | 3.3:-83536261 | MS.gene013045:CDS |
| AATGGGGTTCCCTGTTACGC+CGG | 0.489920 | 3.3:-83536714 | MS.gene013045:CDS |
| GCAGCGTTACCTCCTCCGCC+TGG | 0.493199 | 3.3:-83536338 | MS.gene013045:CDS |
| TTCCAGTGTTCCTTCTTCTC+CGG | 0.499051 | 3.3:+83536490 | None:intergenic |
| GAGGAAGTGGAACGAAGAAA+AGG | 0.501558 | 3.3:-83536172 | MS.gene013045:CDS |
| ACAGGCGGTGGTGTCAAAAG+TGG | 0.503495 | 3.3:-83536608 | MS.gene013045:CDS |
| AATCCAAGCAGCAGCGGTGG+TGG | 0.510288 | 3.3:-83536209 | MS.gene013045:CDS |
| TTGAGGGTGATGAGACCGCT+GGG | 0.515445 | 3.3:+83536397 | None:intergenic |
| GGTGGAATCGGTTCAGCGGA+CGG | 0.518412 | 3.3:-83536641 | MS.gene013045:CDS |
| GGTGTCAAAAGTGGGCCAGC+AGG | 0.527350 | 3.3:-83536599 | MS.gene013045:CDS |
| TGGTGGTGGAAACCAGGCGG+AGG | 0.539701 | 3.3:+83536326 | None:intergenic |
| GGTAGTAAGGTGATAATTGA+TGG | 0.540087 | 3.3:+83536366 | None:intergenic |
| GTGGAGTTACGGAGTGGTGG+TGG | 0.542600 | 3.3:+83536312 | None:intergenic |
| AGAAGAAGGAACACTGGAAG+CGG | 0.543572 | 3.3:-83536486 | MS.gene013045:CDS |
| GTGCTGCTTGTAACTGTCAC+CGG | 0.544839 | 3.3:-83536457 | MS.gene013045:CDS |
| CAAAAGTGGGCCAGCAGGAA+CGG | 0.546267 | 3.3:-83536594 | MS.gene013045:CDS |
| GGGGTTCCCTGTTACGCCGG+TGG | 0.551765 | 3.3:-83536711 | MS.gene013045:CDS |
| GGAGGAGCAGCCACAGGCGG+TGG | 0.554790 | 3.3:-83536620 | MS.gene013045:CDS |
| GTGGCATGTTACGACTCGCT+TGG | 0.557648 | 3.3:-83536692 | MS.gene013045:CDS |
| AAGAATCACGCCGTCAGCAT+AGG | 0.558884 | 3.3:-83536551 | MS.gene013045:CDS |
| ACGGAGTGGTGGTGGAAACC+AGG | 0.562207 | 3.3:+83536320 | None:intergenic |
| AATCCCCTACTCGATGCAGC+TGG | 0.564604 | 3.3:+83536257 | None:intergenic |
| GCGGACGGAGGAGCAGCCAC+AGG | 0.565208 | 3.3:-83536626 | MS.gene013045:CDS |
| TACGACTCGCTTGGAAACTC+AGG | 0.569322 | 3.3:-83536683 | MS.gene013045:CDS |
| AATCACGCCGTCAGCATAGG+TGG | 0.574956 | 3.3:-83536548 | MS.gene013045:CDS |
| ATAGGTGGTCACGCCGTGGA+TGG | 0.576462 | 3.3:-83536533 | MS.gene013045:CDS |
| CCCCTACTCGATGCAGCTGG+TGG | 0.577449 | 3.3:+83536260 | None:intergenic |
| CAGGCGGTGGTGTCAAAAGT+GGG | 0.580393 | 3.3:-83536607 | MS.gene013045:CDS |
| AATTGGGTGGAGAATTCAGA+AGG | 0.584858 | 3.3:-83536093 | MS.gene013045:CDS |
| AACATGCCACCGGCGTAACA+GGG | 0.586523 | 3.3:+83536705 | None:intergenic |
| TCAAATCCAAGCAGCAGCGG+TGG | 0.591349 | 3.3:-83536212 | MS.gene013045:CDS |
| AGCGAGTCGTAACATGCCAC+CGG | 0.591718 | 3.3:+83536695 | None:intergenic |
| AGAATTCAGAAGGAAGATGA+AGG | 0.605493 | 3.3:-83536083 | MS.gene013045:CDS |
| GCAGCTGGTGGAAGAGCCAA+CGG | 0.605589 | 3.3:+83536272 | None:intergenic |
| GACGGAGGAGCAGCCACAGG+CGG | 0.606719 | 3.3:-83536623 | MS.gene013045:CDS |
| CATTTGCGGAGAAAATTGGG+TGG | 0.607411 | 3.3:-83536106 | MS.gene013045:CDS |
| GCGGAGGAGGTAACGCTGCA+CGG | 0.609223 | 3.3:+83536342 | None:intergenic |
| TCGGTGGAGTTACGGAGTGG+TGG | 0.614261 | 3.3:+83536309 | None:intergenic |
| GGCGTGACCACCTATGCTGA+CGG | 0.619665 | 3.3:+83536541 | None:intergenic |
| CCACCAGCTGCATCGAGTAG+GGG | 0.624461 | 3.3:-83536260 | MS.gene013045:CDS |
| TTCCACCAGCTGCATCGAGT+AGG | 0.625338 | 3.3:-83536262 | MS.gene013045:CDS |
| CAGCATAGGTGGTCACGCCG+TGG | 0.632841 | 3.3:-83536537 | MS.gene013045:CDS |
| TGGCGGTGGAATCGGTTCAG+CGG | 0.633285 | 3.3:-83536645 | MS.gene013045:CDS |
| GATATCACAACATCGTCCGT+TGG | 0.638979 | 3.3:-83536288 | MS.gene013045:CDS |
| TGCCGGAGAAGAAGGAACAC+TGG | 0.644421 | 3.3:-83536492 | MS.gene013045:CDS |
| GGACGATGTTGTGATATCGG+TGG | 0.659157 | 3.3:+83536293 | None:intergenic |
| AGTAAGGTGATAATTGATGG+TGG | 0.668303 | 3.3:+83536369 | None:intergenic |
| AAGGTGATAATTGATGGTGG+TGG | 0.673505 | 3.3:+83536372 | None:intergenic |
| GAGTGGTGGTGGAAACCAGG+CGG | 0.674377 | 3.3:+83536323 | None:intergenic |
| GGAATCGGTTCAGCGGACGG+AGG | 0.678169 | 3.3:-83536638 | MS.gene013045:CDS |
| GTTTAGAACAAAATTCACAC+AGG | 0.682835 | 3.3:-83536150 | MS.gene013045:CDS |
| AAACTCGCAACATCCATCCA+CGG | 0.687116 | 3.3:+83536520 | None:intergenic |
| GTGTCAAATCCAAGCAGCAG+CGG | 0.696717 | 3.3:-83536215 | MS.gene013045:CDS |
| TTTCACCGCAAAGAAATCGA+CGG | 0.699703 | 3.3:-83536431 | MS.gene013045:CDS |
| ATATCGGTGGAGTTACGGAG+TGG | 0.773672 | 3.3:+83536306 | None:intergenic |
| ACGGTGAATTCACTCCCCAG+CGG | 0.785774 | 3.3:-83536412 | MS.gene013045:CDS |
| GAGGAGGTAACGCTGCACGG+TGG | 0.795380 | 3.3:+83536345 | None:intergenic |
| TGAGGGTGATGAGACCGCTG+GGG | 0.809094 | 3.3:+83536398 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AAAATTCACACAGGAACAAA+AGG | - | chr3.3:83536558-83536577 | MS.gene013045:CDS | 30.0% | |
| ! | GTTTAGAACAAAATTCACAC+AGG | - | chr3.3:83536549-83536568 | MS.gene013045:CDS | 30.0% |
| AGAATTCAGAAGGAAGATGA+AGG | - | chr3.3:83536616-83536635 | MS.gene013045:CDS | 35.0% | |
| AGTAAGGTGATAATTGATGG+TGG | + | chr3.3:83536333-83536352 | None:intergenic | 35.0% | |
| GGTAGTAAGGTGATAATTGA+TGG | + | chr3.3:83536336-83536355 | None:intergenic | 35.0% | |
| TATCAAGAGACATGTGCTTA+AGG | - | chr3.3:83536669-83536688 | MS.gene013045:CDS | 35.0% | |
| TTGCATTTGCGGAGAAAATT+GGG | - | chr3.3:83536590-83536609 | MS.gene013045:CDS | 35.0% | |
| AACGGACGATGTTGTGATAT+CGG | + | chr3.3:83536412-83536431 | None:intergenic | 40.0% | |
| AATTGGGTGGAGAATTCAGA+AGG | - | chr3.3:83536606-83536625 | MS.gene013045:CDS | 40.0% | |
| AGAGACATGTGCTTAAGGTT+TGG | - | chr3.3:83536674-83536693 | MS.gene013045:CDS | 40.0% | |
| CACAATAACAAGCACACTCT+TGG | - | chr3.3:83536700-83536719 | MS.gene013045:CDS | 40.0% | |
| CTTGCATTTGCGGAGAAAAT+TGG | - | chr3.3:83536589-83536608 | MS.gene013045:CDS | 40.0% | |
| GGATAAGATGCTTGCATTTG+CGG | - | chr3.3:83536579-83536598 | MS.gene013045:CDS | 40.0% | |
| TCAGGAGTTAGGTCCAAAAA+TGG | - | chr3.3:83536034-83536053 | MS.gene013045:CDS | 40.0% | |
| TTGTGATATCGGTGGAGTTA+CGG | + | chr3.3:83536401-83536420 | None:intergenic | 40.0% | |
| TTTCACCGCAAAGAAATCGA+CGG | - | chr3.3:83536268-83536287 | MS.gene013045:CDS | 40.0% | |
| TTTCTTTGCGGTGAAAGTTC+CGG | + | chr3.3:83536264-83536283 | None:intergenic | 40.0% | |
| !! | AAGGTGATAATTGATGGTGG+TGG | + | chr3.3:83536330-83536349 | None:intergenic | 40.0% |
| !! | ATTCACCGTCGATTTCTTTG+CGG | + | chr3.3:83536276-83536295 | None:intergenic | 40.0% |
| AAACTCGCAACATCCATCCA+CGG | + | chr3.3:83536182-83536201 | None:intergenic | 45.0% | |
| AGAAGAAGGAACACTGGAAG+CGG | - | chr3.3:83536213-83536232 | MS.gene013045:CDS | 45.0% | |
| CATTTGCGGAGAAAATTGGG+TGG | - | chr3.3:83536593-83536612 | MS.gene013045:CDS | 45.0% | |
| GAGGAAGTGGAACGAAGAAA+AGG | - | chr3.3:83536527-83536546 | MS.gene013045:CDS | 45.0% | |
| GATATCACAACATCGTCCGT+TGG | - | chr3.3:83536411-83536430 | MS.gene013045:CDS | 45.0% | |
| GGAGTTAGGTCCAAAAATGG+CGG | - | chr3.3:83536037-83536056 | MS.gene013045:CDS | 45.0% | |
| TCCAAAAATGGCGGTGGAAT+CGG | - | chr3.3:83536046-83536065 | MS.gene013045:CDS | 45.0% | |
| TTCCAGTGTTCCTTCTTCTC+CGG | + | chr3.3:83536212-83536231 | None:intergenic | 45.0% | |
| !! | AATTGATGGTGGTGGTGTTG+AGG | + | chr3.3:83536322-83536341 | None:intergenic | 45.0% |
| !! | ATTGATGGTGGTGGTGTTGA+GGG | + | chr3.3:83536321-83536340 | None:intergenic | 45.0% |
| !!! | TGTTGCGAGTTTTTAGCTGC+CGG | - | chr3.3:83536190-83536209 | MS.gene013045:CDS | 45.0% |
| !!! | TTTTTAGCTGCCGGAGAAGA+AGG | - | chr3.3:83536199-83536218 | MS.gene013045:CDS | 45.0% |
| AAGAATCACGCCGTCAGCAT+AGG | - | chr3.3:83536148-83536167 | MS.gene013045:CDS | 50.0% | |
| ATATCGGTGGAGTTACGGAG+TGG | + | chr3.3:83536396-83536415 | None:intergenic | 50.0% | |
| CGCTTGGAAACTCAGGAGTT+AGG | - | chr3.3:83536023-83536042 | MS.gene013045:CDS | 50.0% | |
| GGACGATGTTGTGATATCGG+TGG | + | chr3.3:83536409-83536428 | None:intergenic | 50.0% | |
| GTGTCAAATCCAAGCAGCAG+CGG | - | chr3.3:83536484-83536503 | MS.gene013045:CDS | 50.0% | |
| GTTAGGTCCAAAAATGGCGG+TGG | - | chr3.3:83536040-83536059 | MS.gene013045:CDS | 50.0% | |
| TACGACTCGCTTGGAAACTC+AGG | - | chr3.3:83536016-83536035 | MS.gene013045:CDS | 50.0% | |
| TTGTATCTGACCGTTCCTGC+TGG | + | chr3.3:83536118-83536137 | None:intergenic | 50.0% | |
| !! | ACCGATTCCACCGCCATTTT+TGG | + | chr3.3:83536050-83536069 | None:intergenic | 50.0% |
| !! | GTGCTGCTTGTAACTGTCAC+CGG | - | chr3.3:83536242-83536261 | MS.gene013045:CDS | 50.0% |
| AACATGCCACCGGCGTAACA+GGG | + | chr3.3:83535997-83536016 | None:intergenic | 55.0% | |
| AACGCTGCACGGTGGTAGTA+AGG | + | chr3.3:83536349-83536368 | None:intergenic | 55.0% | |
| AATCACGCCGTCAGCATAGG+TGG | - | chr3.3:83536151-83536170 | MS.gene013045:CDS | 55.0% | |
| AATCCCCTACTCGATGCAGC+TGG | + | chr3.3:83536445-83536464 | None:intergenic | 55.0% | |
| ACGGTGAATTCACTCCCCAG+CGG | - | chr3.3:83536287-83536306 | MS.gene013045:CDS | 55.0% | |
| AGCGAGTCGTAACATGCCAC+CGG | + | chr3.3:83536007-83536026 | None:intergenic | 55.0% | |
| CAAAAGTGGGCCAGCAGGAA+CGG | - | chr3.3:83536105-83536124 | MS.gene013045:CDS | 55.0% | |
| GTGGCATGTTACGACTCGCT+TGG | - | chr3.3:83536007-83536026 | MS.gene013045:CDS | 55.0% | |
| TAACATGCCACCGGCGTAAC+AGG | + | chr3.3:83535998-83536017 | None:intergenic | 55.0% | |
| TCAAATCCAAGCAGCAGCGG+TGG | - | chr3.3:83536487-83536506 | MS.gene013045:CDS | 55.0% | |
| TCCACCAGCTGCATCGAGTA+GGG | - | chr3.3:83536438-83536457 | MS.gene013045:CDS | 55.0% | |
| TGCCGGAGAAGAAGGAACAC+TGG | - | chr3.3:83536207-83536226 | MS.gene013045:CDS | 55.0% | |
| TTCCACCAGCTGCATCGAGT+AGG | - | chr3.3:83536437-83536456 | MS.gene013045:CDS | 55.0% | |
| TTGAGGGTGATGAGACCGCT+GGG | + | chr3.3:83536305-83536324 | None:intergenic | 55.0% | |
| ! | ACAGGCGGTGGTGTCAAAAG+TGG | - | chr3.3:83536091-83536110 | MS.gene013045:CDS | 55.0% |
| ! | ACTTTTGACACCACCGCCTG+TGG | + | chr3.3:83536092-83536111 | None:intergenic | 55.0% |
| ! | CAGGCGGTGGTGTCAAAAGT+GGG | - | chr3.3:83536092-83536111 | MS.gene013045:CDS | 55.0% |
| AATCCAAGCAGCAGCGGTGG+TGG | - | chr3.3:83536490-83536509 | MS.gene013045:CDS | 60.0% | |
| ATAGGTGGTCACGCCGTGGA+TGG | - | chr3.3:83536166-83536185 | MS.gene013045:CDS | 60.0% | |
| CCACCAGCTGCATCGAGTAG+GGG | - | chr3.3:83536439-83536458 | MS.gene013045:CDS | 60.0% | |
| GCAGCTGGTGGAAGAGCCAA+CGG | + | chr3.3:83536430-83536449 | None:intergenic | 60.0% | |
| GGCGTGACCACCTATGCTGA+CGG | + | chr3.3:83536161-83536180 | None:intergenic | 60.0% | |
| GGTGTCAAAAGTGGGCCAGC+AGG | - | chr3.3:83536100-83536119 | MS.gene013045:CDS | 60.0% | |
| GTGGAGTTACGGAGTGGTGG+TGG | + | chr3.3:83536390-83536409 | None:intergenic | 60.0% | |
| GTTGAGGGTGATGAGACCGC+TGG | + | chr3.3:83536306-83536325 | None:intergenic | 60.0% | |
| TCGGTGGAGTTACGGAGTGG+TGG | + | chr3.3:83536393-83536412 | None:intergenic | 60.0% | |
| TGAGGGTGATGAGACCGCTG+GGG | + | chr3.3:83536304-83536323 | None:intergenic | 60.0% | |
| ! | GGTGGAATCGGTTCAGCGGA+CGG | - | chr3.3:83536058-83536077 | MS.gene013045:CDS | 60.0% |
| ! | TGGCGGTGGAATCGGTTCAG+CGG | - | chr3.3:83536054-83536073 | MS.gene013045:CDS | 60.0% |
| !! | ACGGAGTGGTGGTGGAAACC+AGG | + | chr3.3:83536382-83536401 | None:intergenic | 60.0% |
| !! | GAGTGGTGGTGGAAACCAGG+CGG | + | chr3.3:83536379-83536398 | None:intergenic | 60.0% |
| !! | GGTGGTAGTGGAGGAGGAAG+TGG | - | chr3.3:83536514-83536533 | MS.gene013045:CDS | 60.0% |
| CAGCATAGGTGGTCACGCCG+TGG | - | chr3.3:83536162-83536181 | MS.gene013045:CDS | 65.0% | |
| CCCCTACTCGATGCAGCTGG+TGG | + | chr3.3:83536442-83536461 | None:intergenic | 65.0% | |
| GAGGAGGTAACGCTGCACGG+TGG | + | chr3.3:83536357-83536376 | None:intergenic | 65.0% | |
| GCGGAGGAGGTAACGCTGCA+CGG | + | chr3.3:83536360-83536379 | None:intergenic | 65.0% | |
| TGGTGGAAACCAGGCGGAGG+AGG | + | chr3.3:83536373-83536392 | None:intergenic | 65.0% | |
| ! | GGAATCGGTTCAGCGGACGG+AGG | - | chr3.3:83536061-83536080 | MS.gene013045:CDS | 65.0% |
| !! | AGCGGTGGTGGTGGTGGTAG+TGG | - | chr3.3:83536502-83536521 | MS.gene013045:CDS | 65.0% |
| !! | GGTGGTGGTGGTAGTGGAGG+AGG | - | chr3.3:83536508-83536527 | MS.gene013045:CDS | 65.0% |
| !! | GGTGGTGGTGGTGGTAGTGG+AGG | - | chr3.3:83536505-83536524 | MS.gene013045:CDS | 65.0% |
| !! | TGGTGGTGGAAACCAGGCGG+AGG | + | chr3.3:83536376-83536395 | None:intergenic | 65.0% |
| CCACCACCACCGCTGCTGCT+TGG | + | chr3.3:83536496-83536515 | None:intergenic | 70.0% | |
| GACGGAGGAGCAGCCACAGG+CGG | - | chr3.3:83536076-83536095 | MS.gene013045:CDS | 70.0% | |
| GCAGCGTTACCTCCTCCGCC+TGG | - | chr3.3:83536361-83536380 | MS.gene013045:CDS | 70.0% | |
| GGGGTTCCCTGTTACGCCGG+TGG | - | chr3.3:83535988-83536007 | MS.gene013045:CDS | 70.0% | |
| ! | CCAAGCAGCAGCGGTGGTGG+TGG | - | chr3.3:83536493-83536512 | MS.gene013045:CDS | 70.0% |
| !! | AGCAGCAGCGGTGGTGGTGG+TGG | - | chr3.3:83536496-83536515 | MS.gene013045:CDS | 70.0% |
| GCGGACGGAGGAGCAGCCAC+AGG | - | chr3.3:83536073-83536092 | MS.gene013045:CDS | 75.0% | |
| GGAGGAGCAGCCACAGGCGG+TGG | - | chr3.3:83536079-83536098 | MS.gene013045:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 83535986 | 83536735 | 83535986 | ID=MS.gene013045 |
| chr3.3 | mRNA | 83535986 | 83536735 | 83535986 | ID=MS.gene013045.t1;Parent=MS.gene013045 |
| chr3.3 | exon | 83535986 | 83536735 | 83535986 | ID=MS.gene013045.t1.exon1;Parent=MS.gene013045.t1 |
| chr3.3 | CDS | 83535986 | 83536735 | 83535986 | ID=cds.MS.gene013045.t1;Parent=MS.gene013045.t1 |
| Gene Sequence |
| Protein sequence |
