Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013095.t1 | XP_003602887.2 | 95.8 | 359 | 14 | 1 | 1 | 358 | 1 | 359 | 9.50E-167 | 596.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013095.t1 | Q10F25 | 49.3 | 229 | 101 | 5 | 68 | 288 | 80 | 301 | 8.5e-47 | 189.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013095.t1 | G7J4K2 | 95.8 | 359 | 14 | 1 | 1 | 358 | 1 | 359 | 6.9e-167 | 596.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene013095.t1 | TF | C2C2-GATA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013095.t1 | MTR_3g100040 | 96.657 | 359 | 11 | 1 | 1 | 358 | 1 | 359 | 0.0 | 709 |
MS.gene013095.t1 | MTR_3g100040 | 96.078 | 255 | 10 | 0 | 104 | 358 | 1 | 255 | 0.0 | 508 |
MS.gene013095.t1 | MTR_4g093730 | 44.860 | 321 | 131 | 8 | 54 | 358 | 29 | 319 | 1.92e-77 | 241 |
MS.gene013095.t1 | MTR_5g066510 | 48.000 | 250 | 115 | 7 | 12 | 252 | 14 | 257 | 4.27e-62 | 200 |
MS.gene013095.t1 | MTR_3g100050 | 52.821 | 195 | 78 | 5 | 68 | 258 | 71 | 255 | 1.19e-57 | 189 |
MS.gene013095.t1 | MTR_3g060200 | 57.534 | 146 | 57 | 3 | 162 | 304 | 10 | 153 | 2.17e-45 | 158 |
MS.gene013095.t1 | MTR_3g060200 | 53.614 | 166 | 55 | 3 | 162 | 306 | 10 | 174 | 4.04e-44 | 156 |
MS.gene013095.t1 | MTR_3g060200 | 53.614 | 166 | 55 | 3 | 162 | 306 | 10 | 174 | 5.22e-44 | 157 |
MS.gene013095.t1 | MTR_3g060200 | 53.614 | 166 | 55 | 3 | 162 | 306 | 10 | 174 | 3.94e-43 | 157 |
MS.gene013095.t1 | MTR_5g066510 | 43.655 | 197 | 98 | 6 | 4 | 194 | 10 | 199 | 2.01e-34 | 125 |
MS.gene013095.t1 | MTR_4g008090 | 50.000 | 74 | 37 | 0 | 86 | 159 | 11 | 84 | 1.88e-16 | 75.1 |
MS.gene013095.t1 | MTR_4g008070 | 46.914 | 81 | 34 | 3 | 162 | 235 | 1 | 79 | 1.04e-14 | 69.7 |
MS.gene013095.t1 | MTR_3g037390 | 57.143 | 49 | 21 | 0 | 122 | 170 | 386 | 434 | 7.39e-12 | 66.6 |
MS.gene013095.t1 | MTR_3g037390 | 57.143 | 49 | 21 | 0 | 122 | 170 | 490 | 538 | 1.13e-11 | 66.2 |
MS.gene013095.t1 | MTR_4g108880 | 57.143 | 49 | 21 | 0 | 122 | 170 | 497 | 545 | 4.63e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013095.t1 | AT3G21175 | 58.470 | 183 | 67 | 4 | 68 | 243 | 79 | 259 | 8.86e-62 | 200 |
MS.gene013095.t1 | AT3G21175 | 56.831 | 183 | 72 | 3 | 68 | 243 | 79 | 261 | 9.92e-60 | 194 |
MS.gene013095.t1 | AT1G51600 | 52.736 | 201 | 76 | 5 | 68 | 253 | 83 | 279 | 1.20e-58 | 192 |
MS.gene013095.t1 | AT1G51600 | 52.736 | 201 | 76 | 5 | 68 | 253 | 83 | 279 | 1.20e-58 | 192 |
MS.gene013095.t1 | AT4G24470 | 51.412 | 177 | 82 | 3 | 68 | 243 | 83 | 256 | 9.03e-51 | 172 |
MS.gene013095.t1 | AT4G24470 | 51.412 | 177 | 82 | 3 | 68 | 243 | 83 | 256 | 9.03e-51 | 172 |
MS.gene013095.t1 | AT4G24470 | 51.412 | 177 | 82 | 3 | 68 | 243 | 83 | 256 | 1.21e-50 | 172 |
MS.gene013095.t1 | AT3G21175 | 51.449 | 138 | 60 | 3 | 68 | 198 | 79 | 216 | 1.86e-32 | 121 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
21210 | gene | 53282 | 60863 | 53282 | ID=MS.gene013095 |
21210 | mRNA | 53282 | 60863 | 53282 | ID=MS.gene013095.t1;Parent=MS.gene013095 |
21210 | exon | 53282 | 53542 | 53282 | ID=MS.gene013095.t1.exon1;Parent=MS.gene013095.t1 |
21210 | CDS | 53282 | 53542 | 53282 | ID=cds.MS.gene013095.t1;Parent=MS.gene013095.t1 |
21210 | exon | 55655 | 55741 | 55655 | ID=MS.gene013095.t1.exon2;Parent=MS.gene013095.t1 |
21210 | CDS | 55655 | 55741 | 55655 | ID=cds.MS.gene013095.t1;Parent=MS.gene013095.t1 |
21210 | exon | 55833 | 55966 | 55833 | ID=MS.gene013095.t1.exon3;Parent=MS.gene013095.t1 |
21210 | CDS | 55833 | 55966 | 55833 | ID=cds.MS.gene013095.t1;Parent=MS.gene013095.t1 |
21210 | exon | 58276 | 58386 | 58276 | ID=MS.gene013095.t1.exon4;Parent=MS.gene013095.t1 |
21210 | CDS | 58276 | 58386 | 58276 | ID=cds.MS.gene013095.t1;Parent=MS.gene013095.t1 |
21210 | exon | 58481 | 58592 | 58481 | ID=MS.gene013095.t1.exon5;Parent=MS.gene013095.t1 |
21210 | CDS | 58481 | 58592 | 58481 | ID=cds.MS.gene013095.t1;Parent=MS.gene013095.t1 |
21210 | exon | 59194 | 59253 | 59194 | ID=MS.gene013095.t1.exon6;Parent=MS.gene013095.t1 |
21210 | CDS | 59194 | 59253 | 59194 | ID=cds.MS.gene013095.t1;Parent=MS.gene013095.t1 |
21210 | exon | 60129 | 60194 | 60129 | ID=MS.gene013095.t1.exon7;Parent=MS.gene013095.t1 |
21210 | CDS | 60129 | 60194 | 60129 | ID=cds.MS.gene013095.t1;Parent=MS.gene013095.t1 |
21210 | exon | 60279 | 60353 | 60279 | ID=MS.gene013095.t1.exon8;Parent=MS.gene013095.t1 |
21210 | CDS | 60279 | 60353 | 60279 | ID=cds.MS.gene013095.t1;Parent=MS.gene013095.t1 |
21210 | exon | 60455 | 60535 | 60455 | ID=MS.gene013095.t1.exon9;Parent=MS.gene013095.t1 |
21210 | CDS | 60455 | 60535 | 60455 | ID=cds.MS.gene013095.t1;Parent=MS.gene013095.t1 |
21210 | exon | 60774 | 60863 | 60774 | ID=MS.gene013095.t1.exon10;Parent=MS.gene013095.t1 |
21210 | CDS | 60774 | 60863 | 60774 | ID=cds.MS.gene013095.t1;Parent=MS.gene013095.t1 |
Gene Sequence |
Protein sequence |