Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013135.t1 | XP_003602822.2 | 96.9 | 932 | 28 | 1 | 1 | 932 | 1 | 931 | 0.00E+00 | 1898.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013135.t1 | Q9M9E8 | 59.8 | 919 | 320 | 12 | 11 | 922 | 6 | 882 | 0.0e+00 | 1152.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013135.t1 | G7J3X8 | 96.9 | 932 | 28 | 1 | 1 | 932 | 1 | 931 | 0.0e+00 | 1898.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013135.t1 | TR | Jumonji |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013135.t1 | MTR_3g099370 | 96.888 | 932 | 28 | 1 | 1 | 932 | 1 | 931 | 0.0 | 1864 |
| MS.gene013135.t1 | MTR_7g106990 | 38.904 | 365 | 210 | 8 | 11 | 372 | 87 | 441 | 2.10e-75 | 254 |
| MS.gene013135.t1 | MTR_3g077420 | 22.000 | 300 | 163 | 11 | 136 | 379 | 16 | 300 | 8.59e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013135.t1 | AT1G78280 | 60.375 | 906 | 314 | 11 | 11 | 909 | 6 | 873 | 0.0 | 1115 |
| MS.gene013135.t1 | AT5G06550 | 37.875 | 367 | 215 | 8 | 12 | 376 | 73 | 428 | 1.07e-74 | 254 |
| MS.gene013135.t1 | AT5G63080 | 26.690 | 281 | 164 | 11 | 133 | 379 | 7 | 279 | 6.94e-19 | 91.3 |
Find 212 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTTCTTTGTTAAGATTC+TGG | 0.145954 | 3.1:-79419420 | None:intergenic |
| GCATGGAATACTCTTCTTTC+TGG | 0.157901 | 3.1:+79415396 | MS.gene013135:CDS |
| TGACTTGATACCAATTTATT+TGG | 0.164384 | 3.1:+79421848 | MS.gene013135:CDS |
| TGATTTCAGTGATCTTTCTA+TGG | 0.200906 | 3.1:+79420197 | MS.gene013135:CDS |
| GTCTACATCTTTCAGAGTTT+TGG | 0.213866 | 3.1:-79417148 | None:intergenic |
| GGACTGGAAGCATCGCTTTA+TGG | 0.213881 | 3.1:+79418653 | MS.gene013135:CDS |
| CATCCAGAAGCTATAATTTA+TGG | 0.214640 | 3.1:+79417202 | MS.gene013135:CDS |
| GATATAAATGAATTATTTAA+AGG | 0.220719 | 3.1:-79419302 | None:intergenic |
| CGAATTTGTATGTTTGGATA+TGG | 0.225637 | 3.1:+79416984 | MS.gene013135:CDS |
| CTCTTCTTTCTGGCCGTAAA+AGG | 0.234128 | 3.1:+79415406 | MS.gene013135:CDS |
| TCCTATAGGTGGCTTATAAT+TGG | 0.239011 | 3.1:+79415324 | MS.gene013135:CDS |
| CACCCTCAGGTCATGCTAAA+TGG | 0.250190 | 3.1:+79414893 | MS.gene013135:intron |
| CATATTAGATCTCTCATATC+TGG | 0.253644 | 3.1:-79417369 | None:intergenic |
| ACGTGGATGGTTTCCCGTTT+GGG | 0.269531 | 3.1:+79418935 | MS.gene013135:CDS |
| TTGGATACACACTGACATTA+TGG | 0.277456 | 3.1:+79420041 | MS.gene013135:CDS |
| AACATACTTGGCCTCCTTCC+TGG | 0.278108 | 3.1:+79419241 | MS.gene013135:CDS |
| CTAAACACATCCAAATAAAT+TGG | 0.279520 | 3.1:-79421858 | None:intergenic |
| TAACTTCGAATTTGTATGTT+TGG | 0.284606 | 3.1:+79416978 | MS.gene013135:CDS |
| TTTGATATGTTGCCAGAAAA+AGG | 0.286273 | 3.1:-79421927 | None:intergenic |
| TTGTTTGAGTATAGGAATAC+TGG | 0.294582 | 3.1:+79418973 | MS.gene013135:CDS |
| TCAATCAGTTTGCTAGGAAT+TGG | 0.295536 | 3.1:-79419831 | None:intergenic |
| TTTCCATAAATTATAGCTTC+TGG | 0.297974 | 3.1:-79417205 | None:intergenic |
| CAGATATGAGAGATCTAATA+TGG | 0.307979 | 3.1:+79417370 | MS.gene013135:CDS |
| TGGTTTCCCGTTTGGGGTAT+GGG | 0.311759 | 3.1:+79418942 | MS.gene013135:CDS |
| GACATAATCCTTGAACTTCA+TGG | 0.326012 | 3.1:-79415023 | None:intergenic |
| CTCGCGTCGCTTGCGTTAGC+AGG | 0.327432 | 3.1:+79413123 | MS.gene013135:CDS |
| CATCGCTTAATTATCAAATA+TGG | 0.329184 | 3.1:-79419045 | None:intergenic |
| ATGGTTTCCCGTTTGGGGTA+TGG | 0.336226 | 3.1:+79418941 | MS.gene013135:CDS |
| AACGTGGATGGTTTCCCGTT+TGG | 0.339996 | 3.1:+79418934 | MS.gene013135:CDS |
| CATCCATAGTGGTTCTTCAT+TGG | 0.346934 | 3.1:-79413756 | None:intergenic |
| TGGCACTCTTTGTACTTCTC+TGG | 0.357779 | 3.1:-79413959 | None:intergenic |
| ATCCCAACTTAAATTGGTAT+AGG | 0.361855 | 3.1:-79418857 | None:intergenic |
| GAGAATGGTTGTCCAAGCTT+TGG | 0.365534 | 3.1:+79417337 | MS.gene013135:CDS |
| GATCAGCTGTTACAAAACTA+TGG | 0.367650 | 3.1:+79414956 | MS.gene013135:CDS |
| GAAAGGCTTCCTGTTGGTTC+GGG | 0.369837 | 3.1:+79417580 | MS.gene013135:CDS |
| TTTCGTCGAAAATATATAAT+GGG | 0.370958 | 3.1:-79415075 | None:intergenic |
| CGAAAGGCTTCCTGTTGGTT+CGG | 0.372369 | 3.1:+79417579 | MS.gene013135:CDS |
| CATGGCCTGCCAGGCAGAAA+TGG | 0.378327 | 3.1:+79414927 | MS.gene013135:CDS |
| AATGTAAAGGCTGCTGTCTA+TGG | 0.380107 | 3.1:-79413979 | None:intergenic |
| ATTTATTTGGATGTGTTTAG+AGG | 0.384148 | 3.1:+79421861 | MS.gene013135:CDS |
| ATCAAACAATGCAGCAGAAT+GGG | 0.387429 | 3.1:+79419388 | MS.gene013135:CDS |
| TAGCCGGTAACTCAAGTATA+TGG | 0.392078 | 3.1:+79419022 | MS.gene013135:CDS |
| TGGCCATATACTTGAGTTAC+CGG | 0.392860 | 3.1:-79419025 | None:intergenic |
| TGGATGACTCTATGCCTAAA+AGG | 0.397240 | 3.1:+79413773 | MS.gene013135:CDS |
| CCTCCTGGAAAAGTGCCTTT+AGG | 0.405897 | 3.1:+79416597 | MS.gene013135:CDS |
| TGCCTAAAAGGAGGAGCATC+TGG | 0.408109 | 3.1:+79413785 | MS.gene013135:CDS |
| GGGCAACAGCATTGGTCAAC+GGG | 0.409974 | 3.1:+79417308 | MS.gene013135:CDS |
| GGTAGTTGTGTACATTCAAT+TGG | 0.411189 | 3.1:-79416862 | None:intergenic |
| ACATACTTGGCCTCCTTCCT+GGG | 0.411835 | 3.1:+79419242 | MS.gene013135:CDS |
| GTATAGGAATACTGGGATTC+CGG | 0.412569 | 3.1:+79418981 | MS.gene013135:CDS |
| GTTGTCCATTTCTGCCTGGC+AGG | 0.425101 | 3.1:-79414932 | None:intergenic |
| GAAACATATTCCTAGTGTTA+TGG | 0.425446 | 3.1:+79418804 | MS.gene013135:CDS |
| CAGGCATTCTAACCACTTGC+CGG | 0.427854 | 3.1:-79417512 | None:intergenic |
| ATATTGAACGTGAATTAAAC+TGG | 0.429371 | 3.1:+79419327 | MS.gene013135:CDS |
| AATCCTATACCAATTTAAGT+TGG | 0.431151 | 3.1:+79418854 | MS.gene013135:CDS |
| TGGCGAATACATGGCCTGCC+AGG | 0.433299 | 3.1:+79414918 | MS.gene013135:CDS |
| GATTTCAGTGATCTTTCTAT+GGG | 0.433748 | 3.1:+79420198 | MS.gene013135:CDS |
| ACGTGCCCCTAGCTTATTGA+AGG | 0.437387 | 3.1:+79415236 | MS.gene013135:CDS |
| ACAGAGGGTGGTCTAAAGTT+TGG | 0.438033 | 3.1:+79421960 | MS.gene013135:CDS |
| GCAAGCAATTGTTTGAGTAT+AGG | 0.439732 | 3.1:+79418965 | MS.gene013135:CDS |
| ATCCTATACCAATTTAAGTT+GGG | 0.441548 | 3.1:+79418855 | MS.gene013135:CDS |
| ATCAGTTGTCCATTTCTGCC+TGG | 0.443048 | 3.1:-79414936 | None:intergenic |
| GAAGCATCGCTTTATGGTTT+AGG | 0.443732 | 3.1:+79418659 | MS.gene013135:CDS |
| CACAGAGATCTGGTGCCTCT+TGG | 0.445712 | 3.1:+79415349 | MS.gene013135:CDS |
| AAAGATCTCCATGAAGTTCA+AGG | 0.447205 | 3.1:+79415015 | MS.gene013135:CDS |
| TGCTTGCCCCATACCCCAAA+CGG | 0.447802 | 3.1:-79418949 | None:intergenic |
| TGTAAATAGGTTTATCTAGT+GGG | 0.450022 | 3.1:+79418599 | MS.gene013135:intron |
| GCACCTGGTTATCGTCATAA+AGG | 0.453039 | 3.1:+79417006 | MS.gene013135:CDS |
| TTCTTCAATACAAAGGCTCT+TGG | 0.456556 | 3.1:+79413810 | MS.gene013135:CDS |
| TATCCAATGAAGAACCACTA+TGG | 0.457458 | 3.1:+79413753 | MS.gene013135:CDS |
| CTGAAATCAAGGAGGTAACT+AGG | 0.465174 | 3.1:-79420183 | None:intergenic |
| GCACTTCTAAACCCTGCTCT+TGG | 0.465947 | 3.1:+79420022 | MS.gene013135:CDS |
| TTCCATGCACTTGTAAGAGC+TGG | 0.466147 | 3.1:-79415381 | None:intergenic |
| TTCCTAGTGTTATGGCCAGT+GGG | 0.468965 | 3.1:+79418812 | MS.gene013135:CDS |
| TAGAAAGATCACTGAAATCA+AGG | 0.469489 | 3.1:-79420194 | None:intergenic |
| GTCAGTGTGTATCCAAGAGC+AGG | 0.469541 | 3.1:-79420034 | None:intergenic |
| AAGTATACCACTTGGTCAAA+CGG | 0.469956 | 3.1:-79419457 | None:intergenic |
| CAGATAAACGACCATCCTAT+AGG | 0.470762 | 3.1:+79415310 | MS.gene013135:CDS |
| CCTTTCGTCATCTGTGGGAG+GGG | 0.475975 | 3.1:-79417563 | None:intergenic |
| TTGAAGCCAACTCCCCTCTC+AGG | 0.479773 | 3.1:+79418782 | MS.gene013135:CDS |
| TCTAGAACCTGCAGTGATGA+TGG | 0.481252 | 3.1:-79416669 | None:intergenic |
| TCCAATTATAAGCCACCTAT+AGG | 0.486415 | 3.1:-79415325 | None:intergenic |
| ATAATTGGACCACAGAGATC+TGG | 0.489173 | 3.1:+79415339 | MS.gene013135:CDS |
| GCCTTTCGTCATCTGTGGGA+GGG | 0.490405 | 3.1:-79417564 | None:intergenic |
| GAATTATTTAAAGGTGGATG+TGG | 0.496530 | 3.1:-79419293 | None:intergenic |
| AATCAAACAATGCAGCAGAA+TGG | 0.499094 | 3.1:+79419387 | MS.gene013135:CDS |
| CAATTTATGTTCCGAGTGGA+TGG | 0.499365 | 3.1:+79416893 | MS.gene013135:CDS |
| GGTTTCCCGTTTGGGGTATG+GGG | 0.499368 | 3.1:+79418943 | MS.gene013135:CDS |
| ACATGCACCGTCACACCTAA+AGG | 0.501322 | 3.1:-79416612 | None:intergenic |
| AGGTGGGCATTATATCCTCC+TGG | 0.509762 | 3.1:+79416582 | MS.gene013135:intron |
| GCTTGCCCCATACCCCAAAC+GGG | 0.510621 | 3.1:-79418948 | None:intergenic |
| ATGTTTCCTGAGAGGGGAGT+TGG | 0.512138 | 3.1:-79418788 | None:intergenic |
| TGGAGCTCGGGCAACAGCAT+TGG | 0.513686 | 3.1:+79417300 | MS.gene013135:CDS |
| TATACCAATTTAAGTTGGGA+TGG | 0.514509 | 3.1:+79418859 | MS.gene013135:CDS |
| TAAATGGACTGGCGAATACA+TGG | 0.516680 | 3.1:+79414909 | MS.gene013135:CDS |
| ATTGAGCAGAGGATTTCATC+GGG | 0.517061 | 3.1:-79413071 | None:intergenic |
| AATTTAAGTTGGGATGGAAA+AGG | 0.517463 | 3.1:+79418865 | MS.gene013135:CDS |
| CAGTAATCCTTCAATAAGCT+AGG | 0.518812 | 3.1:-79415243 | None:intergenic |
| AATTGAGCAGAGGATTTCAT+CGG | 0.521661 | 3.1:-79413072 | None:intergenic |
| AATAAATGACATCTCAATGA+AGG | 0.522634 | 3.1:+79414218 | MS.gene013135:CDS |
| CAAGTATGACATGAAGAAAC+CGG | 0.525208 | 3.1:+79414251 | MS.gene013135:CDS |
| TAAGTTACTCTGATTTGTCA+AGG | 0.527231 | 3.1:+79417112 | MS.gene013135:CDS |
| TTGATAATTAAGCGATGTGA+GGG | 0.528989 | 3.1:+79419051 | MS.gene013135:CDS |
| TAGGAATATGTTTCCTGAGA+GGG | 0.530545 | 3.1:-79418795 | None:intergenic |
| CGGGCAACAGCATTGGTCAA+CGG | 0.534919 | 3.1:+79417307 | MS.gene013135:CDS |
| AGGCATAGAGTCATCCATAG+TGG | 0.536115 | 3.1:-79413767 | None:intergenic |
| ATAAATGAATTATTTAAAGG+TGG | 0.536575 | 3.1:-79419299 | None:intergenic |
| TATGGATGATAATATTTACA+TGG | 0.536763 | 3.1:+79420059 | MS.gene013135:CDS |
| ATTGCTCTTCAAAATGACAC+TGG | 0.537117 | 3.1:-79418893 | None:intergenic |
| AGTAATCCTTCAATAAGCTA+GGG | 0.541163 | 3.1:-79415242 | None:intergenic |
| TGTTTGAGTATAGGAATACT+GGG | 0.542687 | 3.1:+79418974 | MS.gene013135:CDS |
| CAAGGATTATGTCTCATACA+TGG | 0.543266 | 3.1:+79415033 | MS.gene013135:CDS |
| GCATGCATTGCACTAAATGC+CGG | 0.547137 | 3.1:+79417493 | MS.gene013135:CDS |
| CTGTAAATAGGTTTATCTAG+TGG | 0.547357 | 3.1:+79418598 | MS.gene013135:intron |
| TAAGCTGCTAAATATAAATG+AGG | 0.548356 | 3.1:+79419887 | MS.gene013135:CDS |
| GGAACATAAATTGTCTCTCC+AGG | 0.550858 | 3.1:-79416883 | None:intergenic |
| AGGAAGCCTTTCGTCATCTG+TGG | 0.551264 | 3.1:-79417569 | None:intergenic |
| AAACTAACTGATCCGTCCGC+CGG | 0.551543 | 3.1:-79419000 | None:intergenic |
| GATCGCAGAATAGACGCTCT+TGG | 0.552054 | 3.1:+79413032 | MS.gene013135:CDS |
| ATCCAGCTCTTACAAGTGCA+TGG | 0.557351 | 3.1:+79415379 | MS.gene013135:CDS |
| ACCACGTTGGAGTGAAATCC+TGG | 0.558962 | 3.1:+79420157 | MS.gene013135:CDS |
| GACGGATCAGTTAGTTTAGC+CGG | 0.560179 | 3.1:+79419006 | MS.gene013135:CDS |
| GTGGGAAGATACAACATACT+TGG | 0.560604 | 3.1:+79419229 | MS.gene013135:CDS |
| GCGACGCGAGCAGCATCTTG+AGG | 0.560780 | 3.1:-79413110 | None:intergenic |
| GGATTGCTACCCGAACCAAC+AGG | 0.563415 | 3.1:-79417589 | None:intergenic |
| GAGGTAGAGCAAATCGATGA+TGG | 0.564450 | 3.1:-79420084 | None:intergenic |
| TTGCATTTAAAATTTCTCAA+AGG | 0.564534 | 3.1:+79414984 | MS.gene013135:CDS |
| CGTGGATGGTTTCCCGTTTG+GGG | 0.564553 | 3.1:+79418936 | MS.gene013135:CDS |
| TTGTTACCATCAAAATGTAA+AGG | 0.567945 | 3.1:-79413992 | None:intergenic |
| AGAAGCTATAATTTATGGAA+AGG | 0.568532 | 3.1:+79417207 | MS.gene013135:CDS |
| TGAGACTCCATCATCACTGC+AGG | 0.568853 | 3.1:+79416662 | MS.gene013135:CDS |
| CATAAAGGAGTCTGCCGTGT+GGG | 0.569358 | 3.1:+79417021 | MS.gene013135:CDS |
| CCAGAATCTTAACAAAGAAG+AGG | 0.570253 | 3.1:+79419420 | MS.gene013135:CDS |
| AGCCTTTCGTCATCTGTGGG+AGG | 0.570411 | 3.1:-79417565 | None:intergenic |
| ACCCCACTGGCCATAACACT+AGG | 0.575861 | 3.1:-79418814 | None:intergenic |
| TCAGGTCATGCTAAATGGAC+TGG | 0.577021 | 3.1:+79414898 | MS.gene013135:intron |
| AGCATCTTCTGTATTCCCAC+TGG | 0.577196 | 3.1:-79420106 | None:intergenic |
| AGCTATAATTTATGGAAAGG+TGG | 0.579530 | 3.1:+79417210 | MS.gene013135:CDS |
| ATTCCTAGTGTTATGGCCAG+TGG | 0.580711 | 3.1:+79418811 | MS.gene013135:CDS |
| ATCAAAGTACGAGTCAACAG+AGG | 0.583079 | 3.1:+79421944 | MS.gene013135:CDS |
| TCTCAAGCCGTTTGACCAAG+TGG | 0.584548 | 3.1:+79419450 | MS.gene013135:CDS |
| CTTTCGTCATCTGTGGGAGG+GGG | 0.587951 | 3.1:-79417562 | None:intergenic |
| TCCTAGTGTTATGGCCAGTG+GGG | 0.588471 | 3.1:+79418813 | MS.gene013135:CDS |
| AATACTGGGATTCCGGCGGA+CGG | 0.589838 | 3.1:+79418988 | MS.gene013135:CDS |
| GTCAACGGGAACTAAGAGAA+TGG | 0.591171 | 3.1:+79417322 | MS.gene013135:CDS |
| AGCAGCTTAGATAAATCAGA+TGG | 0.592390 | 3.1:-79419873 | None:intergenic |
| TTTGATAATTAAGCGATGTG+AGG | 0.594501 | 3.1:+79419050 | MS.gene013135:CDS |
| TCGATTTGCTCTACCTCCAG+TGG | 0.595230 | 3.1:+79420090 | MS.gene013135:CDS |
| TTAAACTGGTCTGAGGTGAA+TGG | 0.595295 | 3.1:+79419341 | MS.gene013135:CDS |
| ACAGAGAAATGCAACGTGGA+TGG | 0.595885 | 3.1:+79418922 | MS.gene013135:CDS |
| GTAAATAGGTTTATCTAGTG+GGG | 0.600129 | 3.1:+79418600 | MS.gene013135:intron |
| ATCTTCTGTATTCCCACTGG+AGG | 0.600340 | 3.1:-79420103 | None:intergenic |
| TATGAGAGATCTAATATGGA+AGG | 0.601472 | 3.1:+79417374 | MS.gene013135:CDS |
| TGACTTCAGAATTTCTCAAG+TGG | 0.604991 | 3.1:+79420000 | MS.gene013135:intron |
| AATCTTAACAAAGAAGAGGA+AGG | 0.605956 | 3.1:+79419424 | MS.gene013135:CDS |
| AATACAGAAGATGCTGCCGA+GGG | 0.606356 | 3.1:+79420114 | MS.gene013135:CDS |
| GTATGTTTGGATATGGCACC+TGG | 0.607998 | 3.1:+79416991 | MS.gene013135:CDS |
| ATTATAAGCCACCTATAGGA+TGG | 0.608178 | 3.1:-79415321 | None:intergenic |
| CCCCTCCCACAGATGACGAA+AGG | 0.610507 | 3.1:+79417563 | MS.gene013135:CDS |
| TTGCACTAAATGCCGGCAAG+TGG | 0.611811 | 3.1:+79417500 | MS.gene013135:CDS |
| GTGCATGTTAATGAAGAAGA+TGG | 0.611852 | 3.1:+79416627 | MS.gene013135:CDS |
| AGCTCCACTCAAAATTGTAG+TGG | 0.612842 | 3.1:-79417284 | None:intergenic |
| GGAAGCCTTTCGTCATCTGT+GGG | 0.613871 | 3.1:-79417568 | None:intergenic |
| CAGAAGAGACAGACTATCGT+GGG | 0.616345 | 3.1:+79419211 | MS.gene013135:intron |
| TGTTTAGAAAGAGAAATAAG+TGG | 0.619138 | 3.1:+79417177 | MS.gene013135:CDS |
| TTGCTCTTCAAAATGACACT+GGG | 0.620536 | 3.1:-79418892 | None:intergenic |
| GAATACAGAAGATGCTGCCG+AGG | 0.621862 | 3.1:+79420113 | MS.gene013135:CDS |
| TACAGAAGATGCTGCCGAGG+GGG | 0.626315 | 3.1:+79420116 | MS.gene013135:CDS |
| TTGTCTTCGTCAGCAAGAAG+AGG | 0.627512 | 3.1:-79416838 | None:intergenic |
| AGGAATATGTTTCCTGAGAG+GGG | 0.628568 | 3.1:-79418794 | None:intergenic |
| GTGGATGTGGTAAAAGATGA+AGG | 0.628693 | 3.1:-79419280 | None:intergenic |
| CGATTTGCTCTACCTCCAGT+GGG | 0.629855 | 3.1:+79420091 | MS.gene013135:CDS |
| CATACTTGGCCTCCTTCCTG+GGG | 0.630626 | 3.1:+79419243 | MS.gene013135:CDS |
| ATACAGTGCCACCATCCACT+CGG | 0.631096 | 3.1:-79416904 | None:intergenic |
| TCAAACAATGCAGCAGAATG+GGG | 0.631106 | 3.1:+79419389 | MS.gene013135:CDS |
| GACGTTCGAGAATTGAGCAG+AGG | 0.634922 | 3.1:-79413082 | None:intergenic |
| GATGACGAAAGGCTTCCTGT+TGG | 0.636057 | 3.1:+79417574 | MS.gene013135:CDS |
| TTTATGTTCCGAGTGGATGG+TGG | 0.637501 | 3.1:+79416896 | MS.gene013135:CDS |
| TTCAAGATAAACAACCCCAC+TGG | 0.638268 | 3.1:-79418827 | None:intergenic |
| ATTGAATGTACACAACTACC+TGG | 0.639305 | 3.1:+79416865 | MS.gene013135:CDS |
| GCAGAAGAGACAGACTATCG+TGG | 0.640708 | 3.1:+79419210 | MS.gene013135:intron |
| CTAGGAATATGTTTCCTGAG+AGG | 0.644586 | 3.1:-79418796 | None:intergenic |
| ACTCCTTTATGACGATAACC+AGG | 0.653563 | 3.1:-79417009 | None:intergenic |
| CAAGAGCAAGCAAACCCACA+CGG | 0.656542 | 3.1:-79417035 | None:intergenic |
| GAGACAATTTATGTTCCGAG+TGG | 0.659270 | 3.1:+79416889 | MS.gene013135:CDS |
| TCAAAGTACGAGTCAACAGA+GGG | 0.660427 | 3.1:+79421945 | MS.gene013135:CDS |
| ATACTTGGCCTCCTTCCTGG+GGG | 0.660706 | 3.1:+79419244 | MS.gene013135:CDS |
| TCAGTGTGTATCCAAGAGCA+GGG | 0.663517 | 3.1:-79420033 | None:intergenic |
| AAGGAGGTAACTAGGACACC+AGG | 0.663763 | 3.1:-79420175 | None:intergenic |
| AAAAGTGCCTTTAGGTGTGA+CGG | 0.668167 | 3.1:+79416605 | MS.gene013135:CDS |
| GGTTTATTGAGTGACCACGT+TGG | 0.675486 | 3.1:+79420144 | MS.gene013135:CDS |
| AGCTGGATCAACATGCCAAG+AGG | 0.677057 | 3.1:-79415364 | None:intergenic |
| TGTATAAAATGTATCCAGTG+TGG | 0.684015 | 3.1:-79414175 | None:intergenic |
| TATCCAGTGTGGTATGACAC+CGG | 0.684470 | 3.1:-79414164 | None:intergenic |
| ATAAACGACCATCCTATAGG+TGG | 0.685021 | 3.1:+79415313 | MS.gene013135:CDS |
| TGATAATTAAGCGATGTGAG+GGG | 0.689937 | 3.1:+79419052 | MS.gene013135:CDS |
| AAGTACGAGTCAACAGAGGG+TGG | 0.691127 | 3.1:+79421948 | MS.gene013135:CDS |
| ATGACTCTATGCCTAAAAGG+AGG | 0.692833 | 3.1:+79413776 | MS.gene013135:CDS |
| TTATACAGAGGGTGGCAATG+TGG | 0.697663 | 3.1:+79414191 | MS.gene013135:CDS |
| TCATAAAGGAGTCTGCCGTG+TGG | 0.699636 | 3.1:+79417020 | MS.gene013135:CDS |
| ATACCGGTGTCATACCACAC+TGG | 0.707579 | 3.1:+79414161 | MS.gene013135:CDS |
| CTGTATCTAAGATATCGAAG+AGG | 0.711016 | 3.1:-79415290 | None:intergenic |
| TAGGAATACTGGGATTCCGG+CGG | 0.711408 | 3.1:+79418984 | MS.gene013135:CDS |
| ACGTGAATTAAACTGGTCTG+AGG | 0.711510 | 3.1:+79419334 | MS.gene013135:CDS |
| GCTTTATGGTTTAGGCACAG+AGG | 0.719101 | 3.1:+79418667 | MS.gene013135:CDS |
| GTAATCCTTCAATAAGCTAG+GGG | 0.720242 | 3.1:-79415241 | None:intergenic |
| ATACAGAAGATGCTGCCGAG+GGG | 0.739771 | 3.1:+79420115 | MS.gene013135:CDS |
| CAAGAGGCACCAGATCTCTG+TGG | 0.740954 | 3.1:-79415348 | None:intergenic |
| CATCACAGAGAAATGCAACG+TGG | 0.742244 | 3.1:+79418918 | MS.gene013135:CDS |
| AAAGATCACTGAAATCAAGG+AGG | 0.742693 | 3.1:-79420191 | None:intergenic |
| ACCAGGATTTCACTCCAACG+TGG | 0.759662 | 3.1:-79420158 | None:intergenic |
| GATGTGGTAAAAGATGAAGG+TGG | 0.808325 | 3.1:-79419277 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 79412996 | 79422003 | 79412996 | ID=MS.gene013135 |
| chr3.1 | mRNA | 79412996 | 79422003 | 79412996 | ID=MS.gene013135.t1;Parent=MS.gene013135 |
| chr3.1 | exon | 79412996 | 79413144 | 79412996 | ID=MS.gene013135.t1.exon1;Parent=MS.gene013135.t1 |
| chr3.1 | CDS | 79412996 | 79413144 | 79412996 | ID=cds.MS.gene013135.t1;Parent=MS.gene013135.t1 |
| chr3.1 | exon | 79413739 | 79413852 | 79413739 | ID=MS.gene013135.t1.exon2;Parent=MS.gene013135.t1 |
| chr3.1 | CDS | 79413739 | 79413852 | 79413739 | ID=cds.MS.gene013135.t1;Parent=MS.gene013135.t1 |
| chr3.1 | exon | 79413949 | 79414007 | 79413949 | ID=MS.gene013135.t1.exon3;Parent=MS.gene013135.t1 |
| chr3.1 | CDS | 79413949 | 79414007 | 79413949 | ID=cds.MS.gene013135.t1;Parent=MS.gene013135.t1 |
| chr3.1 | exon | 79414130 | 79414272 | 79414130 | ID=MS.gene013135.t1.exon4;Parent=MS.gene013135.t1 |
| chr3.1 | CDS | 79414130 | 79414272 | 79414130 | ID=cds.MS.gene013135.t1;Parent=MS.gene013135.t1 |
| chr3.1 | exon | 79414902 | 79415099 | 79414902 | ID=MS.gene013135.t1.exon5;Parent=MS.gene013135.t1 |
| chr3.1 | CDS | 79414902 | 79415099 | 79414902 | ID=cds.MS.gene013135.t1;Parent=MS.gene013135.t1 |
| chr3.1 | exon | 79415228 | 79415427 | 79415228 | ID=MS.gene013135.t1.exon6;Parent=MS.gene013135.t1 |
| chr3.1 | CDS | 79415228 | 79415427 | 79415228 | ID=cds.MS.gene013135.t1;Parent=MS.gene013135.t1 |
| chr3.1 | exon | 79416584 | 79416683 | 79416584 | ID=MS.gene013135.t1.exon7;Parent=MS.gene013135.t1 |
| chr3.1 | CDS | 79416584 | 79416683 | 79416584 | ID=cds.MS.gene013135.t1;Parent=MS.gene013135.t1 |
| chr3.1 | exon | 79416820 | 79417395 | 79416820 | ID=MS.gene013135.t1.exon8;Parent=MS.gene013135.t1 |
| chr3.1 | CDS | 79416820 | 79417395 | 79416820 | ID=cds.MS.gene013135.t1;Parent=MS.gene013135.t1 |
| chr3.1 | exon | 79417490 | 79417612 | 79417490 | ID=MS.gene013135.t1.exon9;Parent=MS.gene013135.t1 |
| chr3.1 | CDS | 79417490 | 79417612 | 79417490 | ID=cds.MS.gene013135.t1;Parent=MS.gene013135.t1 |
| chr3.1 | exon | 79418608 | 79418688 | 79418608 | ID=MS.gene013135.t1.exon10;Parent=MS.gene013135.t1 |
| chr3.1 | CDS | 79418608 | 79418688 | 79418608 | ID=cds.MS.gene013135.t1;Parent=MS.gene013135.t1 |
| chr3.1 | exon | 79418760 | 79419091 | 79418760 | ID=MS.gene013135.t1.exon11;Parent=MS.gene013135.t1 |
| chr3.1 | CDS | 79418760 | 79419091 | 79418760 | ID=cds.MS.gene013135.t1;Parent=MS.gene013135.t1 |
| chr3.1 | exon | 79419214 | 79419471 | 79419214 | ID=MS.gene013135.t1.exon12;Parent=MS.gene013135.t1 |
| chr3.1 | CDS | 79419214 | 79419471 | 79419214 | ID=cds.MS.gene013135.t1;Parent=MS.gene013135.t1 |
| chr3.1 | exon | 79419824 | 79419908 | 79419824 | ID=MS.gene013135.t1.exon13;Parent=MS.gene013135.t1 |
| chr3.1 | CDS | 79419824 | 79419908 | 79419824 | ID=cds.MS.gene013135.t1;Parent=MS.gene013135.t1 |
| chr3.1 | exon | 79420009 | 79420219 | 79420009 | ID=MS.gene013135.t1.exon14;Parent=MS.gene013135.t1 |
| chr3.1 | CDS | 79420009 | 79420219 | 79420009 | ID=cds.MS.gene013135.t1;Parent=MS.gene013135.t1 |
| chr3.1 | exon | 79421835 | 79422003 | 79421835 | ID=MS.gene013135.t1.exon15;Parent=MS.gene013135.t1 |
| chr3.1 | CDS | 79421835 | 79422003 | 79421835 | ID=cds.MS.gene013135.t1;Parent=MS.gene013135.t1 |
| Gene Sequence |
| Protein sequence |
