AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene013174

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013174.t1 MTR_3g098810 94.191 241 14 0 1 241 1 241 5.70e-150 417
MS.gene013174.t1 MTR_3g098810 95.455 154 7 0 1 154 1 154 1.05e-100 290
MS.gene013174.t1 MTR_8g099750 69.417 206 50 3 1 206 1 193 1.34e-100 292
MS.gene013174.t1 MTR_7g005280 62.570 179 55 5 1 178 1 168 1.92e-73 224
MS.gene013174.t1 MTR_7g085220 48.810 168 77 3 12 172 6 171 2.44e-52 172
MS.gene013174.t1 MTR_2g080010 50.000 174 73 6 14 176 15 185 1.96e-50 168
MS.gene013174.t1 MTR_3g088110 47.802 182 81 5 13 192 6 175 3.57e-50 166
MS.gene013174.t1 MTR_4g081870 49.693 163 74 3 12 172 7 163 3.81e-50 165
MS.gene013174.t1 MTR_5g041940 50.000 160 72 3 14 171 3 156 1.86e-49 163
MS.gene013174.t1 MTR_4g089135 46.667 180 75 3 13 173 14 191 5.02e-49 164
MS.gene013174.t1 MTR_8g094580 48.780 164 75 3 10 171 3 159 6.50e-49 162
MS.gene013174.t1 MTR_2157s0010 45.652 184 87 5 14 185 8 190 8.90e-49 161
MS.gene013174.t1 MTR_2g093810 50.877 171 71 5 14 182 14 173 1.45e-48 162
MS.gene013174.t1 MTR_7g100990 48.125 160 77 3 13 170 10 165 3.86e-48 161
MS.gene013174.t1 MTR_8g059170 47.853 163 75 3 14 174 14 168 8.66e-46 155
MS.gene013174.t1 MTR_3g096920 46.341 164 78 3 10 171 3 158 2.23e-45 153
MS.gene013174.t1 MTR_2g079990 47.531 162 73 3 14 173 16 167 1.45e-44 153
MS.gene013174.t1 MTR_5g012080 46.471 170 72 5 9 171 2 159 8.16e-44 151
MS.gene013174.t1 MTR_2g068880 39.336 211 102 4 6 190 13 223 1.09e-43 149
MS.gene013174.t1 MTR_4g101680 43.931 173 80 4 9 176 2 162 1.39e-43 150
MS.gene013174.t1 MTR_8g076110 45.455 165 73 3 14 173 6 158 1.62e-43 149
MS.gene013174.t1 MTR_5g090970 47.170 159 79 3 16 170 20 177 3.30e-43 148
MS.gene013174.t1 MTR_5g090970 46.875 160 79 3 16 170 20 178 5.34e-43 148
MS.gene013174.t1 MTR_4g036030 44.643 168 76 4 9 171 2 157 6.60e-43 148
MS.gene013174.t1 MTR_2g062730 43.529 170 80 4 10 174 6 164 9.66e-43 148
MS.gene013174.t1 MTR_5g021710 46.988 166 71 4 14 174 8 161 2.35e-42 147
MS.gene013174.t1 MTR_3g064580 47.531 162 70 4 14 170 6 157 3.61e-42 152
MS.gene013174.t1 MTR_8g024480 44.186 172 82 4 9 171 10 176 5.31e-42 148
MS.gene013174.t1 MTR_4g108760 44.654 159 78 4 14 170 17 167 6.57e-42 146
MS.gene013174.t1 MTR_3g435150 44.444 162 80 4 14 173 16 169 6.71e-42 145
MS.gene013174.t1 MTR_8g467490 41.667 180 94 4 8 178 4 181 9.33e-42 147
MS.gene013174.t1 MTR_5g076850 45.342 161 74 3 14 170 6 156 9.54e-42 150
MS.gene013174.t1 MTR_5g069030 44.379 169 80 3 11 175 22 180 1.09e-41 150
MS.gene013174.t1 MTR_6g084430 42.767 159 77 3 14 170 5 151 1.35e-41 144
MS.gene013174.t1 MTR_2g079990 42.391 184 78 3 14 173 16 195 1.85e-41 145
MS.gene013174.t1 MTR_6g011860 41.808 177 95 3 2 173 3 176 2.14e-41 145
MS.gene013174.t1 MTR_2g068920 38.389 211 109 4 16 205 23 233 2.46e-41 143
MS.gene013174.t1 MTR_5g040420 40.722 194 98 5 16 195 16 206 2.84e-41 145
MS.gene013174.t1 MTR_3g109340 43.210 162 81 3 14 173 22 174 3.36e-41 144
MS.gene013174.t1 MTR_3g109340 43.210 162 80 3 14 173 22 173 3.81e-41 144
MS.gene013174.t1 MTR_1g096430 43.275 171 80 3 14 179 7 165 7.80e-41 143
MS.gene013174.t1 MTR_3g096920 39.000 200 77 4 10 171 3 195 1.18e-40 142
MS.gene013174.t1 MTR_3g093040 42.515 167 82 3 14 176 108 264 1.56e-40 141
MS.gene013174.t1 MTR_3g093050 43.529 170 82 3 11 176 19 178 2.14e-40 146
MS.gene013174.t1 MTR_6g477900 39.196 199 98 6 14 199 6 194 3.23e-40 139
MS.gene013174.t1 MTR_3g093050 43.529 170 82 3 11 176 19 178 3.40e-40 146
MS.gene013174.t1 MTR_3g070030 45.342 161 79 3 13 171 18 171 4.40e-40 141
MS.gene013174.t1 MTR_1g008740 38.806 201 98 6 14 202 27 214 5.40e-40 141
MS.gene013174.t1 MTR_1g008740 38.806 201 98 6 14 202 13 200 5.73e-40 141
MS.gene013174.t1 MTR_6g012670 43.558 163 76 4 13 170 19 170 1.08e-39 139
MS.gene013174.t1 MTR_7g085260 40.223 179 96 5 14 186 17 190 1.60e-39 140
MS.gene013174.t1 MTR_4g035590 44.172 163 73 4 14 171 8 157 1.77e-39 140
MS.gene013174.t1 MTR_3g096140 41.317 167 84 3 16 178 9 165 5.98e-39 136
MS.gene013174.t1 MTR_2g078700 42.236 161 85 4 12 170 21 175 6.38e-39 139
MS.gene013174.t1 MTR_5g014300 40.678 177 88 4 10 178 2 169 7.04e-39 137
MS.gene013174.t1 MTR_1g069805 42.683 164 80 4 12 173 8 159 1.88e-38 135
MS.gene013174.t1 MTR_2g064090 42.857 161 79 4 14 170 6 157 2.11e-38 137
MS.gene013174.t1 MTR_3g096140 41.317 167 84 3 16 178 9 165 4.28e-38 136
MS.gene013174.t1 MTR_4g098630 44.172 163 80 4 12 170 4 159 4.46e-38 135
MS.gene013174.t1 MTR_4g134460 43.293 164 78 5 16 177 56 206 3.74e-37 135
MS.gene013174.t1 MTR_6g032770 41.212 165 87 5 14 176 18 174 9.65e-37 133
MS.gene013174.t1 MTR_8g063550 38.728 173 92 3 10 178 2 164 2.66e-36 131
MS.gene013174.t1 MTR_7g097090 43.396 159 76 4 12 168 8 154 3.02e-36 130
MS.gene013174.t1 MTR_8g063550 38.728 173 92 3 10 178 2 164 4.92e-36 132
MS.gene013174.t1 MTR_8g063550 38.728 173 92 3 10 178 2 164 1.34e-35 131
MS.gene013174.t1 MTR_8g093580 38.728 173 92 3 10 178 2 164 1.54e-35 132
MS.gene013174.t1 MTR_2g064470 39.877 163 85 5 12 172 9 160 1.57e-35 128
MS.gene013174.t1 MTR_1g097300 41.317 167 84 3 16 178 21 177 1.64e-35 132
MS.gene013174.t1 MTR_4g075980 44.755 143 74 3 1 141 4 143 2.03e-35 127
MS.gene013174.t1 MTR_3g116070 47.368 133 65 3 14 143 23 153 2.15e-35 129
MS.gene013174.t1 MTR_1g090723 41.520 171 78 7 16 178 10 166 6.93e-35 131
MS.gene013174.t1 MTR_1g090723 41.520 171 78 7 16 178 10 166 9.65e-35 131
MS.gene013174.t1 MTR_7g011120 38.235 170 96 3 7 171 1 166 1.10e-34 126
MS.gene013174.t1 MTR_1g090723 41.520 171 79 7 16 178 10 167 1.99e-34 130
MS.gene013174.t1 MTR_8g023860 41.104 163 77 6 11 168 9 157 2.71e-34 127
MS.gene013174.t1 MTR_7g011130 37.500 176 95 3 7 171 12 183 3.43e-34 125
MS.gene013174.t1 MTR_1g090720 42.604 169 89 2 14 178 42 206 3.53e-34 128
MS.gene013174.t1 MTR_8g023840 40.252 159 76 5 14 167 11 155 3.50e-33 124
MS.gene013174.t1 MTR_0036s0150 40.351 171 80 6 16 178 7 163 8.70e-33 125
MS.gene013174.t1 MTR_2g086880 42.105 133 70 2 10 139 14 142 2.82e-32 123
MS.gene013174.t1 MTR_2g086880 42.105 133 70 2 10 139 14 142 3.02e-32 124
MS.gene013174.t1 MTR_3g070040 42.208 154 82 3 18 171 12 158 3.43e-32 120
MS.gene013174.t1 MTR_4g094302 35.802 162 94 3 14 174 11 163 7.76e-32 115
MS.gene013174.t1 MTR_8g023930 37.500 168 86 5 14 176 24 177 1.17e-30 118
MS.gene013174.t1 MTR_8g094580 48.148 108 49 2 64 171 5 105 1.29e-30 113
MS.gene013174.t1 MTR_3g096140 38.312 154 81 3 29 178 1 144 1.83e-30 115
MS.gene013174.t1 MTR_2g086690 38.650 163 86 4 15 169 5 161 6.18e-29 109
MS.gene013174.t1 MTR_8g023900 37.576 165 84 5 17 176 196 346 6.26e-29 113
MS.gene013174.t1 MTR_8g023900 32.955 176 97 7 14 181 12 174 1.26e-23 99.0
MS.gene013174.t1 MTR_4g052620 39.264 163 86 5 14 169 5 161 6.92e-29 110
MS.gene013174.t1 MTR_4g094302 41.860 129 65 3 14 141 11 130 9.04e-29 106
MS.gene013174.t1 MTR_7g105170 33.728 169 96 6 14 172 4 166 2.88e-25 100
MS.gene013174.t1 MTR_7g070140 52.632 95 38 2 49 143 6 93 3.45e-25 97.1
MS.gene013174.t1 MTR_8g093790 34.524 168 78 7 13 178 9 146 2.72e-24 95.9
MS.gene013174.t1 MTR_8g023880 30.899 178 86 7 12 170 5 164 6.49e-21 89.0
MS.gene013174.t1 MTR_3g096400 31.515 165 93 7 13 168 6 159 5.90e-20 85.1
MS.gene013174.t1 MTR_7g070150 43.333 90 33 3 112 201 8 79 1.73e-17 75.5
MS.gene013174.t1 MTR_7g116460 30.645 186 104 9 20 193 11 183 3.66e-13 66.6
MS.gene013174.t1 MTR_7g083330 29.771 131 82 4 13 139 17 141 2.17e-12 64.3
MS.gene013174.t1 MTR_7g083370 30.935 139 82 6 7 139 3 133 1.09e-11 61.2
MS.gene013174.t1 MTR_7g083360 29.197 137 87 4 7 139 3 133 1.09e-11 61.6
MS.gene013174.t1 MTR_4g078875 29.703 202 106 9 9 189 43 229 5.80e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013174.t1 AT5G13180 51.818 220 79 5 1 203 1 210 2.40e-69 213
MS.gene013174.t1 AT2G33480 56.571 175 62 4 1 174 1 162 3.84e-64 201
MS.gene013174.t1 AT2G33480 56.571 175 64 4 1 174 1 164 4.74e-64 201
MS.gene013174.t1 AT3G04070 48.864 176 78 4 8 175 4 175 4.74e-53 175
MS.gene013174.t1 AT1G01720 39.381 226 124 5 13 236 6 220 8.67e-52 170
MS.gene013174.t1 AT1G77450 46.032 189 85 5 6 185 1 181 3.34e-51 167
MS.gene013174.t1 AT1G61110 48.333 180 72 4 7 173 9 180 1.49e-49 165
MS.gene013174.t1 AT3G04070 45.312 192 77 5 8 175 4 191 1.63e-49 166
MS.gene013174.t1 AT1G69490 46.857 175 81 4 12 180 7 175 1.89e-49 163
MS.gene013174.t1 AT4G27410 46.541 159 73 3 14 170 14 162 1.44e-46 157
MS.gene013174.t1 AT5G08790 48.750 160 74 3 14 171 7 160 2.69e-46 155
MS.gene013174.t1 AT5G39610 48.148 162 70 5 14 171 20 171 4.03e-46 155
MS.gene013174.t1 AT3G15510 49.689 161 70 5 18 170 21 178 4.79e-46 157
MS.gene013174.t1 AT1G52890 47.531 162 73 3 14 173 14 165 1.80e-45 154
MS.gene013174.t1 AT4G17980 46.061 165 79 3 10 170 2 160 1.92e-45 152
MS.gene013174.t1 AT3G15500 44.199 181 85 4 14 192 14 180 2.13e-45 154
MS.gene013174.t1 AT4G17980 46.061 165 79 3 10 170 2 160 6.41e-45 152
MS.gene013174.t1 AT1G52880 48.750 160 78 2 18 173 21 180 8.53e-45 152
MS.gene013174.t1 AT5G46590 45.000 180 79 4 10 185 2 165 1.45e-44 151
MS.gene013174.t1 AT1G12260 43.605 172 80 3 9 175 2 161 2.06e-44 152
MS.gene013174.t1 AT5G63790 46.875 160 77 3 14 171 50 203 4.42e-44 150
MS.gene013174.t1 AT4G27410 43.182 176 71 4 14 170 14 179 4.89e-44 150
MS.gene013174.t1 AT5G63790 46.875 160 77 3 14 171 60 213 5.56e-44 150
MS.gene013174.t1 AT1G12260 43.605 172 80 3 9 175 2 161 7.24e-44 152
MS.gene013174.t1 AT5G07680 45.912 159 76 4 14 170 3 153 7.28e-44 150
MS.gene013174.t1 AT5G07680 45.912 159 76 4 14 170 17 167 8.64e-44 150
MS.gene013174.t1 AT5G39820 44.767 172 76 4 16 170 22 191 1.19e-43 150
MS.gene013174.t1 AT5G61430 45.912 159 76 4 14 170 16 166 1.59e-43 150
MS.gene013174.t1 AT1G33060 46.584 161 72 3 14 170 24 174 1.70e-43 155
MS.gene013174.t1 AT1G33060 46.584 161 72 3 14 170 24 174 1.85e-43 155
MS.gene013174.t1 AT5G66300 40.889 225 110 9 14 231 12 220 2.50e-43 148
MS.gene013174.t1 AT1G65910 47.205 161 71 3 14 170 6 156 3.95e-43 154
MS.gene013174.t1 AT5G62380 42.353 170 81 3 11 175 4 161 5.43e-43 149
MS.gene013174.t1 AT5G62380 42.353 170 81 3 11 175 4 161 5.43e-43 149
MS.gene013174.t1 AT1G62700 44.643 168 76 3 9 171 2 157 5.56e-43 150
MS.gene013174.t1 AT1G62700 44.643 168 76 3 9 171 2 157 5.56e-43 150
MS.gene013174.t1 AT4G36160 46.626 163 70 4 14 171 14 164 7.98e-43 149
MS.gene013174.t1 AT5G46590 48.052 154 71 3 10 159 2 150 8.04e-43 146
MS.gene013174.t1 AT4G36160 46.626 163 70 4 14 171 10 160 9.78e-43 149
MS.gene013174.t1 AT4G36160 46.626 163 70 4 14 171 10 160 9.78e-43 149
MS.gene013174.t1 AT2G46770 43.182 176 82 5 9 171 11 181 3.72e-42 147
MS.gene013174.t1 AT2G18060 46.012 163 71 4 14 171 9 159 4.60e-42 147
MS.gene013174.t1 AT2G18060 46.012 163 71 4 14 171 9 159 4.60e-42 147
MS.gene013174.t1 AT4G35580 44.643 168 75 4 14 175 9 164 4.75e-42 150
MS.gene013174.t1 AT3G04060 44.444 162 81 4 11 170 17 171 4.95e-42 146
MS.gene013174.t1 AT4G35580 44.643 168 75 4 14 175 9 164 4.96e-42 150
MS.gene013174.t1 AT3G10490 45.062 162 74 4 14 170 27 178 5.79e-42 143
MS.gene013174.t1 AT4G35580 46.012 163 70 4 14 170 9 159 6.35e-42 149
MS.gene013174.t1 AT3G10480 44.720 161 75 3 14 170 27 177 9.86e-42 147
MS.gene013174.t1 AT1G79580 44.970 169 72 5 10 171 13 167 1.28e-41 145
MS.gene013174.t1 AT1G79580 44.970 169 72 5 10 171 13 167 1.28e-41 145
MS.gene013174.t1 AT1G79580 44.970 169 72 5 10 171 13 167 1.28e-41 145
MS.gene013174.t1 AT1G79580 44.970 169 72 5 10 171 13 167 1.28e-41 145
MS.gene013174.t1 AT1G79580 44.970 169 72 5 10 171 13 167 1.28e-41 145
MS.gene013174.t1 AT3G61910 42.458 179 87 6 4 170 1 175 2.30e-41 144
MS.gene013174.t1 AT3G10480 45.679 162 73 4 14 170 27 178 2.56e-41 146
MS.gene013174.t1 AT1G33280 44.172 163 73 3 14 171 8 157 2.74e-41 143
MS.gene013174.t1 AT5G17260 45.679 162 73 4 14 170 6 157 2.94e-41 147
MS.gene013174.t1 AT1G32770 43.017 179 87 5 3 171 5 178 4.58e-41 144
MS.gene013174.t1 AT1G71930 44.643 168 76 4 12 174 7 162 5.55e-41 143
MS.gene013174.t1 AT1G71930 44.643 168 76 4 12 174 7 162 5.55e-41 143
MS.gene013174.t1 AT4G10350 43.558 163 77 3 14 171 9 161 7.44e-41 143
MS.gene013174.t1 AT3G03200 45.062 162 74 4 14 170 6 157 1.01e-40 145
MS.gene013174.t1 AT3G18400 44.025 159 76 4 14 170 5 152 2.64e-40 141
MS.gene013174.t1 AT1G32510 44.186 172 84 3 12 176 4 170 3.27e-40 140
MS.gene013174.t1 AT3G10490 45.062 162 74 4 14 170 27 178 3.70e-40 144
MS.gene013174.t1 AT1G26870 45.062 162 82 3 14 170 16 175 4.77e-40 142
MS.gene013174.t1 AT3G17730 44.099 161 76 4 14 170 6 156 5.09e-40 138
MS.gene013174.t1 AT3G29035 49.231 130 60 2 14 141 24 149 6.49e-40 140
MS.gene013174.t1 AT2G24430 42.138 159 81 3 14 170 16 165 7.43e-40 140
MS.gene013174.t1 AT2G24430 42.138 159 81 3 14 170 16 165 7.43e-40 140
MS.gene013174.t1 AT5G24590 37.069 232 127 7 11 235 10 229 1.13e-39 142
MS.gene013174.t1 AT1G76420 42.857 168 79 5 14 175 22 178 1.60e-39 139
MS.gene013174.t1 AT2G43000 47.134 157 72 5 16 170 20 167 1.62e-39 138
MS.gene013174.t1 AT5G18270 42.012 169 89 4 4 170 11 172 2.30e-39 139
MS.gene013174.t1 AT5G18270 42.012 169 89 4 4 170 11 172 2.67e-39 139
MS.gene013174.t1 AT3G10500 42.373 177 84 4 8 178 3 167 2.31e-38 140
MS.gene013174.t1 AT5G53950 42.767 159 83 4 14 170 17 169 4.00e-38 137
MS.gene013174.t1 AT2G17040 41.875 160 79 4 16 173 8 155 6.17e-38 134
MS.gene013174.t1 AT1G54330 40.994 161 78 3 14 170 6 153 7.32e-38 134
MS.gene013174.t1 AT2G02450 42.683 164 79 5 16 177 53 203 1.14e-37 135
MS.gene013174.t1 AT2G02450 42.683 164 79 5 16 177 53 203 2.06e-37 135
MS.gene013174.t1 AT3G12977 40.625 160 82 4 14 170 18 167 3.97e-37 132
MS.gene013174.t1 AT3G15170 38.323 167 83 4 12 170 18 172 7.47e-37 132
MS.gene013174.t1 AT1G56010 38.690 168 91 5 12 175 17 176 1.21e-36 132
MS.gene013174.t1 AT3G10480 38.974 195 71 5 14 170 27 211 2.84e-36 134
MS.gene013174.t1 AT1G34190 40.719 167 85 3 16 178 18 174 6.27e-36 134
MS.gene013174.t1 AT3G12910 42.073 164 85 4 16 170 23 185 1.01e-35 129
MS.gene013174.t1 AT3G49530 38.889 162 86 3 14 171 13 165 1.22e-35 130
MS.gene013174.t1 AT5G04410 38.857 175 93 3 8 178 3 167 1.91e-35 132
MS.gene013174.t1 AT3G49530 38.889 162 86 3 14 171 13 165 2.79e-35 130
MS.gene013174.t1 AT1G34180 40.120 167 86 3 16 178 18 174 5.93e-35 129
MS.gene013174.t1 AT1G34180 40.120 167 86 3 16 178 18 174 1.68e-34 130
MS.gene013174.t1 AT4G28530 40.761 184 79 6 7 172 3 174 4.92e-34 125
MS.gene013174.t1 AT1G34180 37.989 179 85 3 16 178 18 186 5.61e-34 127
MS.gene013174.t1 AT1G34180 37.989 179 85 3 16 178 18 186 1.48e-33 127
MS.gene013174.t1 AT5G09330 40.462 173 89 3 10 178 2 164 1.54e-33 126
MS.gene013174.t1 AT5G09330 40.462 173 89 3 10 178 2 164 1.54e-33 126
MS.gene013174.t1 AT5G09330 40.462 173 89 3 10 178 2 164 1.54e-33 126
MS.gene013174.t1 AT5G09330 40.462 173 89 3 10 178 2 164 1.54e-33 126
MS.gene013174.t1 AT5G09330 40.462 173 89 3 10 178 2 164 1.54e-33 126
MS.gene013174.t1 AT2G33480 50.862 116 46 3 59 174 3 107 3.23e-33 120
MS.gene013174.t1 AT5G64060 38.182 165 88 3 10 170 2 156 1.49e-31 119
MS.gene013174.t1 AT3G44290 30.453 243 148 5 7 240 7 237 1.24e-30 116
MS.gene013174.t1 AT3G44290 35.897 156 90 3 7 156 7 158 1.83e-30 113
MS.gene013174.t1 AT5G04395 39.583 144 71 2 14 142 28 170 2.41e-30 111
MS.gene013174.t1 AT2G27300 40.602 133 72 2 10 139 10 138 9.24e-30 114
MS.gene013174.t1 AT5G50820 36.571 175 100 5 5 176 7 173 9.81e-30 110
MS.gene013174.t1 AT5G22290 31.356 236 136 7 16 240 23 243 2.48e-29 112
MS.gene013174.t1 AT1G32870 40.909 176 88 5 7 178 5 168 1.69e-27 110
MS.gene013174.t1 AT1G32870 40.909 176 88 5 7 178 5 168 1.76e-27 110
MS.gene013174.t1 AT1G32870 40.909 176 88 5 7 178 41 204 2.03e-27 110
MS.gene013174.t1 AT5G64530 35.260 173 90 5 14 177 3 162 9.84e-27 102
MS.gene013174.t1 AT4G01520 43.796 137 68 5 15 144 5 139 1.02e-26 105
MS.gene013174.t1 AT4G01550 40.881 159 77 5 17 170 7 153 1.63e-26 107
MS.gene013174.t1 AT4G01540 43.704 135 67 5 17 144 7 139 2.90e-26 105
MS.gene013174.t1 AT4G01540 43.704 135 67 5 17 144 7 139 4.38e-26 105
MS.gene013174.t1 AT4G01540 43.704 135 67 5 17 144 7 139 4.95e-26 105
MS.gene013174.t1 AT4G01540 43.704 135 67 5 17 144 7 139 6.49e-26 104
MS.gene013174.t1 AT5G64530 41.860 129 61 4 14 141 3 118 2.38e-25 97.8
MS.gene013174.t1 AT5G61430 45.794 107 50 3 64 170 5 103 2.54e-25 100
MS.gene013174.t1 AT4G10350 43.243 111 53 2 61 171 14 114 3.36e-24 98.2
MS.gene013174.t1 AT3G44350 35.758 165 91 5 17 174 8 164 4.04e-24 97.1
MS.gene013174.t1 AT1G02230 39.456 147 76 5 15 155 4 143 5.21e-24 99.0
MS.gene013174.t1 AT3G12977 43.119 109 51 3 63 170 16 114 5.59e-24 96.3
MS.gene013174.t1 AT1G56010 40.708 113 58 3 64 175 5 109 6.96e-24 96.7
MS.gene013174.t1 AT5G14000 30.994 171 103 3 6 174 7 164 1.32e-23 94.7
MS.gene013174.t1 AT5G22380 32.474 194 112 6 17 198 8 194 3.79e-23 94.4
MS.gene013174.t1 AT5G14000 33.562 146 91 2 7 150 8 149 3.96e-23 92.0
MS.gene013174.t1 AT3G44350 36.486 148 82 4 17 157 8 150 6.76e-23 91.7
MS.gene013174.t1 AT3G10490 47.727 88 35 3 84 170 1 78 1.11e-19 87.0
MS.gene013174.t1 AT3G10490 47.727 88 35 3 84 170 1 78 1.11e-19 87.0
MS.gene013174.t1 AT1G02250 33.962 159 85 5 15 167 4 148 3.48e-19 85.5
MS.gene013174.t1 AT1G01010 38.806 134 68 5 17 139 6 136 1.56e-18 84.3
MS.gene013174.t1 AT2G43000 48.936 94 39 4 77 170 5 89 1.79e-18 80.9
MS.gene013174.t1 AT3G04420 37.681 138 70 5 15 143 4 134 3.29e-18 82.0
MS.gene013174.t1 AT3G04420 37.681 138 70 5 15 143 4 134 4.21e-18 82.4
MS.gene013174.t1 AT2G18060 45.122 82 33 2 90 171 2 71 1.66e-16 77.0
MS.gene013174.t1 AT4G28530 41.228 114 49 3 7 102 3 116 2.40e-16 77.0
MS.gene013174.t1 AT3G56530 33.333 162 87 6 14 168 52 199 4.59e-16 76.3
MS.gene013174.t1 AT1G02220 36.090 133 68 5 15 139 4 127 5.29e-14 70.9
MS.gene013174.t1 AT5G50820 31.304 115 73 2 64 176 14 124 2.41e-11 60.5
MS.gene013174.t1 AT1G28470 30.636 173 87 9 14 168 77 234 5.68e-11 61.6
MS.gene013174.t1 AT3G55210 27.374 179 94 7 14 173 11 172 7.16e-11 61.2
MS.gene013174.t1 AT3G04430 29.851 134 78 4 20 140 6 136 8.27e-11 60.1

Find 38 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGAGTGCTGTTTCGATACT+TGG 0.265925 3.3:+81299626 None:intergenic
GAACAACCAACTCTGGTTAT+TGG 0.282547 3.3:-81299596 MS.gene013174:CDS
CAAAACTATGAAAACGAGAT+AGG 0.366889 3.3:-81299263 MS.gene013174:CDS
CTCATAAAATCAAAGAATCT+TGG 0.393607 3.3:+81299134 None:intergenic
CAATGAGTTCGAGATCCATT+TGG 0.411374 3.3:+81299474 None:intergenic
ATTAGTATTCATCACCGTAT+TGG 0.436278 3.3:+81299172 None:intergenic
AATTGAAGCAGGCAATTGAT+AGG 0.447214 3.3:+81299889 None:intergenic
AAAAGAAGTAATATAGAAAA+CGG 0.451498 3.3:-81299209 MS.gene013174:CDS
ATGAAAACGAGATAGGGAAC+TGG 0.461427 3.3:-81299256 MS.gene013174:CDS
TCTGGTTATTGGAAGGCAAC+AGG 0.467118 3.3:-81299585 MS.gene013174:CDS
AGAAACTACTGCTTGCAATC+AGG 0.467745 3.3:-81299421 MS.gene013174:intron
TATCAAGGAAAATCTCCAAA+TGG 0.482794 3.3:-81299489 MS.gene013174:CDS
CAGTAGTTTCTAAGCTAACT+AGG 0.483639 3.3:+81299433 None:intergenic
CTAAGTACCTGGCAAATCCC+AGG 0.494406 3.3:+81299835 None:intergenic
CAAATGGATCTCGAACTCAT+TGG 0.497017 3.3:-81299473 MS.gene013174:CDS
GTTTCTTCATCACTAAGTAA+TGG 0.512585 3.3:-81299543 MS.gene013174:CDS
ATCTCAGGAATAATTGAAGC+AGG 0.517678 3.3:+81299878 None:intergenic
TGCCTTCCAATAACCAGAGT+TGG 0.519375 3.3:+81299590 None:intergenic
TACTTGCAGACATTGATCTC+AGG 0.525771 3.3:+81299863 None:intergenic
TCACTAAGTAATGGAATCGC+GGG 0.532891 3.3:-81299534 MS.gene013174:CDS
TATGATCCCTGGGATTTGCC+AGG 0.534942 3.3:-81299842 MS.gene013174:intron
AAAACTATGAAAACGAGATA+GGG 0.543012 3.3:-81299262 MS.gene013174:CDS
ATGTCTGCAAGTATGATCCC+TGG 0.565949 3.3:-81299853 MS.gene013174:CDS
AAGACGAGCTCTTCGTCCGT+TGG 0.567604 3.3:+81299938 None:intergenic
GGTGTAAGCAGATTGCCTCC+TGG 0.568317 3.3:-81299974 MS.gene013174:CDS
TAAGTATTTCTTCAGCAGCA+AGG 0.575313 3.3:-81299652 MS.gene013174:CDS
ATGAACAGAACAACCAACTC+TGG 0.580063 3.3:-81299603 MS.gene013174:CDS
TGTCTGCAAGTATGATCCCT+GGG 0.580596 3.3:-81299852 MS.gene013174:CDS
AACCAACTCTGGTTATTGGA+AGG 0.581092 3.3:-81299592 MS.gene013174:CDS
GAGGGTACACAACTCAGCTC+CGG 0.583774 3.3:-81299114 MS.gene013174:CDS
ATCACTAAGTAATGGAATCG+CGG 0.598075 3.3:-81299535 MS.gene013174:CDS
GTCTTGTTCAAGTTCGAGTG+AGG 0.604087 3.3:-81299063 MS.gene013174:CDS
GGTGATGAATACTAATGTTG+AGG 0.614852 3.3:-81299165 MS.gene013174:CDS
TAAGTACCTGGCAAATCCCA+GGG 0.629531 3.3:+81299836 None:intergenic
TGAAAACGAGATAGGGAACT+GGG 0.631419 3.3:-81299255 MS.gene013174:CDS
TGTGTGTAATTAGGAAATTG+TGG 0.633496 3.3:-81299684 MS.gene013174:intron
TTACATGATGAAGACCAATA+CGG 0.642498 3.3:-81299186 MS.gene013174:CDS
TCTTCATCAGAAGAAAGATG+CGG 0.710283 3.3:-81299038 MS.gene013174:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACCAAATTATTTATATA+TGG + chr3.3:81299301-81299320 None:intergenic 10.0%
!! AAAAGAAGTAATATAGAAAA+CGG - chr3.3:81299808-81299827 MS.gene013174:intron 15.0%
!! ATAGCCATATATAAATAATT+TGG - chr3.3:81299294-81299313 MS.gene013174:intron 15.0%
!! AGGACTATATATATGATTAA+TGG + chr3.3:81299633-81299652 None:intergenic 20.0%
!!! AAAAGTCTTGTATTTTATCA+AGG - chr3.3:81299513-81299532 MS.gene013174:CDS 20.0%
!!! AAGATTCTTTGATTTTATGA+GGG - chr3.3:81299885-81299904 MS.gene013174:CDS 20.0%
! AAAACTATGAAAACGAGATA+GGG - chr3.3:81299755-81299774 MS.gene013174:intron 25.0%
! CTCATAAAATCAAAGAATCT+TGG + chr3.3:81299886-81299905 None:intergenic 25.0%
!! AAGCTGAATTTTGTGAAAAA+TGG - chr3.3:81299022-81299041 MS.gene013174:CDS 25.0%
!! TTTTATGTGTGTGTGTAATT+AGG - chr3.3:81299324-81299343 MS.gene013174:intron 25.0%
!!! CAAGATTCTTTGATTTTATG+AGG - chr3.3:81299884-81299903 MS.gene013174:CDS 25.0%
ATCTAGAAAAATGAGCAGTA+GGG + chr3.3:81299930-81299949 None:intergenic 30.0%
ATGCCTTAACTGTTAAATGT+TGG - chr3.3:81299722-81299741 MS.gene013174:intron 30.0%
ATTAGTATTCATCACCGTAT+TGG + chr3.3:81299848-81299867 None:intergenic 30.0%
CAAAACTATGAAAACGAGAT+AGG - chr3.3:81299754-81299773 MS.gene013174:intron 30.0%
GTTTCTTCATCACTAAGTAA+TGG - chr3.3:81299474-81299493 MS.gene013174:CDS 30.0%
TATCAAGGAAAATCTCCAAA+TGG - chr3.3:81299528-81299547 MS.gene013174:CDS 30.0%
TGCCTTAACTGTTAAATGTT+GGG - chr3.3:81299723-81299742 MS.gene013174:intron 30.0%
TGTGTGTAATTAGGAAATTG+TGG - chr3.3:81299333-81299352 MS.gene013174:intron 30.0%
TTACATGATGAAGACCAATA+CGG - chr3.3:81299831-81299850 MS.gene013174:intron 30.0%
!! TTGTCACTTTGGTTGTAAAA+AGG + chr3.3:81299653-81299672 None:intergenic 30.0%
AATTGAAGCAGGCAATTGAT+AGG + chr3.3:81299131-81299150 None:intergenic 35.0%
ATCTCAGGAATAATTGAAGC+AGG + chr3.3:81299142-81299161 None:intergenic 35.0%
CACCCAACATTTAACAGTTA+AGG + chr3.3:81299728-81299747 None:intergenic 35.0%
CAGTAGTTTCTAAGCTAACT+AGG + chr3.3:81299587-81299606 None:intergenic 35.0%
GATCTAGAAAAATGAGCAGT+AGG + chr3.3:81299931-81299950 None:intergenic 35.0%
GGTGATGAATACTAATGTTG+AGG - chr3.3:81299852-81299871 MS.gene013174:CDS 35.0%
TAAGTATTTCTTCAGCAGCA+AGG - chr3.3:81299365-81299384 MS.gene013174:intron 35.0%
TCTTCATCAGAAGAAAGATG+CGG - chr3.3:81299979-81299998 MS.gene013174:CDS 35.0%
! ATCACTAAGTAATGGAATCG+CGG - chr3.3:81299482-81299501 MS.gene013174:CDS 35.0%
!!! TGGTTTTTGTTTTCAGCCAA+CGG - chr3.3:81299063-81299082 MS.gene013174:CDS 35.0%
AACCAACTCTGGTTATTGGA+AGG - chr3.3:81299425-81299444 MS.gene013174:CDS 40.0%
AGAAACTACTGCTTGCAATC+AGG - chr3.3:81299596-81299615 MS.gene013174:CDS 40.0%
ATGAAAACGAGATAGGGAAC+TGG - chr3.3:81299761-81299780 MS.gene013174:intron 40.0%
ATGAACAGAACAACCAACTC+TGG - chr3.3:81299414-81299433 MS.gene013174:intron 40.0%
CAAAGTGACAATGACCGAAT+TGG - chr3.3:81299662-81299681 MS.gene013174:CDS 40.0%
CAAATGGATCTCGAACTCAT+TGG - chr3.3:81299544-81299563 MS.gene013174:CDS 40.0%
CAATGAGTTCGAGATCCATT+TGG + chr3.3:81299546-81299565 None:intergenic 40.0%
GAACAACCAACTCTGGTTAT+TGG - chr3.3:81299421-81299440 MS.gene013174:intron 40.0%
GTTGGCTGAAAACAAAAACC+AGG + chr3.3:81299064-81299083 None:intergenic 40.0%
TACTTGCAGACATTGATCTC+AGG + chr3.3:81299157-81299176 None:intergenic 40.0%
TGAAAACGAGATAGGGAACT+GGG - chr3.3:81299762-81299781 MS.gene013174:intron 40.0%
! CAATTCGGTCATTGTCACTT+TGG + chr3.3:81299664-81299683 None:intergenic 40.0%
! TCACTAAGTAATGGAATCGC+GGG - chr3.3:81299483-81299502 MS.gene013174:CDS 40.0%
ATGTCTGCAAGTATGATCCC+TGG - chr3.3:81299164-81299183 MS.gene013174:CDS 45.0%
GAAAAATGAGCAGTAGGGTC+CGG + chr3.3:81299925-81299944 None:intergenic 45.0%
GGCTGAAAACAAAAACCAGG+AGG + chr3.3:81299061-81299080 None:intergenic 45.0%
TAAGTACCTGGCAAATCCCA+GGG + chr3.3:81299184-81299203 None:intergenic 45.0%
TCTGGTTATTGGAAGGCAAC+AGG - chr3.3:81299432-81299451 MS.gene013174:CDS 45.0%
TGCCACGATCTACTCCAATT+CGG + chr3.3:81299679-81299698 None:intergenic 45.0%
TGCCAGGTACTTAGCAAACT+AGG - chr3.3:81299191-81299210 MS.gene013174:CDS 45.0%
TGCCTTCCAATAACCAGAGT+TGG + chr3.3:81299430-81299449 None:intergenic 45.0%
TGTCTGCAAGTATGATCCCT+GGG - chr3.3:81299165-81299184 MS.gene013174:CDS 45.0%
! GTCTTGTTCAAGTTCGAGTG+AGG - chr3.3:81299954-81299973 MS.gene013174:CDS 45.0%
!! AGCCTAGTTTGCTAAGTACC+TGG + chr3.3:81299196-81299215 None:intergenic 45.0%
CTAAGTACCTGGCAAATCCC+AGG + chr3.3:81299185-81299204 None:intergenic 50.0%
GACCGAATTGGAGTAGATCG+TGG - chr3.3:81299674-81299693 MS.gene013174:CDS 50.0%
TATGATCCCTGGGATTTGCC+AGG - chr3.3:81299175-81299194 MS.gene013174:CDS 50.0%
!! GCGAGTGCTGTTTCGATACT+TGG + chr3.3:81299394-81299413 None:intergenic 50.0%
AAGACGAGCTCTTCGTCCGT+TGG + chr3.3:81299082-81299101 None:intergenic 55.0%
GGTGTAAGCAGATTGCCTCC+TGG - chr3.3:81299043-81299062 MS.gene013174:CDS 55.0%
! GAGGGTACACAACTCAGCTC+CGG - chr3.3:81299903-81299922 MS.gene013174:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 81299016 81300023 81299016 ID=MS.gene013174
chr3.3 mRNA 81299016 81300023 81299016 ID=MS.gene013174.t1;Parent=MS.gene013174
chr3.3 exon 81299843 81300023 81299843 ID=MS.gene013174.t1.exon1;Parent=MS.gene013174.t1
chr3.3 CDS 81299843 81300023 81299843 ID=cds.MS.gene013174.t1;Parent=MS.gene013174.t1
chr3.3 exon 81299422 81299693 81299422 ID=MS.gene013174.t1.exon2;Parent=MS.gene013174.t1
chr3.3 CDS 81299422 81299693 81299422 ID=cds.MS.gene013174.t1;Parent=MS.gene013174.t1
chr3.3 exon 81299016 81299288 81299016 ID=MS.gene013174.t1.exon3;Parent=MS.gene013174.t1
chr3.3 CDS 81299016 81299288 81299016 ID=cds.MS.gene013174.t1;Parent=MS.gene013174.t1
Gene Sequence

>MS.gene013174

ATGGAAAAGCTGAATTTTGTGAAAAATGGTGTAAGCAGATTGCCTCCTGGTTTTTGTTTTCAGCCAACGGACGAAGAGCTCGTCTTTCATTACTTGAAATGCAAGATCTTCTCCTATCAATTGCCTGCTTCAATTATTCCTGAGATCAATGTCTGCAAGTATGATCCCTGGGATTTGCCAGGTACTTAGCAAACTAGGCTCAACACAATCATGTTACTTTTGTGCTCTATAATATAATGTGATAGATCATAGATGTTAATACAAAAATGATTTAATATATAGCCATATATAAATAATTTGGTTAAATATTTTATGTGTGTGTGTAATTAGGAAATTGTGGTGAGCAAGATAAGTATTTCTTCAGCAGCAAGGAAGCCAAGTATCGAAACAGCACTCGCATGAACAGAACAACCAACTCTGGTTATTGGAAGGCAACAGGATCAGACAAGAAAGTTAGTGTTTCTTCATCACTAAGTAATGGAATCGCGGGAATAAGAAAAAGTCTTGTATTTTATCAAGGAAAATCTCCAAATGGATCTCGAACTCATTGGATCATGCATGAATATCGCCTAGTTAGCTTAGAAACTACTGCTTGCAATCAGGTAATTAATATTCCATTAATCATATATATAGTCCTTTTTACAACCAAAGTGACAATGACCGAATTGGAGTAGATCGTGGCAGCAAAGTCACTCTATCACTTATAATGCCTTAACTGTTAAATGTTGGGTGCAGATGCAAAACTATGAAAACGAGATAGGGAACTGGGTTTTGTGTCGTATATTCACGAAGAAAAGAAGTAATATAGAAAACGGTTACATGATGAAGACCAATACGGTGATGAATACTAATGTTGAGGTAGCTCAGCCAAGATTCTTTGATTTTATGAGGGTACACAACTCAGCTCCGGACCCTACTGCTCATTTTTCTAGATCATCGTCTTGTTCAAGTTCGAGTGAGGTCTCTTCATCAGAAGAAAGATGCGGCGATATATATACTGATTTTTAA
Protein sequence

>MS.gene013174.t1

MEKLNFVKNGVSRLPPGFCFQPTDEELVFHYLKCKIFSYQLPASIIPEINVCKYDPWDLPGNCGEQDKYFFSSKEAKYRNSTRMNRTTNSGYWKATGSDKKVSVSSSLSNGIAGIRKSLVFYQGKSPNGSRTHWIMHEYRLVSLETTACNQMQNYENEIGNWVLCRIFTKKRSNIENGYMMKTNTVMNTNVEVAQPRFFDFMRVHNSAPDPTAHFSRSSSCSSSSEVSSSEERCGDIYTDF