Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013176.t1 | AES73017.1 | 95.1 | 284 | 14 | 0 | 1 | 284 | 29 | 312 | 1.10E-157 | 565.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013176.t1 | Q8L3W1 | 27.7 | 329 | 166 | 8 | 1 | 271 | 22 | 336 | 2.4e-23 | 110.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013176.t1 | G7J3B6 | 95.1 | 284 | 14 | 0 | 1 | 284 | 29 | 312 | 8.2e-158 | 565.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013176.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013176.t1 | MTR_3g098790 | 95.070 | 284 | 14 | 0 | 1 | 284 | 29 | 312 | 0.0 | 568 |
| MS.gene013176.t1 | MTR_7g050710 | 66.438 | 292 | 90 | 2 | 1 | 284 | 29 | 320 | 8.58e-139 | 395 |
| MS.gene013176.t1 | MTR_7g050580 | 68.385 | 291 | 83 | 2 | 1 | 291 | 29 | 310 | 1.61e-137 | 391 |
| MS.gene013176.t1 | MTR_7g050590 | 66.667 | 294 | 86 | 6 | 1 | 284 | 2 | 293 | 1.64e-131 | 375 |
| MS.gene013176.t1 | MTR_7g050560 | 61.409 | 298 | 92 | 5 | 1 | 291 | 29 | 310 | 5.42e-122 | 352 |
| MS.gene013176.t1 | MTR_7g050720 | 60.959 | 292 | 95 | 8 | 1 | 273 | 26 | 317 | 2.44e-111 | 325 |
| MS.gene013176.t1 | MTR_1g035460 | 35.099 | 302 | 149 | 7 | 1 | 271 | 2 | 287 | 2.74e-47 | 163 |
| MS.gene013176.t1 | MTR_1g108780 | 33.677 | 291 | 160 | 7 | 1 | 271 | 13 | 290 | 3.14e-46 | 162 |
| MS.gene013176.t1 | MTR_8g103940 | 34.589 | 292 | 155 | 9 | 1 | 271 | 55 | 331 | 1.23e-42 | 153 |
| MS.gene013176.t1 | MTR_5g044670 | 30.928 | 291 | 178 | 7 | 1 | 279 | 32 | 311 | 7.90e-38 | 136 |
| MS.gene013176.t1 | MTR_7g050640 | 71.795 | 78 | 22 | 0 | 1 | 78 | 29 | 106 | 6.72e-36 | 125 |
| MS.gene013176.t1 | MTR_3g061320 | 29.682 | 283 | 157 | 8 | 1 | 270 | 26 | 279 | 2.14e-31 | 118 |
| MS.gene013176.t1 | MTR_3g061350 | 30.072 | 276 | 170 | 6 | 1 | 270 | 26 | 284 | 1.42e-29 | 114 |
| MS.gene013176.t1 | MTR_3g061370 | 30.634 | 284 | 158 | 11 | 1 | 270 | 23 | 281 | 3.54e-28 | 110 |
| MS.gene013176.t1 | MTR_3g061340 | 26.829 | 287 | 155 | 8 | 1 | 270 | 26 | 274 | 5.12e-26 | 103 |
| MS.gene013176.t1 | MTR_1g035620 | 28.676 | 272 | 172 | 8 | 1 | 269 | 25 | 277 | 1.82e-24 | 102 |
| MS.gene013176.t1 | MTR_3g061310 | 27.473 | 273 | 182 | 8 | 1 | 270 | 26 | 285 | 3.42e-24 | 99.4 |
| MS.gene013176.t1 | MTR_3g005490 | 26.182 | 275 | 153 | 6 | 1 | 274 | 37 | 262 | 3.43e-24 | 99.0 |
| MS.gene013176.t1 | MTR_1g035640 | 29.749 | 279 | 165 | 7 | 1 | 269 | 21 | 278 | 3.00e-23 | 99.4 |
| MS.gene013176.t1 | MTR_1g050845 | 30.545 | 275 | 151 | 10 | 1 | 269 | 25 | 265 | 4.22e-23 | 99.8 |
| MS.gene013176.t1 | MTR_1g035570 | 29.930 | 284 | 169 | 8 | 1 | 271 | 21 | 287 | 8.03e-23 | 97.4 |
| MS.gene013176.t1 | MTR_3g005480 | 27.338 | 278 | 147 | 9 | 1 | 274 | 37 | 263 | 1.75e-22 | 94.4 |
| MS.gene013176.t1 | MTR_1g021400 | 27.879 | 330 | 169 | 12 | 1 | 279 | 46 | 357 | 1.84e-22 | 96.3 |
| MS.gene013176.t1 | MTR_6g043890 | 30.612 | 245 | 131 | 7 | 34 | 257 | 65 | 291 | 6.77e-22 | 94.4 |
| MS.gene013176.t1 | MTR_3g005420 | 27.737 | 274 | 159 | 8 | 1 | 274 | 305 | 539 | 1.58e-21 | 94.7 |
| MS.gene013176.t1 | MTR_3g061330 | 47.561 | 82 | 43 | 0 | 1 | 82 | 26 | 107 | 3.56e-21 | 90.5 |
| MS.gene013176.t1 | MTR_5g070440 | 26.354 | 277 | 159 | 8 | 1 | 274 | 37 | 271 | 4.89e-21 | 90.5 |
| MS.gene013176.t1 | MTR_1g021360 | 27.211 | 294 | 181 | 9 | 1 | 278 | 198 | 474 | 1.06e-20 | 92.0 |
| MS.gene013176.t1 | MTR_1g021410 | 25.078 | 319 | 176 | 10 | 1 | 270 | 38 | 342 | 2.40e-20 | 90.1 |
| MS.gene013176.t1 | MTR_3g005495 | 29.070 | 258 | 128 | 8 | 1 | 258 | 259 | 461 | 1.07e-18 | 86.3 |
| MS.gene013176.t1 | MTR_3g005495 | 31.967 | 122 | 76 | 2 | 1 | 115 | 29 | 150 | 2.05e-15 | 76.6 |
| MS.gene013176.t1 | MTR_1g035520 | 27.597 | 308 | 171 | 12 | 1 | 269 | 88 | 382 | 1.10e-18 | 85.5 |
| MS.gene013176.t1 | MTR_1g021440 | 24.926 | 337 | 179 | 10 | 1 | 276 | 38 | 361 | 1.49e-18 | 85.1 |
| MS.gene013176.t1 | MTR_6g061070 | 27.027 | 296 | 182 | 10 | 1 | 270 | 34 | 321 | 1.54e-18 | 85.9 |
| MS.gene013176.t1 | MTR_3g061290 | 45.122 | 82 | 45 | 0 | 1 | 82 | 26 | 107 | 1.87e-18 | 82.0 |
| MS.gene013176.t1 | MTR_4g068320 | 37.795 | 127 | 71 | 3 | 162 | 288 | 285 | 403 | 1.95e-18 | 85.1 |
| MS.gene013176.t1 | MTR_4g068320 | 38.542 | 96 | 57 | 1 | 1 | 94 | 22 | 117 | 4.60e-15 | 75.5 |
| MS.gene013176.t1 | MTR_4g119990 | 28.819 | 288 | 180 | 10 | 1 | 270 | 31 | 311 | 2.19e-18 | 84.7 |
| MS.gene013176.t1 | MTR_3g005460 | 25.180 | 278 | 169 | 7 | 1 | 274 | 278 | 520 | 4.16e-18 | 84.7 |
| MS.gene013176.t1 | MTR_3g005460 | 31.405 | 121 | 80 | 2 | 1 | 119 | 41 | 160 | 1.05e-14 | 74.3 |
| MS.gene013176.t1 | MTR_1g034240 | 33.784 | 148 | 88 | 3 | 147 | 290 | 274 | 415 | 1.17e-17 | 82.8 |
| MS.gene013176.t1 | MTR_1g034240 | 39.024 | 82 | 50 | 0 | 1 | 82 | 23 | 104 | 1.43e-15 | 77.0 |
| MS.gene013176.t1 | MTR_1g021380 | 25.478 | 314 | 167 | 10 | 1 | 269 | 37 | 328 | 1.31e-17 | 82.0 |
| MS.gene013176.t1 | MTR_1g021435 | 24.615 | 325 | 179 | 9 | 1 | 269 | 38 | 352 | 6.18e-17 | 80.5 |
| MS.gene013176.t1 | MTR_1g021350 | 25.879 | 313 | 177 | 11 | 1 | 279 | 37 | 328 | 1.23e-16 | 79.3 |
| MS.gene013176.t1 | MTR_3g005440 | 35.294 | 85 | 55 | 0 | 1 | 85 | 36 | 120 | 4.79e-13 | 69.3 |
| MS.gene013176.t1 | MTR_3g005440 | 35.714 | 98 | 63 | 0 | 4 | 101 | 261 | 358 | 3.11e-11 | 63.9 |
| MS.gene013176.t1 | MTR_1g035490 | 34.646 | 127 | 76 | 4 | 147 | 271 | 75 | 196 | 7.77e-13 | 68.2 |
| MS.gene013176.t1 | MTR_1g035480 | 35.780 | 109 | 65 | 3 | 1 | 107 | 33 | 138 | 3.00e-12 | 64.3 |
| MS.gene013176.t1 | MTR_1g034210 | 35.165 | 91 | 58 | 1 | 1 | 90 | 23 | 113 | 3.58e-12 | 66.2 |
| MS.gene013176.t1 | MTR_1g034210 | 35.165 | 91 | 58 | 1 | 1 | 90 | 23 | 113 | 4.99e-12 | 66.2 |
| MS.gene013176.t1 | MTR_1g034210 | 30.328 | 122 | 79 | 2 | 150 | 271 | 243 | 358 | 2.99e-11 | 63.5 |
| MS.gene013176.t1 | MTR_3g061220 | 37.805 | 82 | 38 | 1 | 1 | 82 | 26 | 94 | 1.58e-11 | 60.8 |
| MS.gene013176.t1 | MTR_1g035650 | 29.947 | 187 | 122 | 5 | 1 | 186 | 25 | 203 | 1.59e-11 | 62.8 |
| MS.gene013176.t1 | MTR_1g021440 | 36.000 | 75 | 48 | 0 | 1 | 75 | 38 | 112 | 4.26e-11 | 62.8 |
| MS.gene013176.t1 | MTR_1g035500 | 34.862 | 109 | 66 | 3 | 1 | 107 | 41 | 146 | 4.33e-11 | 61.2 |
| MS.gene013176.t1 | MTR_1g021440 | 36.000 | 75 | 48 | 0 | 1 | 75 | 38 | 112 | 4.49e-11 | 62.8 |
| MS.gene013176.t1 | MTR_1g021440 | 36.000 | 75 | 48 | 0 | 1 | 75 | 38 | 112 | 7.70e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013176.t1 | AT3G18990 | 27.711 | 332 | 168 | 8 | 1 | 274 | 22 | 339 | 6.80e-30 | 116 |
| MS.gene013176.t1 | AT3G18990 | 27.660 | 329 | 166 | 8 | 1 | 271 | 22 | 336 | 1.15e-29 | 115 |
| MS.gene013176.t1 | AT1G49475 | 43.529 | 85 | 47 | 1 | 1 | 85 | 50 | 133 | 8.57e-17 | 77.4 |
| MS.gene013176.t1 | AT4G01580 | 42.045 | 88 | 51 | 0 | 1 | 88 | 46 | 133 | 1.02e-16 | 77.0 |
| MS.gene013176.t1 | AT3G18960 | 40.909 | 88 | 52 | 0 | 1 | 88 | 9 | 96 | 8.80e-16 | 73.9 |
| MS.gene013176.t1 | AT3G18960 | 40.909 | 88 | 52 | 0 | 1 | 88 | 46 | 133 | 1.09e-15 | 74.3 |
| MS.gene013176.t1 | AT3G18960 | 40.909 | 88 | 52 | 0 | 1 | 88 | 46 | 133 | 1.21e-15 | 74.7 |
| MS.gene013176.t1 | AT1G49480 | 28.415 | 183 | 110 | 6 | 89 | 271 | 60 | 221 | 9.31e-13 | 66.6 |
| MS.gene013176.t1 | AT1G49480 | 28.415 | 183 | 110 | 6 | 89 | 271 | 60 | 221 | 9.31e-13 | 66.6 |
| MS.gene013176.t1 | AT1G49480 | 28.415 | 183 | 110 | 6 | 89 | 271 | 60 | 221 | 9.31e-13 | 66.6 |
Find 51 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAATTGGAAATTAAATT+TGG | 0.186782 | 3.3:+81293112 | MS.gene013176:CDS |
| TATTTCTCCACAAGCTTTCT+TGG | 0.203077 | 3.3:-81293044 | None:intergenic |
| GCTAACTCCTCCTTTGAAAT+TGG | 0.203833 | 3.3:+81293383 | MS.gene013176:CDS |
| CAAAGATGTGCACATGAAAA+AGG | 0.205065 | 3.3:-81293241 | None:intergenic |
| CTTTCCAAGTTCATATATTC+AGG | 0.253552 | 3.3:+81294854 | MS.gene013176:CDS |
| ATTGAGTAGCTTCTTTCATT+TGG | 0.267478 | 3.3:-81295004 | None:intergenic |
| GACAAGAGTTGAAGCTAAAA+AGG | 0.273172 | 3.3:+81293295 | MS.gene013176:CDS |
| AGACTCCAAATGGTGTAAAT+TGG | 0.312711 | 3.3:+81293099 | MS.gene013176:CDS |
| AATTTCCAATTTACACCATT+TGG | 0.315099 | 3.3:-81293104 | None:intergenic |
| AGAAAGCTTGTGGAGAAATA+TGG | 0.315667 | 3.3:+81293047 | MS.gene013176:CDS |
| TGCAACTTACCAGAAGAAAA+TGG | 0.347556 | 3.3:-81294237 | None:intergenic |
| ATCCTGATTCGGTACTTTGC+AGG | 0.347997 | 3.3:-81294715 | None:intergenic |
| TTGAGTAGCTTCTTTCATTT+GGG | 0.352726 | 3.3:-81295003 | None:intergenic |
| CTACAATCTTCATTATTTGA+AGG | 0.379644 | 3.3:-81293341 | None:intergenic |
| AAGTGTCAAATGGCAGAGTT+TGG | 0.384047 | 3.3:+81294692 | MS.gene013176:CDS |
| TTATCAGCATCAACAATCAT+TGG | 0.392502 | 3.3:-81294130 | None:intergenic |
| GGCCTGCAAAGTACCGAATC+AGG | 0.422243 | 3.3:+81294713 | MS.gene013176:CDS |
| TGGCAAAATATGGTTTCAAA+AGG | 0.425042 | 3.3:+81293145 | MS.gene013176:CDS |
| TCCATCCTTTGTTGTTGTCA+TGG | 0.427556 | 3.3:+81294195 | MS.gene013176:CDS |
| GCAGTAGTTGTGTTAATGTT+CGG | 0.444915 | 3.3:+81293408 | MS.gene013176:CDS |
| CCATCCTTTGTTGTTGTCAT+GGG | 0.446533 | 3.3:+81294196 | MS.gene013176:CDS |
| TTAGCTTCAACTCTTGTCAA+AGG | 0.484921 | 3.3:-81293290 | None:intergenic |
| TAGCTTCAACTCTTGTCAAA+GGG | 0.493656 | 3.3:-81293289 | None:intergenic |
| CTTTCTGTCAATATGATGTA+CGG | 0.494299 | 3.3:-81293447 | None:intergenic |
| GAAGACAATAACTTGAAAGT+TGG | 0.499244 | 3.3:+81294790 | MS.gene013176:CDS |
| ACATGTGTAAAGACTCCAAA+TGG | 0.500501 | 3.3:+81293089 | MS.gene013176:CDS |
| TCTCCCTGAATATATGAACT+TGG | 0.502600 | 3.3:-81294858 | None:intergenic |
| CGTACATCATATTGACAGAA+AGG | 0.506265 | 3.3:+81293448 | MS.gene013176:CDS |
| CATCTTTGATAAGAGTGCCT+TGG | 0.514558 | 3.3:+81293256 | MS.gene013176:CDS |
| AAATATGGTTTCAAAAGGGA+TGG | 0.524548 | 3.3:+81293150 | MS.gene013176:CDS |
| CATATTGACAGAAAGGGAAA+AGG | 0.525115 | 3.3:+81293455 | MS.gene013176:CDS |
| TAATGTTCGGAAATTTCAAA+AGG | 0.529933 | 3.3:+81293421 | MS.gene013176:CDS |
| CTGTGTGGGACATCCTGATT+CGG | 0.531424 | 3.3:-81294726 | None:intergenic |
| CAGACTATACCGTCTATGTT+CGG | 0.532014 | 3.3:+81294622 | MS.gene013176:intron |
| GGCAAAATATGGTTTCAAAA+GGG | 0.535267 | 3.3:+81293146 | MS.gene013176:CDS |
| TTTCCAAGTTCATATATTCA+GGG | 0.536079 | 3.3:+81294855 | MS.gene013176:CDS |
| ACTACTGCTTCCAATTTCAA+AGG | 0.542132 | 3.3:-81293393 | None:intergenic |
| GTACATCATATTGACAGAAA+GGG | 0.549586 | 3.3:+81293449 | MS.gene013176:CDS |
| CAAAGGGCTATTTATCTCCA+AGG | 0.557179 | 3.3:-81293273 | None:intergenic |
| CCCATGACAACAACAAAGGA+TGG | 0.571041 | 3.3:-81294196 | None:intergenic |
| GAGTATCATTCTCTAGCTCA+TGG | 0.575939 | 3.3:+81293185 | MS.gene013176:CDS |
| CTAAGATTTGAACTCTCAAG+TGG | 0.579522 | 3.3:+81294751 | MS.gene013176:CDS |
| GATTTGAACTCTCAAGTGGA+TGG | 0.585291 | 3.3:+81294755 | MS.gene013176:CDS |
| GATGATGCCAAGAAAGCTTG+TGG | 0.596116 | 3.3:+81293037 | None:intergenic |
| TTCAAATCTTAGTCCTGTGT+GGG | 0.598172 | 3.3:-81294740 | None:intergenic |
| TTTAATTTGAATAAGAAGCG+AGG | 0.603085 | 3.3:+81294655 | MS.gene013176:CDS |
| ACTGCTTCCAATTTCAAAGG+AGG | 0.612452 | 3.3:-81293390 | None:intergenic |
| GTTCAAATCTTAGTCCTGTG+TGG | 0.647989 | 3.3:-81294741 | None:intergenic |
| TGTCTCTTACCGAACATAGA+CGG | 0.669663 | 3.3:-81294631 | None:intergenic |
| CGAATCAGGATGTCCCACAC+AGG | 0.680142 | 3.3:+81294727 | MS.gene013176:CDS |
| TGCACCCATGACAACAACAA+AGG | 0.693553 | 3.3:-81294200 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTAAATTGGAAATTAAATT+TGG | + | chr3.3:81293112-81293131 | MS.gene013176:CDS | 15.0% |
| !!! | AAGTTGATTTTAACATTTTT+TGG | + | chr3.3:81293674-81293693 | MS.gene013176:intron | 15.0% |
| !!! | TTATTATTCAACTCATTTTT+AGG | + | chr3.3:81293794-81293813 | MS.gene013176:intron | 15.0% |
| !!! | TTCATGTTATCATTTTTAAA+TGG | + | chr3.3:81293545-81293564 | MS.gene013176:intron | 15.0% |
| !! | ACAACTAAATATCTACTTTA+TGG | + | chr3.3:81294081-81294100 | MS.gene013176:intron | 20.0% |
| !! | CATATCAAAGTAAGATTAAT+TGG | + | chr3.3:81294908-81294927 | MS.gene013176:intron | 20.0% |
| !! | CTCCATTAAGAAATATATAT+TGG | + | chr3.3:81294325-81294344 | MS.gene013176:intron | 20.0% |
| !! | GACCAATATATATTTCTTAA+TGG | - | chr3.3:81294330-81294349 | None:intergenic | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | + | chr3.3:81293125-81293144 | MS.gene013176:CDS | 20.0% |
| !! | TTCTTTCATATTTAAAAAGC+AGG | - | chr3.3:81293217-81293236 | None:intergenic | 20.0% |
| !!! | ATGAATTGATTTAGTAAAGA+TGG | - | chr3.3:81294030-81294049 | None:intergenic | 20.0% |
| !!! | ATTGATTTTGTTTCTATAGT+TGG | + | chr3.3:81293711-81293730 | MS.gene013176:intron | 20.0% |
| ! | AATTTCCAATTTACACCATT+TGG | - | chr3.3:81293107-81293126 | None:intergenic | 25.0% |
| ! | CTACAATCTTCATTATTTGA+AGG | - | chr3.3:81293344-81293363 | None:intergenic | 25.0% |
| ! | GTAAGTTGCAAAGATAAATT+TGG | + | chr3.3:81294250-81294269 | MS.gene013176:intron | 25.0% |
| ! | TAAAAAGTGATGGCAAAATA+TGG | + | chr3.3:81293135-81293154 | MS.gene013176:CDS | 25.0% |
| ! | TAATGTTCGGAAATTTCAAA+AGG | + | chr3.3:81293421-81293440 | MS.gene013176:CDS | 25.0% |
| ! | TTTCCAAGTTCATATATTCA+GGG | + | chr3.3:81294855-81294874 | MS.gene013176:CDS | 25.0% |
| ! | TTTCTTAATGGAGAAAGATT+TGG | - | chr3.3:81294318-81294337 | None:intergenic | 25.0% |
| !!! | AAGATGGTTTTAGTTAAAAG+TGG | - | chr3.3:81294014-81294033 | None:intergenic | 25.0% |
| !!! | ATTCATTTTCAAGTGTCAAA+TGG | + | chr3.3:81294682-81294701 | MS.gene013176:CDS | 25.0% |
| !!! | TTTAATTTGAATAAGAAGCG+AGG | + | chr3.3:81294655-81294674 | MS.gene013176:CDS | 25.0% |
| AAAGATGTGCACATGAAAAA+GGG | - | chr3.3:81293243-81293262 | None:intergenic | 30.0% | |
| AAATATGGTTTCAAAAGGGA+TGG | + | chr3.3:81293150-81293169 | MS.gene013176:CDS | 30.0% | |
| ATTGAGTAGCTTCTTTCATT+TGG | - | chr3.3:81295007-81295026 | None:intergenic | 30.0% | |
| CATATTTAAAAAGCAGGAGA+TGG | - | chr3.3:81293211-81293230 | None:intergenic | 30.0% | |
| CTTTCCAAGTTCATATATTC+AGG | + | chr3.3:81294854-81294873 | MS.gene013176:CDS | 30.0% | |
| CTTTCTGTCAATATGATGTA+CGG | - | chr3.3:81293450-81293469 | None:intergenic | 30.0% | |
| GAAGACAATAACTTGAAAGT+TGG | + | chr3.3:81294790-81294809 | MS.gene013176:CDS | 30.0% | |
| GGCAAAATATGGTTTCAAAA+GGG | + | chr3.3:81293146-81293165 | MS.gene013176:CDS | 30.0% | |
| GTACATCATATTGACAGAAA+GGG | + | chr3.3:81293449-81293468 | MS.gene013176:CDS | 30.0% | |
| TGGCAAAATATGGTTTCAAA+AGG | + | chr3.3:81293145-81293164 | MS.gene013176:CDS | 30.0% | |
| TTATACCTAGAGTTAACATG+AGG | - | chr3.3:81293577-81293596 | None:intergenic | 30.0% | |
| TTATCAGCATCAACAATCAT+TGG | - | chr3.3:81294133-81294152 | None:intergenic | 30.0% | |
| TTGAGTAGCTTCTTTCATTT+GGG | - | chr3.3:81295006-81295025 | None:intergenic | 30.0% | |
| TTGAGTGCAAAAATCATCTT+TGG | - | chr3.3:81293772-81293791 | None:intergenic | 30.0% | |
| TTGAGTGTAAAATTCACTCT+TGG | - | chr3.3:81293931-81293950 | None:intergenic | 30.0% | |
| ! | ATTGACTTTGTCTCAAGAAT+TGG | + | chr3.3:81293871-81293890 | MS.gene013176:intron | 30.0% |
| ! | GATTGTGAAGTGTTTATGTT+TGG | - | chr3.3:81293988-81294007 | None:intergenic | 30.0% |
| ! | GATTTGGTTATTGATGTTGT+TGG | - | chr3.3:81294302-81294321 | None:intergenic | 30.0% |
| ! | GTCTTTACACATGTAGTTTT+CGG | - | chr3.3:81293083-81293102 | None:intergenic | 30.0% |
| ! | TGGCATTTTTATTGTGTGTT+TGG | + | chr3.3:81293613-81293632 | MS.gene013176:intron | 30.0% |
| !!! | CATTTTTTGGTCATGTCAAT+TGG | + | chr3.3:81293687-81293706 | MS.gene013176:intron | 30.0% |
| AAAAAGGTCTTCAACTGTCA+AGG | + | chr3.3:81293311-81293330 | MS.gene013176:CDS | 35.0% | |
| ACATGTGTAAAGACTCCAAA+TGG | + | chr3.3:81293089-81293108 | MS.gene013176:CDS | 35.0% | |
| ACTACTGCTTCCAATTTCAA+AGG | - | chr3.3:81293396-81293415 | None:intergenic | 35.0% | |
| AGAAAGCTTGTGGAGAAATA+TGG | + | chr3.3:81293047-81293066 | MS.gene013176:CDS | 35.0% | |
| AGACTCCAAATGGTGTAAAT+TGG | + | chr3.3:81293099-81293118 | MS.gene013176:CDS | 35.0% | |
| ATAACCATGTGGAAAATGAC+TGG | + | chr3.3:81293593-81293612 | MS.gene013176:intron | 35.0% | |
| ATGTACCTCATGTTAACTCT+AGG | + | chr3.3:81293569-81293588 | MS.gene013176:intron | 35.0% | |
| CAAAGATGTGCACATGAAAA+AGG | - | chr3.3:81293244-81293263 | None:intergenic | 35.0% | |
| CATATTGACAGAAAGGGAAA+AGG | + | chr3.3:81293455-81293474 | MS.gene013176:CDS | 35.0% | |
| CGTACATCATATTGACAGAA+AGG | + | chr3.3:81293448-81293467 | MS.gene013176:CDS | 35.0% | |
| CTAAGATTTGAACTCTCAAG+TGG | + | chr3.3:81294751-81294770 | MS.gene013176:CDS | 35.0% | |
| GACAAGAGTTGAAGCTAAAA+AGG | + | chr3.3:81293295-81293314 | MS.gene013176:CDS | 35.0% | |
| GCAGTAGTTGTGTTAATGTT+CGG | + | chr3.3:81293408-81293427 | MS.gene013176:CDS | 35.0% | |
| TAACTCTAGGTATAACCATG+TGG | + | chr3.3:81293582-81293601 | MS.gene013176:intron | 35.0% | |
| TAGCTTCAACTCTTGTCAAA+GGG | - | chr3.3:81293292-81293311 | None:intergenic | 35.0% | |
| TATTTCTCCACAAGCTTTCT+TGG | - | chr3.3:81293047-81293066 | None:intergenic | 35.0% | |
| TCTCCCTGAATATATGAACT+TGG | - | chr3.3:81294861-81294880 | None:intergenic | 35.0% | |
| TGCAACTTACCAGAAGAAAA+TGG | - | chr3.3:81294240-81294259 | None:intergenic | 35.0% | |
| TGGGAAAATTCTGCATAAAG+TGG | - | chr3.3:81294987-81295006 | None:intergenic | 35.0% | |
| TTAGCTTCAACTCTTGTCAA+AGG | - | chr3.3:81293293-81293312 | None:intergenic | 35.0% | |
| TTCAAATCTTAGTCCTGTGT+GGG | - | chr3.3:81294743-81294762 | None:intergenic | 35.0% | |
| ! | CATTTGCCTTTTCTTTTGCT+TGG | + | chr3.3:81294599-81294618 | MS.gene013176:intron | 35.0% |
| ! | GTTTTCCTGCAAAATCGAAA+TGG | - | chr3.3:81294111-81294130 | None:intergenic | 35.0% |
| AAGTGTCAAATGGCAGAGTT+TGG | + | chr3.3:81294692-81294711 | MS.gene013176:CDS | 40.0% | |
| ACTGCTTCCAATTTCAAAGG+AGG | - | chr3.3:81293393-81293412 | None:intergenic | 40.0% | |
| AGTCTGCCAAGCAAAAGAAA+AGG | - | chr3.3:81294608-81294627 | None:intergenic | 40.0% | |
| CAAAGGGCTATTTATCTCCA+AGG | - | chr3.3:81293276-81293295 | None:intergenic | 40.0% | |
| CAGACTATACCGTCTATGTT+CGG | + | chr3.3:81294622-81294641 | MS.gene013176:intron | 40.0% | |
| CCATTTCACGTTCAACTCAT+CGG | + | chr3.3:81293837-81293856 | MS.gene013176:intron | 40.0% | |
| GATTTGAACTCTCAAGTGGA+TGG | + | chr3.3:81294755-81294774 | MS.gene013176:CDS | 40.0% | |
| GTTCAAATCTTAGTCCTGTG+TGG | - | chr3.3:81294744-81294763 | None:intergenic | 40.0% | |
| TGTCTCTTACCGAACATAGA+CGG | - | chr3.3:81294634-81294653 | None:intergenic | 40.0% | |
| ! | GAGTATCATTCTCTAGCTCA+TGG | + | chr3.3:81293185-81293204 | MS.gene013176:CDS | 40.0% |
| ! | GTGTTCCATTTCGATTTTGC+AGG | + | chr3.3:81294103-81294122 | MS.gene013176:intron | 40.0% |
| ! | TGTGTGTTTGGTTTCACAGT+GGG | + | chr3.3:81293625-81293644 | MS.gene013176:intron | 40.0% |
| ! | TTGTGTGTTTGGTTTCACAG+TGG | + | chr3.3:81293624-81293643 | MS.gene013176:intron | 40.0% |
| !! | AATGCCAGTCATTTTCCACA+TGG | - | chr3.3:81293600-81293619 | None:intergenic | 40.0% |
| !! | CATCTTTGATAAGAGTGCCT+TGG | + | chr3.3:81293256-81293275 | MS.gene013176:CDS | 40.0% |
| !! | CCATCCTTTGTTGTTGTCAT+GGG | + | chr3.3:81294196-81294215 | MS.gene013176:CDS | 40.0% |
| !! | GCTAACTCCTCCTTTGAAAT+TGG | + | chr3.3:81293383-81293402 | MS.gene013176:CDS | 40.0% |
| !! | TCCATCCTTTGTTGTTGTCA+TGG | + | chr3.3:81294195-81294214 | MS.gene013176:CDS | 40.0% |
| CCCATGACAACAACAAAGGA+TGG | - | chr3.3:81294199-81294218 | None:intergenic | 45.0% | |
| TGCACCCATGACAACAACAA+AGG | - | chr3.3:81294203-81294222 | None:intergenic | 45.0% | |
| ! | CCGATGAGTTGAACGTGAAA+TGG | - | chr3.3:81293840-81293859 | None:intergenic | 45.0% |
| ! | CGTTGAGCACCATTTTCTTC+TGG | + | chr3.3:81294228-81294247 | MS.gene013176:CDS | 45.0% |
| ! | GTGTGTTTGGTTTCACAGTG+GGG | + | chr3.3:81293626-81293645 | MS.gene013176:intron | 45.0% |
| !! | ATCCTGATTCGGTACTTTGC+AGG | - | chr3.3:81294718-81294737 | None:intergenic | 45.0% |
| !!! | TTTTTTATGTTTATAAAAAT+TGG | - | chr3.3:81294059-81294078 | None:intergenic | 5.0% |
| ACAGTGGGGAGAGTCAAAAG+TGG | + | chr3.3:81293640-81293659 | MS.gene013176:intron | 50.0% | |
| CTGTGTGGGACATCCTGATT+CGG | - | chr3.3:81294729-81294748 | None:intergenic | 50.0% | |
| CGAATCAGGATGTCCCACAC+AGG | + | chr3.3:81294727-81294746 | MS.gene013176:CDS | 55.0% | |
| !! | GGCCTGCAAAGTACCGAATC+AGG | + | chr3.3:81294713-81294732 | MS.gene013176:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 81293041 | 81295028 | 81293041 | ID=MS.gene013176 |
| chr3.3 | mRNA | 81293041 | 81295028 | 81293041 | ID=MS.gene013176.t1;Parent=MS.gene013176 |
| chr3.3 | exon | 81293041 | 81293476 | 81293041 | ID=MS.gene013176.t1.exon1;Parent=MS.gene013176.t1 |
| chr3.3 | CDS | 81293041 | 81293476 | 81293041 | ID=cds.MS.gene013176.t1;Parent=MS.gene013176.t1 |
| chr3.3 | exon | 81294125 | 81294249 | 81294125 | ID=MS.gene013176.t1.exon2;Parent=MS.gene013176.t1 |
| chr3.3 | CDS | 81294125 | 81294249 | 81294125 | ID=cds.MS.gene013176.t1;Parent=MS.gene013176.t1 |
| chr3.3 | exon | 81294625 | 81294916 | 81294625 | ID=MS.gene013176.t1.exon3;Parent=MS.gene013176.t1 |
| chr3.3 | CDS | 81294625 | 81294916 | 81294625 | ID=cds.MS.gene013176.t1;Parent=MS.gene013176.t1 |
| chr3.3 | exon | 81294997 | 81295028 | 81294997 | ID=MS.gene013176.t1.exon4;Parent=MS.gene013176.t1 |
| chr3.3 | CDS | 81294997 | 81295028 | 81294997 | ID=cds.MS.gene013176.t1;Parent=MS.gene013176.t1 |
| Gene Sequence |
| Protein sequence |
