Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013199.t1 | XP_003602745.1 | 100 | 392 | 0 | 0 | 1 | 392 | 1 | 392 | 6.50E-185 | 656.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013199.t1 | O48559 | 96.2 | 395 | 12 | 1 | 1 | 392 | 1 | 395 | 8.6e-178 | 624.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013199.t1 | Q5BN33 | 100.0 | 392 | 0 | 0 | 1 | 392 | 1 | 392 | 4.7e-185 | 656.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013199.t1 | TF | LFY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013199.t1 | MTR_3g098560 | 99.745 | 392 | 1 | 0 | 1 | 392 | 1 | 392 | 0.0 | 811 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013199.t1 | AT5G61850 | 65.594 | 404 | 115 | 7 | 1 | 386 | 1 | 398 | 2.98e-160 | 457 |
| MS.gene013199.t1 | AT5G61850 | 64.951 | 408 | 115 | 8 | 1 | 386 | 1 | 402 | 9.99e-158 | 451 |
Find 122 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCTGAGAAGAGGGTTTA+AGG | 0.220415 | 3.2:+81776976 | MS.gene013199:CDS |
| ATGTCGTGAGTTCTTGATTC+AGG | 0.260029 | 3.2:+81776225 | MS.gene013199:CDS |
| GGTAACCTTGCTGGGTAATA+AGG | 0.267462 | 3.2:-81775260 | None:intergenic |
| GAGGCGGTGGGAAGCGGAGG+AGG | 0.273663 | 3.2:+81775959 | MS.gene013199:CDS |
| AGTTCTCTTGGTAACCTTGC+TGG | 0.317522 | 3.2:-81775269 | None:intergenic |
| CACATCCTCGTCTTTCAATA+TGG | 0.331865 | 3.2:+81777098 | MS.gene013199:CDS |
| AGGTGACAAATCAGGTATTT+AGG | 0.336960 | 3.2:+81776855 | MS.gene013199:intron |
| CCATTCATTGTGACAGAGCC+TGG | 0.376080 | 3.2:+81776145 | MS.gene013199:CDS |
| ACGGCATCAAAGCTGCCATT+AGG | 0.383226 | 3.2:+81775468 | MS.gene013199:CDS |
| GAGAAGGAGGCGGTGGGAAG+CGG | 0.385452 | 3.2:+81775953 | MS.gene013199:CDS |
| GACTGCGTAGTCGAGAAGTT+GGG | 0.398890 | 3.2:-81775216 | None:intergenic |
| CGGCATCAAAGCTGCCATTA+GGG | 0.401490 | 3.2:+81775469 | MS.gene013199:CDS |
| GAAGCGGAGGAGGGAGTACT+TGG | 0.416484 | 3.2:+81775969 | MS.gene013199:CDS |
| TTAGTATAGTATACCTTGGT+AGG | 0.417534 | 3.2:-81776283 | None:intergenic |
| AAACGCCGGGGTCTTCTCTC+TGG | 0.419881 | 3.2:+81775524 | MS.gene013199:CDS |
| CCAGGCTCTGTCACAATGAA+TGG | 0.421125 | 3.2:-81776145 | None:intergenic |
| AAGGAGGCGGTGGGAAGCGG+AGG | 0.424426 | 3.2:+81775956 | MS.gene013199:CDS |
| GCGTCTCCGTTCAGCCCTAA+TGG | 0.426738 | 3.2:-81775483 | None:intergenic |
| TCCAACCCTCCAAGTTCTCT+TGG | 0.430987 | 3.2:-81775281 | None:intergenic |
| TATTCTTAATTAAGGTTTGT+CGG | 0.438516 | 3.2:+81775910 | MS.gene013199:intron |
| TTGCCACGTGCAACTTCCCC+AGG | 0.439306 | 3.2:-81776163 | None:intergenic |
| GATTGAAGTCTAACTTAGAA+AGG | 0.448211 | 3.2:-81777211 | None:intergenic |
| TTAAGGTTTGTCGGAGGAGC+CGG | 0.457376 | 3.2:+81775919 | MS.gene013199:intron |
| GCAAGGTTACCAAGAGAACT+TGG | 0.476055 | 3.2:+81775272 | MS.gene013199:CDS |
| AAGGAGAAGGATGAAGATGA+AGG | 0.477090 | 3.2:+81776036 | MS.gene013199:CDS |
| AGAAGAGGGTTTAAGGAAAG+AGG | 0.480856 | 3.2:+81776983 | MS.gene013199:CDS |
| TGACTGCGTAGTCGAGAAGT+TGG | 0.482736 | 3.2:-81775217 | None:intergenic |
| GCTTCAAGCTCCGTCTCTGT+TGG | 0.485056 | 3.2:+81777175 | MS.gene013199:CDS |
| CAATAGCTGCACGTCAAGGA+TGG | 0.486959 | 3.2:+81777053 | MS.gene013199:CDS |
| GAAAGAGGCAGCAAATAAGA+AGG | 0.487031 | 3.2:+81776017 | MS.gene013199:CDS |
| ACAGCGAGAGAAGGAGGCGG+TGG | 0.487501 | 3.2:+81775946 | MS.gene013199:CDS |
| TGCGTGGGTCCCACTTGAAT+AGG | 0.494961 | 3.2:-81775163 | None:intergenic |
| TCCTTCTCTCGCTGTACCAC+CGG | 0.501299 | 3.2:-81775938 | None:intergenic |
| TAAGGTGACGGAGCAGTTGA+AGG | 0.502859 | 3.2:-81775242 | None:intergenic |
| AGGAGAAGGATGAAGATGAA+GGG | 0.505804 | 3.2:+81776037 | MS.gene013199:CDS |
| GAGAGCGTCAAGAGCGTTGG+TGG | 0.506027 | 3.2:-81775552 | None:intergenic |
| TTGAGTGTAGGTGACAAATC+AGG | 0.506470 | 3.2:+81776847 | MS.gene013199:intron |
| AGGCTGGCGGTGAATGCGTC+GGG | 0.507213 | 3.2:-81775143 | None:intergenic |
| GTTCTCTTGGTAACCTTGCT+GGG | 0.507232 | 3.2:-81775268 | None:intergenic |
| TGAAGAGGAAATTAAACGCC+GGG | 0.509415 | 3.2:+81775511 | MS.gene013199:CDS |
| TTTCGTTGGGATCTTCTCGT+TGG | 0.511591 | 3.2:+81775437 | MS.gene013199:CDS |
| AGTATCTGATTCCATAAGCT+TGG | 0.513074 | 3.2:-81775313 | None:intergenic |
| ATTGCATTGTTTAGATGAAG+AGG | 0.515227 | 3.2:+81776946 | MS.gene013199:CDS |
| GAATGAAGAAGGAGATGAGG+AGG | 0.516159 | 3.2:+81776078 | MS.gene013199:CDS |
| GTTTAATTTCCTCTTCATCA+AGG | 0.516212 | 3.2:-81775505 | None:intergenic |
| CTCTCCGCGTTCCTTAGCAA+TGG | 0.516636 | 3.2:-81776254 | None:intergenic |
| TGGGTCCCACTTGAATAGGC+TGG | 0.516787 | 3.2:-81775159 | None:intergenic |
| GGAGAAGGATGAAGATGAAG+GGG | 0.519390 | 3.2:+81776038 | MS.gene013199:CDS |
| ACCAAGAGAACTTGGAGGGT+TGG | 0.520875 | 3.2:+81775280 | MS.gene013199:CDS |
| AGGCGGTGGGAAGCGGAGGA+GGG | 0.524644 | 3.2:+81775960 | MS.gene013199:CDS |
| CATTCATTGTGACAGAGCCT+GGG | 0.529014 | 3.2:+81776146 | MS.gene013199:CDS |
| TTGGGAGGTAGCCGTGGTGG+AGG | 0.529312 | 3.2:+81775988 | MS.gene013199:CDS |
| CTTCTCGTTGGAGAACGTTA+CGG | 0.539245 | 3.2:+81775449 | MS.gene013199:CDS |
| ATGAAGGGGACTGGTGATCA+TGG | 0.540345 | 3.2:+81776052 | MS.gene013199:CDS |
| TGAGAATGAAGAAGGAGATG+AGG | 0.540691 | 3.2:+81776075 | MS.gene013199:CDS |
| AGGATGAAGATGAAGGGGAC+TGG | 0.542061 | 3.2:+81776043 | MS.gene013199:CDS |
| AAGAGAACTTGGAGGGTTGG+AGG | 0.545242 | 3.2:+81775283 | MS.gene013199:CDS |
| AGAGAGAGCGTCAAGAGCGT+TGG | 0.546844 | 3.2:-81775555 | None:intergenic |
| GCCGGTGGTACAGCGAGAGA+AGG | 0.548302 | 3.2:+81775937 | MS.gene013199:CDS |
| GGACGGAGAGGTGGAGCTGT+TGG | 0.549389 | 3.2:-81775194 | None:intergenic |
| GAGGAGAGAACGTTGGTGCA+TGG | 0.550139 | 3.2:+81777002 | MS.gene013199:CDS |
| AGAAGTTGGGGACGGAGAGG+TGG | 0.556007 | 3.2:-81775203 | None:intergenic |
| AGGTGGAGCTGTTGGTAGGA+CGG | 0.556396 | 3.2:-81775186 | None:intergenic |
| ACGGAGACGCCTTGATGAAG+AGG | 0.562424 | 3.2:+81775496 | MS.gene013199:CDS |
| TACTTGGGAGGTAGCCGTGG+TGG | 0.568788 | 3.2:+81775985 | MS.gene013199:CDS |
| GAAGTCTAACTTAGAAAGGA+AGG | 0.570913 | 3.2:-81777207 | None:intergenic |
| GCTGTTGGTAGGACGGTGCG+TGG | 0.571008 | 3.2:-81775179 | None:intergenic |
| GAAGATAACATCAGTGGTGG+GGG | 0.573896 | 3.2:+81776103 | MS.gene013199:CDS |
| AAGAAGATAACATCAGTGGT+GGG | 0.574442 | 3.2:+81776101 | MS.gene013199:CDS |
| TAGTATAGTATACCTTGGTA+GGG | 0.575157 | 3.2:-81776282 | None:intergenic |
| TAGGCTGGCGGTGAATGCGT+CGG | 0.576957 | 3.2:-81775144 | None:intergenic |
| GAGTACTTGGGAGGTAGCCG+TGG | 0.579508 | 3.2:+81775982 | MS.gene013199:CDS |
| AGAAGATAACATCAGTGGTG+GGG | 0.583595 | 3.2:+81776102 | MS.gene013199:CDS |
| CGTGCAGCTATTGCTACAAG+TGG | 0.585606 | 3.2:-81777043 | None:intergenic |
| GGTGGTACAGCGAGAGAAGG+AGG | 0.587891 | 3.2:+81775940 | MS.gene013199:CDS |
| GCGGCGAAGATAGCAGAGCT+TGG | 0.589296 | 3.2:+81775341 | MS.gene013199:CDS |
| AATAGCTGCACGTCAAGGAT+GGG | 0.590285 | 3.2:+81777054 | MS.gene013199:CDS |
| TCAGGTTCAAGCCATTGCTA+AGG | 0.593270 | 3.2:+81776243 | MS.gene013199:CDS |
| TGGTGGAGGAGAGAAGAAAG+AGG | 0.595087 | 3.2:+81776002 | MS.gene013199:CDS |
| ACTGCGTAGTCGAGAAGTTG+GGG | 0.596538 | 3.2:-81775215 | None:intergenic |
| CTTTCTTCTCTCCTCCACCA+CGG | 0.599475 | 3.2:-81775999 | None:intergenic |
| GAAGAAGATAACATCAGTGG+TGG | 0.599484 | 3.2:+81776100 | MS.gene013199:CDS |
| GTATCAAATGAGCTGAGAAG+AGG | 0.605442 | 3.2:+81776968 | MS.gene013199:CDS |
| CAGCGAGAGAAGGAGGCGGT+GGG | 0.606592 | 3.2:+81775947 | MS.gene013199:CDS |
| AGGTTTGTCGGAGGAGCCGG+TGG | 0.610012 | 3.2:+81775922 | MS.gene013199:intron |
| TCACCGCCAGCCTATTCAAG+TGG | 0.610527 | 3.2:+81775153 | MS.gene013199:CDS |
| GGAGAGGTGGAGCTGTTGGT+AGG | 0.611893 | 3.2:-81775190 | None:intergenic |
| GTCAGCTTTGTCATGCTGAG+AGG | 0.612831 | 3.2:+81777140 | MS.gene013199:CDS |
| GGCAGCAAATAAGAAGGAGA+AGG | 0.613195 | 3.2:+81776023 | MS.gene013199:CDS |
| TATCAAATGAGCTGAGAAGA+GGG | 0.613772 | 3.2:+81776969 | MS.gene013199:CDS |
| CGGAGGAGGGAGTACTTGGG+AGG | 0.615428 | 3.2:+81775973 | MS.gene013199:CDS |
| CTTGACGCTCTCTCTCAAGA+AGG | 0.618687 | 3.2:+81775563 | MS.gene013199:CDS |
| CTGTTGGTAGGACGGTGCGT+GGG | 0.619175 | 3.2:-81775178 | None:intergenic |
| CGTCACCTTATTACCCAGCA+AGG | 0.621883 | 3.2:+81775255 | MS.gene013199:CDS |
| GATCATGGTGAGAATGAAGA+AGG | 0.622763 | 3.2:+81776067 | MS.gene013199:CDS |
| AAGCGGAGGAGGGAGTACTT+GGG | 0.624155 | 3.2:+81775970 | MS.gene013199:CDS |
| GTAGCAATAGCTGCACGTCA+AGG | 0.625576 | 3.2:+81777049 | MS.gene013199:CDS |
| CTTGCTGGGTAATAAGGTGA+CGG | 0.634053 | 3.2:-81775254 | None:intergenic |
| GTCTAACTTAGAAAGGAAGG+TGG | 0.634743 | 3.2:-81777204 | None:intergenic |
| GTGGGCAGTTCCAACAGAGA+CGG | 0.635033 | 3.2:-81777185 | None:intergenic |
| GGTTACCAAGAGAACTTGGA+GGG | 0.636203 | 3.2:+81775276 | MS.gene013199:CDS |
| ATGAAGAGGAAATTAAACGC+CGG | 0.636563 | 3.2:+81775510 | MS.gene013199:CDS |
| AAGCTGCCATTAGGGCTGAA+CGG | 0.643172 | 3.2:+81775477 | MS.gene013199:CDS |
| CGGAGAGAAATGCCCTACCA+AGG | 0.646303 | 3.2:+81776270 | MS.gene013199:CDS |
| TCGAGAAGTTGGGGACGGAG+AGG | 0.648809 | 3.2:-81775206 | None:intergenic |
| CACCGCCAGCCTATTCAAGT+GGG | 0.649274 | 3.2:+81775154 | MS.gene013199:CDS |
| CAAGCCATTGCTAAGGAACG+CGG | 0.651128 | 3.2:+81776250 | MS.gene013199:CDS |
| TCTAACTTAGAAAGGAAGGT+GGG | 0.652391 | 3.2:-81777203 | None:intergenic |
| GAGCACGTTGGTGGACATGA+AGG | 0.653688 | 3.2:+81775373 | MS.gene013199:CDS |
| ATTCATTGTGACAGAGCCTG+GGG | 0.659933 | 3.2:+81776147 | MS.gene013199:CDS |
| GAGCCTGGGGAAGTTGCACG+TGG | 0.664392 | 3.2:+81776160 | MS.gene013199:CDS |
| AGGTTACCAAGAGAACTTGG+AGG | 0.664565 | 3.2:+81775275 | MS.gene013199:CDS |
| TCTTAATTAAGGTTTGTCGG+AGG | 0.666720 | 3.2:+81775913 | MS.gene013199:intron |
| AAGGAAAGAGGAGAGAACGT+TGG | 0.674755 | 3.2:+81776995 | MS.gene013199:CDS |
| GTCCCACTTGAATAGGCTGG+CGG | 0.674932 | 3.2:-81775156 | None:intergenic |
| CGTAGTCGAGAAGTTGGGGA+CGG | 0.679261 | 3.2:-81775211 | None:intergenic |
| GAGGAAGAAGATAACATCAG+TGG | 0.681977 | 3.2:+81776097 | MS.gene013199:CDS |
| GGTACAGCGAGAGAAGGAGG+CGG | 0.707868 | 3.2:+81775943 | MS.gene013199:CDS |
| ACGTACCATATTGAAAGACG+AGG | 0.718589 | 3.2:-81777103 | None:intergenic |
| GAAGAGGAAATTAAACGCCG+GGG | 0.750879 | 3.2:+81775512 | MS.gene013199:CDS |
| TATCACCAGAGAGAAGACCC+CGG | 0.770792 | 3.2:-81775529 | None:intergenic |
| TGGAATCAGATACTACACTG+CGG | 0.816299 | 3.2:+81775322 | MS.gene013199:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATACTATATTCTTAATTA+AGG | + | chr3.2:81775902-81775921 | MS.gene013199:intron | 10.0% |
| !! | TATACAAATAAAAAATTGTT+AGG | - | chr3.2:81775718-81775737 | None:intergenic | 10.0% |
| !!! | TTTTTATTTGTATATGAAAA+TGG | + | chr3.2:81775724-81775743 | MS.gene013199:intron | 10.0% |
| !! | ATTATTAGTACAAATATAAG+TGG | - | chr3.2:81775594-81775613 | None:intergenic | 15.0% |
| !! | TTATTCATTCATTTATTATC+CGG | + | chr3.2:81776605-81776624 | MS.gene013199:intron | 15.0% |
| !! | AAAGTAGTATCAAAATTTCA+TGG | - | chr3.2:81776721-81776740 | None:intergenic | 20.0% |
| !! | AATAAAACAAACAAAGTGTA+CGG | - | chr3.2:81776590-81776609 | None:intergenic | 20.0% |
| !! | AGTACATGATTAATAACTTT+AGG | + | chr3.2:81776800-81776819 | MS.gene013199:intron | 20.0% |
| !! | TATTCTTAATTAAGGTTTGT+CGG | + | chr3.2:81775910-81775929 | MS.gene013199:intron | 20.0% |
| !!! | TCATGGATATATTTTTGATT+GGG | - | chr3.2:81776704-81776723 | None:intergenic | 20.0% |
| !!! | TTCATGGATATATTTTTGAT+TGG | - | chr3.2:81776705-81776724 | None:intergenic | 20.0% |
| !!! | TTGATTATATTTGATAACTC+AGG | - | chr3.2:81775868-81775887 | None:intergenic | 20.0% |
| ! | TCATTAATTACTTTGAGTGT+AGG | + | chr3.2:81776835-81776854 | MS.gene013199:intron | 25.0% |
| ! | TTTGATACTACTTTGTGTAT+GGG | + | chr3.2:81776727-81776746 | MS.gene013199:intron | 25.0% |
| !! | TTTTGATACTACTTTGTGTA+TGG | + | chr3.2:81776726-81776745 | MS.gene013199:intron | 25.0% |
| ATTGCATTGTTTAGATGAAG+AGG | + | chr3.2:81776946-81776965 | MS.gene013199:CDS | 30.0% | |
| GTTGTTAGTATAGTATACCT+TGG | - | chr3.2:81776290-81776309 | None:intergenic | 30.0% | |
| TAGTATAGTATACCTTGGTA+GGG | - | chr3.2:81776285-81776304 | None:intergenic | 30.0% | |
| TTAGTATAGTATACCTTGGT+AGG | - | chr3.2:81776286-81776305 | None:intergenic | 30.0% | |
| TTTAGGTATGCAAAAAAAGC+TGG | + | chr3.2:81776872-81776891 | MS.gene013199:CDS | 30.0% | |
| ! | ATGCATGCATGATTTTGTTA+TGG | - | chr3.2:81776644-81776663 | None:intergenic | 30.0% |
| ! | CATGCATGCATTTTATTATC+CGG | + | chr3.2:81776653-81776672 | MS.gene013199:intron | 30.0% |
| ! | GTTTAATTTCCTCTTCATCA+AGG | - | chr3.2:81775508-81775527 | None:intergenic | 30.0% |
| !! | TTGATTGGGATTTGTTATGA+GGG | - | chr3.2:81776690-81776709 | None:intergenic | 30.0% |
| !! | TTTGATTGGGATTTGTTATG+AGG | - | chr3.2:81776691-81776710 | None:intergenic | 30.0% |
| AACACAACACAAAATCTGAC+TGG | - | chr3.2:81776428-81776447 | None:intergenic | 35.0% | |
| AAGAAGATAACATCAGTGGT+GGG | + | chr3.2:81776101-81776120 | MS.gene013199:CDS | 35.0% | |
| AGGTGACAAATCAGGTATTT+AGG | + | chr3.2:81776855-81776874 | MS.gene013199:intron | 35.0% | |
| AGTATCTGATTCCATAAGCT+TGG | - | chr3.2:81775316-81775335 | None:intergenic | 35.0% | |
| ATATGAAAATCCCAGTGGAA+TGG | - | chr3.2:81776557-81776576 | None:intergenic | 35.0% | |
| ATGAAGAGGAAATTAAACGC+CGG | + | chr3.2:81775510-81775529 | MS.gene013199:CDS | 35.0% | |
| CTTTGTGTATGGGATAGTAT+AGG | + | chr3.2:81776737-81776756 | MS.gene013199:intron | 35.0% | |
| TATCAAATGAGCTGAGAAGA+GGG | + | chr3.2:81776969-81776988 | MS.gene013199:CDS | 35.0% | |
| TATGAAAATCCCAGTGGAAT+GGG | - | chr3.2:81776556-81776575 | None:intergenic | 35.0% | |
| TCTTAATTAAGGTTTGTCGG+AGG | + | chr3.2:81775913-81775932 | MS.gene013199:intron | 35.0% | |
| TGATCATATGAAAATCCCAG+TGG | - | chr3.2:81776562-81776581 | None:intergenic | 35.0% | |
| TGTATGGGATAGTATAGGAT+AGG | + | chr3.2:81776742-81776761 | MS.gene013199:intron | 35.0% | |
| !! | GCAAGAAAGTACTGTTCAAA+CGG | - | chr3.2:81776474-81776493 | None:intergenic | 35.0% |
| !! | TTATGGTTCTAGTTTGTGAC+CGG | - | chr3.2:81776627-81776646 | None:intergenic | 35.0% |
| AAGGAGAAGGATGAAGATGA+AGG | + | chr3.2:81776036-81776055 | MS.gene013199:CDS | 40.0% | |
| ACGTACCATATTGAAAGACG+AGG | - | chr3.2:81777106-81777125 | None:intergenic | 40.0% | |
| AGAAGAGGGTTTAAGGAAAG+AGG | + | chr3.2:81776983-81777002 | MS.gene013199:CDS | 40.0% | |
| AGAAGATAACATCAGTGGTG+GGG | + | chr3.2:81776102-81776121 | MS.gene013199:CDS | 40.0% | |
| AGGAGAAGGATGAAGATGAA+GGG | + | chr3.2:81776037-81776056 | MS.gene013199:CDS | 40.0% | |
| ATGAAAATCCCAGTGGAATG+GGG | - | chr3.2:81776555-81776574 | None:intergenic | 40.0% | |
| ATGTCGTGAGTTCTTGATTC+AGG | + | chr3.2:81776225-81776244 | MS.gene013199:CDS | 40.0% | |
| CACATCCTCGTCTTTCAATA+TGG | + | chr3.2:81777098-81777117 | MS.gene013199:CDS | 40.0% | |
| GAAAGAGGCAGCAAATAAGA+AGG | + | chr3.2:81776017-81776036 | MS.gene013199:CDS | 40.0% | |
| GAAGAAGATAACATCAGTGG+TGG | + | chr3.2:81776100-81776119 | MS.gene013199:CDS | 40.0% | |
| GAGGAAGAAGATAACATCAG+TGG | + | chr3.2:81776097-81776116 | MS.gene013199:CDS | 40.0% | |
| GATCATGGTGAGAATGAAGA+AGG | + | chr3.2:81776067-81776086 | MS.gene013199:CDS | 40.0% | |
| GGATAGTATAGGATAGGATG+GGG | + | chr3.2:81776748-81776767 | MS.gene013199:intron | 40.0% | |
| GGGATAGTATAGGATAGGAT+GGG | + | chr3.2:81776747-81776766 | MS.gene013199:intron | 40.0% | |
| GTATCAAATGAGCTGAGAAG+AGG | + | chr3.2:81776968-81776987 | MS.gene013199:CDS | 40.0% | |
| TGAAGAGGAAATTAAACGCC+GGG | + | chr3.2:81775511-81775530 | MS.gene013199:CDS | 40.0% | |
| TGAGAATGAAGAAGGAGATG+AGG | + | chr3.2:81776075-81776094 | MS.gene013199:CDS | 40.0% | |
| TGGAATCAGATACTACACTG+CGG | + | chr3.2:81775322-81775341 | MS.gene013199:CDS | 40.0% | |
| TGGGATAGTATAGGATAGGA+TGG | + | chr3.2:81776746-81776765 | MS.gene013199:intron | 40.0% | |
| TTGAGTGTAGGTGACAAATC+AGG | + | chr3.2:81776847-81776866 | MS.gene013199:intron | 40.0% | |
| ! | GAGGAACTTTTCCAAGCTTA+TGG | + | chr3.2:81775302-81775321 | MS.gene013199:CDS | 40.0% |
| ! | TGCACGTAGTGTCTCATTTT+TGG | - | chr3.2:81776917-81776936 | None:intergenic | 40.0% |
| !! | CAAAGCTGACGAAGTTTTGT+TGG | - | chr3.2:81777130-81777149 | None:intergenic | 40.0% |
| AAGGAAAGAGGAGAGAACGT+TGG | + | chr3.2:81776995-81777014 | MS.gene013199:CDS | 45.0% | |
| AATAGCTGCACGTCAAGGAT+GGG | + | chr3.2:81777054-81777073 | MS.gene013199:CDS | 45.0% | |
| ACTGTTCAAACGGTTCGTGA+AGG | - | chr3.2:81776464-81776483 | None:intergenic | 45.0% | |
| AGGTTACCAAGAGAACTTGG+AGG | + | chr3.2:81775275-81775294 | MS.gene013199:CDS | 45.0% | |
| ATTCATTGTGACAGAGCCTG+GGG | + | chr3.2:81776147-81776166 | MS.gene013199:CDS | 45.0% | |
| CATTCATTGTGACAGAGCCT+GGG | + | chr3.2:81776146-81776165 | MS.gene013199:CDS | 45.0% | |
| CTTCTCGTTGGAGAACGTTA+CGG | + | chr3.2:81775449-81775468 | MS.gene013199:CDS | 45.0% | |
| CTTGCTGGGTAATAAGGTGA+CGG | - | chr3.2:81775257-81775276 | None:intergenic | 45.0% | |
| GAAGAGGAAATTAAACGCCG+GGG | + | chr3.2:81775512-81775531 | MS.gene013199:CDS | 45.0% | |
| GAAGATAACATCAGTGGTGG+GGG | + | chr3.2:81776103-81776122 | MS.gene013199:CDS | 45.0% | |
| GAATGAAGAAGGAGATGAGG+AGG | + | chr3.2:81776078-81776097 | MS.gene013199:CDS | 45.0% | |
| GCAAGGTTACCAAGAGAACT+TGG | + | chr3.2:81775272-81775291 | MS.gene013199:CDS | 45.0% | |
| GGAGAAGGATGAAGATGAAG+GGG | + | chr3.2:81776038-81776057 | MS.gene013199:CDS | 45.0% | |
| GGCAGCAAATAAGAAGGAGA+AGG | + | chr3.2:81776023-81776042 | MS.gene013199:CDS | 45.0% | |
| GGTAACCTTGCTGGGTAATA+AGG | - | chr3.2:81775263-81775282 | None:intergenic | 45.0% | |
| GGTTACCAAGAGAACTTGGA+GGG | + | chr3.2:81775276-81775295 | MS.gene013199:CDS | 45.0% | |
| GTTGCACGTGGCAAAAAGAA+CGG | + | chr3.2:81776172-81776191 | MS.gene013199:CDS | 45.0% | |
| TATGAGGGCAAGCTAAGATC+CGG | - | chr3.2:81776675-81776694 | None:intergenic | 45.0% | |
| TCAGGTTCAAGCCATTGCTA+AGG | + | chr3.2:81776243-81776262 | MS.gene013199:CDS | 45.0% | |
| TGAGCTGAGAAGAGGGTTTA+AGG | + | chr3.2:81776976-81776995 | MS.gene013199:CDS | 45.0% | |
| TTTCGTTGGGATCTTCTCGT+TGG | + | chr3.2:81775437-81775456 | MS.gene013199:CDS | 45.0% | |
| ! | AGTTCTCTTGGTAACCTTGC+TGG | - | chr3.2:81775272-81775291 | None:intergenic | 45.0% |
| ! | CCTCTCGCAGATTTTTCGTT+GGG | + | chr3.2:81775424-81775443 | MS.gene013199:CDS | 45.0% |
| ! | GTTCTCTTGGTAACCTTGCT+GGG | - | chr3.2:81775271-81775290 | None:intergenic | 45.0% |
| ! | TTTTACAGTGAGCACGTTGG+TGG | + | chr3.2:81775364-81775383 | MS.gene013199:CDS | 45.0% |
| !! | TGGTTTTACAGTGAGCACGT+TGG | + | chr3.2:81775361-81775380 | MS.gene013199:CDS | 45.0% |
| AAAATCCCAGTGGAATGGGG+AGG | - | chr3.2:81776552-81776571 | None:intergenic | 50.0% | |
| AACCCATTAGGAGAGTCCCT+GGG | - | chr3.2:81776526-81776545 | None:intergenic | 50.0% | |
| AAGAGAACTTGGAGGGTTGG+AGG | + | chr3.2:81775283-81775302 | MS.gene013199:CDS | 50.0% | |
| AAGCTGCCATTAGGGCTGAA+CGG | + | chr3.2:81775477-81775496 | MS.gene013199:CDS | 50.0% | |
| ACCAAGAGAACTTGGAGGGT+TGG | + | chr3.2:81775280-81775299 | MS.gene013199:CDS | 50.0% | |
| ACGGCATCAAAGCTGCCATT+AGG | + | chr3.2:81775468-81775487 | MS.gene013199:CDS | 50.0% | |
| ACGTGGCAAAAAGAACGGTC+TGG | + | chr3.2:81776177-81776196 | MS.gene013199:CDS | 50.0% | |
| ACTGCGTAGTCGAGAAGTTG+GGG | - | chr3.2:81775218-81775237 | None:intergenic | 50.0% | |
| AGGATGAAGATGAAGGGGAC+TGG | + | chr3.2:81776043-81776062 | MS.gene013199:CDS | 50.0% | |
| CAAGCCATTGCTAAGGAACG+CGG | + | chr3.2:81776250-81776269 | MS.gene013199:CDS | 50.0% | |
| CAATAGCTGCACGTCAAGGA+TGG | + | chr3.2:81777053-81777072 | MS.gene013199:CDS | 50.0% | |
| CCAGGCTCTGTCACAATGAA+TGG | - | chr3.2:81776148-81776167 | None:intergenic | 50.0% | |
| CCATTCATTGTGACAGAGCC+TGG | + | chr3.2:81776145-81776164 | MS.gene013199:CDS | 50.0% | |
| CCCAACGAAAAATCTGCGAG+AGG | - | chr3.2:81775427-81775446 | None:intergenic | 50.0% | |
| CGGCATCAAAGCTGCCATTA+GGG | + | chr3.2:81775469-81775488 | MS.gene013199:CDS | 50.0% | |
| CGTCACCTTATTACCCAGCA+AGG | + | chr3.2:81775255-81775274 | MS.gene013199:CDS | 50.0% | |
| CGTGCAGCTATTGCTACAAG+TGG | - | chr3.2:81777046-81777065 | None:intergenic | 50.0% | |
| CTTGACGCTCTCTCTCAAGA+AGG | + | chr3.2:81775563-81775582 | MS.gene013199:CDS | 50.0% | |
| CTTTCTTCTCTCCTCCACCA+CGG | - | chr3.2:81776002-81776021 | None:intergenic | 50.0% | |
| GACTGCGTAGTCGAGAAGTT+GGG | - | chr3.2:81775219-81775238 | None:intergenic | 50.0% | |
| GTAGCAATAGCTGCACGTCA+AGG | + | chr3.2:81777049-81777068 | MS.gene013199:CDS | 50.0% | |
| GTGTTCGGATGAACGTGTCA+CGG | - | chr3.2:81776496-81776515 | None:intergenic | 50.0% | |
| TATCACCAGAGAGAAGACCC+CGG | - | chr3.2:81775532-81775551 | None:intergenic | 50.0% | |
| TCCAACCCTCCAAGTTCTCT+TGG | - | chr3.2:81775284-81775303 | None:intergenic | 50.0% | |
| TGACTGCGTAGTCGAGAAGT+TGG | - | chr3.2:81775220-81775239 | None:intergenic | 50.0% | |
| TGGTGGAGGAGAGAAGAAAG+AGG | + | chr3.2:81776002-81776021 | MS.gene013199:CDS | 50.0% | |
| TTAAGGTTTGTCGGAGGAGC+CGG | + | chr3.2:81775919-81775938 | MS.gene013199:intron | 50.0% | |
| ! | ATGAAGGGGACTGGTGATCA+TGG | + | chr3.2:81776052-81776071 | MS.gene013199:CDS | 50.0% |
| ! | GCCTCTCGCAGATTTTTCGT+TGG | + | chr3.2:81775423-81775442 | MS.gene013199:CDS | 50.0% |
| ! | GTCAGCTTTGTCATGCTGAG+AGG | + | chr3.2:81777140-81777159 | MS.gene013199:CDS | 50.0% |
| !! | TAAGGTGACGGAGCAGTTGA+AGG | - | chr3.2:81775245-81775264 | None:intergenic | 50.0% |
| ACGGAGACGCCTTGATGAAG+AGG | + | chr3.2:81775496-81775515 | MS.gene013199:CDS | 55.0% | |
| ATGGGGAGGTGGAACCCATT+AGG | - | chr3.2:81776538-81776557 | None:intergenic | 55.0% | |
| CACCGCCAGCCTATTCAAGT+GGG | + | chr3.2:81775154-81775173 | MS.gene013199:CDS | 55.0% | |
| CGGAGAGAAATGCCCTACCA+AGG | + | chr3.2:81776270-81776289 | MS.gene013199:CDS | 55.0% | |
| CGTAGTCGAGAAGTTGGGGA+CGG | - | chr3.2:81775214-81775233 | None:intergenic | 55.0% | |
| CTCTCCGCGTTCCTTAGCAA+TGG | - | chr3.2:81776257-81776276 | None:intergenic | 55.0% | |
| GAACCCATTAGGAGAGTCCC+TGG | - | chr3.2:81776527-81776546 | None:intergenic | 55.0% | |
| GACCCAGGGACTCTCCTAAT+GGG | + | chr3.2:81776521-81776540 | MS.gene013199:intron | 55.0% | |
| GAGGAGAGAACGTTGGTGCA+TGG | + | chr3.2:81777002-81777021 | MS.gene013199:CDS | 55.0% | |
| GCTTCAAGCTCCGTCTCTGT+TGG | + | chr3.2:81777175-81777194 | MS.gene013199:CDS | 55.0% | |
| GTCCCACTTGAATAGGCTGG+CGG | - | chr3.2:81775159-81775178 | None:intergenic | 55.0% | |
| GTGGGCAGTTCCAACAGAGA+CGG | - | chr3.2:81777188-81777207 | None:intergenic | 55.0% | |
| TCACCGCCAGCCTATTCAAG+TGG | + | chr3.2:81775153-81775172 | MS.gene013199:CDS | 55.0% | |
| TCCTTCTCTCGCTGTACCAC+CGG | - | chr3.2:81775941-81775960 | None:intergenic | 55.0% | |
| TGCGTGGGTCCCACTTGAAT+AGG | - | chr3.2:81775166-81775185 | None:intergenic | 55.0% | |
| TGGGTCCCACTTGAATAGGC+TGG | - | chr3.2:81775162-81775181 | None:intergenic | 55.0% | |
| TTCCACCTCCCCATTCCACT+GGG | + | chr3.2:81776544-81776563 | MS.gene013199:intron | 55.0% | |
| ! | AGGTGGAGCTGTTGGTAGGA+CGG | - | chr3.2:81775189-81775208 | None:intergenic | 55.0% |
| ! | GAGCACGTTGGTGGACATGA+AGG | + | chr3.2:81775373-81775392 | MS.gene013199:CDS | 55.0% |
| !! | AAGCGGAGGAGGGAGTACTT+GGG | + | chr3.2:81775970-81775989 | MS.gene013199:CDS | 55.0% |
| !! | AGAGAGAGCGTCAAGAGCGT+TGG | - | chr3.2:81775558-81775577 | None:intergenic | 55.0% |
| AAACGCCGGGGTCTTCTCTC+TGG | + | chr3.2:81775524-81775543 | MS.gene013199:CDS | 60.0% | |
| AGAAGTTGGGGACGGAGAGG+TGG | - | chr3.2:81775206-81775225 | None:intergenic | 60.0% | |
| ATCCCAGTGGAATGGGGAGG+TGG | - | chr3.2:81776549-81776568 | None:intergenic | 60.0% | |
| ATCCGAACACGTGACGACCC+AGG | + | chr3.2:81776506-81776525 | MS.gene013199:intron | 60.0% | |
| CGACCCAGGGACTCTCCTAA+TGG | + | chr3.2:81776520-81776539 | MS.gene013199:intron | 60.0% | |
| GAGTACTTGGGAGGTAGCCG+TGG | + | chr3.2:81775982-81776001 | MS.gene013199:CDS | 60.0% | |
| GCGGCGAAGATAGCAGAGCT+TGG | + | chr3.2:81775341-81775360 | MS.gene013199:CDS | 60.0% | |
| GCGTCTCCGTTCAGCCCTAA+TGG | - | chr3.2:81775486-81775505 | None:intergenic | 60.0% | |
| GGAGAGGTGGAGCTGTTGGT+AGG | - | chr3.2:81775193-81775212 | None:intergenic | 60.0% | |
| GGTACAGCGAGAGAAGGAGG+CGG | + | chr3.2:81775943-81775962 | MS.gene013199:CDS | 60.0% | |
| GGTGGTACAGCGAGAGAAGG+AGG | + | chr3.2:81775940-81775959 | MS.gene013199:CDS | 60.0% | |
| GTTCCACCTCCCCATTCCAC+TGG | + | chr3.2:81776543-81776562 | MS.gene013199:intron | 60.0% | |
| TACTTGGGAGGTAGCCGTGG+TGG | + | chr3.2:81775985-81776004 | MS.gene013199:CDS | 60.0% | |
| TAGGCTGGCGGTGAATGCGT+CGG | - | chr3.2:81775147-81775166 | None:intergenic | 60.0% | |
| TCCCTGGGTCGTCACGTGTT+CGG | - | chr3.2:81776511-81776530 | None:intergenic | 60.0% | |
| TCCGAACACGTGACGACCCA+GGG | + | chr3.2:81776507-81776526 | MS.gene013199:intron | 60.0% | |
| TCGAGAAGTTGGGGACGGAG+AGG | - | chr3.2:81775209-81775228 | None:intergenic | 60.0% | |
| TTGCCACGTGCAACTTCCCC+AGG | - | chr3.2:81776166-81776185 | None:intergenic | 60.0% | |
| ! | CTGTTGGTAGGACGGTGCGT+GGG | - | chr3.2:81775181-81775200 | None:intergenic | 60.0% |
| !! | GAAGCGGAGGAGGGAGTACT+TGG | + | chr3.2:81775969-81775988 | MS.gene013199:CDS | 60.0% |
| !! | GAGAGCGTCAAGAGCGTTGG+TGG | - | chr3.2:81775555-81775574 | None:intergenic | 60.0% |
| ACAGCGAGAGAAGGAGGCGG+TGG | + | chr3.2:81775946-81775965 | MS.gene013199:CDS | 65.0% | |
| AGGCTGGCGGTGAATGCGTC+GGG | - | chr3.2:81775146-81775165 | None:intergenic | 65.0% | |
| AGGTTTGTCGGAGGAGCCGG+TGG | + | chr3.2:81775922-81775941 | MS.gene013199:intron | 65.0% | |
| CAGCGAGAGAAGGAGGCGGT+GGG | + | chr3.2:81775947-81775966 | MS.gene013199:CDS | 65.0% | |
| GAGAAGGAGGCGGTGGGAAG+CGG | + | chr3.2:81775953-81775972 | MS.gene013199:CDS | 65.0% | |
| GAGCCTGGGGAAGTTGCACG+TGG | + | chr3.2:81776160-81776179 | MS.gene013199:CDS | 65.0% | |
| GCCGGTGGTACAGCGAGAGA+AGG | + | chr3.2:81775937-81775956 | MS.gene013199:CDS | 65.0% | |
| GGACGGAGAGGTGGAGCTGT+TGG | - | chr3.2:81775197-81775216 | None:intergenic | 65.0% | |
| TTGGGAGGTAGCCGTGGTGG+AGG | + | chr3.2:81775988-81776007 | MS.gene013199:CDS | 65.0% | |
| ! | GCTGTTGGTAGGACGGTGCG+TGG | - | chr3.2:81775182-81775201 | None:intergenic | 65.0% |
| !! | CGGAGGAGGGAGTACTTGGG+AGG | + | chr3.2:81775973-81775992 | MS.gene013199:CDS | 65.0% |
| AAGGAGGCGGTGGGAAGCGG+AGG | + | chr3.2:81775956-81775975 | MS.gene013199:CDS | 70.0% | |
| AGGCGGTGGGAAGCGGAGGA+GGG | + | chr3.2:81775960-81775979 | MS.gene013199:CDS | 70.0% | |
| GAGGCGGTGGGAAGCGGAGG+AGG | + | chr3.2:81775959-81775978 | MS.gene013199:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 81775137 | 81777219 | 81775137 | ID=MS.gene013199 |
| chr3.2 | mRNA | 81775137 | 81777219 | 81775137 | ID=MS.gene013199.t1;Parent=MS.gene013199 |
| chr3.2 | exon | 81775137 | 81775584 | 81775137 | ID=MS.gene013199.t1.exon1;Parent=MS.gene013199.t1 |
| chr3.2 | CDS | 81775137 | 81775584 | 81775137 | ID=cds.MS.gene013199.t1;Parent=MS.gene013199.t1 |
| chr3.2 | exon | 81775924 | 81776291 | 81775924 | ID=MS.gene013199.t1.exon2;Parent=MS.gene013199.t1 |
| chr3.2 | CDS | 81775924 | 81776291 | 81775924 | ID=cds.MS.gene013199.t1;Parent=MS.gene013199.t1 |
| chr3.2 | exon | 81776857 | 81777219 | 81776857 | ID=MS.gene013199.t1.exon3;Parent=MS.gene013199.t1 |
| chr3.2 | CDS | 81776857 | 81777219 | 81776857 | ID=cds.MS.gene013199.t1;Parent=MS.gene013199.t1 |
| Gene Sequence |
| Protein sequence |
