Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013332.t1 | XP_003602576.2 | 96.6 | 235 | 6 | 2 | 1 | 235 | 1 | 233 | 6.50E-103 | 383.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013332.t1 | B9RU15 | 50.5 | 188 | 89 | 3 | 51 | 238 | 37 | 220 | 3.4e-44 | 179.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013332.t1 | G7JBG7 | 96.6 | 235 | 6 | 2 | 1 | 235 | 1 | 233 | 4.7e-103 | 383.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013332.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013332.t1 | MTR_3g095840 | 97.872 | 235 | 3 | 2 | 1 | 235 | 1 | 233 | 1.24e-166 | 465 |
| MS.gene013332.t1 | MTR_1g007670 | 54.268 | 164 | 71 | 2 | 74 | 236 | 26 | 186 | 4.02e-51 | 169 |
| MS.gene013332.t1 | MTR_3g095830 | 59.649 | 114 | 37 | 3 | 8 | 121 | 3 | 107 | 2.80e-39 | 132 |
| MS.gene013332.t1 | MTR_1g007700 | 40.625 | 160 | 61 | 2 | 74 | 233 | 258 | 383 | 1.36e-33 | 127 |
| MS.gene013332.t1 | MTR_5g010300 | 47.917 | 48 | 25 | 0 | 74 | 121 | 242 | 289 | 2.59e-11 | 63.5 |
| MS.gene013332.t1 | MTR_5g010300 | 47.917 | 48 | 25 | 0 | 74 | 121 | 242 | 289 | 2.74e-11 | 63.5 |
| MS.gene013332.t1 | MTR_5g010300 | 47.917 | 48 | 25 | 0 | 74 | 121 | 242 | 289 | 3.07e-11 | 63.2 |
| MS.gene013332.t1 | MTR_5g010300 | 47.917 | 48 | 25 | 0 | 74 | 121 | 242 | 289 | 3.30e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013332.t1 | AT5G09790 | 60.000 | 165 | 63 | 2 | 72 | 236 | 62 | 223 | 2.74e-65 | 207 |
| MS.gene013332.t1 | AT5G09790 | 59.394 | 165 | 63 | 2 | 72 | 236 | 62 | 222 | 3.32e-64 | 204 |
| MS.gene013332.t1 | AT5G24330 | 54.037 | 161 | 72 | 1 | 76 | 236 | 34 | 192 | 1.00e-52 | 174 |
Find 78 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCCACCGTTCTCTAAAA+TGG | 0.242537 | 3.4:-86926923 | None:intergenic |
| CGTAGGGATTCTCTTGATTC+CGG | 0.245953 | 3.4:+86924767 | MS.gene013332:CDS |
| AGAAAATTCTCCATTTCTTC+GGG | 0.303724 | 3.4:+86924741 | MS.gene013332:CDS |
| AAGAAAATTCTCCATTTCTT+CGG | 0.317251 | 3.4:+86924740 | MS.gene013332:CDS |
| ATTTGCTTCAGCCTCCTATC+AGG | 0.349536 | 3.4:-86926805 | None:intergenic |
| GTAGGGATTCTCTTGATTCC+GGG | 0.353728 | 3.4:+86924768 | MS.gene013332:CDS |
| AATAAGCTGACGTACTTTCC+AGG | 0.362677 | 3.4:+86926874 | MS.gene013332:CDS |
| CCCTACGAAGCCCGAAGAAA+TGG | 0.364855 | 3.4:-86924751 | None:intergenic |
| GAACAATCGTGCTTCTTCTC+AGG | 0.365882 | 3.4:+86924790 | MS.gene013332:CDS |
| TGCTACTGCTTTAACAGCAT+TGG | 0.399408 | 3.4:+86926837 | MS.gene013332:CDS |
| TTCTGTACCACCAGAGGTCT+TGG | 0.407511 | 3.4:-86926742 | None:intergenic |
| AGAAGAAGCACGATTGTTCC+CGG | 0.418393 | 3.4:-86924786 | None:intergenic |
| ATCGGAACTCGAACAACAAT+TGG | 0.420274 | 3.4:-86924543 | None:intergenic |
| GCAGATCTAGGAGCCATTCC+TGG | 0.421695 | 3.4:-86926892 | None:intergenic |
| CGCTTGTTAATATATATAAG+AGG | 0.428689 | 3.4:+86924385 | MS.gene013332:CDS |
| ATGTGGGTCCGGTGAACAAC+CGG | 0.439307 | 3.4:+86924464 | MS.gene013332:CDS |
| GGATCTTCTGTAGGAACAAA+TGG | 0.446011 | 3.4:-86926784 | None:intergenic |
| GATTAAGCTTGATAGCTTGA+TGG | 0.452643 | 3.4:-86924268 | None:intergenic |
| CTCTGGTGGTACAGAAGAAA+AGG | 0.456244 | 3.4:+86926749 | MS.gene013332:CDS |
| GACCTTGACATCAGAACACT+TGG | 0.458131 | 3.4:-86924583 | None:intergenic |
| ACCTCCTGTGTGAGCAATGT+GGG | 0.458530 | 3.4:+86924448 | MS.gene013332:CDS |
| GCTGAGGAGGAGGAGGATTA+CGG | 0.459874 | 3.4:+86924423 | MS.gene013332:CDS |
| CTCCACCTTCGAGGAGGAGG+AGG | 0.460011 | 3.4:+86924347 | MS.gene013332:CDS |
| GGCTGAGTACACGGTGGCTG+AGG | 0.462695 | 3.4:+86924407 | MS.gene013332:CDS |
| CTCCTCTTCCTCCACCTTCG+AGG | 0.464032 | 3.4:+86924338 | MS.gene013332:CDS |
| CTCCTCGAAGGTGGAGGAAG+AGG | 0.464573 | 3.4:-86924340 | None:intergenic |
| TTCCTCCACCTTCGAGGAGG+AGG | 0.469701 | 3.4:+86924344 | MS.gene013332:CDS |
| CCATTTCTTCGGGCTTCGTA+GGG | 0.472840 | 3.4:+86924751 | MS.gene013332:CDS |
| TCACACAAAAGCAGCTCCTC+CGG | 0.474129 | 3.4:-86924483 | None:intergenic |
| GGGCAAATCCACGGACCAAT+CGG | 0.479975 | 3.4:-86924561 | None:intergenic |
| TGATAGGAGGCTGAAGCAAA+TGG | 0.484670 | 3.4:+86926807 | MS.gene013332:CDS |
| TCCATTTCTTCGGGCTTCGT+AGG | 0.489521 | 3.4:+86924750 | MS.gene013332:CDS |
| TTCCTACAGAAGATCCTGAT+AGG | 0.493201 | 3.4:+86926791 | MS.gene013332:CDS |
| AATGGCTCCGGCGACAGCTC+CGG | 0.497607 | 3.4:+86924227 | None:intergenic |
| ATGGATCGATTAGCAGATCT+AGG | 0.502517 | 3.4:-86926904 | None:intergenic |
| CTGTGTGAGCAATGTGGGTC+CGG | 0.504059 | 3.4:+86924453 | MS.gene013332:CDS |
| CACGGTGGCTGAGGAGGAGG+AGG | 0.506420 | 3.4:+86924416 | MS.gene013332:CDS |
| CAGCTCCTCCGGTTGTTCAC+CGG | 0.511216 | 3.4:-86924472 | None:intergenic |
| TCGGAGACGTCCAAGACCTC+TGG | 0.514165 | 3.4:+86926732 | MS.gene013332:CDS |
| TGAGTACACGGTGGCTGAGG+AGG | 0.515374 | 3.4:+86924410 | MS.gene013332:CDS |
| CCCCAAGTGTTCTGATGTCA+AGG | 0.520959 | 3.4:+86924581 | MS.gene013332:CDS |
| CTCCTCCTCCTCGAAGGTGG+AGG | 0.525162 | 3.4:-86924346 | None:intergenic |
| TTTAGAGAACGGTGGCATGC+AGG | 0.534531 | 3.4:+86926927 | MS.gene013332:CDS |
| ACCTTGACATCAGAACACTT+GGG | 0.540926 | 3.4:-86924582 | None:intergenic |
| AACAATCGTGCTTCTTCTCA+GGG | 0.545517 | 3.4:+86924791 | MS.gene013332:CDS |
| GTACACGGTGGCTGAGGAGG+AGG | 0.545768 | 3.4:+86924413 | MS.gene013332:CDS |
| TTCGAGTTCCGATTGGTCCG+TGG | 0.546720 | 3.4:+86924553 | MS.gene013332:CDS |
| GGAGACGCCGGAGCTGTCGC+CGG | 0.559953 | 3.4:-86924234 | None:intergenic |
| ATTGTTGTTCGAGTTCCGAT+TGG | 0.560719 | 3.4:+86924546 | MS.gene013332:CDS |
| CTCGAAGGTGGAGGAAGAGG+AGG | 0.563327 | 3.4:-86924337 | None:intergenic |
| CCCCTCCTCCTCCTCGAAGG+TGG | 0.568245 | 3.4:-86924349 | None:intergenic |
| CAACCTCACCTGAATGGCTC+CGG | 0.568822 | 3.4:+86924215 | None:intergenic |
| ATGCTGTTAAAGCAGTAGCA+AGG | 0.571401 | 3.4:-86926834 | None:intergenic |
| TGCTGTTAAAGCAGTAGCAA+GGG | 0.574924 | 3.4:-86926833 | None:intergenic |
| CCACCTTCGAGGAGGAGGAG+GGG | 0.583605 | 3.4:+86924349 | MS.gene013332:CDS |
| TCCACCTTCGAGGAGGAGGA+GGG | 0.584045 | 3.4:+86924348 | MS.gene013332:CDS |
| CTTTAGATGCTATGAAGCGT+CGG | 0.589068 | 3.4:+86926713 | MS.gene013332:intron |
| ATTCCCCTCCTCCTCCTCGA+AGG | 0.589669 | 3.4:-86924352 | None:intergenic |
| CTTGATAGCTTGATGGAAGA+CGG | 0.590190 | 3.4:-86924261 | None:intergenic |
| GCTTGTTAATATATATAAGA+GGG | 0.591764 | 3.4:+86924386 | MS.gene013332:CDS |
| GCTGACGTACTTTCCAGGAA+TGG | 0.592256 | 3.4:+86926879 | MS.gene013332:CDS |
| CTCCTATCAGGATCTTCTGT+AGG | 0.592606 | 3.4:-86926793 | None:intergenic |
| GAACACTTGGGGCAAATCCA+CGG | 0.593747 | 3.4:-86924570 | None:intergenic |
| GAAGACGGCGATGGAGACGC+CGG | 0.596034 | 3.4:-86924246 | None:intergenic |
| CCTTGACATCAGAACACTTG+GGG | 0.598005 | 3.4:-86924581 | None:intergenic |
| ATATAAGAGGGCTGAGTACA+CGG | 0.598652 | 3.4:+86924398 | MS.gene013332:CDS |
| AGCTTGATGGAAGACGGCGA+TGG | 0.603823 | 3.4:-86924255 | None:intergenic |
| TTGTGTGACAAATGTGACAA+TGG | 0.614662 | 3.4:+86924498 | MS.gene013332:CDS |
| TGTGAGGTGCATGGGTGCGG+CGG | 0.615402 | 3.4:-86924290 | None:intergenic |
| CTCTTCCTCCACCTTCGAGG+AGG | 0.618161 | 3.4:+86924341 | MS.gene013332:CDS |
| CGGACCCACATTGCTCACAC+AGG | 0.629732 | 3.4:-86924452 | None:intergenic |
| CTACAGAAGATCCTGATAGG+AGG | 0.635132 | 3.4:+86926794 | MS.gene013332:CDS |
| ACCCACATTGCTCACACAGG+AGG | 0.655882 | 3.4:-86924449 | None:intergenic |
| GACCTCCTGTGTGAGCAATG+TGG | 0.660393 | 3.4:+86924447 | MS.gene013332:CDS |
| TGGTACAGAAGAAAAGGAGA+AGG | 0.674031 | 3.4:+86926755 | MS.gene013332:CDS |
| GAGACGTCCAAGACCTCTGG+TGG | 0.674893 | 3.4:+86926735 | MS.gene013332:CDS |
| TGGGTCCGGTGAACAACCGG+AGG | 0.676363 | 3.4:+86924467 | MS.gene013332:CDS |
| TAAGAGGGCTGAGTACACGG+TGG | 0.812154 | 3.4:+86924401 | MS.gene013332:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAAAAATATTTTTTTAT+TGG | + | chr3.4:86924851-86924870 | MS.gene013332:intron | 0.0% |
| !! | AAACATATGAATTAATTATT+TGG | + | chr3.4:86925132-86925151 | MS.gene013332:intron | 10.0% |
| !!! | ATCTTTAGAAAATATTTAAT+TGG | + | chr3.4:86926420-86926439 | MS.gene013332:intron | 10.0% |
| !! | AAAAGATTAAGTGATTAAGT+TGG | + | chr3.4:86926008-86926027 | MS.gene013332:intron | 20.0% |
| !! | AAAAGTTGTAGGAAAAAAAA+AGG | - | chr3.4:86926476-86926495 | None:intergenic | 20.0% |
| !! | AGTATAATTTGACATTAATG+TGG | + | chr3.4:86926102-86926121 | MS.gene013332:intron | 20.0% |
| !! | ATACATACATGATATCTAAT+TGG | + | chr3.4:86926657-86926676 | MS.gene013332:intron | 20.0% |
| !! | TCAAAACATAAAAAAGTTGT+AGG | - | chr3.4:86926487-86926506 | None:intergenic | 20.0% |
| !! | TTCAAATCAAACAATAGAAT+AGG | - | chr3.4:86925642-86925661 | None:intergenic | 20.0% |
| !!! | CAAAAGAACTAGAATTTTTT+TGG | + | chr3.4:86926215-86926234 | MS.gene013332:intron | 20.0% |
| !!! | GCTTGTTAATATATATAAGA+GGG | + | chr3.4:86924386-86924405 | MS.gene013332:CDS | 20.0% |
| !!! | TATTCTATTGTTTGATTTGA+AGG | + | chr3.4:86925641-86925660 | MS.gene013332:intron | 20.0% |
| !!! | TCGTGGATTATAAATATTTT+TGG | + | chr3.4:86925056-86925075 | MS.gene013332:intron | 20.0% |
| !!! | TTAAATTTTTGTGTGAACAT+GGG | + | chr3.4:86925162-86925181 | MS.gene013332:intron | 20.0% |
| !!! | TTGATTTGTTGTAGTTATTT+TGG | + | chr3.4:86925299-86925318 | MS.gene013332:intron | 20.0% |
| !!! | TTTAAATTTTTGTGTGAACA+TGG | + | chr3.4:86925161-86925180 | MS.gene013332:intron | 20.0% |
| ! | AACATTACTATCGCAAAAAT+AGG | - | chr3.4:86925475-86925494 | None:intergenic | 25.0% |
| ! | AAGAAAATTCTCCATTTCTT+CGG | + | chr3.4:86924740-86924759 | MS.gene013332:CDS | 25.0% |
| ! | ATGAAGGAACAAATATCAAA+AGG | - | chr3.4:86926312-86926331 | None:intergenic | 25.0% |
| ! | ATTTCGTACAAAGTCATTTA+GGG | - | chr3.4:86925813-86925832 | None:intergenic | 25.0% |
| ! | CAAATCAAGCTTAAAATTTG+TGG | - | chr3.4:86925287-86925306 | None:intergenic | 25.0% |
| ! | CAATGTTTGGATATTTGATT+TGG | + | chr3.4:86924924-86924943 | MS.gene013332:intron | 25.0% |
| ! | CGATAGTAATGTTAATCTTA+AGG | + | chr3.4:86925482-86925501 | MS.gene013332:intron | 25.0% |
| ! | TATTTCGTACAAAGTCATTT+AGG | - | chr3.4:86925814-86925833 | None:intergenic | 25.0% |
| ! | TCTTCTTAATTTATCCATTC+TGG | + | chr3.4:86926689-86926708 | MS.gene013332:intron | 25.0% |
| ! | TGAAGGAACAAATATCAAAA+GGG | - | chr3.4:86926311-86926330 | None:intergenic | 25.0% |
| ! | TGTGATTGTGATTATTAATG+TGG | + | chr3.4:86924673-86924692 | MS.gene013332:intron | 25.0% |
| ! | TGTTTCTTTACAAATTGTGT+TGG | + | chr3.4:86925229-86925248 | MS.gene013332:intron | 25.0% |
| !! | CGCTTGTTAATATATATAAG+AGG | + | chr3.4:86924385-86924404 | MS.gene013332:CDS | 25.0% |
| !! | TAAATTTTTGTGTGAACATG+GGG | + | chr3.4:86925163-86925182 | MS.gene013332:intron | 25.0% |
| !!! | AGATTGTTTCTGAAAATTTG+TGG | + | chr3.4:86925757-86925776 | MS.gene013332:intron | 25.0% |
| !!! | ATTGTTTCTGAAAATTTGTG+GGG | + | chr3.4:86925759-86925778 | MS.gene013332:intron | 25.0% |
| !!! | GATTGTTTCTGAAAATTTGT+GGG | + | chr3.4:86925758-86925777 | MS.gene013332:intron | 25.0% |
| !!! | TAGAATTTTTTTGGCTTACT+AGG | + | chr3.4:86926224-86926243 | MS.gene013332:intron | 25.0% |
| ACTTATTCTCTAGCAAATCA+TGG | - | chr3.4:86926149-86926168 | None:intergenic | 30.0% | |
| AGAAAATTCTCCATTTCTTC+GGG | + | chr3.4:86924741-86924760 | MS.gene013332:CDS | 30.0% | |
| ATAGAGATACCATCGTTTAA+TGG | + | chr3.4:86925940-86925959 | MS.gene013332:intron | 30.0% | |
| ATGCTTATGTTTACCTAGAA+TGG | + | chr3.4:86926355-86926374 | MS.gene013332:intron | 30.0% | |
| ATTACTATCGCAAAAATAGG+AGG | - | chr3.4:86925472-86925491 | None:intergenic | 30.0% | |
| ATTCCTTCACAAATTGGTTA+TGG | + | chr3.4:86925422-86925441 | MS.gene013332:intron | 30.0% | |
| CAATTTCAGCAAAAACATGA+AGG | - | chr3.4:86926328-86926347 | None:intergenic | 30.0% | |
| GTAAATGTGTTTACCATTCT+AGG | - | chr3.4:86926371-86926390 | None:intergenic | 30.0% | |
| TAAAGAAACATTGCCACAAA+CGG | - | chr3.4:86925219-86925238 | None:intergenic | 30.0% | |
| TGCATGACAAGTTATATGTA+AGG | + | chr3.4:86925559-86925578 | MS.gene013332:intron | 30.0% | |
| TTATATGTAAGGCAGCTATA+AGG | + | chr3.4:86925570-86925589 | MS.gene013332:intron | 30.0% | |
| TTGCTAGAGAATAAGTTACT+AGG | + | chr3.4:86926153-86926172 | MS.gene013332:intron | 30.0% | |
| TTTAATGGCACTTGAAATAG+AGG | + | chr3.4:86925955-86925974 | MS.gene013332:intron | 30.0% | |
| TTTACAAATTGTGTTGGACA+TGG | + | chr3.4:86925235-86925254 | MS.gene013332:intron | 30.0% | |
| ! | AGCTTCTTTTGAATTTTGTG+AGG | - | chr3.4:86924309-86924328 | None:intergenic | 30.0% |
| ! | CATTTTGTCAATGCAATGTT+TGG | + | chr3.4:86924911-86924930 | MS.gene013332:intron | 30.0% |
| ! | CTATAGATTTTTCCATCATC+AGG | + | chr3.4:86925259-86925278 | MS.gene013332:intron | 30.0% |
| !! | AATCGATCCATTTTAGAGAA+CGG | + | chr3.4:86926916-86926935 | MS.gene013332:CDS | 30.0% |
| !! | ATCTTTTGTGTCACTAAACA+TGG | - | chr3.4:86925995-86926014 | None:intergenic | 30.0% |
| !! | ATTGTTTGATTTGAAGGCAA+AGG | + | chr3.4:86925647-86925666 | MS.gene013332:intron | 30.0% |
| !! | GTTCTAACTTCAAAAGTACT+CGG | + | chr3.4:86926513-86926532 | MS.gene013332:intron | 30.0% |
| !! | GTTTTTGATCAGTTGTTGTT+TGG | + | chr3.4:86924960-86924979 | MS.gene013332:intron | 30.0% |
| !! | TTCTAACTTCAAAAGTACTC+GGG | + | chr3.4:86926514-86926533 | MS.gene013332:intron | 30.0% |
| !!! | TGTAGTTATTTTGGTGTCTT+GGG | + | chr3.4:86925308-86925327 | MS.gene013332:intron | 30.0% |
| !!! | TTGTAGTTATTTTGGTGTCT+TGG | + | chr3.4:86925307-86925326 | MS.gene013332:intron | 30.0% |
| AAAGAAACATTGCCACAAAC+GGG | - | chr3.4:86925218-86925237 | None:intergenic | 35.0% | |
| AGAAGAATTGAAATGGATGC+TGG | + | chr3.4:86926046-86926065 | MS.gene013332:intron | 35.0% | |
| ATGACAATTGCTAAGCAGTT+AGG | - | chr3.4:86925688-86925707 | None:intergenic | 35.0% | |
| ATGGTATCTCTATTGTCAAG+TGG | - | chr3.4:86925933-86925952 | None:intergenic | 35.0% | |
| CGGAACAAGAAGAATTGAAA+TGG | + | chr3.4:86926039-86926058 | MS.gene013332:intron | 35.0% | |
| GCTATCTGTTAAGGTAATAC+TGG | - | chr3.4:86925903-86925922 | None:intergenic | 35.0% | |
| TTGTGTGACAAATGTGACAA+TGG | + | chr3.4:86924498-86924517 | MS.gene013332:CDS | 35.0% | |
| ! | ATAGCATCTAAAGTCCAGAA+TGG | - | chr3.4:86926706-86926725 | None:intergenic | 35.0% |
| ! | GATTAAGCTTGATAGCTTGA+TGG | - | chr3.4:86924271-86924290 | None:intergenic | 35.0% |
| ! | GTACATTGAATCTTGATTCG+TGG | + | chr3.4:86925039-86925058 | MS.gene013332:intron | 35.0% |
| ! | TTGAATTTTGTGAGGTGCAT+GGG | - | chr3.4:86924301-86924320 | None:intergenic | 35.0% |
| ! | TTTCAAGTGCCATTAAACGA+TGG | - | chr3.4:86925952-86925971 | None:intergenic | 35.0% |
| ! | TTTGAATTTTGTGAGGTGCA+TGG | - | chr3.4:86924302-86924321 | None:intergenic | 35.0% |
| !! | CTTGAAATAGAGGCATCAAA+AGG | + | chr3.4:86925965-86925984 | MS.gene013332:intron | 35.0% |
| !! | TGATTAAGTTGGAGTCTTCA+CGG | + | chr3.4:86926019-86926038 | MS.gene013332:intron | 35.0% |
| !! | TTTCACTAGCTTGCAGATTT+TGG | + | chr3.4:86925598-86925617 | MS.gene013332:intron | 35.0% |
| !!! | TTTTGGCTTACTAGGTGTAT+AGG | + | chr3.4:86926232-86926251 | MS.gene013332:intron | 35.0% |
| AAATTTGTGGAGCCTGATGA+TGG | - | chr3.4:86925274-86925293 | None:intergenic | 40.0% | |
| AACAATCGTGCTTCTTCTCA+GGG | + | chr3.4:86924791-86924810 | MS.gene013332:CDS | 40.0% | |
| AATAAGCTGACGTACTTTCC+AGG | + | chr3.4:86926874-86926893 | MS.gene013332:CDS | 40.0% | |
| ACAAACGGGCAACTTTCATA+AGG | - | chr3.4:86925204-86925223 | None:intergenic | 40.0% | |
| ACCAATTTGTGAAGGAATGC+CGG | - | chr3.4:86925420-86925439 | None:intergenic | 40.0% | |
| ACCTTGACATCAGAACACTT+GGG | - | chr3.4:86924585-86924604 | None:intergenic | 40.0% | |
| ATATAAGAGGGCTGAGTACA+CGG | + | chr3.4:86924398-86924417 | MS.gene013332:CDS | 40.0% | |
| ATCGGAACTCGAACAACAAT+TGG | - | chr3.4:86924546-86924565 | None:intergenic | 40.0% | |
| ATGCTGTTAAAGCAGTAGCA+AGG | - | chr3.4:86926837-86926856 | None:intergenic | 40.0% | |
| ATGGATCGATTAGCAGATCT+AGG | - | chr3.4:86926907-86926926 | None:intergenic | 40.0% | |
| CCACCATAACCAATTTGTGA+AGG | - | chr3.4:86925428-86925447 | None:intergenic | 40.0% | |
| CCTTCACAAATTGGTTATGG+TGG | + | chr3.4:86925425-86925444 | MS.gene013332:intron | 40.0% | |
| CTTTAGATGCTATGAAGCGT+CGG | + | chr3.4:86926713-86926732 | MS.gene013332:intron | 40.0% | |
| GGATCTTCTGTAGGAACAAA+TGG | - | chr3.4:86926787-86926806 | None:intergenic | 40.0% | |
| GGTTCTTGAGCTATCTGTTA+AGG | - | chr3.4:86925912-86925931 | None:intergenic | 40.0% | |
| GTTGCAATGGCGTGTTTATA+TGG | - | chr3.4:86925379-86925398 | None:intergenic | 40.0% | |
| TAAGCAGTTAGGCGTTTGAT+CGG | - | chr3.4:86925677-86925696 | None:intergenic | 40.0% | |
| TGCTACTGCTTTAACAGCAT+TGG | + | chr3.4:86926837-86926856 | MS.gene013332:CDS | 40.0% | |
| TGCTGTTAAAGCAGTAGCAA+GGG | - | chr3.4:86926836-86926855 | None:intergenic | 40.0% | |
| TGGTACAGAAGAAAAGGAGA+AGG | + | chr3.4:86926755-86926774 | MS.gene013332:CDS | 40.0% | |
| TTATGAAAGTTGCCCGTTTG+TGG | + | chr3.4:86925203-86925222 | MS.gene013332:intron | 40.0% | |
| TTCCTACAGAAGATCCTGAT+AGG | + | chr3.4:86926791-86926810 | MS.gene013332:CDS | 40.0% | |
| ! | ATTGTTGTTCGAGTTCCGAT+TGG | + | chr3.4:86924546-86924565 | MS.gene013332:CDS | 40.0% |
| ! | CTTGATAGCTTGATGGAAGA+CGG | - | chr3.4:86924264-86924283 | None:intergenic | 40.0% |
| !! | GTTTGATTTGAAGGCAAAGG+AGG | + | chr3.4:86925650-86925669 | MS.gene013332:intron | 40.0% |
| !! | TTGGCTTTGTGAAAGTGATG+TGG | + | chr3.4:86924979-86924998 | MS.gene013332:intron | 40.0% |
| AAACACGCCATTGCAACCTA+AGG | + | chr3.4:86925382-86925401 | MS.gene013332:intron | 45.0% | |
| AAGCAGTTAGGCGTTTGATC+GGG | - | chr3.4:86925676-86925695 | None:intergenic | 45.0% | |
| ATCGCAAAAATAGGAGGCCA+TGG | - | chr3.4:86925466-86925485 | None:intergenic | 45.0% | |
| ATTTGCTTCAGCCTCCTATC+AGG | - | chr3.4:86926808-86926827 | None:intergenic | 45.0% | |
| CCTTGACATCAGAACACTTG+GGG | - | chr3.4:86924584-86924603 | None:intergenic | 45.0% | |
| CGTAGGGATTCTCTTGATTC+CGG | + | chr3.4:86924767-86924786 | MS.gene013332:CDS | 45.0% | |
| CTACAGAAGATCCTGATAGG+AGG | + | chr3.4:86926794-86926813 | MS.gene013332:CDS | 45.0% | |
| CTCCTATCAGGATCTTCTGT+AGG | - | chr3.4:86926796-86926815 | None:intergenic | 45.0% | |
| CTCTGGTGGTACAGAAGAAA+AGG | + | chr3.4:86926749-86926768 | MS.gene013332:CDS | 45.0% | |
| GAACAATCGTGCTTCTTCTC+AGG | + | chr3.4:86924790-86924809 | MS.gene013332:CDS | 45.0% | |
| GACCTTGACATCAGAACACT+TGG | - | chr3.4:86924586-86924605 | None:intergenic | 45.0% | |
| GAGTTGAGTAATGCTGTCGA+TGG | + | chr3.4:86925335-86925354 | MS.gene013332:intron | 45.0% | |
| GCAATGGCGTGTTTATATGG+CGG | - | chr3.4:86925376-86925395 | None:intergenic | 45.0% | |
| GTAGGGATTCTCTTGATTCC+GGG | + | chr3.4:86924768-86924787 | MS.gene013332:CDS | 45.0% | |
| TGATAGGAGGCTGAAGCAAA+TGG | + | chr3.4:86926807-86926826 | MS.gene013332:CDS | 45.0% | |
| TTGAGTAATGCTGTCGATGG+CGG | + | chr3.4:86925338-86925357 | MS.gene013332:intron | 45.0% | |
| ! | AGAAGAAGCACGATTGTTCC+CGG | - | chr3.4:86924789-86924808 | None:intergenic | 45.0% |
| ! | CATGCCACCGTTCTCTAAAA+TGG | - | chr3.4:86926926-86926945 | None:intergenic | 45.0% |
| ! | CTTTTCTTCTGTACCACCAG+AGG | - | chr3.4:86926751-86926770 | None:intergenic | 45.0% |
| ! | TTGTGGGGATTCTAGCTATG+TGG | + | chr3.4:86925774-86925793 | MS.gene013332:intron | 45.0% |
| !! | CGATCCATTTTAGAGAACGG+TGG | + | chr3.4:86926919-86926938 | MS.gene013332:CDS | 45.0% |
| !! | CTTGCAGATTTTGGTGCAAC+TGG | + | chr3.4:86925607-86925626 | MS.gene013332:intron | 45.0% |
| ACCTCCTGTGTGAGCAATGT+GGG | + | chr3.4:86924448-86924467 | MS.gene013332:CDS | 50.0% | |
| CCATTTCTTCGGGCTTCGTA+GGG | + | chr3.4:86924751-86924770 | MS.gene013332:CDS | 50.0% | |
| CCCCAAGTGTTCTGATGTCA+AGG | + | chr3.4:86924581-86924600 | MS.gene013332:CDS | 50.0% | |
| GAACACTTGGGGCAAATCCA+CGG | - | chr3.4:86924573-86924592 | None:intergenic | 50.0% | |
| GCAAAAATAGGAGGCCATGG+CGG | - | chr3.4:86925463-86925482 | None:intergenic | 50.0% | |
| GCCGGCATTCCTTCACAAAT+TGG | + | chr3.4:86925416-86925435 | MS.gene013332:intron | 50.0% | |
| GCTGACGTACTTTCCAGGAA+TGG | + | chr3.4:86926879-86926898 | MS.gene013332:CDS | 50.0% | |
| GGTTACCGAAAAATCCGCCA+TGG | + | chr3.4:86925446-86925465 | MS.gene013332:intron | 50.0% | |
| TCACACAAAAGCAGCTCCTC+CGG | - | chr3.4:86924486-86924505 | None:intergenic | 50.0% | |
| TCCATTTCTTCGGGCTTCGT+AGG | + | chr3.4:86924750-86924769 | MS.gene013332:CDS | 50.0% | |
| TGTGAAGGAATGCCGGCAAA+TGG | - | chr3.4:86925413-86925432 | None:intergenic | 50.0% | |
| TTCTGTACCACCAGAGGTCT+TGG | - | chr3.4:86926745-86926764 | None:intergenic | 50.0% | |
| TTTAGAGAACGGTGGCATGC+AGG | + | chr3.4:86926927-86926946 | MS.gene013332:CDS | 50.0% | |
| ! | TTTTGTGAGGTGCATGGGTG+CGG | - | chr3.4:86924296-86924315 | None:intergenic | 50.0% |
| ACCCACATTGCTCACACAGG+AGG | - | chr3.4:86924452-86924471 | None:intergenic | 55.0% | |
| AGCTTGATGGAAGACGGCGA+TGG | - | chr3.4:86924258-86924277 | None:intergenic | 55.0% | |
| ATGTGGGTCCGGTGAACAAC+CGG | + | chr3.4:86924464-86924483 | MS.gene013332:CDS | 55.0% | |
| CCCTACGAAGCCCGAAGAAA+TGG | - | chr3.4:86924754-86924773 | None:intergenic | 55.0% | |
| CTGTGTGAGCAATGTGGGTC+CGG | + | chr3.4:86924453-86924472 | MS.gene013332:CDS | 55.0% | |
| GAAGGAATGCCGGCAAATGG+TGG | - | chr3.4:86925410-86925429 | None:intergenic | 55.0% | |
| GACCTCCTGTGTGAGCAATG+TGG | + | chr3.4:86924447-86924466 | MS.gene013332:CDS | 55.0% | |
| GCAGATCTAGGAGCCATTCC+TGG | - | chr3.4:86926895-86926914 | None:intergenic | 55.0% | |
| GCTGAGGAGGAGGAGGATTA+CGG | + | chr3.4:86924423-86924442 | MS.gene013332:CDS | 55.0% | |
| GGGCAAATCCACGGACCAAT+CGG | - | chr3.4:86924564-86924583 | None:intergenic | 55.0% | |
| TAAGAGGGCTGAGTACACGG+TGG | + | chr3.4:86924401-86924420 | MS.gene013332:CDS | 55.0% | |
| ! | TTCGAGTTCCGATTGGTCCG+TGG | + | chr3.4:86924553-86924572 | MS.gene013332:CDS | 55.0% |
| !! | GTAATGCTGTCGATGGCGGA+AGG | + | chr3.4:86925342-86925361 | MS.gene013332:intron | 55.0% |
| !!! | GGAGGCCATGGCGGATTTTT+CGG | - | chr3.4:86925454-86925473 | None:intergenic | 55.0% |
| ATTCCCCTCCTCCTCCTCGA+AGG | - | chr3.4:86924355-86924374 | None:intergenic | 60.0% | |
| CAGCTCCTCCGGTTGTTCAC+CGG | - | chr3.4:86924475-86924494 | None:intergenic | 60.0% | |
| CGGACCCACATTGCTCACAC+AGG | - | chr3.4:86924455-86924474 | None:intergenic | 60.0% | |
| CTCCTCGAAGGTGGAGGAAG+AGG | - | chr3.4:86924343-86924362 | None:intergenic | 60.0% | |
| CTCCTCTTCCTCCACCTTCG+AGG | + | chr3.4:86924338-86924357 | MS.gene013332:CDS | 60.0% | |
| CTCGAAGGTGGAGGAAGAGG+AGG | - | chr3.4:86924340-86924359 | None:intergenic | 60.0% | |
| CTCTTCCTCCACCTTCGAGG+AGG | + | chr3.4:86924341-86924360 | MS.gene013332:CDS | 60.0% | |
| GAGACGTCCAAGACCTCTGG+TGG | + | chr3.4:86926735-86926754 | MS.gene013332:CDS | 60.0% | |
| TCCACCTTCGAGGAGGAGGA+GGG | + | chr3.4:86924348-86924367 | MS.gene013332:CDS | 60.0% | |
| TCGGAGACGTCCAAGACCTC+TGG | + | chr3.4:86926732-86926751 | MS.gene013332:CDS | 60.0% | |
| TGAGTACACGGTGGCTGAGG+AGG | + | chr3.4:86924410-86924429 | MS.gene013332:CDS | 60.0% | |
| TTCCTCCACCTTCGAGGAGG+AGG | + | chr3.4:86924344-86924363 | MS.gene013332:CDS | 60.0% | |
| ! | CCTAAGGCGCCACCATTTGC+CGG | + | chr3.4:86925398-86925417 | MS.gene013332:intron | 60.0% |
| ! | GGTGGCGCCTTAGGTTGCAA+TGG | - | chr3.4:86925392-86925411 | None:intergenic | 60.0% |
| CCACCTTCGAGGAGGAGGAG+GGG | + | chr3.4:86924349-86924368 | MS.gene013332:CDS | 65.0% | |
| CTCCACCTTCGAGGAGGAGG+AGG | + | chr3.4:86924347-86924366 | MS.gene013332:CDS | 65.0% | |
| CTCCTCCTCCTCGAAGGTGG+AGG | - | chr3.4:86924349-86924368 | None:intergenic | 65.0% | |
| GAAGACGGCGATGGAGACGC+CGG | - | chr3.4:86924249-86924268 | None:intergenic | 65.0% | |
| GGCTGAGTACACGGTGGCTG+AGG | + | chr3.4:86924407-86924426 | MS.gene013332:CDS | 65.0% | |
| GTACACGGTGGCTGAGGAGG+AGG | + | chr3.4:86924413-86924432 | MS.gene013332:CDS | 65.0% | |
| TGGGTCCGGTGAACAACCGG+AGG | + | chr3.4:86924467-86924486 | MS.gene013332:CDS | 65.0% | |
| TGTGAGGTGCATGGGTGCGG+CGG | - | chr3.4:86924293-86924312 | None:intergenic | 65.0% | |
| ! | CCGGCAAATGGTGGCGCCTT+AGG | - | chr3.4:86925401-86925420 | None:intergenic | 65.0% |
| CACGGTGGCTGAGGAGGAGG+AGG | + | chr3.4:86924416-86924435 | MS.gene013332:CDS | 70.0% | |
| CCCCTCCTCCTCCTCGAAGG+TGG | - | chr3.4:86924352-86924371 | None:intergenic | 70.0% | |
| GGAGACGCCGGAGCTGTCGC+CGG | - | chr3.4:86924237-86924256 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 86924228 | 86926963 | 86924228 | ID=MS.gene013332 |
| chr3.4 | mRNA | 86924228 | 86926963 | 86924228 | ID=MS.gene013332.t1;Parent=MS.gene013332 |
| chr3.4 | exon | 86924228 | 86924618 | 86924228 | ID=MS.gene013332.t1.exon1;Parent=MS.gene013332.t1 |
| chr3.4 | CDS | 86924228 | 86924618 | 86924228 | ID=cds.MS.gene013332.t1;Parent=MS.gene013332.t1 |
| chr3.4 | exon | 86924729 | 86924812 | 86924729 | ID=MS.gene013332.t1.exon2;Parent=MS.gene013332.t1 |
| chr3.4 | CDS | 86924729 | 86924812 | 86924729 | ID=cds.MS.gene013332.t1;Parent=MS.gene013332.t1 |
| chr3.4 | exon | 86926719 | 86926963 | 86926719 | ID=MS.gene013332.t1.exon3;Parent=MS.gene013332.t1 |
| chr3.4 | CDS | 86926719 | 86926963 | 86926719 | ID=cds.MS.gene013332.t1;Parent=MS.gene013332.t1 |
| Gene Sequence |
| Protein sequence |
