Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013357.t1 | XP_003602530.1 | 93.6 | 357 | 23 | 0 | 1 | 357 | 1 | 357 | 3.90E-152 | 547.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013357.t1 | F4KFC7 | 51.4 | 364 | 159 | 8 | 1 | 357 | 1 | 353 | 2.0e-56 | 221.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013357.t1 | G7JAV9 | 93.6 | 357 | 23 | 0 | 1 | 357 | 1 | 357 | 2.8e-152 | 547.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013357.t1 | TR | IWS1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013357.t1 | MTR_3g095380 | 98.039 | 357 | 7 | 0 | 1 | 357 | 1 | 357 | 0.0 | 723 |
| MS.gene013357.t1 | MTR_3g095380 | 97.799 | 318 | 7 | 0 | 1 | 318 | 1 | 318 | 0.0 | 639 |
| MS.gene013357.t1 | MTR_7g089140 | 31.163 | 215 | 119 | 5 | 3 | 200 | 6 | 208 | 2.43e-23 | 100 |
| MS.gene013357.t1 | MTR_7g089140 | 31.163 | 215 | 119 | 5 | 3 | 200 | 9 | 211 | 2.46e-23 | 100 |
| MS.gene013357.t1 | MTR_7g089140 | 31.163 | 215 | 119 | 5 | 3 | 200 | 9 | 211 | 1.96e-22 | 96.7 |
| MS.gene013357.t1 | MTR_7g089140 | 31.163 | 215 | 119 | 5 | 3 | 200 | 6 | 208 | 2.14e-22 | 96.7 |
| MS.gene013357.t1 | MTR_6g041880 | 52.000 | 75 | 34 | 2 | 52 | 126 | 7 | 79 | 5.43e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013357.t1 | AT5G09850 | 53.804 | 368 | 144 | 10 | 1 | 357 | 1 | 353 | 9.49e-117 | 342 |
| MS.gene013357.t1 | AT5G09850 | 53.804 | 368 | 144 | 10 | 1 | 357 | 1 | 353 | 9.49e-117 | 342 |
| MS.gene013357.t1 | AT5G09850 | 53.804 | 368 | 144 | 10 | 1 | 357 | 1 | 353 | 9.49e-117 | 342 |
| MS.gene013357.t1 | AT5G09850 | 53.804 | 368 | 144 | 10 | 1 | 357 | 1 | 353 | 9.49e-117 | 342 |
| MS.gene013357.t1 | AT5G09850 | 51.632 | 337 | 140 | 8 | 1 | 326 | 1 | 325 | 1.95e-99 | 298 |
| MS.gene013357.t1 | AT5G05140 | 25.485 | 412 | 221 | 13 | 3 | 334 | 7 | 412 | 2.84e-21 | 94.7 |
| MS.gene013357.t1 | AT3G10820 | 29.500 | 200 | 117 | 6 | 1 | 199 | 8 | 184 | 3.78e-15 | 76.6 |
| MS.gene013357.t1 | AT3G10820 | 28.000 | 200 | 120 | 4 | 1 | 199 | 8 | 184 | 9.80e-15 | 75.9 |
Find 95 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGGAACTGATTTAGGTTT+TGG | 0.207613 | 3.4:-86676679 | None:intergenic |
| GCAGAGGTAGGGGCAGTAAC+TGG | 0.242308 | 3.4:-86676736 | None:intergenic |
| GACTGTTCTCTTTCTTGATT+TGG | 0.252210 | 3.4:-86675518 | None:intergenic |
| CTATTCTCACTGTGTGGATT+TGG | 0.266353 | 3.4:-86676528 | None:intergenic |
| CCTGATGATTATGCCCATTT+GGG | 0.274665 | 3.4:-86676401 | None:intergenic |
| GTTGACCTCCGTCGCAATTC+TGG | 0.284508 | 3.4:-86675476 | None:intergenic |
| TCTTTGCGAGGAACTGATTT+AGG | 0.295138 | 3.4:-86676685 | None:intergenic |
| ACCTGATGATTATGCCCATT+TGG | 0.307811 | 3.4:-86676402 | None:intergenic |
| ACACGGCGGGCGTTGACGTC+TGG | 0.362780 | 3.4:+86675334 | MS.gene013357:CDS |
| TCAGTCTGAAGATACTTTGA+TGG | 0.368003 | 3.4:+86675822 | MS.gene013357:intron |
| CCGCGGCGCGGTTGTCGTTC+CGG | 0.369159 | 3.4:-86675552 | None:intergenic |
| GATGGAGTTGCTACAAAATC+TGG | 0.369937 | 3.4:+86675840 | MS.gene013357:CDS |
| CAGAGGTAGGGGCAGTAACT+GGG | 0.397450 | 3.4:-86676735 | None:intergenic |
| GGAAAGAAATTGTTGATGAT+TGG | 0.408203 | 3.4:+86676191 | MS.gene013357:CDS |
| TTGCAGAAAACCACCCCAAA+TGG | 0.410008 | 3.4:+86676387 | MS.gene013357:CDS |
| GTTCAGCTTCGGAGGTGTTA+CGG | 0.414057 | 3.4:-86676651 | None:intergenic |
| AACTACAAAGAGGCCGATAA+TGG | 0.421647 | 3.4:+86676957 | MS.gene013357:CDS |
| AATCAATCACCTTCAACTCT+TGG | 0.433018 | 3.4:-86675882 | None:intergenic |
| AATCGACGAACATTGCTTGA+TGG | 0.437135 | 3.4:-86676052 | None:intergenic |
| TTTGGAGAGTACGCAAAATC+AGG | 0.441104 | 3.4:-86676510 | None:intergenic |
| TATTACATTCCAAGAGTTGA+AGG | 0.441822 | 3.4:+86675873 | MS.gene013357:CDS |
| AGAGGTAGGGGCAGTAACTG+GGG | 0.442679 | 3.4:-86676734 | None:intergenic |
| CGCGATCTCCGTCGCTGCGC+AGG | 0.445659 | 3.4:+86675371 | MS.gene013357:CDS |
| GAGGTAGGGGCAGTAACTGG+GGG | 0.447109 | 3.4:-86676733 | None:intergenic |
| GCTTCTAGAAGATCCTCAAC+AGG | 0.452369 | 3.4:+86675695 | MS.gene013357:CDS |
| GAAAGAAATTGTTGATGATT+GGG | 0.457864 | 3.4:+86676192 | MS.gene013357:CDS |
| GCTGACACAGATGGGAGCTC+TGG | 0.459360 | 3.4:+86676622 | MS.gene013357:intron |
| CCGTCGCAATTCTGGCAAAT+CGG | 0.468609 | 3.4:-86675468 | None:intergenic |
| GTTCTCAAGGAAGGCAGCAC+TGG | 0.479451 | 3.4:+86677164 | MS.gene013357:CDS |
| CCCAAATGGGCATAATCATC+AGG | 0.480623 | 3.4:+86676401 | MS.gene013357:CDS |
| AGGTAGGGGCAGTAACTGGG+GGG | 0.499817 | 3.4:-86676732 | None:intergenic |
| TTTCCTTCAGACTGCGGCGT+CGG | 0.501959 | 3.4:-86675591 | None:intergenic |
| ATCAAGCAATGTTCGTCGAT+TGG | 0.507263 | 3.4:+86676054 | MS.gene013357:CDS |
| AAGAGGGAAAAGCACTCTCA+TGG | 0.508075 | 3.4:+86676231 | MS.gene013357:CDS |
| TGCAGAAAACCACCCCAAAT+GGG | 0.518736 | 3.4:+86676388 | MS.gene013357:CDS |
| CCTTCAGACTGCGGCGTCGG+AGG | 0.522259 | 3.4:-86675588 | None:intergenic |
| GGCTTGCTGCTGCAAGAAAA+CGG | 0.522716 | 3.4:+86676925 | MS.gene013357:CDS |
| TGTCGTTCCGGACTCAGACT+AGG | 0.527954 | 3.4:-86675540 | None:intergenic |
| CCTAAGTCAAAAGCAAAGAA+TGG | 0.530585 | 3.4:+86677112 | MS.gene013357:CDS |
| ATAACGCCGGTGAGCTAAAG+AGG | 0.531488 | 3.4:+86675394 | MS.gene013357:CDS |
| GCAAAGAACAATTCAGGTGA+TGG | 0.534043 | 3.4:+86677075 | MS.gene013357:CDS |
| GAACAGTCCTAGTCTGAGTC+CGG | 0.534784 | 3.4:+86675533 | MS.gene013357:CDS |
| CCTCCGACGCCGCAGTCTGA+AGG | 0.534970 | 3.4:+86675588 | MS.gene013357:CDS |
| AAAGGTGGTGGCAGTTCTCA+AGG | 0.538937 | 3.4:+86677151 | MS.gene013357:CDS |
| TTTGTGTAGGAAACTGACAT+AGG | 0.539813 | 3.4:+86676001 | MS.gene013357:intron |
| TTTGCAAAGCACAAAGGTGG+TGG | 0.542006 | 3.4:+86677139 | MS.gene013357:CDS |
| CATTCTGAGGAGCAGAGGTA+GGG | 0.542374 | 3.4:-86676747 | None:intergenic |
| ATTCTGAGGAGCAGAGGTAG+GGG | 0.547934 | 3.4:-86676746 | None:intergenic |
| TAATTAAACAAAACCTGTTG+AGG | 0.556852 | 3.4:-86675708 | None:intergenic |
| GGTAGGGGCAGTAACTGGGG+GGG | 0.560913 | 3.4:-86676731 | None:intergenic |
| TTGTGTAGGAAACTGACATA+GGG | 0.564467 | 3.4:+86676002 | MS.gene013357:intron |
| GGCGTTATCCTGCGCAGCGA+CGG | 0.566982 | 3.4:-86675379 | None:intergenic |
| GTGAAGCAGAATCCACAAAG+AGG | 0.569929 | 3.4:+86676214 | MS.gene013357:CDS |
| TTTGGAGGTGGGTCTTTGCG+AGG | 0.573343 | 3.4:-86676697 | None:intergenic |
| ATGATTATGCCCATTTGGGG+TGG | 0.576734 | 3.4:-86676397 | None:intergenic |
| AGAGGGAAAAGCACTCTCAT+GGG | 0.577480 | 3.4:+86676232 | MS.gene013357:CDS |
| GAGGAGAAGAGACGGAATCG+TGG | 0.579304 | 3.4:+86675413 | MS.gene013357:CDS |
| ATTCAAAACCGTACATTCTG+AGG | 0.580864 | 3.4:-86676760 | None:intergenic |
| ACATTCTGAGGAGCAGAGGT+AGG | 0.580912 | 3.4:-86676748 | None:intergenic |
| AGCTTCGGAGGTGTTACGGT+CGG | 0.581005 | 3.4:-86676647 | None:intergenic |
| GAGCTAAAGAGGAGAAGAGA+CGG | 0.582096 | 3.4:+86675405 | MS.gene013357:CDS |
| CGATCTATATTACACACGGC+GGG | 0.584757 | 3.4:+86675321 | MS.gene013357:CDS |
| GAACGACAACCGCGCCGCGG+CGG | 0.588629 | 3.4:+86675555 | MS.gene013357:CDS |
| TCTTCTCCTCTTTAGCTCAC+CGG | 0.592478 | 3.4:-86675400 | None:intergenic |
| TCATCAAACAAACCACCGTA+AGG | 0.594373 | 3.4:-86675642 | None:intergenic |
| GATGAGGAGATAGATCCTTA+CGG | 0.597718 | 3.4:+86675627 | MS.gene013357:CDS |
| CCGCCGTGTGTAATATAGAT+CGG | 0.605511 | 3.4:-86675320 | None:intergenic |
| TACTTTGCAAAGCACAAAGG+TGG | 0.607829 | 3.4:+86677136 | MS.gene013357:CDS |
| AAACGAAGACGGTGAAGATG+AGG | 0.609578 | 3.4:+86675611 | MS.gene013357:CDS |
| GAAGAAGCTCCGCCGCGGCG+CGG | 0.611025 | 3.4:-86675564 | None:intergenic |
| CTGCGCAGCGACGGAGATCG+CGG | 0.611264 | 3.4:-86675370 | None:intergenic |
| CCGATTTGCCAGAATTGCGA+CGG | 0.612546 | 3.4:+86675468 | MS.gene013357:CDS |
| TGAAGCAGAATCCACAAAGA+GGG | 0.616018 | 3.4:+86676215 | MS.gene013357:CDS |
| CGGAAATCGTCCAAATCCAT+CGG | 0.620451 | 3.4:-86675300 | None:intergenic |
| GTGGTGGCAGTTCTCAAGGA+AGG | 0.622677 | 3.4:+86677155 | MS.gene013357:CDS |
| CCGTACATTCTGAGGAGCAG+AGG | 0.628754 | 3.4:-86676752 | None:intergenic |
| CTGATGATTATGCCCATTTG+GGG | 0.635715 | 3.4:-86676400 | None:intergenic |
| CAGTCTGAAGGAAACGAAGA+CGG | 0.636870 | 3.4:+86675600 | MS.gene013357:CDS |
| ATTTGCCAGAATTGCGACGG+AGG | 0.638773 | 3.4:+86675471 | MS.gene013357:CDS |
| GCGTCTCTACGCTGCCACCA+CGG | 0.639790 | 3.4:+86675437 | MS.gene013357:CDS |
| GGTTACTTTGCAAAGCACAA+AGG | 0.645193 | 3.4:+86677133 | MS.gene013357:CDS |
| AAGACCCACCTCCAAAACCA+AGG | 0.647167 | 3.4:+86676704 | MS.gene013357:CDS |
| GGAGTTGCTACAAAATCTGG+TGG | 0.648131 | 3.4:+86675843 | MS.gene013357:CDS |
| TGTAGGAAACTGACATAGGG+AGG | 0.652621 | 3.4:+86676005 | MS.gene013357:intron |
| CCGGAACGACAACCGCGCCG+CGG | 0.654440 | 3.4:+86675552 | MS.gene013357:CDS |
| GTCGCTGCGCAGGATAACGC+CGG | 0.655654 | 3.4:+86675381 | MS.gene013357:CDS |
| GCTTCAAGCGAACTACAAAG+AGG | 0.673966 | 3.4:+86676947 | MS.gene013357:CDS |
| TCTTCGTTTCCTTCAGACTG+CGG | 0.687107 | 3.4:-86675597 | None:intergenic |
| GAGGAGAAGAAGCTCCGCCG+CGG | 0.688012 | 3.4:-86675569 | None:intergenic |
| TTTCCGATCTATATTACACA+CGG | 0.691280 | 3.4:+86675317 | MS.gene013357:CDS |
| AATCGGAGTAACCTCCGTGG+TGG | 0.706021 | 3.4:-86675451 | None:intergenic |
| GAGGAGATAGATCCTTACGG+TGG | 0.724438 | 3.4:+86675630 | MS.gene013357:CDS |
| CCGATCTATATTACACACGG+CGG | 0.755687 | 3.4:+86675320 | MS.gene013357:CDS |
| GCAAATCGGAGTAACCTCCG+TGG | 0.764862 | 3.4:-86675454 | None:intergenic |
| TCTCTACGCTGCCACCACGG+AGG | 0.775314 | 3.4:+86675440 | MS.gene013357:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTCAATTTTTAATGT+TGG | + | chr3.4:86675929-86675948 | MS.gene013357:intron | 10.0% |
| !!! | AACAAATTTTCAACCATTAT+CGG | - | chr3.4:86676973-86676992 | None:intergenic | 20.0% |
| !!! | ATGGGTAATGTTAATATTTT+TGG | + | chr3.4:86676250-86676269 | MS.gene013357:intron | 20.0% |
| !!! | GATTTGTTTTTTATTTGTGT+AGG | + | chr3.4:86675988-86676007 | MS.gene013357:intron | 20.0% |
| !!! | TGGGTAATGTTAATATTTTT+GGG | + | chr3.4:86676251-86676270 | MS.gene013357:intron | 20.0% |
| !!! | TTTTTGTTAAAGTTTGTTGT+TGG | + | chr3.4:86676784-86676803 | MS.gene013357:intron | 20.0% |
| ! | AAAAAAGCAAAGAACAATTC+AGG | + | chr3.4:86677069-86677088 | MS.gene013357:CDS | 25.0% |
| ! | ACTTCACAAAATTAACACTA+GGG | - | chr3.4:86676833-86676852 | None:intergenic | 25.0% |
| ! | GTTAAAAAGTAGGAAGTTAA+AGG | + | chr3.4:86676289-86676308 | MS.gene013357:intron | 25.0% |
| ! | TAATTAAACAAAACCTGTTG+AGG | - | chr3.4:86675711-86675730 | None:intergenic | 25.0% |
| ! | TTGTCAAAGAGTTAAAAAGT+AGG | + | chr3.4:86676279-86676298 | MS.gene013357:intron | 25.0% |
| !!! | GAAAGAAATTGTTGATGATT+GGG | + | chr3.4:86676192-86676211 | MS.gene013357:CDS | 25.0% |
| !!! | GTGAATTTTTGATTATGTGT+AGG | + | chr3.4:86676164-86676183 | MS.gene013357:intron | 25.0% |
| ATCAACCAAATGCAAACAAA+AGG | - | chr3.4:86676589-86676608 | None:intergenic | 30.0% | |
| ATTCGTGTGAAATTCGTTAA+TGG | + | chr3.4:86676321-86676340 | MS.gene013357:intron | 30.0% | |
| CAACAAGGTTAAAGGAATAT+TGG | - | chr3.4:86676563-86676582 | None:intergenic | 30.0% | |
| CACTTCACAAAATTAACACT+AGG | - | chr3.4:86676834-86676853 | None:intergenic | 30.0% | |
| CTTCACAAAATTAACACTAG+GGG | - | chr3.4:86676832-86676851 | None:intergenic | 30.0% | |
| TAAACAACACACGAAACTTT+AGG | - | chr3.4:86677045-86677064 | None:intergenic | 30.0% | |
| TATTACATTCCAAGAGTTGA+AGG | + | chr3.4:86675873-86675892 | MS.gene013357:CDS | 30.0% | |
| TTTCCGATCTATATTACACA+CGG | + | chr3.4:86675317-86675336 | MS.gene013357:CDS | 30.0% | |
| !! | GGAAAGAAATTGTTGATGAT+TGG | + | chr3.4:86676191-86676210 | MS.gene013357:CDS | 30.0% |
| !! | TTTTGATTATGTGTAGGAAG+TGG | + | chr3.4:86676170-86676189 | MS.gene013357:intron | 30.0% |
| !!! | AATGCTGTTTTTTGTAGCAT+TGG | + | chr3.4:86676133-86676152 | MS.gene013357:intron | 30.0% |
| !!! | ACTGATTTAGGTTTTGGTTT+TGG | - | chr3.4:86676676-86676695 | None:intergenic | 30.0% |
| AAGTAGGAAGTTAAAGGAGT+TGG | + | chr3.4:86676295-86676314 | MS.gene013357:intron | 35.0% | |
| AATCAATCACCTTCAACTCT+TGG | - | chr3.4:86675885-86675904 | None:intergenic | 35.0% | |
| ATTCAAAACCGTACATTCTG+AGG | - | chr3.4:86676763-86676782 | None:intergenic | 35.0% | |
| CCTAAGTCAAAAGCAAAGAA+TGG | + | chr3.4:86677112-86677131 | MS.gene013357:CDS | 35.0% | |
| GACTGTTCTCTTTCTTGATT+TGG | - | chr3.4:86675521-86675540 | None:intergenic | 35.0% | |
| TATTCAACATTTGCAGCTGA+TGG | + | chr3.4:86676354-86676373 | MS.gene013357:intron | 35.0% | |
| TCAGTCTGAAGATACTTTGA+TGG | + | chr3.4:86675822-86675841 | MS.gene013357:intron | 35.0% | |
| TTGTGTAGGAAACTGACATA+GGG | + | chr3.4:86676002-86676021 | MS.gene013357:intron | 35.0% | |
| TTTGTGTAGGAAACTGACAT+AGG | + | chr3.4:86676001-86676020 | MS.gene013357:intron | 35.0% | |
| !! | AAAGGCATCAACAAGGTTAA+AGG | - | chr3.4:86676571-86676590 | None:intergenic | 35.0% |
| !! | TGATGCCTTTTGTTTGCATT+TGG | + | chr3.4:86676581-86676600 | MS.gene013357:intron | 35.0% |
| !! | TTTTGTTTGCTGACACAGAT+GGG | + | chr3.4:86676614-86676633 | MS.gene013357:intron | 35.0% |
| !! | TTTTTGTTTGCTGACACAGA+TGG | + | chr3.4:86676613-86676632 | MS.gene013357:intron | 35.0% |
| !!! | CCATTCTTTGCTTTTGACTT+AGG | - | chr3.4:86677115-86677134 | None:intergenic | 35.0% |
| !!! | TTTTGGTTTTGGTTCAGCTT+CGG | - | chr3.4:86676665-86676684 | None:intergenic | 35.0% |
| AACTACAAAGAGGCCGATAA+TGG | + | chr3.4:86676957-86676976 | MS.gene013357:CDS | 40.0% | |
| AATCGACGAACATTGCTTGA+TGG | - | chr3.4:86676055-86676074 | None:intergenic | 40.0% | |
| ACCTGATGATTATGCCCATT+TGG | - | chr3.4:86676405-86676424 | None:intergenic | 40.0% | |
| ATCAAGCAATGTTCGTCGAT+TGG | + | chr3.4:86676054-86676073 | MS.gene013357:CDS | 40.0% | |
| CCTGATGATTATGCCCATTT+GGG | - | chr3.4:86676404-86676423 | None:intergenic | 40.0% | |
| CTATTCTCACTGTGTGGATT+TGG | - | chr3.4:86676531-86676550 | None:intergenic | 40.0% | |
| CTGATGATTATGCCCATTTG+GGG | - | chr3.4:86676403-86676422 | None:intergenic | 40.0% | |
| GATGAGGAGATAGATCCTTA+CGG | + | chr3.4:86675627-86675646 | MS.gene013357:CDS | 40.0% | |
| GATGGAGTTGCTACAAAATC+TGG | + | chr3.4:86675840-86675859 | MS.gene013357:CDS | 40.0% | |
| GCAAAGAACAATTCAGGTGA+TGG | + | chr3.4:86677075-86677094 | MS.gene013357:CDS | 40.0% | |
| TACTTTGCAAAGCACAAAGG+TGG | + | chr3.4:86677136-86677155 | MS.gene013357:CDS | 40.0% | |
| TCATCAAACAAACCACCGTA+AGG | - | chr3.4:86675645-86675664 | None:intergenic | 40.0% | |
| TCTCTGTCTCTGCAATCATT+CGG | - | chr3.4:86676874-86676893 | None:intergenic | 40.0% | |
| TGAAGCAGAATCCACAAAGA+GGG | + | chr3.4:86676215-86676234 | MS.gene013357:CDS | 40.0% | |
| ! | GGTTACTTTGCAAAGCACAA+AGG | + | chr3.4:86677133-86677152 | MS.gene013357:CDS | 40.0% |
| ! | TCTTTGCGAGGAACTGATTT+AGG | - | chr3.4:86676688-86676707 | None:intergenic | 40.0% |
| ! | TTTGGAGAGTACGCAAAATC+AGG | - | chr3.4:86676513-86676532 | None:intergenic | 40.0% |
| !! | AGAGCAATTTTGATGCAGAG+AGG | + | chr3.4:86676904-86676923 | MS.gene013357:CDS | 40.0% |
| !! | CGAGGAACTGATTTAGGTTT+TGG | - | chr3.4:86676682-86676701 | None:intergenic | 40.0% |
| !! | GCAAACAAAAGGCATCAACA+AGG | - | chr3.4:86676578-86676597 | None:intergenic | 40.0% |
| AAACGAAGACGGTGAAGATG+AGG | + | chr3.4:86675611-86675630 | MS.gene013357:CDS | 45.0% | |
| ATGATTATGCCCATTTGGGG+TGG | - | chr3.4:86676400-86676419 | None:intergenic | 45.0% | |
| CAGATGCTATTCTCACTGTG+TGG | - | chr3.4:86676537-86676556 | None:intergenic | 45.0% | |
| CAGTCTGAAGGAAACGAAGA+CGG | + | chr3.4:86675600-86675619 | MS.gene013357:CDS | 45.0% | |
| CCCAAATGGGCATAATCATC+AGG | + | chr3.4:86676401-86676420 | MS.gene013357:CDS | 45.0% | |
| CCGATCTATATTACACACGG+CGG | + | chr3.4:86675320-86675339 | MS.gene013357:CDS | 45.0% | |
| CCGCCGTGTGTAATATAGAT+CGG | - | chr3.4:86675323-86675342 | None:intergenic | 45.0% | |
| CGATCTATATTACACACGGC+GGG | + | chr3.4:86675321-86675340 | MS.gene013357:CDS | 45.0% | |
| GAGCTAAAGAGGAGAAGAGA+CGG | + | chr3.4:86675405-86675424 | MS.gene013357:CDS | 45.0% | |
| GCTTCAAGCGAACTACAAAG+AGG | + | chr3.4:86676947-86676966 | MS.gene013357:CDS | 45.0% | |
| GGAGTTGCTACAAAATCTGG+TGG | + | chr3.4:86675843-86675862 | MS.gene013357:CDS | 45.0% | |
| GTGAAGCAGAATCCACAAAG+AGG | + | chr3.4:86676214-86676233 | MS.gene013357:CDS | 45.0% | |
| TCTTCGTTTCCTTCAGACTG+CGG | - | chr3.4:86675600-86675619 | None:intergenic | 45.0% | |
| TGCAGAAAACCACCCCAAAT+GGG | + | chr3.4:86676388-86676407 | MS.gene013357:CDS | 45.0% | |
| TGTAGGAAACTGACATAGGG+AGG | + | chr3.4:86676005-86676024 | MS.gene013357:intron | 45.0% | |
| TTGCAGAAAACCACCCCAAA+TGG | + | chr3.4:86676387-86676406 | MS.gene013357:CDS | 45.0% | |
| TTTGCAAAGCACAAAGGTGG+TGG | + | chr3.4:86677139-86677158 | MS.gene013357:CDS | 45.0% | |
| ! | GCTTCTAGAAGATCCTCAAC+AGG | + | chr3.4:86675695-86675714 | MS.gene013357:CDS | 45.0% |
| ! | TCTTCTCCTCTTTAGCTCAC+CGG | - | chr3.4:86675403-86675422 | None:intergenic | 45.0% |
| !! | AAGAGGGAAAAGCACTCTCA+TGG | + | chr3.4:86676231-86676250 | MS.gene013357:CDS | 45.0% |
| !! | AGAGGGAAAAGCACTCTCAT+GGG | + | chr3.4:86676232-86676251 | MS.gene013357:CDS | 45.0% |
| !! | AGAGTGCTTTTCCCTCTTTG+TGG | - | chr3.4:86676229-86676248 | None:intergenic | 45.0% |
| !! | TTTGGGGTGGTTTTCTGCAA+AGG | - | chr3.4:86676387-86676406 | None:intergenic | 45.0% |
| AAGACCCACCTCCAAAACCA+AGG | + | chr3.4:86676704-86676723 | MS.gene013357:CDS | 50.0% | |
| ATAACGCCGGTGAGCTAAAG+AGG | + | chr3.4:86675394-86675413 | MS.gene013357:CDS | 50.0% | |
| ATTTGCCAGAATTGCGACGG+AGG | + | chr3.4:86675471-86675490 | MS.gene013357:CDS | 50.0% | |
| CCGTCGCAATTCTGGCAAAT+CGG | - | chr3.4:86675471-86675490 | None:intergenic | 50.0% | |
| CCTCTGCTCCTCAGAATGTA+CGG | + | chr3.4:86676752-86676771 | MS.gene013357:intron | 50.0% | |
| GAACAGTCCTAGTCTGAGTC+CGG | + | chr3.4:86675533-86675552 | MS.gene013357:CDS | 50.0% | |
| GAGGAGATAGATCCTTACGG+TGG | + | chr3.4:86675630-86675649 | MS.gene013357:CDS | 50.0% | |
| ! | AAAGGTGGTGGCAGTTCTCA+AGG | + | chr3.4:86677151-86677170 | MS.gene013357:CDS | 50.0% |
| ! | ACATTCTGAGGAGCAGAGGT+AGG | - | chr3.4:86676751-86676770 | None:intergenic | 50.0% |
| ! | ATTCTGAGGAGCAGAGGTAG+GGG | - | chr3.4:86676749-86676768 | None:intergenic | 50.0% |
| ! | CATTCTGAGGAGCAGAGGTA+GGG | - | chr3.4:86676750-86676769 | None:intergenic | 50.0% |
| ! | CCGATTTGCCAGAATTGCGA+CGG | + | chr3.4:86675468-86675487 | MS.gene013357:CDS | 50.0% |
| !! | GGCTTGCTGCTGCAAGAAAA+CGG | + | chr3.4:86676925-86676944 | MS.gene013357:CDS | 50.0% |
| !! | GTTCAGCTTCGGAGGTGTTA+CGG | - | chr3.4:86676654-86676673 | None:intergenic | 50.0% |
| !!! | ATGGCCTTGGTTTTGGAGGT+GGG | - | chr3.4:86676711-86676730 | None:intergenic | 50.0% |
| !!! | TGGTTTTGGTTCAGCTTCGG+AGG | - | chr3.4:86676662-86676681 | None:intergenic | 50.0% |
| AATCGGAGTAACCTCCGTGG+TGG | - | chr3.4:86675454-86675473 | None:intergenic | 55.0% | |
| AGAGGTAGGGGCAGTAACTG+GGG | - | chr3.4:86676737-86676756 | None:intergenic | 55.0% | |
| CAGAGGTAGGGGCAGTAACT+GGG | - | chr3.4:86676738-86676757 | None:intergenic | 55.0% | |
| GAGGAGAAGAGACGGAATCG+TGG | + | chr3.4:86675413-86675432 | MS.gene013357:CDS | 55.0% | |
| GCAAATCGGAGTAACCTCCG+TGG | - | chr3.4:86675457-86675476 | None:intergenic | 55.0% | |
| GTGGTGGCAGTTCTCAAGGA+AGG | + | chr3.4:86677155-86677174 | MS.gene013357:CDS | 55.0% | |
| GTTCTCAAGGAAGGCAGCAC+TGG | + | chr3.4:86677164-86677183 | MS.gene013357:CDS | 55.0% | |
| GTTGACCTCCGTCGCAATTC+TGG | - | chr3.4:86675479-86675498 | None:intergenic | 55.0% | |
| TGTCGTTCCGGACTCAGACT+AGG | - | chr3.4:86675543-86675562 | None:intergenic | 55.0% | |
| TTTCCTTCAGACTGCGGCGT+CGG | - | chr3.4:86675594-86675613 | None:intergenic | 55.0% | |
| TTTGGAGGTGGGTCTTTGCG+AGG | - | chr3.4:86676700-86676719 | None:intergenic | 55.0% | |
| ! | CCGTACATTCTGAGGAGCAG+AGG | - | chr3.4:86676755-86676774 | None:intergenic | 55.0% |
| !! | AGCTTCGGAGGTGTTACGGT+CGG | - | chr3.4:86676650-86676669 | None:intergenic | 55.0% |
| !!! | GATGGCCTTGGTTTTGGAGG+TGG | - | chr3.4:86676712-86676731 | None:intergenic | 55.0% |
| AGGTAGGGGCAGTAACTGGG+GGG | - | chr3.4:86676735-86676754 | None:intergenic | 60.0% | |
| GAGGTAGGGGCAGTAACTGG+GGG | - | chr3.4:86676736-86676755 | None:intergenic | 60.0% | |
| GCAGAGGTAGGGGCAGTAAC+TGG | - | chr3.4:86676739-86676758 | None:intergenic | 60.0% | |
| GCTGACACAGATGGGAGCTC+TGG | + | chr3.4:86676622-86676641 | MS.gene013357:intron | 60.0% | |
| !!! | GGGGATGGCCTTGGTTTTGG+AGG | - | chr3.4:86676715-86676734 | None:intergenic | 60.0% |
| GAGGAGAAGAAGCTCCGCCG+CGG | - | chr3.4:86675572-86675591 | None:intergenic | 65.0% | |
| GCGTCTCTACGCTGCCACCA+CGG | + | chr3.4:86675437-86675456 | MS.gene013357:CDS | 65.0% | |
| GGCGTTATCCTGCGCAGCGA+CGG | - | chr3.4:86675382-86675401 | None:intergenic | 65.0% | |
| GGTAGGGGCAGTAACTGGGG+GGG | - | chr3.4:86676734-86676753 | None:intergenic | 65.0% | |
| GTAACTGGGGGGGATGGCCT+TGG | - | chr3.4:86676724-86676743 | None:intergenic | 65.0% | |
| GTCGCTGCGCAGGATAACGC+CGG | + | chr3.4:86675381-86675400 | MS.gene013357:CDS | 65.0% | |
| TCTCTACGCTGCCACCACGG+AGG | + | chr3.4:86675440-86675459 | MS.gene013357:CDS | 65.0% | |
| !! | GGGGGGGATGGCCTTGGTTT+TGG | - | chr3.4:86676718-86676737 | None:intergenic | 65.0% |
| CCTCCGACGCCGCAGTCTGA+AGG | + | chr3.4:86675588-86675607 | MS.gene013357:CDS | 70.0% | |
| CTGCGCAGCGACGGAGATCG+CGG | - | chr3.4:86675373-86675392 | None:intergenic | 70.0% | |
| GGGGCAGTAACTGGGGGGGA+TGG | - | chr3.4:86676730-86676749 | None:intergenic | 70.0% | |
| ! | CCTTCAGACTGCGGCGTCGG+AGG | - | chr3.4:86675591-86675610 | None:intergenic | 70.0% |
| !! | ACACGGCGGGCGTTGACGTC+TGG | + | chr3.4:86675334-86675353 | MS.gene013357:CDS | 70.0% |
| CCGCGGCGCGGTTGTCGTTC+CGG | - | chr3.4:86675555-86675574 | None:intergenic | 75.0% | |
| CCGGAACGACAACCGCGCCG+CGG | + | chr3.4:86675552-86675571 | MS.gene013357:CDS | 75.0% | |
| CGCGATCTCCGTCGCTGCGC+AGG | + | chr3.4:86675371-86675390 | MS.gene013357:CDS | 75.0% | |
| GAACGACAACCGCGCCGCGG+CGG | + | chr3.4:86675555-86675574 | MS.gene013357:CDS | 75.0% | |
| GAAGAAGCTCCGCCGCGGCG+CGG | - | chr3.4:86675567-86675586 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 86675303 | 86677189 | 86675303 | ID=MS.gene013357 |
| chr3.4 | mRNA | 86675303 | 86677189 | 86675303 | ID=MS.gene013357.t1;Parent=MS.gene013357 |
| chr3.4 | exon | 86675303 | 86675716 | 86675303 | ID=MS.gene013357.t1.exon1;Parent=MS.gene013357.t1 |
| chr3.4 | CDS | 86675303 | 86675716 | 86675303 | ID=cds.MS.gene013357.t1;Parent=MS.gene013357.t1 |
| chr3.4 | exon | 86675826 | 86675894 | 86675826 | ID=MS.gene013357.t1.exon2;Parent=MS.gene013357.t1 |
| chr3.4 | CDS | 86675826 | 86675894 | 86675826 | ID=cds.MS.gene013357.t1;Parent=MS.gene013357.t1 |
| chr3.4 | exon | 86676010 | 86676092 | 86676010 | ID=MS.gene013357.t1.exon3;Parent=MS.gene013357.t1 |
| chr3.4 | CDS | 86676010 | 86676092 | 86676010 | ID=cds.MS.gene013357.t1;Parent=MS.gene013357.t1 |
| chr3.4 | exon | 86676186 | 86676253 | 86676186 | ID=MS.gene013357.t1.exon4;Parent=MS.gene013357.t1 |
| chr3.4 | CDS | 86676186 | 86676253 | 86676186 | ID=cds.MS.gene013357.t1;Parent=MS.gene013357.t1 |
| chr3.4 | exon | 86676370 | 86676422 | 86676370 | ID=MS.gene013357.t1.exon5;Parent=MS.gene013357.t1 |
| chr3.4 | CDS | 86676370 | 86676422 | 86676370 | ID=cds.MS.gene013357.t1;Parent=MS.gene013357.t1 |
| chr3.4 | exon | 86676507 | 86676540 | 86676507 | ID=MS.gene013357.t1.exon6;Parent=MS.gene013357.t1 |
| chr3.4 | CDS | 86676507 | 86676540 | 86676507 | ID=cds.MS.gene013357.t1;Parent=MS.gene013357.t1 |
| chr3.4 | exon | 86676632 | 86676768 | 86676632 | ID=MS.gene013357.t1.exon7;Parent=MS.gene013357.t1 |
| chr3.4 | CDS | 86676632 | 86676768 | 86676632 | ID=cds.MS.gene013357.t1;Parent=MS.gene013357.t1 |
| chr3.4 | exon | 86676885 | 86676978 | 86676885 | ID=MS.gene013357.t1.exon8;Parent=MS.gene013357.t1 |
| chr3.4 | CDS | 86676885 | 86676978 | 86676885 | ID=cds.MS.gene013357.t1;Parent=MS.gene013357.t1 |
| chr3.4 | exon | 86677068 | 86677189 | 86677068 | ID=MS.gene013357.t1.exon9;Parent=MS.gene013357.t1 |
| chr3.4 | CDS | 86677068 | 86677189 | 86677068 | ID=cds.MS.gene013357.t1;Parent=MS.gene013357.t1 |
| Gene Sequence |
| Protein sequence |
