AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene013373

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013373.t1 MTR_3g095080 97.541 244 5 1 1 243 1 244 0.0 501
MS.gene013373.t1 MTR_3g095080 87.705 244 5 2 1 243 1 220 5.63e-159 439
MS.gene013373.t1 MTR_3g095080 95.789 190 7 1 1 189 1 190 8.34e-137 382
MS.gene013373.t1 MTR_8g092140 62.857 245 70 13 6 243 4 234 5.31e-88 260
MS.gene013373.t1 MTR_8g007270 79.121 91 19 0 143 233 130 220 6.09e-48 158
MS.gene013373.t1 MTR_5g043880 66.667 81 27 0 143 223 100 180 1.35e-33 122
MS.gene013373.t1 MTR_7g079010 33.953 215 117 4 32 234 6 207 1.44e-32 118
MS.gene013373.t1 MTR_1g086790 60.638 94 35 2 139 232 131 222 7.04e-32 119
MS.gene013373.t1 MTR_3g031220 64.103 78 28 0 146 223 344 421 1.39e-30 118
MS.gene013373.t1 MTR_3g031220 47.887 71 32 2 157 223 184 253 1.06e-14 73.2
MS.gene013373.t1 MTR_3g104750 57.500 80 34 0 147 226 84 163 1.98e-30 111
MS.gene013373.t1 MTR_4g094588 70.423 71 21 0 153 223 164 234 3.19e-30 115
MS.gene013373.t1 MTR_2g033820 68.493 73 23 0 151 223 187 259 3.53e-30 115
MS.gene013373.t1 MTR_5g074400 41.420 169 79 4 69 223 314 476 4.94e-30 117
MS.gene013373.t1 MTR_5g074400 56.140 57 24 1 167 223 243 298 1.73e-14 72.8
MS.gene013373.t1 MTR_5g094430 60.526 76 30 0 148 223 211 286 5.84e-30 115
MS.gene013373.t1 MTR_5g094430 43.182 88 46 2 152 236 51 137 8.50e-14 70.5
MS.gene013373.t1 MTR_5g094430 60.526 76 30 0 148 223 233 308 7.29e-30 115
MS.gene013373.t1 MTR_5g094430 43.182 88 46 2 152 236 73 159 8.02e-14 70.5
MS.gene013373.t1 MTR_5g094430 60.526 76 30 0 148 223 345 420 1.01e-29 116
MS.gene013373.t1 MTR_5g094430 43.182 88 46 2 152 236 185 271 9.87e-14 70.5
MS.gene013373.t1 MTR_3g056100 60.526 76 30 0 148 223 239 314 3.39e-29 114
MS.gene013373.t1 MTR_3g056100 56.140 57 24 1 167 223 99 154 2.42e-14 72.0
MS.gene013373.t1 MTR_7g109800 53.846 104 42 3 124 223 100 201 4.02e-29 111
MS.gene013373.t1 MTR_3g056100 60.526 76 30 0 148 223 383 458 4.28e-29 115
MS.gene013373.t1 MTR_3g056100 56.140 57 24 1 167 223 243 298 1.45e-14 72.8
MS.gene013373.t1 MTR_3g009470 49.558 113 44 1 124 223 439 551 4.47e-29 115
MS.gene013373.t1 MTR_3g009470 56.140 57 24 1 167 223 280 335 1.06e-14 73.6
MS.gene013373.t1 MTR_3g056100 60.526 76 30 0 148 223 396 471 4.61e-29 115
MS.gene013373.t1 MTR_3g056100 56.140 57 24 1 167 223 243 298 1.53e-14 72.8
MS.gene013373.t1 MTR_7g011820 61.039 77 30 0 147 223 390 466 4.85e-29 114
MS.gene013373.t1 MTR_7g011820 59.649 57 22 1 167 223 228 283 5.18e-16 77.0
MS.gene013373.t1 MTR_3g056100 60.526 76 30 0 148 223 252 327 4.93e-29 114
MS.gene013373.t1 MTR_3g056100 56.140 57 24 1 167 223 99 154 2.64e-14 72.0
MS.gene013373.t1 MTR_5g042920 61.842 76 29 0 148 223 301 376 5.01e-29 113
MS.gene013373.t1 MTR_5g042920 49.367 79 34 3 167 241 151 227 5.01e-15 73.9
MS.gene013373.t1 MTR_4g013260 44.928 138 59 3 97 223 261 392 1.09e-28 113
MS.gene013373.t1 MTR_4g013260 52.632 57 27 0 167 223 184 240 5.17e-15 74.3
MS.gene013373.t1 MTR_5g091390 66.197 71 24 0 153 223 143 213 1.56e-28 110
MS.gene013373.t1 MTR_4g122530 67.123 73 24 0 151 223 192 264 2.14e-28 111
MS.gene013373.t1 MTR_4g082580 59.211 76 31 0 148 223 259 334 4.89e-28 110
MS.gene013373.t1 MTR_4g082580 54.386 57 26 0 167 223 145 201 1.70e-14 72.4
MS.gene013373.t1 MTR_7g028415 63.768 69 25 0 155 223 81 149 7.81e-28 104
MS.gene013373.t1 MTR_7g028710 63.768 69 25 0 155 223 81 149 7.81e-28 104
MS.gene013373.t1 MTR_7g080000 56.627 83 36 0 141 223 406 488 2.38e-27 110
MS.gene013373.t1 MTR_7g080000 52.381 63 29 1 165 227 232 293 1.87e-15 75.5
MS.gene013373.t1 MTR_7g080020 55.422 83 37 0 141 223 467 549 5.26e-27 109
MS.gene013373.t1 MTR_7g080020 55.172 58 25 1 167 224 280 336 1.31e-15 76.3
MS.gene013373.t1 MTR_7g071120 59.211 76 31 0 148 223 305 380 1.35e-26 107
MS.gene013373.t1 MTR_7g071120 50.000 76 35 2 167 240 166 240 8.63e-15 73.6
MS.gene013373.t1 MTR_1g015140 58.442 77 31 1 147 223 83 158 1.67e-26 101
MS.gene013373.t1 MTR_8g096730 45.918 98 51 2 145 242 48 143 7.65e-26 99.0
MS.gene013373.t1 MTR_1g077780 48.936 94 48 0 148 241 43 136 2.39e-25 97.4
MS.gene013373.t1 MTR_3g095040 57.895 76 31 1 153 227 104 179 5.07e-25 98.6
MS.gene013373.t1 MTR_7g100510 56.944 72 31 0 152 223 346 417 1.19e-23 99.0
MS.gene013373.t1 MTR_7g100510 57.143 56 23 1 168 223 190 244 1.89e-14 72.4
MS.gene013373.t1 MTR_8g092010 42.424 99 51 1 131 223 66 164 3.30e-22 90.5
MS.gene013373.t1 MTR_1g078260 47.727 88 45 1 154 240 234 321 1.11e-21 93.6
MS.gene013373.t1 MTR_7g062220 45.361 97 52 1 128 223 84 180 2.90e-21 90.9
MS.gene013373.t1 MTR_5g097490 51.351 74 36 0 152 225 237 310 6.92e-21 90.5
MS.gene013373.t1 MTR_1g009613 36.735 147 74 4 86 231 199 327 1.82e-20 89.0
MS.gene013373.t1 MTR_2g088000 46.067 89 46 2 150 236 332 420 2.05e-19 87.0
MS.gene013373.t1 MTR_4g130900 49.315 73 37 0 151 223 343 415 2.44e-19 86.7
MS.gene013373.t1 MTR_6g086555 48.611 72 36 1 153 223 192 263 4.33e-19 85.9
MS.gene013373.t1 MTR_4g107970 47.368 76 39 1 150 224 161 236 4.57e-19 86.3
MS.gene013373.t1 MTR_4g107970 47.368 76 39 1 150 224 238 313 5.15e-19 85.9
MS.gene013373.t1 MTR_4g132430 48.000 75 38 1 150 223 110 184 1.08e-18 84.3
MS.gene013373.t1 MTR_4g132430 48.000 75 38 1 150 223 244 318 2.79e-18 83.6
MS.gene013373.t1 MTR_4g094908 45.455 88 44 2 140 226 242 326 3.53e-18 82.4
MS.gene013373.t1 MTR_3g108960 46.988 83 40 3 142 223 292 371 3.53e-18 83.2
MS.gene013373.t1 MTR_5g016610 45.455 88 44 2 140 226 175 259 4.10e-18 81.3
MS.gene013373.t1 MTR_3g053330 44.737 76 41 1 150 224 234 309 4.52e-18 83.2
MS.gene013373.t1 MTR_2g023930 46.667 75 39 1 150 223 288 362 4.56e-18 83.2
MS.gene013373.t1 MTR_7g110720 47.297 74 38 1 151 223 200 273 7.98e-18 82.0
MS.gene013373.t1 MTR_7g110720 47.297 74 38 1 151 223 173 246 8.42e-18 82.0
MS.gene013373.t1 MTR_2g105060 46.154 78 39 2 149 223 74 151 1.03e-17 79.7
MS.gene013373.t1 MTR_2g105060 46.154 78 39 2 149 223 149 226 1.32e-17 80.5
MS.gene013373.t1 MTR_4g127040 37.500 112 55 4 114 224 206 303 1.70e-16 77.4
MS.gene013373.t1 MTR_7g009730 47.887 71 36 1 154 223 206 276 2.02e-16 78.6
MS.gene013373.t1 MTR_4g049790 45.882 85 44 2 154 236 299 383 2.57e-16 78.2
MS.gene013373.t1 MTR_2g045360 34.014 147 87 4 99 242 150 289 5.05e-16 77.0
MS.gene013373.t1 MTR_1g013760 52.632 57 26 1 168 223 141 197 5.23e-16 75.9
MS.gene013373.t1 MTR_0117s0040 51.613 62 29 1 163 223 70 131 1.04e-15 74.3
MS.gene013373.t1 MTR_4g094412 44.595 74 40 1 151 223 218 291 1.28e-15 75.9
MS.gene013373.t1 MTR_4g094412 44.595 74 40 1 151 223 227 300 1.29e-15 75.9
MS.gene013373.t1 MTR_3g106060 50.000 60 29 1 166 224 137 196 1.30e-15 74.7
MS.gene013373.t1 MTR_1g070455 40.476 84 46 2 142 224 271 351 1.60e-15 75.1
MS.gene013373.t1 MTR_1g013790 44.615 65 35 1 165 228 99 163 2.33e-15 73.6
MS.gene013373.t1 MTR_8g028565 37.500 120 63 6 124 239 120 231 5.77e-15 73.6
MS.gene013373.t1 MTR_3g031220 47.887 71 32 2 157 223 184 253 6.60e-15 73.6
MS.gene013373.t1 MTR_3g031220 66.667 42 14 0 146 187 344 385 2.33e-13 68.9
MS.gene013373.t1 MTR_4g007060 43.478 69 38 1 165 232 126 194 9.38e-15 72.4
MS.gene013373.t1 MTR_8g099350 53.125 64 27 1 167 227 132 195 1.16e-14 72.8
MS.gene013373.t1 MTR_4g007060 43.478 69 38 1 165 232 160 228 1.26e-14 72.4
MS.gene013373.t1 MTR_3g009470 56.140 57 24 1 167 223 280 335 1.32e-14 73.2
MS.gene013373.t1 MTR_3g009470 45.455 77 29 1 124 187 439 515 4.84e-13 68.6
MS.gene013373.t1 MTR_3g090860 53.333 60 25 1 166 222 132 191 1.45e-14 72.4
MS.gene013373.t1 MTR_5g067680 53.448 58 24 1 167 221 202 259 2.93e-14 71.6
MS.gene013373.t1 MTR_5g097500 43.243 74 42 0 152 225 215 288 5.08e-14 70.5
MS.gene013373.t1 MTR_7g117200 40.196 102 50 3 125 222 82 176 1.29e-13 69.3
MS.gene013373.t1 MTR_2g075750 45.902 61 30 1 165 222 26 86 1.43e-13 67.4
MS.gene013373.t1 MTR_4g049760 39.130 92 54 2 154 243 277 368 1.98e-13 69.7
MS.gene013373.t1 MTR_5g074200 43.836 73 39 2 167 238 220 291 2.35e-13 68.9
MS.gene013373.t1 MTR_7g073430 50.847 59 26 1 167 222 122 180 2.76e-13 68.2
MS.gene013373.t1 MTR_2g075610 46.667 60 29 1 165 221 27 86 4.78e-13 65.9
MS.gene013373.t1 MTR_2g075700 50.820 61 27 1 165 222 142 202 5.23e-13 67.8
MS.gene013373.t1 MTR_2g075680 39.362 94 51 3 132 222 116 206 6.74e-13 67.4
MS.gene013373.t1 MTR_8g087000 48.276 58 29 1 168 224 78 135 1.01e-12 66.2
MS.gene013373.t1 MTR_8g087000 48.276 58 29 1 168 224 77 134 1.10e-12 65.9
MS.gene013373.t1 MTR_5g029850 67.500 40 13 0 144 183 28 67 1.29e-12 62.0
MS.gene013373.t1 MTR_2g032030 32.673 101 60 2 131 223 224 324 1.79e-12 66.6
MS.gene013373.t1 MTR_2g024350 42.424 66 37 1 160 224 1 66 2.15e-12 65.1
MS.gene013373.t1 MTR_2g032030 32.673 101 60 2 131 223 224 324 2.33e-12 66.2
MS.gene013373.t1 MTR_2g016770 38.372 86 47 3 144 224 1 85 2.41e-12 64.3
MS.gene013373.t1 MTR_8g098945 46.667 60 31 1 165 223 127 186 2.44e-12 65.5
MS.gene013373.t1 MTR_2g016770 46.552 58 30 1 168 224 36 93 2.47e-12 64.7
MS.gene013373.t1 MTR_8g005750 38.372 86 49 2 145 227 82 166 5.16e-12 64.3
MS.gene013373.t1 MTR_2g024380 41.429 70 38 2 156 224 242 309 6.19e-12 65.1
MS.gene013373.t1 MTR_7g073380 40.000 85 47 2 141 222 98 181 6.54e-12 64.3
MS.gene013373.t1 MTR_7g079040 46.053 76 37 3 168 239 155 230 6.70e-12 64.7
MS.gene013373.t1 MTR_7g109600 49.123 57 28 1 168 223 54 110 9.04e-12 63.5
MS.gene013373.t1 MTR_8g027860 41.096 73 40 1 166 235 135 207 9.78e-12 64.3
MS.gene013373.t1 MTR_0002s1250 44.068 59 30 1 167 222 111 169 2.03e-11 62.8
MS.gene013373.t1 MTR_2g083870 46.552 58 30 1 168 224 81 138 5.21e-11 61.6
MS.gene013373.t1 MTR_8g067635 36.047 86 53 2 140 223 321 406 5.38e-11 62.4
MS.gene013373.t1 MTR_1g099600 36.709 79 48 2 147 224 166 243 5.49e-11 61.6
MS.gene013373.t1 MTR_8g067650 37.363 91 54 3 140 227 311 401 7.64e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013373.t1 AT4G39410 70.896 134 23 3 126 243 171 304 5.76e-62 196
MS.gene013373.t1 AT2G44745 82.558 86 15 0 143 228 121 206 5.72e-48 158
MS.gene013373.t1 AT1G69310 63.218 87 31 1 137 223 118 203 1.24e-34 125
MS.gene013373.t1 AT1G69310 63.218 87 31 1 137 223 118 203 1.24e-34 125
MS.gene013373.t1 AT1G69310 63.218 87 31 1 137 223 118 203 1.24e-34 125
MS.gene013373.t1 AT5G41570 57.843 102 39 2 131 232 65 162 8.31e-33 117
MS.gene013373.t1 AT1G64000 62.222 90 33 1 143 232 90 178 1.20e-32 118
MS.gene013373.t1 AT2G46130 59.770 87 34 1 148 234 11 96 4.98e-32 113
MS.gene013373.t1 AT5G49520 68.493 73 23 0 151 223 205 277 1.04e-30 117
MS.gene013373.t1 AT5G07100 51.923 104 44 1 120 223 100 197 1.29e-30 113
MS.gene013373.t1 AT5G07100 47.826 69 36 0 155 223 12 80 9.46e-15 71.2
MS.gene013373.t1 AT5G07100 51.923 104 44 1 120 223 100 197 1.29e-30 113
MS.gene013373.t1 AT5G07100 47.826 69 36 0 155 223 12 80 9.46e-15 71.2
MS.gene013373.t1 AT5G07100 51.923 104 44 1 120 223 100 197 1.29e-30 113
MS.gene013373.t1 AT5G07100 47.826 69 36 0 155 223 12 80 9.46e-15 71.2
MS.gene013373.t1 AT5G07100 51.923 104 44 1 120 223 100 197 1.29e-30 113
MS.gene013373.t1 AT5G07100 47.826 69 36 0 155 223 12 80 9.46e-15 71.2
MS.gene013373.t1 AT4G18170 59.375 96 37 2 133 227 139 233 1.49e-30 115
MS.gene013373.t1 AT5G07100 51.923 104 44 1 120 223 193 290 2.15e-30 115
MS.gene013373.t1 AT5G07100 47.826 69 36 0 155 223 105 173 1.03e-14 72.4
MS.gene013373.t1 AT5G26170 66.216 74 25 0 154 227 100 173 2.83e-30 111
MS.gene013373.t1 AT4G26640 53.846 91 35 1 140 223 171 261 2.41e-29 113
MS.gene013373.t1 AT4G26640 54.237 59 26 1 165 223 33 90 7.93e-14 70.5
MS.gene013373.t1 AT4G26640 53.846 91 35 1 140 223 171 261 2.41e-29 113
MS.gene013373.t1 AT4G26640 54.237 59 26 1 165 223 33 90 7.93e-14 70.5
MS.gene013373.t1 AT4G26640 53.846 91 35 1 140 223 171 261 2.41e-29 113
MS.gene013373.t1 AT4G26640 54.237 59 26 1 165 223 33 90 7.93e-14 70.5
MS.gene013373.t1 AT4G26640 53.846 91 35 1 140 223 171 261 2.41e-29 113
MS.gene013373.t1 AT4G26640 54.237 59 26 1 165 223 33 90 7.93e-14 70.5
MS.gene013373.t1 AT1G13960 63.158 76 28 0 148 223 237 312 2.66e-29 113
MS.gene013373.t1 AT1G13960 55.932 59 25 1 167 225 76 133 9.21e-15 73.2
MS.gene013373.t1 AT1G13960 63.158 76 28 0 148 223 390 465 2.96e-29 115
MS.gene013373.t1 AT1G13960 55.932 59 25 1 167 225 229 286 2.97e-15 75.1
MS.gene013373.t1 AT2G03340 63.158 76 28 0 148 223 396 471 3.21e-29 115
MS.gene013373.t1 AT2G03340 56.140 57 24 1 167 223 250 305 6.72e-14 70.9
MS.gene013373.t1 AT4G26640 53.846 91 35 1 140 223 307 397 3.40e-29 115
MS.gene013373.t1 AT4G26640 54.237 59 26 1 165 223 169 226 4.76e-14 71.6
MS.gene013373.t1 AT4G26640 53.846 91 35 1 140 223 275 365 4.06e-29 114
MS.gene013373.t1 AT4G26640 54.237 59 26 1 165 223 137 194 5.88e-14 71.2
MS.gene013373.t1 AT4G26640 53.846 91 35 1 140 223 347 437 5.01e-29 114
MS.gene013373.t1 AT4G26640 54.237 59 26 1 165 223 209 266 5.25e-14 71.2
MS.gene013373.t1 AT1G29860 65.753 73 25 0 151 223 120 192 5.11e-29 110
MS.gene013373.t1 AT1G69310 58.621 87 31 2 137 223 118 199 5.61e-29 110
MS.gene013373.t1 AT2G47260 61.176 85 32 1 139 223 147 230 6.28e-29 111
MS.gene013373.t1 AT3G01080 55.435 92 37 1 136 223 309 400 8.07e-29 113
MS.gene013373.t1 AT3G01080 56.140 57 24 1 167 223 205 260 3.17e-15 74.7
MS.gene013373.t1 AT5G56270 63.158 76 28 0 148 223 468 543 9.82e-29 114
MS.gene013373.t1 AT5G56270 50.769 65 31 1 159 223 265 328 1.93e-15 75.9
MS.gene013373.t1 AT5G13080 64.286 70 25 0 154 223 54 123 1.10e-28 106
MS.gene013373.t1 AT3G01080 55.435 92 37 1 136 223 271 362 1.32e-28 112
MS.gene013373.t1 AT3G01080 56.140 57 24 1 167 223 167 222 6.08e-15 73.9
MS.gene013373.t1 AT2G38470 63.158 76 28 0 148 223 343 418 1.65e-28 113
MS.gene013373.t1 AT2G38470 54.386 57 25 1 167 223 184 239 1.59e-13 70.1
MS.gene013373.t1 AT2G30250 58.824 85 35 0 148 232 309 393 4.87e-28 110
MS.gene013373.t1 AT2G30250 47.222 72 36 2 167 238 166 235 2.04e-12 66.2
MS.gene013373.t1 AT5G46350 64.789 71 25 0 153 223 169 239 3.10e-27 107
MS.gene013373.t1 AT4G26440 59.211 76 31 0 148 223 353 428 6.35e-27 108
MS.gene013373.t1 AT4G26440 30.698 215 97 7 21 224 61 234 1.89e-16 78.6
MS.gene013373.t1 AT3G01970 53.409 88 38 1 154 238 52 139 7.89e-27 101
MS.gene013373.t1 AT2G46130 55.172 87 34 2 148 234 11 92 1.55e-26 99.4
MS.gene013373.t1 AT3G62340 59.036 83 32 1 141 223 94 174 6.75e-25 99.8
MS.gene013373.t1 AT5G64810 58.571 70 29 0 154 223 97 166 7.24e-25 97.8
MS.gene013373.t1 AT2G37260 62.903 62 23 0 162 223 262 323 4.87e-23 96.3
MS.gene013373.t1 AT2G37260 49.333 75 36 2 168 241 84 157 1.04e-13 70.1
MS.gene013373.t1 AT2G37260 62.903 62 23 0 162 223 264 325 5.09e-23 96.3
MS.gene013373.t1 AT2G37260 49.333 75 36 2 168 241 86 159 1.06e-13 70.1
MS.gene013373.t1 AT2G37260 65.000 60 21 0 164 223 346 405 9.15e-23 96.3
MS.gene013373.t1 AT2G37260 49.333 75 36 2 168 241 166 239 9.17e-14 70.5
MS.gene013373.t1 AT2G04880 42.202 109 50 2 123 223 236 339 1.04e-21 93.6
MS.gene013373.t1 AT2G04880 55.932 59 25 1 165 223 109 166 2.61e-14 72.0
MS.gene013373.t1 AT5G15130 40.800 125 51 4 105 224 137 243 1.35e-21 93.6
MS.gene013373.t1 AT2G04880 42.202 109 50 2 123 223 260 363 1.39e-21 93.2
MS.gene013373.t1 AT2G04880 55.932 59 25 1 165 223 109 166 2.91e-14 72.0
MS.gene013373.t1 AT5G15130 40.800 125 51 4 105 224 179 285 1.57e-21 93.2
MS.gene013373.t1 AT1G55600 50.000 80 40 0 144 223 284 363 4.15e-21 92.0
MS.gene013373.t1 AT2G21900 46.667 90 42 3 143 226 80 169 2.45e-20 85.9
MS.gene013373.t1 AT2G23320 51.136 88 39 3 140 226 216 300 4.53e-19 84.7
MS.gene013373.t1 AT4G31550 40.952 105 57 3 140 243 222 322 1.25e-18 83.6
MS.gene013373.t1 AT4G31550 40.952 105 57 3 140 243 221 321 1.34e-18 83.6
MS.gene013373.t1 AT4G30935 50.000 70 35 0 154 223 318 387 1.74e-18 84.3
MS.gene013373.t1 AT4G04450 49.333 75 37 1 150 223 181 255 2.51e-18 83.6
MS.gene013373.t1 AT4G04450 49.333 75 37 1 150 223 275 349 6.42e-18 82.8
MS.gene013373.t1 AT5G43290 50.704 71 34 1 154 223 100 170 1.11e-17 80.5
MS.gene013373.t1 AT1G62300 48.000 75 38 1 150 223 295 369 1.38e-17 82.0
MS.gene013373.t1 AT4G22070 48.000 75 38 1 150 223 280 354 1.81e-17 81.6
MS.gene013373.t1 AT4G22070 48.000 75 38 1 150 223 280 354 1.81e-17 81.6
MS.gene013373.t1 AT4G22070 48.000 75 38 1 150 223 280 354 1.81e-17 81.6
MS.gene013373.t1 AT4G22070 48.000 75 38 1 150 223 280 354 1.81e-17 81.6
MS.gene013373.t1 AT2G25000 51.667 60 28 1 166 224 102 161 2.26e-17 78.6
MS.gene013373.t1 AT2G25000 51.667 60 28 1 166 224 102 161 2.26e-17 78.6
MS.gene013373.t1 AT2G25000 50.820 61 29 1 165 224 123 183 3.43e-17 78.6
MS.gene013373.t1 AT4G01720 48.649 74 37 1 151 223 223 296 4.43e-17 80.1
MS.gene013373.t1 AT4G31800 51.667 60 28 1 165 223 109 168 4.48e-17 78.2
MS.gene013373.t1 AT2G25000 51.667 60 28 1 166 224 145 204 5.00e-17 78.6
MS.gene013373.t1 AT5G28650 43.023 86 45 2 140 224 238 320 6.00e-17 79.0
MS.gene013373.t1 AT2G30590 44.706 85 43 2 140 223 289 370 6.85e-17 79.3
MS.gene013373.t1 AT4G31800 51.667 60 28 1 165 223 174 233 7.55e-17 78.6
MS.gene013373.t1 AT2G24570 38.938 113 56 3 112 223 200 300 1.67e-16 77.8
MS.gene013373.t1 AT1G18860 44.000 75 41 1 150 223 222 296 2.25e-16 78.2
MS.gene013373.t1 AT3G04670 41.860 86 46 2 140 224 238 320 4.01e-16 76.6
MS.gene013373.t1 AT4G24240 41.860 86 46 2 140 224 257 339 8.89e-16 75.9
MS.gene013373.t1 AT3G01080 56.140 57 24 1 167 223 205 260 9.50e-16 75.5
MS.gene013373.t1 AT1G68150 38.776 98 56 2 130 223 195 292 1.35e-15 75.5
MS.gene013373.t1 AT1G80840 44.828 87 43 4 142 223 117 203 2.23e-15 74.3
MS.gene013373.t1 AT4G01250 42.308 78 42 2 147 223 110 185 1.49e-14 72.0
MS.gene013373.t1 AT1G69810 43.421 76 41 2 150 223 128 203 5.21e-14 70.9
MS.gene013373.t1 AT1G69810 43.421 76 41 2 150 223 186 261 6.69e-14 70.9
MS.gene013373.t1 AT1G66550 38.776 98 55 2 130 222 69 166 6.69e-14 69.7
MS.gene013373.t1 AT1G29280 38.202 89 44 2 136 223 53 131 1.13e-13 68.9
MS.gene013373.t1 AT1G66550 47.458 59 28 1 167 222 103 161 2.24e-13 68.2
MS.gene013373.t1 AT3G56400 33.654 104 65 2 135 234 87 190 2.83e-13 68.2
MS.gene013373.t1 AT1G66560 47.458 59 28 1 167 222 103 161 3.79e-13 67.4
MS.gene013373.t1 AT2G34830 38.202 89 52 3 138 223 184 272 8.21e-13 67.8
MS.gene013373.t1 AT2G34830 38.202 89 52 3 138 223 193 281 9.51e-13 67.4
MS.gene013373.t1 AT1G66600 40.506 79 43 2 166 241 102 179 1.05e-12 65.9
MS.gene013373.t1 AT1G30650 33.333 99 58 2 133 223 176 274 1.69e-12 66.6
MS.gene013373.t1 AT5G01900 45.312 64 32 2 161 221 104 167 2.75e-12 65.1
MS.gene013373.t1 AT2G40740 50.000 58 26 1 167 221 173 230 2.86e-12 65.5
MS.gene013373.t1 AT5G52830 49.123 57 28 1 168 223 166 222 2.95e-12 65.9
MS.gene013373.t1 AT4G23550 44.262 61 33 1 164 223 137 197 3.26e-12 65.5
MS.gene013373.t1 AT2G40740 50.000 58 26 1 167 221 182 239 3.56e-12 65.1
MS.gene013373.t1 AT4G12020 43.478 69 38 1 166 234 467 534 3.58e-12 66.2
MS.gene013373.t1 AT4G12020 70.000 40 12 0 148 187 622 661 7.34e-12 65.5
MS.gene013373.t1 AT4G12020 43.478 69 38 1 166 234 467 534 3.61e-12 66.2
MS.gene013373.t1 AT4G12020 70.000 40 12 0 148 187 622 661 7.27e-12 65.5
MS.gene013373.t1 AT4G12020 43.478 69 38 1 166 234 467 534 3.66e-12 66.2
MS.gene013373.t1 AT4G12020 70.000 40 12 0 148 187 622 661 7.30e-12 65.5
MS.gene013373.t1 AT4G12020 43.478 69 38 1 166 234 467 534 3.66e-12 66.2
MS.gene013373.t1 AT4G12020 70.000 40 12 0 148 187 622 661 7.30e-12 65.5
MS.gene013373.t1 AT4G12020 43.478 69 38 1 166 234 467 534 3.68e-12 66.2
MS.gene013373.t1 AT4G12020 70.000 40 12 0 148 187 622 661 7.69e-12 65.1
MS.gene013373.t1 AT4G12020 43.478 69 38 1 166 234 467 534 3.78e-12 66.2
MS.gene013373.t1 AT4G12020 70.000 40 12 0 148 187 622 661 7.54e-12 65.5
MS.gene013373.t1 AT4G12020 43.478 69 38 1 166 234 467 534 3.87e-12 66.2
MS.gene013373.t1 AT4G12020 70.000 40 12 0 148 187 622 661 7.65e-12 65.1
MS.gene013373.t1 AT4G12020 43.478 69 38 1 166 234 400 467 3.88e-12 66.2
MS.gene013373.t1 AT4G12020 70.000 40 12 0 148 187 555 594 8.42e-12 65.1
MS.gene013373.t1 AT4G12020 43.478 69 38 1 166 234 467 534 3.98e-12 66.2
MS.gene013373.t1 AT4G12020 70.000 40 12 0 148 187 622 661 7.73e-12 65.1
MS.gene013373.t1 AT4G12020 43.478 69 38 1 166 234 467 534 3.98e-12 66.2
MS.gene013373.t1 AT4G12020 70.000 40 12 0 148 187 622 661 7.73e-12 65.1
MS.gene013373.t1 AT4G12020 43.478 69 38 1 166 234 467 534 5.60e-12 65.5
MS.gene013373.t1 AT4G12020 70.000 40 12 0 148 187 622 661 9.72e-12 65.1
MS.gene013373.t1 AT1G80590 46.552 58 28 1 168 222 86 143 1.73e-11 62.4
MS.gene013373.t1 AT5G45050 35.165 91 58 1 134 223 1008 1098 3.02e-11 63.5
MS.gene013373.t1 AT5G22570 46.552 58 28 1 168 222 111 168 3.15e-11 62.4
MS.gene013373.t1 AT5G24110 39.759 83 38 2 165 235 111 193 3.37e-11 62.4
MS.gene013373.t1 AT5G45050 35.165 91 58 1 134 223 1147 1237 3.39e-11 63.2
MS.gene013373.t1 AT5G45050 35.165 91 58 1 134 223 1119 1209 3.58e-11 63.2
MS.gene013373.t1 AT2G40750 34.188 117 69 2 120 228 100 216 5.12e-11 62.0

Find 62 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCATCTTACTTCTAGTTT+TGG 0.279525 3.4:-86451978 MS.gene013373:CDS
TCAGCAAAATTTGCAGCTTC+AGG 0.298513 3.4:+86452044 None:intergenic
TATGTGGTTATCACCATTCT+TGG 0.301275 3.4:+86450225 None:intergenic
GATTCTTCAAGTTCATTTGA+TGG 0.326616 3.4:+86450180 None:intergenic
AAACATGACCTTACCTCCTT+TGG 0.332541 3.4:-86452126 MS.gene013373:CDS
CTGAACTTACTAATTTCTTC+TGG 0.337305 3.4:-86450146 MS.gene013373:CDS
ACAGATCCAAAGTGAATTCA+TGG 0.376673 3.4:-86451929 MS.gene013373:intron
CTTTGGATCTGTTCAAAGAA+AGG 0.382028 3.4:+86451940 None:intergenic
AAAGGAGGTAAGGTCATGTT+TGG 0.420084 3.4:+86452128 None:intergenic
TCATGAGATCCCTATGCAAA+TGG 0.425861 3.4:-86452171 MS.gene013373:CDS
CCATAGCTTGTTTGATCAAG+AGG 0.452922 3.4:-86452198 MS.gene013373:CDS
TATGATTGAATTTAGGGCAT+GGG 0.455045 3.4:-86451578 MS.gene013373:intron
CATCATCATAATCAACAACT+AGG 0.465924 3.4:-86451499 MS.gene013373:CDS
TACCTTTCAAAGATTGATGA+TGG 0.466958 3.4:+86452096 None:intergenic
TGAAGAAAATGAAGGGAAGA+AGG 0.467112 3.4:-86451459 MS.gene013373:CDS
CATGAGATCCCTATGCAAAT+GGG 0.477999 3.4:-86452170 MS.gene013373:CDS
ATCTCACCATGAATTCACTT+TGG 0.483028 3.4:+86451923 None:intergenic
GAAGGAAGGTGAGGGAGCCT+AGG 0.492345 3.4:-86451441 MS.gene013373:CDS
CATAAAGATGAAGAAAATGA+AGG 0.501193 3.4:-86451467 MS.gene013373:CDS
AGAAGTAACTGATAGCTTGA+TGG 0.501267 3.4:-86451554 MS.gene013373:CDS
AAGGTCATGTTTGGAGGGAA+AGG 0.503288 3.4:+86452137 None:intergenic
ACGTGTGGAGCGGTTGGCTG+AGG 0.504103 3.4:-86450250 MS.gene013373:CDS
TTGAACAGCTGTTGCAAGGA+GGG 0.504686 3.4:+86452019 None:intergenic
TGAAGGGAAGAAGGAAGGTG+AGG 0.508932 3.4:-86451450 MS.gene013373:CDS
ATCTGTTCAAAGAAAGGAGT+TGG 0.513213 3.4:+86451946 None:intergenic
CCTCTTGATCAAACAAGCTA+TGG 0.514036 3.4:+86452198 None:intergenic
GAAGTAACTGATAGCTTGAT+GGG 0.521967 3.4:-86451553 MS.gene013373:CDS
AGCATGTCTTCCTTCATATG+TGG 0.525478 3.4:+86450209 None:intergenic
GCAATTATCCAAAGGAGGTA+AGG 0.525699 3.4:+86452118 None:intergenic
GAAAATGAAGGGAAGAAGGA+AGG 0.526149 3.4:-86451455 MS.gene013373:CDS
ATGATTGAATTTAGGGCATG+GGG 0.530214 3.4:-86451577 MS.gene013373:intron
GAAGGGAAGAAGGAAGGTGA+GGG 0.532669 3.4:-86451449 MS.gene013373:CDS
GGAGGTAAGGTCATGTTTGG+AGG 0.539020 3.4:+86452131 None:intergenic
GGTTACAAGTGGAGGAAGTA+CGG 0.540793 3.4:-86451376 MS.gene013373:CDS
ATCATCATAATCAACAACTA+GGG 0.543445 3.4:-86451498 MS.gene013373:CDS
TGCCATCATCAATCTTTGAA+AGG 0.544773 3.4:-86452098 MS.gene013373:CDS
TATTGAACCCCATTTGCATA+GGG 0.544992 3.4:+86452162 None:intergenic
ATATTGAACCCCATTTGCAT+AGG 0.547777 3.4:+86452161 None:intergenic
ATGGTGATAACCACATATGA+AGG 0.551016 3.4:-86450219 MS.gene013373:CDS
AAAGAAACGTGTGGAGCGGT+TGG 0.558270 3.4:-86450256 MS.gene013373:CDS
GCTTCAGGAGAAAGTGATGA+AGG 0.566189 3.4:+86452059 None:intergenic
GACGTGGATGTGTTGGATGA+TGG 0.572793 3.4:-86451397 MS.gene013373:CDS
CATGAGCGACGTGGATGTGT+TGG 0.578149 3.4:-86451404 MS.gene013373:CDS
GAGGTAAGGTCATGTTTGGA+GGG 0.578786 3.4:+86452132 None:intergenic
GAGGAAGTACGGACAGAAAG+TGG 0.580020 3.4:-86451365 MS.gene013373:CDS
ATAAAGATGAAGAAAATGAA+GGG 0.586041 3.4:-86451466 MS.gene013373:CDS
GTTGGCTGAGGATCCAAGAA+TGG 0.588263 3.4:-86450238 MS.gene013373:CDS
TAAAGAACACACAGCATCCA+AGG 0.591239 3.4:-86451342 MS.gene013373:intron
CAACACATCCACGTCGCTCA+TGG 0.593426 3.4:+86451405 None:intergenic
AGATGATCTTCAAATTCTCG+TGG 0.612771 3.4:+86451993 None:intergenic
GACAATTATCTTGTGTGCAA+CGG 0.619219 3.4:+86450283 None:intergenic
CTTCAAGACCATGAGCGACG+TGG 0.626402 3.4:-86451413 MS.gene013373:CDS
TGGATGATGGTTACAAGTGG+AGG 0.635586 3.4:-86451384 MS.gene013373:CDS
ATGAGATCCCTATGCAAATG+GGG 0.638441 3.4:-86452169 MS.gene013373:CDS
TGATGATGGCAATTATCCAA+AGG 0.643521 3.4:+86452110 None:intergenic
ATGGTCTTGAAGCAAAACCT+AGG 0.654328 3.4:+86451424 None:intergenic
TTGTCGAGTAAAGAAACGTG+TGG 0.654452 3.4:-86450265 MS.gene013373:CDS
TCATCATAATCAACAACTAG+GGG 0.662114 3.4:-86451497 MS.gene013373:CDS
TGTTGGATGATGGTTACAAG+TGG 0.666245 3.4:-86451387 MS.gene013373:CDS
TTTGAACAGCTGTTGCAAGG+AGG 0.670990 3.4:+86452018 None:intergenic
TGATGGCAATTATCCAAAGG+AGG 0.672690 3.4:+86452113 None:intergenic
GAGTAAAGAAACGTGTGGAG+CGG 0.683085 3.4:-86450260 MS.gene013373:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAAATCTTAACATTTT+GGG + chr3.4:86451475-86451494 None:intergenic 10.0%
!!! GTTTATTAGAATTTTATATT+TGG - chr3.4:86451135-86451154 MS.gene013373:intron 10.0%
!!! TAAAATAAATCTTAACATTT+TGG + chr3.4:86451476-86451495 None:intergenic 10.0%
!! ATTTACCTATCAAAAAATAT+AGG - chr3.4:86450661-86450680 MS.gene013373:intron 15.0%
!! GATATGTTATATATATATGT+AGG - chr3.4:86450573-86450592 MS.gene013373:intron 15.0%
!!! GTTTGCTTATATTTTTTTAA+GGG - chr3.4:86450699-86450718 MS.gene013373:intron 15.0%
!!! TGTTTGCTTATATTTTTTTA+AGG - chr3.4:86450698-86450717 MS.gene013373:intron 15.0%
!!! TTTGCTTATATTTTTTTAAG+GGG - chr3.4:86450700-86450719 MS.gene013373:intron 15.0%
!! ATAAAGATGAAGAAAATGAA+GGG - chr3.4:86450901-86450920 MS.gene013373:intron 20.0%
!! GTGGAATATTTGAAAATTTA+AGG + chr3.4:86450477-86450496 None:intergenic 20.0%
!! TTCTAATAAACAATAATGAG+AGG + chr3.4:86451126-86451145 None:intergenic 20.0%
!!! ATTTGCCTATATTTTTTGAT+AGG + chr3.4:86450669-86450688 None:intergenic 20.0%
!!! TATAGTACTATTTTCCTTTT+TGG + chr3.4:86452011-86452030 None:intergenic 20.0%
!!! TATTTGGCTTATGATTATTT+TGG - chr3.4:86451151-86451170 MS.gene013373:intron 20.0%
!!! TTTGATAAGTTTTCATTTGA+GGG + chr3.4:86451621-86451640 None:intergenic 20.0%
!!! TTTTGATAAGTTTTCATTTG+AGG + chr3.4:86451622-86451641 None:intergenic 20.0%
! AAAAGAGAGAAAATTTGAAG+TGG + chr3.4:86451066-86451085 None:intergenic 25.0%
! AAACTTAACTCTCTTTACAA+AGG + chr3.4:86450759-86450778 None:intergenic 25.0%
! AAGTAAAAACCATCATTACT+AGG + chr3.4:86451888-86451907 None:intergenic 25.0%
! ATCATCATAATCAACAACTA+GGG - chr3.4:86450869-86450888 MS.gene013373:intron 25.0%
! CATAAAGATGAAGAAAATGA+AGG - chr3.4:86450900-86450919 MS.gene013373:intron 25.0%
! GGTTATACTCTAACATATAT+AGG + chr3.4:86451361-86451380 None:intergenic 25.0%
! GTACAGCATAAATAAAAAAC+AGG + chr3.4:86451913-86451932 None:intergenic 25.0%
! GTATTAAGGACAAAGAAAAT+GGG + chr3.4:86451948-86451967 None:intergenic 25.0%
! GTTGGATATGATTGAATTTA+GGG - chr3.4:86450783-86450802 MS.gene013373:intron 25.0%
! GTTTGTGATTAATATGTAAG+TGG + chr3.4:86450640-86450659 None:intergenic 25.0%
! TAATAAACAATAATGAGAGG+AGG + chr3.4:86451123-86451142 None:intergenic 25.0%
! TAATACCTTCCTATATAACT+TGG - chr3.4:86451962-86451981 MS.gene013373:CDS 25.0%
!! CTTCATTTTCTTCATCTTTA+TGG + chr3.4:86450902-86450921 None:intergenic 25.0%
!! TTGATAAGTTTTCATTTGAG+GGG + chr3.4:86451620-86451639 None:intergenic 25.0%
!!! AGTTATATAGGAAGGTATTA+AGG + chr3.4:86451962-86451981 None:intergenic 25.0%
AAATATAGATACTAGCTGTC+TGG - chr3.4:86450531-86450550 MS.gene013373:intron 30.0%
AACATTTGCTTGAATTTGTG+TGG - chr3.4:86451745-86451764 MS.gene013373:intron 30.0%
ACATTTGCTTGAATTTGTGT+GGG - chr3.4:86451746-86451765 MS.gene013373:intron 30.0%
AGATTTCACTATATGTCTTC+TGG - chr3.4:86451219-86451238 MS.gene013373:intron 30.0%
CATCATCATAATCAACAACT+AGG - chr3.4:86450868-86450887 MS.gene013373:intron 30.0%
CTGAACTTACTAATTTCTTC+TGG - chr3.4:86452221-86452240 MS.gene013373:CDS 30.0%
CTGTGTAATCCAAGTTATAT+AGG + chr3.4:86451974-86451993 None:intergenic 30.0%
GATTTCACTATATGTCTTCT+GGG - chr3.4:86451220-86451239 MS.gene013373:intron 30.0%
GGTATTAAGGACAAAGAAAA+TGG + chr3.4:86451949-86451968 None:intergenic 30.0%
GGTTGGATATGATTGAATTT+AGG - chr3.4:86450782-86450801 MS.gene013373:intron 30.0%
GTAATCCAAGTTATATAGGA+AGG + chr3.4:86451970-86451989 None:intergenic 30.0%
TACCTTTCAAAGATTGATGA+TGG + chr3.4:86450274-86450293 None:intergenic 30.0%
TATATACTGAATGAGTGCAA+AGG + chr3.4:86451402-86451421 None:intergenic 30.0%
TATGCGTAATGTTGAAAGTT+AGG - chr3.4:86451293-86451312 MS.gene013373:intron 30.0%
TATGTACTTTAGCACCAAAA+AGG - chr3.4:86451994-86452013 MS.gene013373:CDS 30.0%
TCATCATAATCAACAACTAG+GGG - chr3.4:86450870-86450889 MS.gene013373:intron 30.0%
! AGAGTCCTAATTTTCAACAT+CGG + chr3.4:86451262-86451281 None:intergenic 30.0%
! ATATGATTGAATTTAGGGCA+TGG - chr3.4:86450788-86450807 MS.gene013373:intron 30.0%
! GATTCTTCAAGTTCATTTGA+TGG + chr3.4:86452190-86452209 None:intergenic 30.0%
! GTAAAGAGAGTTAAGTTTTG+TGG - chr3.4:86450761-86450780 MS.gene013373:intron 30.0%
! TATGATTGAATTTAGGGCAT+GGG - chr3.4:86450789-86450808 MS.gene013373:intron 30.0%
! TGATAAGTTTTCATTTGAGG+GGG + chr3.4:86451619-86451638 None:intergenic 30.0%
!! AGTAAGAAGTGTCATATTGT+TGG + chr3.4:86451706-86451725 None:intergenic 30.0%
!!! GATCATCTTACTTCTAGTTT+TGG - chr3.4:86450389-86450408 MS.gene013373:intron 30.0%
!!! GATTATTTTGGTGCTTAAGA+GGG - chr3.4:86451163-86451182 MS.gene013373:intron 30.0%
!!! TGATTATTTTGGTGCTTAAG+AGG - chr3.4:86451162-86451181 MS.gene013373:intron 30.0%
AACCATCATTACTAGGAGAA+AGG + chr3.4:86451881-86451900 None:intergenic 35.0%
ACAGATCCAAAGTGAATTCA+TGG - chr3.4:86450438-86450457 MS.gene013373:intron 35.0%
ACCATCATTACTAGGAGAAA+GGG + chr3.4:86451880-86451899 None:intergenic 35.0%
AGAAGTAACTGATAGCTTGA+TGG - chr3.4:86450813-86450832 MS.gene013373:intron 35.0%
AGATGATCTTCAAATTCTCG+TGG + chr3.4:86450377-86450396 None:intergenic 35.0%
ATATTGAACCCCATTTGCAT+AGG + chr3.4:86450209-86450228 None:intergenic 35.0%
ATCTCACCATGAATTCACTT+TGG + chr3.4:86450447-86450466 None:intergenic 35.0%
ATCTGTTCAAAGAAAGGAGT+TGG + chr3.4:86450424-86450443 None:intergenic 35.0%
ATGGTGATAACCACATATGA+AGG - chr3.4:86452148-86452167 MS.gene013373:CDS 35.0%
CTCATAATTCATCCACCTAT+AGG + chr3.4:86451568-86451587 None:intergenic 35.0%
CTTTGGATCTGTTCAAAGAA+AGG + chr3.4:86450430-86450449 None:intergenic 35.0%
GAAGTAACTGATAGCTTGAT+GGG - chr3.4:86450814-86450833 MS.gene013373:intron 35.0%
GACAACACTGATAATCATTG+AGG - chr3.4:86451185-86451204 MS.gene013373:intron 35.0%
GACAATTATCTTGTGTGCAA+CGG + chr3.4:86452087-86452106 None:intergenic 35.0%
GGAGATAATGAATACTACCT+TGG + chr3.4:86451045-86451064 None:intergenic 35.0%
GTTTGCCGATGTTGAAAATT+AGG - chr3.4:86451254-86451273 MS.gene013373:intron 35.0%
TATGTGGTTATCACCATTCT+TGG + chr3.4:86452145-86452164 None:intergenic 35.0%
TATTGAACCCCATTTGCATA+GGG + chr3.4:86450208-86450227 None:intergenic 35.0%
TGAAGAAAATGAAGGGAAGA+AGG - chr3.4:86450908-86450927 MS.gene013373:intron 35.0%
TGCCATCATCAATCTTTGAA+AGG - chr3.4:86450269-86450288 MS.gene013373:CDS 35.0%
TTGATGGGAAAAAGAAGTAG+TGG - chr3.4:86450829-86450848 MS.gene013373:intron 35.0%
! ACAATTTTGCTTGACGACAT+AGG - chr3.4:86451425-86451444 MS.gene013373:CDS 35.0%
! ATGATTGAATTTAGGGCATG+GGG - chr3.4:86450790-86450809 MS.gene013373:intron 35.0%
! ATGTATTTTGTGGGTCATGA+GGG - chr3.4:86451539-86451558 MS.gene013373:CDS 35.0%
! TTGCACGACATGTATTTTGT+GGG - chr3.4:86451530-86451549 MS.gene013373:CDS 35.0%
! TTTGCACGACATGTATTTTG+TGG - chr3.4:86451529-86451548 MS.gene013373:CDS 35.0%
!! AGAGAGTTAAGTTTTGTGGT+TGG - chr3.4:86450765-86450784 MS.gene013373:intron 35.0%
!! TGATGATGGCAATTATCCAA+AGG + chr3.4:86450260-86450279 None:intergenic 35.0%
!!! CATCTTACTTCTAGTTTTGG+AGG - chr3.4:86450392-86450411 MS.gene013373:intron 35.0%
AAACATGACCTTACCTCCTT+TGG - chr3.4:86450241-86450260 MS.gene013373:CDS 40.0%
AAAGGAGGTAAGGTCATGTT+TGG + chr3.4:86450242-86450261 None:intergenic 40.0%
AACGGTAGTAGCTTCTACAA+AGG + chr3.4:86452069-86452088 None:intergenic 40.0%
ACCCTTTCTCCTAGTAATGA+TGG - chr3.4:86451876-86451895 MS.gene013373:intron 40.0%
AGCATGTCTTCCTTCATATG+TGG + chr3.4:86452161-86452180 None:intergenic 40.0%
AGGAGAAACTTCTTGGTACT+TGG + chr3.4:86451382-86451401 None:intergenic 40.0%
AGTGCAAAGGAGAAACTTCT+TGG + chr3.4:86451389-86451408 None:intergenic 40.0%
ATGAGATCCCTATGCAAATG+GGG - chr3.4:86450198-86450217 MS.gene013373:CDS 40.0%
ATGGGAAAAAGAAGTAGTGG+AGG - chr3.4:86450832-86450851 MS.gene013373:intron 40.0%
CATGAGATCCCTATGCAAAT+GGG - chr3.4:86450197-86450216 MS.gene013373:CDS 40.0%
CCTCTTGATCAAACAAGCTA+TGG + chr3.4:86450172-86450191 None:intergenic 40.0%
GAAAATGAAGGGAAGAAGGA+AGG - chr3.4:86450912-86450931 MS.gene013373:intron 40.0%
GCAATTATCCAAAGGAGGTA+AGG + chr3.4:86450252-86450271 None:intergenic 40.0%
TAAAGAACACACAGCATCCA+AGG - chr3.4:86451025-86451044 MS.gene013373:intron 40.0%
TCAGCAAAATTTGCAGCTTC+AGG + chr3.4:86450326-86450345 None:intergenic 40.0%
TCATGAGATCCCTATGCAAA+TGG - chr3.4:86450196-86450215 MS.gene013373:CDS 40.0%
TGATGGCAATTATCCAAAGG+AGG + chr3.4:86450257-86450276 None:intergenic 40.0%
TGTGGGAGCTAATAAAAGTG+TGG - chr3.4:86451763-86451782 MS.gene013373:intron 40.0%
TTGTCGAGTAAAGAAACGTG+TGG - chr3.4:86452102-86452121 MS.gene013373:CDS 40.0%
! ATGGTCTTGAAGCAAAACCT+AGG + chr3.4:86450946-86450965 None:intergenic 40.0%
! CATGTATTTTGTGGGTCATG+AGG - chr3.4:86451538-86451557 MS.gene013373:CDS 40.0%
! GTGGGAGCTAATAAAAGTGT+GGG - chr3.4:86451764-86451783 MS.gene013373:intron 40.0%
! GTTTTTGAACAGCTGTTGCA+AGG + chr3.4:86450355-86450374 None:intergenic 40.0%
! TGGGAGCTAATAAAAGTGTG+GGG - chr3.4:86451765-86451784 MS.gene013373:intron 40.0%
! TGTATTTTGTGGGTCATGAG+GGG - chr3.4:86451540-86451559 MS.gene013373:CDS 40.0%
! TGTTGGATGATGGTTACAAG+TGG - chr3.4:86450980-86450999 MS.gene013373:intron 40.0%
!! CCATAGCTTGTTTGATCAAG+AGG - chr3.4:86450169-86450188 MS.gene013373:CDS 40.0%
!!! CTTACTTCTAGTTTTGGAGG+AGG - chr3.4:86450395-86450414 MS.gene013373:intron 40.0%
AAGGTCATGTTTGGAGGGAA+AGG + chr3.4:86450233-86450252 None:intergenic 45.0%
GAGGTAAGGTCATGTTTGGA+GGG + chr3.4:86450238-86450257 None:intergenic 45.0%
GAGTAAAGAAACGTGTGGAG+CGG - chr3.4:86452107-86452126 MS.gene013373:CDS 45.0%
GCTATAGTTCACATGCATGG+TGG + chr3.4:86450496-86450515 None:intergenic 45.0%
GCTTCAGGAGAAAGTGATGA+AGG + chr3.4:86450311-86450330 None:intergenic 45.0%
GGTTACAAGTGGAGGAAGTA+CGG - chr3.4:86450991-86451010 MS.gene013373:intron 45.0%
GTGGCTATAGTTCACATGCA+TGG + chr3.4:86450499-86450518 None:intergenic 45.0%
TTGAACAGCTGTTGCAAGGA+GGG + chr3.4:86450351-86450370 None:intergenic 45.0%
TTTGAACAGCTGTTGCAAGG+AGG + chr3.4:86450352-86450371 None:intergenic 45.0%
TTTGCTTGACGACATAGGTG+TGG - chr3.4:86451430-86451449 MS.gene013373:CDS 45.0%
! TGGATGATGGTTACAAGTGG+AGG - chr3.4:86450983-86451002 MS.gene013373:intron 45.0%
!!! ACTTCTAGTTTTGGAGGAGG+AGG - chr3.4:86450398-86450417 MS.gene013373:intron 45.0%
!! TATATTTAATAAAAATTAAG+TGG + chr3.4:86450518-86450537 None:intergenic 5.0%
AAAGAAACGTGTGGAGCGGT+TGG - chr3.4:86452111-86452130 MS.gene013373:CDS 50.0%
GAAGGGAAGAAGGAAGGTGA+GGG - chr3.4:86450918-86450937 MS.gene013373:intron 50.0%
GACGTGGATGTGTTGGATGA+TGG - chr3.4:86450970-86450989 MS.gene013373:intron 50.0%
GGAGGTAAGGTCATGTTTGG+AGG + chr3.4:86450239-86450258 None:intergenic 50.0%
GTTGGCTGAGGATCCAAGAA+TGG - chr3.4:86452129-86452148 MS.gene013373:CDS 50.0%
TGAAGGGAAGAAGGAAGGTG+AGG - chr3.4:86450917-86450936 MS.gene013373:intron 50.0%
! GAGGAAGTACGGACAGAAAG+TGG - chr3.4:86451002-86451021 MS.gene013373:intron 50.0%
CAACACATCCACGTCGCTCA+TGG + chr3.4:86450965-86450984 None:intergenic 55.0%
CATGAGCGACGTGGATGTGT+TGG - chr3.4:86450963-86450982 MS.gene013373:intron 55.0%
CTTCAAGACCATGAGCGACG+TGG - chr3.4:86450954-86450973 MS.gene013373:intron 55.0%
TCATGAGGGGAGCCTATAGG+TGG - chr3.4:86451553-86451572 MS.gene013373:CDS 55.0%
GAAGGAAGGTGAGGGAGCCT+AGG - chr3.4:86450926-86450945 MS.gene013373:intron 60.0%
GGGTCATGAGGGGAGCCTAT+AGG - chr3.4:86451550-86451569 MS.gene013373:CDS 60.0%
! ACGTGTGGAGCGGTTGGCTG+AGG - chr3.4:86452117-86452136 MS.gene013373:CDS 65.0%
! GAGGGGGAGCGTGTCGAGAT+GGG + chr3.4:86451603-86451622 None:intergenic 65.0%
! TGAGGGGGAGCGTGTCGAGA+TGG + chr3.4:86451604-86451623 None:intergenic 65.0%
! GGGGAGCGTGTCGAGATGGG+TGG + chr3.4:86451600-86451619 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 86450143 86452246 86450143 ID=MS.gene013373
chr3.4 mRNA 86450143 86452246 86450143 ID=MS.gene013373.t1;Parent=MS.gene013373
chr3.4 exon 86451930 86452246 86451930 ID=MS.gene013373.t1.exon1;Parent=MS.gene013373.t1
chr3.4 CDS 86451930 86452246 86451930 ID=cds.MS.gene013373.t1;Parent=MS.gene013373.t1
chr3.4 exon 86451343 86451585 86451343 ID=MS.gene013373.t1.exon2;Parent=MS.gene013373.t1
chr3.4 CDS 86451343 86451585 86451343 ID=cds.MS.gene013373.t1;Parent=MS.gene013373.t1
chr3.4 exon 86450143 86450314 86450143 ID=MS.gene013373.t1.exon3;Parent=MS.gene013373.t1
chr3.4 CDS 86450143 86450314 86450143 ID=cds.MS.gene013373.t1;Parent=MS.gene013373.t1
Gene Sequence

>MS.gene013373

ATGTCAACAACAAATATTGTTAATCACCATAGCTTGTTTGATCAAGAGGAAGATCATGAGATCCCTATGCAAATGGGGTTCAATATTCCTTTCCCTCCAAACATGACCTTACCTCCTTTGGATAATTGCCATCATCAATCTTTGAAAGGTATCAGTGCAATAACACCTTCATCACTTTCTCCTGAAGCTGCAAATTTTGCTGAAACCCTCCTTGCAACAGCTGTTCAAAAACCACGAGAATTTGAAGATCATCTTACTTCTAGTTTTGGAGGAGGAGGCCAACTCCTTTCTTTGAACAGATCCAAAGTGAATTCATGGTGAGATAGTACTACCTTAAATTTTCAAATATTCCACCATGCATGTGAACTATAGCCACTTAATTTTTATTAAATATAGATACTAGCTGTCTGGTATGAGTTATGATGTCAAAGATATGTTATATATATATGTAGGAATTCTAGAGTTTAATCTGCTACTAATTAACAAATCTTCTGCCACTTACATATTAATCACAAACAATTTACCTATCAAAAAATATAGGCAAATTTAAATTCTTGTTTGCTTATATTTTTTTAAGGGGAAAAAAAAACTAATTTGCTTTTTTGTAAAAATTCCTTTGTAAAGAGAGTTAAGTTTTGTGGTTGGATATGATTGAATTTAGGGCATGGGGAGAAGTAACTGATAGCTTGATGGGAAAAAGAAGTAGTGGAGGAGATGATCAACATCATCATCATAATCAACAACTAGGGGTTTCTGCCATAAAGATGAAGAAAATGAAGGGAAGAAGGAAGGTGAGGGAGCCTAGGTTTTGCTTCAAGACCATGAGCGACGTGGATGTGTTGGATGATGGTTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAGCATCCAAGGTAGTATTCATTATCTCCACTTCAAATTTTCTCTCTTTTAAATTATTTGTTTGTCTTTATGCTCTCTCTTCATCCTCCTCTCATTATTGTTTATTAGAATTTTATATTTGGCTTATGATTATTTTGGTGCTTAAGAGGGACAACACTGATAATCATTGAGGATAGTAAAACTAGATTTCACTATATGTCTTCTGGGATGTATATATTGTTTGCCGATGTTGAAAATTAGGACTCTCAAAATGTCAATATGCGTAATGTTGAAAGTTAGGAGTCTCATATGTTAATTTGATTTATAGTATTTATTTTATCAGCCTATATATGTTAGAGTATAACCAAGTACCAAGAAGTTTCTCCTTTGCACTCATTCAGTATATATATACAATTTTGCTTGACGACATAGGTGTGGTTTAAACGATACATGTTCACCCAAAATGTTAAGATTTATTTTATAAATCAACTCATTTTTATATTCTACACAAACATTTGCACGACATGTATTTTGTGGGTCATGAGGGGAGCCTATAGGTGGATGAATTATGAGTGAGTCTATCCACCCATCTCGACACGCTCCCCCTCAAATGAAAACTTATCAAAATACACTTTCACGATGTTGACTCACAACATCAACGTTGTTGCTCAGCATTCACTAACTCACACCAACAATATGACACTTCTTACTCGCACTCGAAATATACTCTAACATTTGCTTGAATTTGTGTGGGAGCTAATAAAAGTGTGGGGATCTTCACTAATACTGAATGATGAATCACTATAGTAAAACATATGATAGAAAACTTTAAAGACAATGATTAAATGAATATATATTTTAACCCTTTCTCCTAGTAATGATGGTTTTTACTTTACCTGTTTTTTATTTATGCTGTACAACTGTTCAGCTCCCATTTTCTTTGTCCTTAATACCTTCCTATATAACTTGGATTACACAGTATGTACTTTAGCACCAAAAAGGAAAATAGTACTATATATAATATGTCTTATGATGTGTTTTGCGTACATTGCCTTTGTAGAAGCTACTACCGTTGCACACAAGATAATTGTCGAGTAAAGAAACGTGTGGAGCGGTTGGCTGAGGATCCAAGAATGGTGATAACCACATATGAAGGAAGACATGCTCACTCTCCATCAAATGAACTTGAAGAATCACAAACTCAATCTGAACTTACTAATTTCTTCTGGTAG
Protein sequence

>MS.gene013373.t1

MSTTNIVNHHSLFDQEEDHEIPMQMGFNIPFPPNMTLPPLDNCHHQSLKGISAITPSSLSPEAANFAETLLATAVQKPREFEDHLTSSFGGGGQLLSLNRSKVNSWAWGEVTDSLMGKRSSGGDDQHHHHNQQLGVSAIKMKKMKGRRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSNELEESQTQSELTNFFW