Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013435.t1 | KEH35534.1 | 83.7 | 313 | 51 | 0 | 1 | 313 | 1 | 313 | 7.80E-146 | 527.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013435.t1 | Q7XJK8 | 29.0 | 221 | 143 | 4 | 6 | 217 | 2 | 217 | 1.7e-16 | 89.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013435.t1 | A0A072V0I7 | 83.7 | 313 | 51 | 0 | 1 | 313 | 1 | 313 | 5.6e-146 | 527.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013435.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013435.t1 | MTR_3g093900 | 75.709 | 564 | 84 | 3 | 1 | 511 | 1 | 564 | 0.0 | 817 |
| MS.gene013435.t1 | MTR_4g019670 | 47.407 | 540 | 228 | 9 | 1 | 511 | 1 | 513 | 5.99e-124 | 372 |
| MS.gene013435.t1 | MTR_7g106510 | 46.269 | 536 | 224 | 9 | 1 | 511 | 1 | 497 | 6.69e-123 | 369 |
| MS.gene013435.t1 | MTR_8g467500 | 48.540 | 274 | 125 | 2 | 13 | 274 | 13 | 282 | 7.97e-69 | 223 |
| MS.gene013435.t1 | MTR_5g075380 | 33.548 | 155 | 103 | 0 | 7 | 161 | 4 | 158 | 1.14e-24 | 100 |
| MS.gene013435.t1 | MTR_4g032620 | 33.775 | 151 | 99 | 1 | 6 | 155 | 3 | 153 | 3.58e-23 | 98.6 |
| MS.gene013435.t1 | MTR_8g036130 | 35.443 | 158 | 97 | 3 | 4 | 157 | 1 | 157 | 4.99e-22 | 95.5 |
| MS.gene013435.t1 | MTR_2g016210 | 30.968 | 155 | 106 | 1 | 7 | 160 | 4 | 158 | 4.48e-21 | 92.8 |
| MS.gene013435.t1 | MTR_4g031910 | 33.544 | 158 | 104 | 1 | 4 | 160 | 1 | 158 | 4.53e-21 | 92.4 |
| MS.gene013435.t1 | MTR_3g466980 | 28.571 | 154 | 110 | 0 | 4 | 157 | 1 | 154 | 1.13e-19 | 88.2 |
| MS.gene013435.t1 | MTR_2g035610 | 35.000 | 120 | 78 | 0 | 6 | 125 | 3 | 122 | 4.67e-19 | 83.6 |
| MS.gene013435.t1 | MTR_3g065100 | 29.487 | 156 | 110 | 0 | 6 | 161 | 3 | 158 | 1.38e-18 | 85.5 |
| MS.gene013435.t1 | MTR_3g466830 | 29.299 | 157 | 111 | 0 | 6 | 162 | 2 | 158 | 1.57e-18 | 83.2 |
| MS.gene013435.t1 | MTR_3g466890 | 31.724 | 145 | 99 | 0 | 6 | 150 | 2 | 146 | 3.99e-18 | 82.0 |
| MS.gene013435.t1 | MTR_4g032290 | 31.967 | 122 | 82 | 1 | 37 | 157 | 34 | 155 | 4.64e-17 | 80.9 |
| MS.gene013435.t1 | MTR_4g032260 | 36.458 | 96 | 61 | 0 | 37 | 132 | 34 | 129 | 3.16e-15 | 73.6 |
| MS.gene013435.t1 | MTR_1g090783 | 26.897 | 145 | 105 | 1 | 6 | 150 | 2 | 145 | 6.73e-15 | 72.8 |
| MS.gene013435.t1 | MTR_1g090710 | 28.758 | 153 | 96 | 3 | 6 | 157 | 3 | 143 | 1.60e-14 | 71.6 |
| MS.gene013435.t1 | MTR_1g090697 | 29.032 | 155 | 109 | 1 | 6 | 160 | 3 | 156 | 3.44e-14 | 70.5 |
| MS.gene013435.t1 | MTR_3g031100 | 25.490 | 153 | 113 | 1 | 6 | 157 | 3 | 155 | 5.75e-14 | 72.0 |
| MS.gene013435.t1 | MTR_3g466900 | 28.571 | 126 | 90 | 0 | 35 | 160 | 2 | 127 | 6.43e-14 | 69.3 |
| MS.gene013435.t1 | MTR_4g028800 | 41.429 | 70 | 39 | 1 | 7 | 76 | 4 | 71 | 6.59e-14 | 67.0 |
| MS.gene013435.t1 | MTR_3g466930 | 27.778 | 126 | 91 | 0 | 35 | 160 | 2 | 127 | 4.17e-13 | 66.6 |
| MS.gene013435.t1 | MTR_5g047580 | 28.472 | 144 | 101 | 2 | 6 | 149 | 3 | 144 | 5.40e-12 | 64.3 |
| MS.gene013435.t1 | MTR_1g077390 | 28.244 | 131 | 93 | 1 | 6 | 136 | 3 | 132 | 2.14e-11 | 62.8 |
| MS.gene013435.t1 | MTR_7g055800 | 31.250 | 96 | 51 | 2 | 18 | 113 | 2 | 82 | 2.43e-11 | 60.5 |
| MS.gene013435.t1 | MTR_1g077300 | 31.304 | 115 | 78 | 1 | 6 | 120 | 3 | 116 | 4.12e-11 | 61.6 |
| MS.gene013435.t1 | MTR_4g063790 | 29.293 | 99 | 70 | 0 | 8 | 106 | 5 | 103 | 5.58e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013435.t1 | AT5G27960 | 33.813 | 139 | 84 | 1 | 7 | 137 | 2 | 140 | 4.38e-20 | 91.7 |
| MS.gene013435.t1 | AT5G26650 | 35.246 | 122 | 78 | 1 | 7 | 128 | 2 | 122 | 4.91e-20 | 92.0 |
| MS.gene013435.t1 | AT1G65300 | 32.903 | 155 | 95 | 2 | 6 | 152 | 2 | 155 | 7.14e-20 | 90.1 |
| MS.gene013435.t1 | AT2G40210 | 29.825 | 171 | 117 | 2 | 4 | 174 | 1 | 168 | 7.34e-18 | 85.9 |
| MS.gene013435.t1 | AT2G28700 | 31.405 | 121 | 83 | 0 | 4 | 124 | 1 | 121 | 5.68e-15 | 76.6 |
| MS.gene013435.t1 | AT1G31630 | 33.333 | 123 | 80 | 2 | 6 | 128 | 2 | 122 | 7.03e-15 | 76.3 |
| MS.gene013435.t1 | AT3G05860 | 30.328 | 122 | 83 | 2 | 4 | 124 | 1 | 121 | 8.36e-15 | 74.7 |
| MS.gene013435.t1 | AT3G05860 | 30.328 | 122 | 83 | 2 | 4 | 124 | 1 | 121 | 1.26e-14 | 74.3 |
| MS.gene013435.t1 | AT2G15660 | 30.657 | 137 | 86 | 3 | 41 | 174 | 31 | 161 | 2.53e-14 | 73.2 |
| MS.gene013435.t1 | AT3G05860 | 30.833 | 120 | 81 | 2 | 6 | 124 | 3 | 121 | 2.55e-14 | 72.4 |
| MS.gene013435.t1 | AT5G48670 | 28.662 | 157 | 110 | 2 | 4 | 159 | 1 | 156 | 3.12e-14 | 74.3 |
| MS.gene013435.t1 | AT1G65330 | 26.012 | 173 | 119 | 2 | 8 | 172 | 4 | 175 | 6.88e-14 | 72.4 |
| MS.gene013435.t1 | AT1G31640 | 30.357 | 112 | 77 | 1 | 6 | 117 | 2 | 112 | 1.84e-12 | 69.7 |
| MS.gene013435.t1 | AT5G06500 | 27.333 | 150 | 108 | 1 | 6 | 155 | 3 | 151 | 4.47e-12 | 66.6 |
| MS.gene013435.t1 | AT5G26630 | 28.161 | 174 | 119 | 3 | 6 | 178 | 3 | 171 | 5.08e-12 | 65.9 |
| MS.gene013435.t1 | AT5G27810 | 28.571 | 91 | 65 | 0 | 34 | 124 | 3 | 93 | 3.15e-11 | 61.2 |
| MS.gene013435.t1 | AT1G22590 | 24.510 | 102 | 73 | 1 | 6 | 103 | 3 | 104 | 5.03e-11 | 61.6 |
Find 91 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGACAATATGGTAGATTT+TGG | 0.154646 | 3.4:+85625707 | MS.gene013435:CDS |
| ATGCCTCCTCAAGGCGATTT+TGG | 0.215144 | 3.4:+85626124 | MS.gene013435:CDS |
| ATACCGCCACACACATATTT+TGG | 0.262443 | 3.4:+85625902 | MS.gene013435:CDS |
| GAAAGGATTGTTCACTAAAA+TGG | 0.281180 | 3.4:+85625247 | MS.gene013435:CDS |
| CCAACAACCATTGTTAGATT+TGG | 0.295072 | 3.4:+85625757 | MS.gene013435:CDS |
| CTGACTTATGTGGAGGAAAA+AGG | 0.299572 | 3.4:+85625431 | MS.gene013435:CDS |
| TTCATTATATTTGTTGATCT+TGG | 0.314656 | 3.4:-85625477 | None:intergenic |
| GTTATTCCCTAGAGGAAATT+CGG | 0.319248 | 3.4:+85626027 | MS.gene013435:CDS |
| GATGGAAGCAACTTCAATTA+AGG | 0.320529 | 3.4:+85626793 | MS.gene013435:CDS |
| GAAGCATGTGCAGTTGTATT+TGG | 0.341907 | 3.4:+85625296 | MS.gene013435:CDS |
| TGCTTTAGACAATGACAATA+TGG | 0.384922 | 3.4:+85625697 | MS.gene013435:CDS |
| TTCGTAGCCAAAACAACATT+GGG | 0.385715 | 3.4:+85626713 | MS.gene013435:CDS |
| TTATTCCCTAGAGGAAATTC+GGG | 0.398930 | 3.4:+85626028 | MS.gene013435:CDS |
| TAACAACACAGATAGCAAAA+TGG | 0.410915 | 3.4:+85626486 | MS.gene013435:CDS |
| ACAATAGGTCAAGGAAGCTT+TGG | 0.412892 | 3.4:+85626454 | MS.gene013435:intron |
| CAACGCATCAACATCACTAC+TGG | 0.426637 | 3.4:-85626302 | None:intergenic |
| TTGATGCTTTGCTTCCTCAA+TGG | 0.441644 | 3.4:+85626542 | MS.gene013435:CDS |
| TTCGTTTAAAATTTGATGCA+TGG | 0.443888 | 3.4:-85625519 | None:intergenic |
| ACTCATTTGATCAGCTTGCT+TGG | 0.447445 | 3.4:-85625780 | None:intergenic |
| CCAAATCTAACAATGGTTGT+TGG | 0.452405 | 3.4:-85625757 | None:intergenic |
| GACATCGGCAGTGGCAGAGA+GGG | 0.454249 | 3.4:-85625671 | None:intergenic |
| CTTCCTCAATGGAATTTCAC+AGG | 0.455585 | 3.4:+85626553 | MS.gene013435:CDS |
| CTCCATGTTGCTACCTAGAT+AGG | 0.463692 | 3.4:-85626062 | None:intergenic |
| CCTAGTGGTGGTGGCGGTGT+TGG | 0.464100 | 3.4:+85625815 | MS.gene013435:CDS |
| TTTCATCAAGGCAATGTTGA+AGG | 0.479948 | 3.4:+85626649 | MS.gene013435:CDS |
| ACAGGTTCTGATAACAATGT+AGG | 0.484981 | 3.4:+85626571 | MS.gene013435:CDS |
| TAAAAGTCATGGTTGAGATC+AGG | 0.485469 | 3.4:+85625156 | None:intergenic |
| GTTGATTTGTTATTTCATCA+AGG | 0.487404 | 3.4:+85626637 | MS.gene013435:CDS |
| TTTCCTCCACATAAGTCAGT+TGG | 0.491297 | 3.4:-85625427 | None:intergenic |
| TTTCTTGATCGTACTGACTC+TGG | 0.497017 | 3.4:-85625395 | None:intergenic |
| ATAGGTCAAGGAAGCTTTGG+AGG | 0.505259 | 3.4:+85626457 | MS.gene013435:intron |
| ATAGAGATGGTGATAATATG+AGG | 0.515278 | 3.4:+85626689 | MS.gene013435:CDS |
| ATTGTCAACAAAGTTTGCAT+TGG | 0.523622 | 3.4:-85626767 | None:intergenic |
| TGGCGGTGTTGGTGCTATGT+TGG | 0.535172 | 3.4:+85625826 | MS.gene013435:CDS |
| TGTGCAGTTGTATTTGGTCC+AGG | 0.539751 | 3.4:+85625302 | MS.gene013435:CDS |
| CATCGGCAGTGGCAGAGAGG+GGG | 0.541750 | 3.4:-85625669 | None:intergenic |
| AGTAGCATGGAGATAACATC+AGG | 0.542693 | 3.4:+85625974 | MS.gene013435:CDS |
| TCATGGTTGAGATCAGGAAA+AGG | 0.542864 | 3.4:+85625162 | None:intergenic |
| GTAGCGAATCTTTCTTTGAG+TGG | 0.550195 | 3.4:-85625213 | None:intergenic |
| CGCTACGTGAACAGAGTGAA+AGG | 0.557937 | 3.4:+85625230 | MS.gene013435:CDS |
| ATTGTTCACTAAAATGGAGC+AGG | 0.561588 | 3.4:+85625253 | MS.gene013435:CDS |
| ATCGGCAGTGGCAGAGAGGG+GGG | 0.565993 | 3.4:-85625668 | None:intergenic |
| ATTCGTAGCCAAAACAACAT+TGG | 0.568395 | 3.4:+85626712 | MS.gene013435:CDS |
| ACATCGGCAGTGGCAGAGAG+GGG | 0.572548 | 3.4:-85625670 | None:intergenic |
| CCAACACCGCCACCACCACT+AGG | 0.584109 | 3.4:-85625815 | None:intergenic |
| AACTTTGTTGACAATAACGA+TGG | 0.584315 | 3.4:+85626775 | MS.gene013435:CDS |
| GACGAACCAACTGACTTATG+TGG | 0.588916 | 3.4:+85625421 | MS.gene013435:CDS |
| AAATCTTGATGAATATGGCA+TGG | 0.593745 | 3.4:+85626738 | MS.gene013435:CDS |
| AAAGCACATGACATCGGCAG+TGG | 0.598200 | 3.4:-85625680 | None:intergenic |
| AAAATATTGGAAGCAACATG+TGG | 0.603782 | 3.4:+85626260 | MS.gene013435:CDS |
| TGCTTGGCCAAATCTAACAA+TGG | 0.608791 | 3.4:-85625764 | None:intergenic |
| GTAGATAACATGCCTCCTCA+AGG | 0.611282 | 3.4:+85626115 | MS.gene013435:CDS |
| CAAGCTGATCAAATGAGTGA+TGG | 0.615984 | 3.4:+85625785 | MS.gene013435:CDS |
| ACTGAGGGTCTTGAATCACC+TGG | 0.617132 | 3.4:-85625320 | None:intergenic |
| CACATGCTTCAATACCACAC+AGG | 0.617665 | 3.4:-85625283 | None:intergenic |
| GACATGGAGGTATCACTGCA+TGG | 0.617708 | 3.4:+85626598 | MS.gene013435:CDS |
| ATACCGCCGCATGTAAGTCA+TGG | 0.618320 | 3.4:+85626085 | MS.gene013435:CDS |
| CCTCATGCAAATCGTAGTGG+TGG | 0.618609 | 3.4:+85626517 | MS.gene013435:CDS |
| TCATGAGATGGCCACACTGA+GGG | 0.621251 | 3.4:-85625335 | None:intergenic |
| TAACAATATTTACAGCAACA+TGG | 0.622242 | 3.4:+85625877 | MS.gene013435:CDS |
| TAACAATGTAGGCAACGACA+TGG | 0.622250 | 3.4:+85626582 | MS.gene013435:CDS |
| TTTAATCCTAGTGGTGGTGG+CGG | 0.627901 | 3.4:+85625809 | MS.gene013435:CDS |
| CCTCCAAAATCGCCTTGAGG+AGG | 0.629694 | 3.4:-85626127 | None:intergenic |
| GATGATATGTTATTCCCTAG+AGG | 0.633514 | 3.4:+85626019 | MS.gene013435:CDS |
| GAACCTGTGAAATTCCATTG+AGG | 0.637565 | 3.4:-85626556 | None:intergenic |
| TGACATCGGCAGTGGCAGAG+AGG | 0.641912 | 3.4:-85625672 | None:intergenic |
| TATATTTGTTGATCTTGGCG+AGG | 0.646504 | 3.4:-85625472 | None:intergenic |
| AACGCATCAACATCACTACT+GGG | 0.649454 | 3.4:-85626301 | None:intergenic |
| ACATGCTTCAATACCACACA+GGG | 0.652435 | 3.4:-85625282 | None:intergenic |
| AGTGTGGCCATCTCATGATG+TGG | 0.654651 | 3.4:+85625340 | MS.gene013435:CDS |
| TTGTCTAAAGCACATGACAT+CGG | 0.658558 | 3.4:-85625686 | None:intergenic |
| TTCCCTAGAGGAAATTCGGG+GGG | 0.658559 | 3.4:+85626031 | MS.gene013435:CDS |
| CGTAGCCAAAACAACATTGG+GGG | 0.666330 | 3.4:+85626715 | MS.gene013435:CDS |
| CCACCACCAAAATATGTGTG+TGG | 0.667305 | 3.4:-85625908 | None:intergenic |
| GAACCAACTGACTTATGTGG+AGG | 0.672923 | 3.4:+85625424 | MS.gene013435:CDS |
| AAACCTCCAAAATCGCCTTG+AGG | 0.673422 | 3.4:-85626130 | None:intergenic |
| CCACCAAAATATGTGTGTGG+CGG | 0.676512 | 3.4:-85625905 | None:intergenic |
| TGACCTCTAAAACTAAACTG+AGG | 0.679604 | 3.4:-85626214 | None:intergenic |
| TCGTAGCCAAAACAACATTG+GGG | 0.682214 | 3.4:+85626714 | MS.gene013435:CDS |
| TCACCTCATGCAAATCGTAG+TGG | 0.690515 | 3.4:+85626514 | MS.gene013435:CDS |
| TACCTATCTAGGTAGCAACA+TGG | 0.698196 | 3.4:+85626060 | MS.gene013435:CDS |
| CCACCACTACGATTTGCATG+AGG | 0.708156 | 3.4:-85626517 | None:intergenic |
| ATCATGAGATGGCCACACTG+AGG | 0.712363 | 3.4:-85625336 | None:intergenic |
| ACATCGCCATGACTTACATG+CGG | 0.715191 | 3.4:-85626091 | None:intergenic |
| TCGCCATGACTTACATGCGG+CGG | 0.715340 | 3.4:-85626088 | None:intergenic |
| TATTCCCTAGAGGAAATTCG+GGG | 0.717198 | 3.4:+85626029 | MS.gene013435:CDS |
| ACATCAGGTAAATATCTCAG+TGG | 0.722619 | 3.4:+85625989 | MS.gene013435:CDS |
| ATTCCCTAGAGGAAATTCGG+GGG | 0.724819 | 3.4:+85626030 | MS.gene013435:CDS |
| GTGATTCAAGACCCTCAGTG+TGG | 0.727963 | 3.4:+85625324 | MS.gene013435:CDS |
| CAATGTAGGCAACGACATGG+AGG | 0.748862 | 3.4:+85626585 | MS.gene013435:CDS |
| GAGCAGGTGAAAACCCTGTG+TGG | 0.782460 | 3.4:+85625269 | MS.gene013435:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTGTATTAGTTTTT+TGG | - | chr3.4:85625366-85625385 | None:intergenic | 10.0% |
| !!! | GAAAGTTTTGATAAAAATAT+TGG | + | chr3.4:85626247-85626266 | MS.gene013435:CDS | 15.0% |
| !!! | TTCATTATATTTGTTGATCT+TGG | - | chr3.4:85625480-85625499 | None:intergenic | 20.0% |
| !!! | TTGATTTTTACACAAAATTC+TGG | + | chr3.4:85626322-85626341 | MS.gene013435:CDS | 20.0% |
| ! | AGTATGAAAAACAACTTGAT+TGG | + | chr3.4:85625569-85625588 | MS.gene013435:CDS | 25.0% |
| ! | GATAACAAAAATCATAGAGA+TGG | + | chr3.4:85626676-85626695 | MS.gene013435:CDS | 25.0% |
| ! | TAACAATATTTACAGCAACA+TGG | + | chr3.4:85625877-85625896 | MS.gene013435:CDS | 25.0% |
| !! | AATGACAATATGGTAGATTT+TGG | + | chr3.4:85625707-85625726 | MS.gene013435:CDS | 25.0% |
| !! | ATGACAATATGGTAGATTTT+GGG | + | chr3.4:85625708-85625727 | MS.gene013435:CDS | 25.0% |
| !! | ATGCATCAAATTTTAAACGA+AGG | + | chr3.4:85625521-85625540 | MS.gene013435:CDS | 25.0% |
| !! | ATTTTTACACAAAATTCTGG+AGG | + | chr3.4:85626325-85626344 | MS.gene013435:CDS | 25.0% |
| !! | GTTAATCAAGAGAATTTTGA+AGG | + | chr3.4:85625848-85625867 | MS.gene013435:CDS | 25.0% |
| !! | TTCGTTTAAAATTTGATGCA+TGG | - | chr3.4:85625522-85625541 | None:intergenic | 25.0% |
| !!! | GTTGATTTGTTATTTCATCA+AGG | + | chr3.4:85626637-85626656 | MS.gene013435:CDS | 25.0% |
| AAAATATTGGAAGCAACATG+TGG | + | chr3.4:85626260-85626279 | MS.gene013435:CDS | 30.0% | |
| AAATCTTGATGAATATGGCA+TGG | + | chr3.4:85626738-85626757 | MS.gene013435:CDS | 30.0% | |
| AACTTTGTTGACAATAACGA+TGG | + | chr3.4:85626775-85626794 | MS.gene013435:CDS | 30.0% | |
| ATAGAGATGGTGATAATATG+AGG | + | chr3.4:85626689-85626708 | MS.gene013435:CDS | 30.0% | |
| ATTCCTAATGTCGAAACAAT+AGG | + | chr3.4:85626439-85626458 | MS.gene013435:intron | 30.0% | |
| ATTGTCAACAAAGTTTGCAT+TGG | - | chr3.4:85626770-85626789 | None:intergenic | 30.0% | |
| GAAAGGATTGTTCACTAAAA+TGG | + | chr3.4:85625247-85625266 | MS.gene013435:CDS | 30.0% | |
| TAACAACACAGATAGCAAAA+TGG | + | chr3.4:85626486-85626505 | MS.gene013435:CDS | 30.0% | |
| ! | CACTGCCTTTTCAAAATAAT+CGG | - | chr3.4:85625633-85625652 | None:intergenic | 30.0% |
| ! | TGCTTTAGACAATGACAATA+TGG | + | chr3.4:85625697-85625716 | MS.gene013435:CDS | 30.0% |
| ! | TTGCTACTAGAATTTTCATG+TGG | - | chr3.4:85626178-85626197 | None:intergenic | 30.0% |
| !!! | GAGAACCGATTATTTTGAAA+AGG | + | chr3.4:85625625-85625644 | MS.gene013435:CDS | 30.0% |
| !!! | TTTCCTCAGTTTAGTTTTAG+AGG | + | chr3.4:85626211-85626230 | MS.gene013435:CDS | 30.0% |
| AATGTCGAAACAATAGGTCA+AGG | + | chr3.4:85626445-85626464 | MS.gene013435:intron | 35.0% | |
| ACATCAGGTAAATATCTCAG+TGG | + | chr3.4:85625989-85626008 | MS.gene013435:CDS | 35.0% | |
| ATTCGTAGCCAAAACAACAT+TGG | + | chr3.4:85626712-85626731 | MS.gene013435:CDS | 35.0% | |
| ATTGTTCACTAAAATGGAGC+AGG | + | chr3.4:85625253-85625272 | MS.gene013435:CDS | 35.0% | |
| CCAAATCTAACAATGGTTGT+TGG | - | chr3.4:85625760-85625779 | None:intergenic | 35.0% | |
| CCAACAACCATTGTTAGATT+TGG | + | chr3.4:85625757-85625776 | MS.gene013435:CDS | 35.0% | |
| GATGATATGTTATTCCCTAG+AGG | + | chr3.4:85626019-85626038 | MS.gene013435:CDS | 35.0% | |
| GTTATTCCCTAGAGGAAATT+CGG | + | chr3.4:85626027-85626046 | MS.gene013435:CDS | 35.0% | |
| TGACCTATTGTTTCGACATT+AGG | - | chr3.4:85626445-85626464 | None:intergenic | 35.0% | |
| TTATTCCCTAGAGGAAATTC+GGG | + | chr3.4:85626028-85626047 | MS.gene013435:CDS | 35.0% | |
| TTCGTAGCCAAAACAACATT+GGG | + | chr3.4:85626713-85626732 | MS.gene013435:CDS | 35.0% | |
| TTTCATCAAGGCAATGTTGA+AGG | + | chr3.4:85626649-85626668 | MS.gene013435:CDS | 35.0% | |
| ! | ACAGGTTCTGATAACAATGT+AGG | + | chr3.4:85626571-85626590 | MS.gene013435:CDS | 35.0% |
| ! | AGTGGCATTTTCAATCAACT+TGG | - | chr3.4:85625198-85625217 | None:intergenic | 35.0% |
| ! | CTACTAGAATTTTCATGTGG+TGG | - | chr3.4:85626175-85626194 | None:intergenic | 35.0% |
| ! | GAGGTTTTTATCATCACATG+TGG | + | chr3.4:85626146-85626165 | MS.gene013435:CDS | 35.0% |
| ! | TATATTTGTTGATCTTGGCG+AGG | - | chr3.4:85625475-85625494 | None:intergenic | 35.0% |
| ! | TTGTCTAAAGCACATGACAT+CGG | - | chr3.4:85625689-85625708 | None:intergenic | 35.0% |
| !! | GGAAGATTTTGATAGTAGCA+TGG | + | chr3.4:85625961-85625980 | MS.gene013435:CDS | 35.0% |
| !! | TGACCTCTAAAACTAAACTG+AGG | - | chr3.4:85626217-85626236 | None:intergenic | 35.0% |
| !!! | AGTGATGGTTTTAATCCTAG+TGG | + | chr3.4:85625800-85625819 | MS.gene013435:CDS | 35.0% |
| AACGCATCAACATCACTACT+GGG | - | chr3.4:85626304-85626323 | None:intergenic | 40.0% | |
| ACAATAGGTCAAGGAAGCTT+TGG | + | chr3.4:85626454-85626473 | MS.gene013435:intron | 40.0% | |
| ACATGCTTCAATACCACACA+GGG | - | chr3.4:85625285-85625304 | None:intergenic | 40.0% | |
| AGTAGCATGGAGATAACATC+AGG | + | chr3.4:85625974-85625993 | MS.gene013435:CDS | 40.0% | |
| CAAGCTGATCAAATGAGTGA+TGG | + | chr3.4:85625785-85625804 | MS.gene013435:CDS | 40.0% | |
| CCATCACATGAAAATCCAAG+TGG | + | chr3.4:85626400-85626419 | MS.gene013435:intron | 40.0% | |
| CTGACTTATGTGGAGGAAAA+AGG | + | chr3.4:85625431-85625450 | MS.gene013435:CDS | 40.0% | |
| CTTCCTCAATGGAATTTCAC+AGG | + | chr3.4:85626553-85626572 | MS.gene013435:CDS | 40.0% | |
| GAACCTGTGAAATTCCATTG+AGG | - | chr3.4:85626559-85626578 | None:intergenic | 40.0% | |
| GAAGCATGTGCAGTTGTATT+TGG | + | chr3.4:85625296-85625315 | MS.gene013435:CDS | 40.0% | |
| GGAGGTTAATGCAACTTTGA+AGG | + | chr3.4:85626343-85626362 | MS.gene013435:intron | 40.0% | |
| GGGGGAAATCTTGATGAATA+TGG | + | chr3.4:85626733-85626752 | MS.gene013435:CDS | 40.0% | |
| GTAGCGAATCTTTCTTTGAG+TGG | - | chr3.4:85625216-85625235 | None:intergenic | 40.0% | |
| TAACAATGTAGGCAACGACA+TGG | + | chr3.4:85626582-85626601 | MS.gene013435:CDS | 40.0% | |
| TACCTATCTAGGTAGCAACA+TGG | + | chr3.4:85626060-85626079 | MS.gene013435:CDS | 40.0% | |
| TATTCCCTAGAGGAAATTCG+GGG | + | chr3.4:85626029-85626048 | MS.gene013435:CDS | 40.0% | |
| TCACATGAAAATCCAAGTGG+CGG | + | chr3.4:85626403-85626422 | MS.gene013435:intron | 40.0% | |
| TCGTAGCCAAAACAACATTG+GGG | + | chr3.4:85626714-85626733 | MS.gene013435:CDS | 40.0% | |
| TGCTTGGCCAAATCTAACAA+TGG | - | chr3.4:85625767-85625786 | None:intergenic | 40.0% | |
| TTGATGCTTTGCTTCCTCAA+TGG | + | chr3.4:85626542-85626561 | MS.gene013435:CDS | 40.0% | |
| TTTCCTCCACATAAGTCAGT+TGG | - | chr3.4:85625430-85625449 | None:intergenic | 40.0% | |
| ! | ACTCATTTGATCAGCTTGCT+TGG | - | chr3.4:85625783-85625802 | None:intergenic | 40.0% |
| ! | ATACCGCCACACACATATTT+TGG | + | chr3.4:85625902-85625921 | MS.gene013435:CDS | 40.0% |
| ! | CCACTTGGATTTTCATGTGA+TGG | - | chr3.4:85626403-85626422 | None:intergenic | 40.0% |
| ! | CTACTGGGATTTTCATGTGA+TGG | - | chr3.4:85626289-85626308 | None:intergenic | 40.0% |
| ! | GGCATTTTCTCAAGGCAATA+TGG | + | chr3.4:85625940-85625959 | MS.gene013435:CDS | 40.0% |
| ! | GTTGATGTGGCATTTTCTCA+AGG | + | chr3.4:85625932-85625951 | MS.gene013435:CDS | 40.0% |
| !! | GATTTCCCCCAATGTTGTTT+TGG | - | chr3.4:85626723-85626742 | None:intergenic | 40.0% |
| !! | TTTCTTGATCGTACTGACTC+TGG | - | chr3.4:85625398-85625417 | None:intergenic | 40.0% |
| !! | TTTTTGGCCACATCATGAGA+TGG | - | chr3.4:85625350-85625369 | None:intergenic | 40.0% |
| !!! | GATGGTTTTAATCCTAGTGG+TGG | + | chr3.4:85625803-85625822 | MS.gene013435:CDS | 40.0% |
| AAACCTCCAAAATCGCCTTG+AGG | - | chr3.4:85626133-85626152 | None:intergenic | 45.0% | |
| ACATCGCCATGACTTACATG+CGG | - | chr3.4:85626094-85626113 | None:intergenic | 45.0% | |
| ACATTACGTGTCGCAACATG+TGG | + | chr3.4:85626374-85626393 | MS.gene013435:intron | 45.0% | |
| AGAGAGGGGGGTTTATTAAG+AGG | - | chr3.4:85625659-85625678 | None:intergenic | 45.0% | |
| ATTCCCTAGAGGAAATTCGG+GGG | + | chr3.4:85626030-85626049 | MS.gene013435:CDS | 45.0% | |
| CAACGCATCAACATCACTAC+TGG | - | chr3.4:85626305-85626324 | None:intergenic | 45.0% | |
| CACATGCTTCAATACCACAC+AGG | - | chr3.4:85625286-85625305 | None:intergenic | 45.0% | |
| CCACCAAAATATGTGTGTGG+CGG | - | chr3.4:85625908-85625927 | None:intergenic | 45.0% | |
| CCACCACCAAAATATGTGTG+TGG | - | chr3.4:85625911-85625930 | None:intergenic | 45.0% | |
| CGTAGCCAAAACAACATTGG+GGG | + | chr3.4:85626715-85626734 | MS.gene013435:CDS | 45.0% | |
| CTCCATGTTGCTACCTAGAT+AGG | - | chr3.4:85626065-85626084 | None:intergenic | 45.0% | |
| GTAGATAACATGCCTCCTCA+AGG | + | chr3.4:85626115-85626134 | MS.gene013435:CDS | 45.0% | |
| TCACCTCATGCAAATCGTAG+TGG | + | chr3.4:85626514-85626533 | MS.gene013435:CDS | 45.0% | |
| TGTGCAGTTGTATTTGGTCC+AGG | + | chr3.4:85625302-85625321 | MS.gene013435:CDS | 45.0% | |
| ! | ATAGGTCAAGGAAGCTTTGG+AGG | + | chr3.4:85626457-85626476 | MS.gene013435:intron | 45.0% |
| ! | GAACCAACTGACTTATGTGG+AGG | + | chr3.4:85625424-85625443 | MS.gene013435:CDS | 45.0% |
| ! | GACGAACCAACTGACTTATG+TGG | + | chr3.4:85625421-85625440 | MS.gene013435:CDS | 45.0% |
| ! | GGGGGTTCTAATACCTATCT+AGG | + | chr3.4:85626049-85626068 | MS.gene013435:CDS | 45.0% |
| !! | GGTTTTAATCCTAGTGGTGG+TGG | + | chr3.4:85625806-85625825 | MS.gene013435:CDS | 45.0% |
| !! | TTTAATCCTAGTGGTGGTGG+CGG | + | chr3.4:85625809-85625828 | MS.gene013435:CDS | 45.0% |
| !!! | CCACACACATATTTTGGTGG+TGG | + | chr3.4:85625908-85625927 | MS.gene013435:CDS | 45.0% |
| !!! | TTTTGGTGGTGGTGTTGATG+TGG | + | chr3.4:85625919-85625938 | MS.gene013435:CDS | 45.0% |
| AAAGCACATGACATCGGCAG+TGG | - | chr3.4:85625683-85625702 | None:intergenic | 50.0% | |
| AACATGTCAACACCGCCACT+TGG | - | chr3.4:85626418-85626437 | None:intergenic | 50.0% | |
| AACCCCCCGAATTTCCTCTA+GGG | - | chr3.4:85626036-85626055 | None:intergenic | 50.0% | |
| ACTGAGGGTCTTGAATCACC+TGG | - | chr3.4:85625323-85625342 | None:intergenic | 50.0% | |
| AGTGTGGCCATCTCATGATG+TGG | + | chr3.4:85625340-85625359 | MS.gene013435:CDS | 50.0% | |
| ATACCGCCGCATGTAAGTCA+TGG | + | chr3.4:85626085-85626104 | MS.gene013435:CDS | 50.0% | |
| ATCATGAGATGGCCACACTG+AGG | - | chr3.4:85625339-85625358 | None:intergenic | 50.0% | |
| CAATGTAGGCAACGACATGG+AGG | + | chr3.4:85626585-85626604 | MS.gene013435:CDS | 50.0% | |
| CCACCACTACGATTTGCATG+AGG | - | chr3.4:85626520-85626539 | None:intergenic | 50.0% | |
| CCTCATGCAAATCGTAGTGG+TGG | + | chr3.4:85626517-85626536 | MS.gene013435:CDS | 50.0% | |
| CGCTACGTGAACAGAGTGAA+AGG | + | chr3.4:85625230-85625249 | MS.gene013435:CDS | 50.0% | |
| GTGATTCAAGACCCTCAGTG+TGG | + | chr3.4:85625324-85625343 | MS.gene013435:CDS | 50.0% | |
| TCATGAGATGGCCACACTGA+GGG | - | chr3.4:85625338-85625357 | None:intergenic | 50.0% | |
| TTCCCTAGAGGAAATTCGGG+GGG | + | chr3.4:85626031-85626050 | MS.gene013435:CDS | 50.0% | |
| ! | ATGCCTCCTCAAGGCGATTT+TGG | + | chr3.4:85626124-85626143 | MS.gene013435:CDS | 50.0% |
| !! | CCGCCACACACATATTTTGG+TGG | + | chr3.4:85625905-85625924 | MS.gene013435:CDS | 50.0% |
| !! | GACATGGAGGTATCACTGCA+TGG | + | chr3.4:85626598-85626617 | MS.gene013435:CDS | 50.0% |
| CCTCCAAAATCGCCTTGAGG+AGG | - | chr3.4:85626130-85626149 | None:intergenic | 55.0% | |
| GAACCCCCCGAATTTCCTCT+AGG | - | chr3.4:85626037-85626056 | None:intergenic | 55.0% | |
| GAGCAGGTGAAAACCCTGTG+TGG | + | chr3.4:85625269-85625288 | MS.gene013435:CDS | 55.0% | |
| TCGCCATGACTTACATGCGG+CGG | - | chr3.4:85626091-85626110 | None:intergenic | 55.0% | |
| ! | CCTCCTCAAGGCGATTTTGG+AGG | + | chr3.4:85626127-85626146 | MS.gene013435:CDS | 55.0% |
| !! | TGGCGGTGTTGGTGCTATGT+TGG | + | chr3.4:85625826-85625845 | MS.gene013435:CDS | 55.0% |
| ACATCGGCAGTGGCAGAGAG+GGG | - | chr3.4:85625673-85625692 | None:intergenic | 60.0% | |
| GACATCGGCAGTGGCAGAGA+GGG | - | chr3.4:85625674-85625693 | None:intergenic | 60.0% | |
| TGACATCGGCAGTGGCAGAG+AGG | - | chr3.4:85625675-85625694 | None:intergenic | 60.0% | |
| ATCGGCAGTGGCAGAGAGGG+GGG | - | chr3.4:85625671-85625690 | None:intergenic | 65.0% | |
| CATCGGCAGTGGCAGAGAGG+GGG | - | chr3.4:85625672-85625691 | None:intergenic | 65.0% | |
| CCAACACCGCCACCACCACT+AGG | - | chr3.4:85625818-85625837 | None:intergenic | 65.0% | |
| !! | CCTAGTGGTGGTGGCGGTGT+TGG | + | chr3.4:85625815-85625834 | MS.gene013435:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 85625164 | 85626813 | 85625164 | ID=MS.gene013435 |
| chr3.4 | mRNA | 85625164 | 85626813 | 85625164 | ID=MS.gene013435.t1;Parent=MS.gene013435 |
| chr3.4 | exon | 85625164 | 85626346 | 85625164 | ID=MS.gene013435.t1.exon1;Parent=MS.gene013435.t1 |
| chr3.4 | CDS | 85625164 | 85626346 | 85625164 | ID=cds.MS.gene013435.t1;Parent=MS.gene013435.t1 |
| chr3.4 | exon | 85626461 | 85626813 | 85626461 | ID=MS.gene013435.t1.exon2;Parent=MS.gene013435.t1 |
| chr3.4 | CDS | 85626461 | 85626813 | 85626461 | ID=cds.MS.gene013435.t1;Parent=MS.gene013435.t1 |
| Gene Sequence |
| Protein sequence |
