Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013439.t1 | XP_013461494.1 | 93.5 | 324 | 7 | 3 | 1 | 324 | 1 | 310 | 5.40E-161 | 577 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013439.t1 | Q9LY00 | 37.2 | 301 | 155 | 9 | 13 | 297 | 7 | 289 | 4.2e-37 | 156.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013439.t1 | A0A072V0I2 | 93.5 | 324 | 7 | 3 | 1 | 324 | 1 | 310 | 3.9e-161 | 577.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013439.t1 | TF | WRKY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013439.t1 | MTR_3g093830 | 93.519 | 324 | 7 | 3 | 1 | 324 | 1 | 310 | 0.0 | 605 |
| MS.gene013439.t1 | MTR_5g067700 | 40.741 | 297 | 97 | 12 | 5 | 289 | 5 | 234 | 5.45e-53 | 174 |
| MS.gene013439.t1 | MTR_7g073380 | 39.000 | 200 | 93 | 5 | 17 | 210 | 15 | 191 | 5.58e-38 | 137 |
| MS.gene013439.t1 | MTR_7g073430 | 37.915 | 211 | 100 | 7 | 7 | 210 | 4 | 190 | 2.24e-35 | 130 |
| MS.gene013439.t1 | MTR_0002s1250 | 38.806 | 201 | 99 | 6 | 18 | 216 | 8 | 186 | 1.27e-34 | 127 |
| MS.gene013439.t1 | MTR_8g005750 | 38.571 | 210 | 97 | 6 | 18 | 226 | 6 | 184 | 3.66e-31 | 118 |
| MS.gene013439.t1 | MTR_3g090860 | 33.190 | 232 | 123 | 9 | 15 | 229 | 5 | 221 | 1.20e-24 | 102 |
| MS.gene013439.t1 | MTR_2g075680 | 32.819 | 259 | 132 | 10 | 14 | 256 | 13 | 245 | 1.35e-24 | 101 |
| MS.gene013439.t1 | MTR_2g075690 | 33.772 | 228 | 125 | 7 | 3 | 222 | 5 | 214 | 2.43e-24 | 100 |
| MS.gene013439.t1 | MTR_2g075700 | 34.783 | 230 | 115 | 8 | 9 | 222 | 7 | 217 | 4.48e-23 | 97.4 |
| MS.gene013439.t1 | MTR_8g032510 | 34.091 | 220 | 107 | 9 | 18 | 226 | 9 | 201 | 6.72e-23 | 96.7 |
| MS.gene013439.t1 | MTR_7g117200 | 30.097 | 206 | 126 | 4 | 7 | 212 | 2 | 189 | 3.13e-21 | 92.8 |
| MS.gene013439.t1 | MTR_8g027860 | 56.716 | 67 | 29 | 0 | 134 | 200 | 129 | 195 | 1.71e-20 | 90.9 |
| MS.gene013439.t1 | MTR_8g099350 | 33.679 | 193 | 106 | 6 | 17 | 200 | 12 | 191 | 6.82e-20 | 89.4 |
| MS.gene013439.t1 | MTR_2g075750 | 42.529 | 87 | 49 | 1 | 140 | 226 | 27 | 112 | 3.46e-19 | 84.0 |
| MS.gene013439.t1 | MTR_2g075610 | 50.794 | 63 | 31 | 0 | 142 | 204 | 30 | 92 | 1.49e-18 | 82.4 |
| MS.gene013439.t1 | MTR_5g067680 | 35.938 | 128 | 75 | 1 | 87 | 207 | 141 | 268 | 3.33e-18 | 84.7 |
| MS.gene013439.t1 | MTR_5g073620 | 39.706 | 68 | 41 | 0 | 142 | 209 | 673 | 740 | 1.14e-12 | 69.3 |
| MS.gene013439.t1 | MTR_7g028415 | 46.377 | 69 | 33 | 2 | 131 | 199 | 84 | 148 | 3.98e-12 | 64.3 |
| MS.gene013439.t1 | MTR_7g028710 | 46.377 | 69 | 33 | 2 | 131 | 199 | 84 | 148 | 3.98e-12 | 64.3 |
| MS.gene013439.t1 | MTR_4g127040 | 40.000 | 90 | 44 | 2 | 125 | 206 | 221 | 308 | 6.41e-12 | 65.9 |
| MS.gene013439.t1 | MTR_7g079010 | 34.579 | 107 | 58 | 3 | 102 | 206 | 109 | 205 | 7.40e-12 | 64.3 |
| MS.gene013439.t1 | MTR_8g098945 | 46.154 | 65 | 33 | 1 | 134 | 198 | 122 | 184 | 7.94e-12 | 65.1 |
| MS.gene013439.t1 | MTR_8g028565 | 41.026 | 78 | 41 | 2 | 125 | 199 | 136 | 211 | 1.24e-11 | 65.1 |
| MS.gene013439.t1 | MTR_1g009613 | 38.462 | 91 | 44 | 3 | 125 | 205 | 238 | 326 | 1.48e-11 | 64.7 |
| MS.gene013439.t1 | MTR_5g043880 | 38.372 | 86 | 49 | 2 | 142 | 227 | 125 | 206 | 2.00e-11 | 63.9 |
| MS.gene013439.t1 | MTR_8g096730 | 32.110 | 109 | 64 | 3 | 90 | 198 | 26 | 124 | 7.33e-11 | 60.1 |
| MS.gene013439.t1 | MTR_7g062220 | 52.632 | 57 | 24 | 1 | 142 | 198 | 125 | 178 | 8.71e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013439.t1 | AT3G56400 | 44.144 | 222 | 106 | 5 | 13 | 234 | 7 | 210 | 1.43e-50 | 170 |
| MS.gene013439.t1 | AT2G40750 | 34.259 | 324 | 185 | 7 | 10 | 310 | 8 | 326 | 1.92e-46 | 160 |
| MS.gene013439.t1 | AT5G24110 | 34.715 | 193 | 89 | 7 | 13 | 200 | 12 | 172 | 6.29e-23 | 97.1 |
| MS.gene013439.t1 | AT2G46400 | 30.357 | 224 | 102 | 5 | 13 | 226 | 4 | 183 | 8.96e-22 | 93.6 |
| MS.gene013439.t1 | AT4G11070 | 31.280 | 211 | 121 | 7 | 13 | 208 | 7 | 208 | 1.13e-21 | 94.0 |
| MS.gene013439.t1 | AT1G66550 | 34.054 | 185 | 97 | 4 | 18 | 202 | 10 | 169 | 2.68e-21 | 91.7 |
| MS.gene013439.t1 | AT1G66550 | 34.595 | 185 | 91 | 6 | 18 | 202 | 10 | 164 | 6.19e-21 | 90.5 |
| MS.gene013439.t1 | AT1G66560 | 27.642 | 246 | 140 | 6 | 11 | 250 | 3 | 216 | 6.81e-20 | 87.8 |
| MS.gene013439.t1 | AT5G22570 | 28.704 | 216 | 114 | 4 | 18 | 217 | 11 | 202 | 7.38e-20 | 88.2 |
| MS.gene013439.t1 | AT1G66600 | 29.752 | 242 | 136 | 5 | 18 | 259 | 10 | 217 | 9.26e-20 | 87.0 |
| MS.gene013439.t1 | AT5G01900 | 32.973 | 185 | 100 | 4 | 18 | 201 | 9 | 170 | 3.08e-19 | 86.3 |
| MS.gene013439.t1 | AT4G11070 | 29.126 | 206 | 100 | 6 | 13 | 208 | 7 | 176 | 1.18e-18 | 84.7 |
| MS.gene013439.t1 | AT2G40740 | 44.186 | 86 | 42 | 1 | 142 | 221 | 174 | 259 | 2.34e-18 | 84.3 |
| MS.gene013439.t1 | AT2G40740 | 44.186 | 86 | 42 | 1 | 142 | 221 | 183 | 268 | 3.10e-18 | 84.0 |
| MS.gene013439.t1 | AT4G23810 | 50.704 | 71 | 34 | 1 | 142 | 211 | 159 | 229 | 5.23e-18 | 83.6 |
| MS.gene013439.t1 | AT5G45260 | 35.714 | 154 | 92 | 4 | 47 | 198 | 1117 | 1265 | 2.97e-16 | 80.1 |
| MS.gene013439.t1 | AT1G80590 | 32.432 | 185 | 77 | 5 | 18 | 202 | 10 | 146 | 1.13e-14 | 72.8 |
| MS.gene013439.t1 | AT4G23550 | 49.153 | 59 | 28 | 1 | 140 | 198 | 139 | 195 | 7.10e-12 | 65.9 |
| MS.gene013439.t1 | AT5G52830 | 41.772 | 79 | 40 | 2 | 125 | 199 | 145 | 221 | 7.21e-12 | 65.9 |
| MS.gene013439.t1 | AT5G13080 | 43.243 | 74 | 38 | 2 | 126 | 199 | 53 | 122 | 2.48e-11 | 61.2 |
| MS.gene013439.t1 | AT2G46130 | 42.029 | 69 | 35 | 2 | 140 | 206 | 29 | 94 | 2.55e-11 | 60.5 |
| MS.gene013439.t1 | AT4G01250 | 38.961 | 77 | 42 | 3 | 125 | 198 | 109 | 183 | 5.63e-11 | 62.8 |
| MS.gene013439.t1 | AT1G69310 | 30.216 | 139 | 78 | 5 | 96 | 229 | 97 | 221 | 8.36e-11 | 62.4 |
| MS.gene013439.t1 | AT1G69310 | 30.216 | 139 | 78 | 5 | 96 | 229 | 97 | 221 | 8.36e-11 | 62.4 |
| MS.gene013439.t1 | AT1G69310 | 30.216 | 139 | 78 | 5 | 96 | 229 | 97 | 221 | 8.36e-11 | 62.4 |
| MS.gene013439.t1 | AT1G30650 | 36.364 | 99 | 48 | 3 | 120 | 205 | 183 | 279 | 9.71e-11 | 62.8 |
Find 61 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATCTTGAAATTGATTT+TGG | 0.027971 | 3.4:+85529474 | MS.gene013439:CDS |
| TATGTAATTTGGTACATTTC+TGG | 0.119421 | 3.4:-85529141 | None:intergenic |
| TTGTTGGCAGTGACAGTTTC+AGG | 0.206708 | 3.4:-85527396 | None:intergenic |
| TGCAACCTTGGTCATGCTTC+CGG | 0.212153 | 3.4:-85529083 | None:intergenic |
| CATTCTCTGAAGATACTAAT+TGG | 0.227820 | 3.4:+85529214 | MS.gene013439:CDS |
| TGATGTTACTGACAACTTAT+TGG | 0.245112 | 3.4:+85529380 | MS.gene013439:CDS |
| GCAACCTTGGTCATGCTTCC+GGG | 0.281835 | 3.4:-85529082 | None:intergenic |
| TTCTATCAATTGTACCTGTT+TGG | 0.295646 | 3.4:-85529112 | None:intergenic |
| TTAAAATCAGACCACAAATT+AGG | 0.299410 | 3.4:-85529405 | None:intergenic |
| CAGAATCATGTGAATCATTC+AGG | 0.322565 | 3.4:+85527612 | MS.gene013439:CDS |
| CATGTGAATCATTCAGGTTC+AGG | 0.330373 | 3.4:+85527618 | MS.gene013439:CDS |
| AGTAGTACTGTCGTCGTTGT+TGG | 0.356608 | 3.4:-85529349 | None:intergenic |
| AAGAATCCTGTTTGTTCTGA+TGG | 0.357623 | 3.4:+85527486 | MS.gene013439:CDS |
| GTCTCCTTCTGTTAAGGAAT+TGG | 0.359709 | 3.4:+85527509 | MS.gene013439:CDS |
| GTTTGGTTGCTTTGCAACCT+TGG | 0.376612 | 3.4:-85529095 | None:intergenic |
| TAATTTGCAGGAGTTACTTC+AGG | 0.382346 | 3.4:+85529055 | MS.gene013439:intron |
| GAAAGCCAATGTATGTAATT+TGG | 0.392701 | 3.4:-85529152 | None:intergenic |
| TCAGAGAATGAGACCATTTG+TGG | 0.397937 | 3.4:-85529201 | None:intergenic |
| TGATGGGTCTCCTTCTGTTA+AGG | 0.399624 | 3.4:+85527503 | MS.gene013439:CDS |
| ACTCATAAAAGAGCTTCTTC+AGG | 0.399737 | 3.4:+85527428 | MS.gene013439:CDS |
| CAATTGGTGACACTCATTCC+TGG | 0.409828 | 3.4:+85527961 | MS.gene013439:CDS |
| ATTCTCTGAAGATACTAATT+GGG | 0.419258 | 3.4:+85529215 | MS.gene013439:CDS |
| GTAGTACTGTCGTCGTTGTT+GGG | 0.426318 | 3.4:-85529348 | None:intergenic |
| CCTCTTCGATCCTTTGTAGT+TGG | 0.426598 | 3.4:-85527723 | None:intergenic |
| ACCATAGTCTCTAAAACAAT+TGG | 0.428053 | 3.4:+85527945 | MS.gene013439:CDS |
| TTCAGGGGAACATGGTTCAT+TGG | 0.430865 | 3.4:+85527635 | MS.gene013439:CDS |
| AGAATCCTGTTTGTTCTGAT+GGG | 0.439454 | 3.4:+85527487 | MS.gene013439:CDS |
| ACCTTGGGAAATTAGAATTG+AGG | 0.441878 | 3.4:-85528007 | None:intergenic |
| TCCTTCTGTTAAGGAATTGG+TGG | 0.442137 | 3.4:+85527512 | MS.gene013439:CDS |
| AGACCATTTGTGGAGTTTGT+AGG | 0.471099 | 3.4:-85529191 | None:intergenic |
| CTTCTGACCGTACTTTCTCC+AGG | 0.478180 | 3.4:-85527979 | None:intergenic |
| ACTTATTGGATCCTAATTTG+TGG | 0.485951 | 3.4:+85529394 | MS.gene013439:CDS |
| CACCCTACAAACTCCACAAA+TGG | 0.486229 | 3.4:+85529188 | MS.gene013439:CDS |
| ATGTGAATCATTCAGGTTCA+GGG | 0.513638 | 3.4:+85527619 | MS.gene013439:CDS |
| CTCATAAAAGAGCTTCTTCA+GGG | 0.513650 | 3.4:+85527429 | MS.gene013439:CDS |
| CATTCAGGTTCAGGGGAACA+TGG | 0.514743 | 3.4:+85527627 | MS.gene013439:CDS |
| GCAGGAATACACAATATCCT+TGG | 0.514816 | 3.4:-85529442 | None:intergenic |
| AGGTTGCAAAGCAACCAAAC+AGG | 0.523803 | 3.4:+85529098 | MS.gene013439:CDS |
| GACCATTTGTGGAGTTTGTA+GGG | 0.524922 | 3.4:-85529190 | None:intergenic |
| AGGGGAACATGGTTCATTGG+TGG | 0.531988 | 3.4:+85527638 | MS.gene013439:CDS |
| GGAGACCCATCAGAACAAAC+AGG | 0.533380 | 3.4:-85527492 | None:intergenic |
| CACATGTTATTAGCTCAGAA+AGG | 0.537868 | 3.4:+85529304 | MS.gene013439:CDS |
| GAAGAGGTTCCTACAAAAGA+AGG | 0.538026 | 3.4:+85527739 | MS.gene013439:CDS |
| GCCACCAATTCCTTAACAGA+AGG | 0.556097 | 3.4:-85527513 | None:intergenic |
| TGAAGATTGTAGTTTAGATG+AGG | 0.565987 | 3.4:+85527584 | MS.gene013439:CDS |
| ATGTACCAAATTACATACAT+TGG | 0.567198 | 3.4:+85529147 | MS.gene013439:CDS |
| CTGGAGAAAGTACGGTCAGA+AGG | 0.567429 | 3.4:+85527980 | MS.gene013439:CDS |
| TCCTCAATTCTAATTTCCCA+AGG | 0.568294 | 3.4:+85528006 | MS.gene013439:CDS |
| GTCAGAACCTCCTTTGAGTG+AGG | 0.572819 | 3.4:-85529261 | None:intergenic |
| GGAGTTACTTCAGGTGCACC+CGG | 0.575709 | 3.4:+85529064 | MS.gene013439:intron |
| ACTCATTCCTGGAGAAAGTA+CGG | 0.586004 | 3.4:+85527972 | MS.gene013439:CDS |
| GAGATTGTCGCCAACTACAA+AGG | 0.592832 | 3.4:+85527713 | MS.gene013439:CDS |
| GAATTCTAATCCTCACTCAA+AGG | 0.633382 | 3.4:+85529251 | MS.gene013439:CDS |
| CATTTGTGGAGTTTGTAGGG+TGG | 0.641904 | 3.4:-85529187 | None:intergenic |
| TTCTAATCCTCACTCAAAGG+AGG | 0.641909 | 3.4:+85529254 | MS.gene013439:CDS |
| TTGTCAGTAACATCACTCCT+CGG | 0.646183 | 3.4:-85529372 | None:intergenic |
| TGTGAATCATTCAGGTTCAG+GGG | 0.655461 | 3.4:+85527620 | MS.gene013439:CDS |
| TGCACCCGGAAGCATGACCA+AGG | 0.656558 | 3.4:+85529078 | MS.gene013439:CDS |
| GCAGGAAAACAGATGAGACA+AGG | 0.694593 | 3.4:+85527922 | MS.gene013439:intron |
| CCAACTACAAAGGATCGAAG+AGG | 0.701163 | 3.4:+85527723 | MS.gene013439:CDS |
| ACGACGACAGTACTACTCCG+AGG | 0.763721 | 3.4:+85529355 | MS.gene013439:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAACTAATTAG+TGG | - | chr3.4:85528880-85528899 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACTAATTAGT+GGG | - | chr3.4:85528879-85528898 | None:intergenic | 10.0% |
| !! | GATATTTATTAAAATTGATT+TGG | + | chr3.4:85528275-85528294 | MS.gene013439:intron | 10.0% |
| !!! | AAATTTTACACTTAAATTTA+TGG | + | chr3.4:85528356-85528375 | MS.gene013439:intron | 10.0% |
| !! | ATATAATCTCATTTCAAAAT+CGG | - | chr3.4:85528835-85528854 | None:intergenic | 15.0% |
| !! | TTAAGTGTAAAATTTACTTT+GGG | - | chr3.4:85528351-85528370 | None:intergenic | 15.0% |
| !! | TTTAAGTGTAAAATTTACTT+TGG | - | chr3.4:85528352-85528371 | None:intergenic | 15.0% |
| !!! | AAAATCTTGAAATTGATTTT+GGG | + | chr3.4:85529475-85529494 | MS.gene013439:CDS | 15.0% |
| !! | AACTATAAAGTCTATACAAA+AGG | - | chr3.4:85528750-85528769 | None:intergenic | 20.0% |
| !! | GAATTGATTAACTAATTAGT+GGG | - | chr3.4:85528916-85528935 | None:intergenic | 20.0% |
| !! | TAAGTGTAAAATTTACTTTG+GGG | - | chr3.4:85528350-85528369 | None:intergenic | 20.0% |
| !! | TAGAAAACAAAAAAATCAAC+AGG | - | chr3.4:85527836-85527855 | None:intergenic | 20.0% |
| !! | TGAATTGATTAACTAATTAG+TGG | - | chr3.4:85528917-85528936 | None:intergenic | 20.0% |
| !! | TTACACTTAAATTTATGGTT+AGG | + | chr3.4:85528361-85528380 | MS.gene013439:intron | 20.0% |
| !! | TTAGATGTGTATAATTGATT+TGG | + | chr3.4:85528240-85528259 | MS.gene013439:intron | 20.0% |
| !! | TTATAGTTTCAACAAAATCA+TGG | + | chr3.4:85528762-85528781 | MS.gene013439:intron | 20.0% |
| !! | TTTATTCTTAATTATTGTGC+AGG | + | chr3.4:85527904-85527923 | MS.gene013439:intron | 20.0% |
| !!! | AAATCTTGAAATTGATTTTG+GGG | + | chr3.4:85529476-85529495 | MS.gene013439:CDS | 20.0% |
| !!! | CAAAATCTTGAAATTGATTT+TGG | + | chr3.4:85529474-85529493 | MS.gene013439:CDS | 20.0% |
| ! | ACTTGCTCATATTGTATAAA+TGG | - | chr3.4:85528108-85528127 | None:intergenic | 25.0% |
| ! | AGGAAAATAATGATTACCTT+GGG | - | chr3.4:85528025-85528044 | None:intergenic | 25.0% |
| ! | ATGTACCAAATTACATACAT+TGG | + | chr3.4:85529147-85529166 | MS.gene013439:CDS | 25.0% |
| ! | TACTAGTATACAAATTAACC+CGG | + | chr3.4:85528953-85528972 | MS.gene013439:intron | 25.0% |
| ! | TATGTAATTTGGTACATTTC+TGG | - | chr3.4:85529144-85529163 | None:intergenic | 25.0% |
| ! | TCAACTCTTACAAAATCAAT+TGG | + | chr3.4:85528452-85528471 | MS.gene013439:intron | 25.0% |
| ! | TGAGATTATATACTATCAAG+TGG | + | chr3.4:85528844-85528863 | MS.gene013439:intron | 25.0% |
| ! | TTAAAATCAGACCACAAATT+AGG | - | chr3.4:85529408-85529427 | None:intergenic | 25.0% |
| !! | AAAATAGTACCTTCTTTTGT+AGG | - | chr3.4:85527751-85527770 | None:intergenic | 25.0% |
| !! | ATTCTCTGAAGATACTAATT+GGG | + | chr3.4:85529215-85529234 | MS.gene013439:CDS | 25.0% |
| !!! | AAGAAGGTACTATTTTTGTA+CGG | + | chr3.4:85527755-85527774 | MS.gene013439:intron | 25.0% |
| !!! | AGATTATAGAAGCATTTTAG+AGG | + | chr3.4:85528212-85528231 | MS.gene013439:intron | 25.0% |
| !!! | TAATTTGTGGTCTGATTTTA+AGG | + | chr3.4:85529407-85529426 | MS.gene013439:CDS | 25.0% |
| AAATCAGTAGAAAAAAGCAG+AGG | - | chr3.4:85528045-85528064 | None:intergenic | 30.0% | |
| ACTAGTATACAAATTAACCC+GGG | + | chr3.4:85528954-85528973 | MS.gene013439:intron | 30.0% | |
| ACTTATTGGATCCTAATTTG+TGG | + | chr3.4:85529394-85529413 | MS.gene013439:CDS | 30.0% | |
| ATGTGCATGTTTCAATATCA+TGG | + | chr3.4:85528501-85528520 | MS.gene013439:intron | 30.0% | |
| CCTGCAAATTATCATTGAAA+AGG | - | chr3.4:85529046-85529065 | None:intergenic | 30.0% | |
| GAAAGCCAATGTATGTAATT+TGG | - | chr3.4:85529155-85529174 | None:intergenic | 30.0% | |
| GAGGAAAATAATGATTACCT+TGG | - | chr3.4:85528026-85528045 | None:intergenic | 30.0% | |
| TGAAGATTGTAGTTTAGATG+AGG | + | chr3.4:85527584-85527603 | MS.gene013439:CDS | 30.0% | |
| TGATGTTACTGACAACTTAT+TGG | + | chr3.4:85529380-85529399 | MS.gene013439:CDS | 30.0% | |
| TTCTATCAATTGTACCTGTT+TGG | - | chr3.4:85529115-85529134 | None:intergenic | 30.0% | |
| TTGGAATGAAATGAAAACGT+GGG | + | chr3.4:85527808-85527827 | MS.gene013439:intron | 30.0% | |
| ! | AATCGGTTTCTTAATCGATT+TGG | - | chr3.4:85528818-85528837 | None:intergenic | 30.0% |
| ! | CATGTTTTCTTTTTCCTTGT+TGG | + | chr3.4:85527789-85527808 | MS.gene013439:intron | 30.0% |
| ! | CATTCTCTGAAGATACTAAT+TGG | + | chr3.4:85529214-85529233 | MS.gene013439:CDS | 30.0% |
| ! | GTTTTCATTTCATTCCAACA+AGG | - | chr3.4:85527806-85527825 | None:intergenic | 30.0% |
| ! | TATGAGTAGCTTCTTTTTGT+TGG | - | chr3.4:85527415-85527434 | None:intergenic | 30.0% |
| !! | ACCATAGTCTCTAAAACAAT+TGG | + | chr3.4:85527945-85527964 | MS.gene013439:CDS | 30.0% |
| !! | CACAGTTGGCAAATTTTAAT+TGG | - | chr3.4:85528682-85528701 | None:intergenic | 30.0% |
| !! | CCTTTTCAATGATAATTTGC+AGG | + | chr3.4:85529043-85529062 | MS.gene013439:intron | 30.0% |
| !! | TATGGTTAGGTTCACTTTTA+CGG | + | chr3.4:85528374-85528393 | MS.gene013439:intron | 30.0% |
| !!! | ACCAATTGTTTTAGAGACTA+TGG | - | chr3.4:85527949-85527968 | None:intergenic | 30.0% |
| !!! | AGAATTTTTCAAGACACAGT+TGG | - | chr3.4:85528696-85528715 | None:intergenic | 30.0% |
| AAGAATCCTGTTTGTTCTGA+TGG | + | chr3.4:85527486-85527505 | MS.gene013439:CDS | 35.0% | |
| ACCTTGGGAAATTAGAATTG+AGG | - | chr3.4:85528010-85528029 | None:intergenic | 35.0% | |
| ACTCATAAAAGAGCTTCTTC+AGG | + | chr3.4:85527428-85527447 | MS.gene013439:CDS | 35.0% | |
| AGAATCCTGTTTGTTCTGAT+GGG | + | chr3.4:85527487-85527506 | MS.gene013439:CDS | 35.0% | |
| ATAGCAGATGTTTGGTTATG+CGG | - | chr3.4:85528483-85528502 | None:intergenic | 35.0% | |
| CACATGTTATTAGCTCAGAA+AGG | + | chr3.4:85529304-85529323 | MS.gene013439:CDS | 35.0% | |
| CAGAATCATGTGAATCATTC+AGG | + | chr3.4:85527612-85527631 | MS.gene013439:CDS | 35.0% | |
| CTCATAAAAGAGCTTCTTCA+GGG | + | chr3.4:85527429-85527448 | MS.gene013439:CDS | 35.0% | |
| GAATTCTAATCCTCACTCAA+AGG | + | chr3.4:85529251-85529270 | MS.gene013439:CDS | 35.0% | |
| GCATTATTTGCCACAATTCA+AGG | + | chr3.4:85528617-85528636 | MS.gene013439:intron | 35.0% | |
| GGCAAATAATGCATTGTGAT+TGG | - | chr3.4:85528609-85528628 | None:intergenic | 35.0% | |
| GTTGGAATGAAATGAAAACG+TGG | + | chr3.4:85527807-85527826 | MS.gene013439:intron | 35.0% | |
| TCCTCAATTCTAATTTCCCA+AGG | + | chr3.4:85528006-85528025 | MS.gene013439:CDS | 35.0% | |
| TTATTTGCCACAATTCAAGG+AGG | + | chr3.4:85528620-85528639 | MS.gene013439:intron | 35.0% | |
| ! | ATGTGAATCATTCAGGTTCA+GGG | + | chr3.4:85527619-85527638 | MS.gene013439:CDS | 35.0% |
| ! | TAAGGATTTTGAACTCTCCA+AGG | + | chr3.4:85529425-85529444 | MS.gene013439:CDS | 35.0% |
| ! | TAATTTGCAGGAGTTACTTC+AGG | + | chr3.4:85529055-85529074 | MS.gene013439:intron | 35.0% |
| !!! | AAGATTTTGAGATTCAGTGC+AGG | - | chr3.4:85529463-85529482 | None:intergenic | 35.0% |
| !!! | ACTATTTTTGTACGGACACA+AGG | + | chr3.4:85527763-85527782 | MS.gene013439:intron | 35.0% |
| ACATGCACATAGCAGATGTT+TGG | - | chr3.4:85528491-85528510 | None:intergenic | 40.0% | |
| ACTCATTCCTGGAGAAAGTA+CGG | + | chr3.4:85527972-85527991 | MS.gene013439:CDS | 40.0% | |
| AGACCATTTGTGGAGTTTGT+AGG | - | chr3.4:85529194-85529213 | None:intergenic | 40.0% | |
| GAAGAGGTTCCTACAAAAGA+AGG | + | chr3.4:85527739-85527758 | MS.gene013439:CDS | 40.0% | |
| GACCATTTGTGGAGTTTGTA+GGG | - | chr3.4:85529193-85529212 | None:intergenic | 40.0% | |
| GCAGGAATACACAATATCCT+TGG | - | chr3.4:85529445-85529464 | None:intergenic | 40.0% | |
| GTCTCCTTCTGTTAAGGAAT+TGG | + | chr3.4:85527509-85527528 | MS.gene013439:CDS | 40.0% | |
| TAGCAGATGTTTGGTTATGC+GGG | - | chr3.4:85528482-85528501 | None:intergenic | 40.0% | |
| TCAGAGAATGAGACCATTTG+TGG | - | chr3.4:85529204-85529223 | None:intergenic | 40.0% | |
| TCCTTCTGTTAAGGAATTGG+TGG | + | chr3.4:85527512-85527531 | MS.gene013439:CDS | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | + | chr3.4:85528643-85528662 | MS.gene013439:intron | 40.0% | |
| TTCTAATCCTCACTCAAAGG+AGG | + | chr3.4:85529254-85529273 | MS.gene013439:CDS | 40.0% | |
| TTGTCAGTAACATCACTCCT+CGG | - | chr3.4:85529375-85529394 | None:intergenic | 40.0% | |
| ! | CATGTGAATCATTCAGGTTC+AGG | + | chr3.4:85527618-85527637 | MS.gene013439:CDS | 40.0% |
| ! | TGTGAATCATTCAGGTTCAG+GGG | + | chr3.4:85527620-85527639 | MS.gene013439:CDS | 40.0% |
| AAACACTATACCAGCTAGCC+CGG | - | chr3.4:85528975-85528994 | None:intergenic | 45.0% | |
| AGGTTGCAAAGCAACCAAAC+AGG | + | chr3.4:85529098-85529117 | MS.gene013439:CDS | 45.0% | |
| AGTAGTACTGTCGTCGTTGT+TGG | - | chr3.4:85529352-85529371 | None:intergenic | 45.0% | |
| CACCCTACAAACTCCACAAA+TGG | + | chr3.4:85529188-85529207 | MS.gene013439:CDS | 45.0% | |
| CATTTGTGGAGTTTGTAGGG+TGG | - | chr3.4:85529190-85529209 | None:intergenic | 45.0% | |
| CCAACTACAAAGGATCGAAG+AGG | + | chr3.4:85527723-85527742 | MS.gene013439:CDS | 45.0% | |
| CCTCTTCGATCCTTTGTAGT+TGG | - | chr3.4:85527726-85527745 | None:intergenic | 45.0% | |
| GAGATTGTCGCCAACTACAA+AGG | + | chr3.4:85527713-85527732 | MS.gene013439:CDS | 45.0% | |
| GCAGGAAAACAGATGAGACA+AGG | + | chr3.4:85527922-85527941 | MS.gene013439:intron | 45.0% | |
| GCCACCAATTCCTTAACAGA+AGG | - | chr3.4:85527516-85527535 | None:intergenic | 45.0% | |
| GTAGTACTGTCGTCGTTGTT+GGG | - | chr3.4:85529351-85529370 | None:intergenic | 45.0% | |
| TTCAGGGGAACATGGTTCAT+TGG | + | chr3.4:85527635-85527654 | MS.gene013439:CDS | 45.0% | |
| TTGTTGGCAGTGACAGTTTC+AGG | - | chr3.4:85527399-85527418 | None:intergenic | 45.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | + | chr3.4:85528637-85528656 | MS.gene013439:intron | 45.0% |
| ! | CAATTGGTGACACTCATTCC+TGG | + | chr3.4:85527961-85527980 | MS.gene013439:CDS | 45.0% |
| ! | GTTTGGTTGCTTTGCAACCT+TGG | - | chr3.4:85529098-85529117 | None:intergenic | 45.0% |
| ! | TGATGGGTCTCCTTCTGTTA+AGG | + | chr3.4:85527503-85527522 | MS.gene013439:CDS | 45.0% |
| !!! | TAGTAAAAAATATTTTTTAA+CGG | + | chr3.4:85528169-85528188 | MS.gene013439:intron | 5.0% |
| AACACTATACCAGCTAGCCC+GGG | - | chr3.4:85528974-85528993 | None:intergenic | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | - | chr3.4:85528630-85528649 | None:intergenic | 50.0% | |
| AGGGGAACATGGTTCATTGG+TGG | + | chr3.4:85527638-85527657 | MS.gene013439:CDS | 50.0% | |
| CTTCTGACCGTACTTTCTCC+AGG | - | chr3.4:85527982-85528001 | None:intergenic | 50.0% | |
| GGAGACCCATCAGAACAAAC+AGG | - | chr3.4:85527495-85527514 | None:intergenic | 50.0% | |
| GTCAGAACCTCCTTTGAGTG+AGG | - | chr3.4:85529264-85529283 | None:intergenic | 50.0% | |
| TGCAACCTTGGTCATGCTTC+CGG | - | chr3.4:85529086-85529105 | None:intergenic | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | + | chr3.4:85528625-85528644 | MS.gene013439:intron | 50.0% | |
| ! | CATTCAGGTTCAGGGGAACA+TGG | + | chr3.4:85527627-85527646 | MS.gene013439:CDS | 50.0% |
| ! | CTGGAGAAAGTACGGTCAGA+AGG | + | chr3.4:85527980-85527999 | MS.gene013439:CDS | 50.0% |
| !! | ACAAATTAACCCGGGCTAGC+TGG | + | chr3.4:85528962-85528981 | MS.gene013439:intron | 50.0% |
| ACGACGACAGTACTACTCCG+AGG | + | chr3.4:85529355-85529374 | MS.gene013439:CDS | 55.0% | |
| GCAACCTTGGTCATGCTTCC+GGG | - | chr3.4:85529085-85529104 | None:intergenic | 55.0% | |
| GGAGTTACTTCAGGTGCACC+CGG | + | chr3.4:85529064-85529083 | MS.gene013439:intron | 55.0% | |
| ! | TGCACCCGGAAGCATGACCA+AGG | + | chr3.4:85529078-85529097 | MS.gene013439:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 85527381 | 85529557 | 85527381 | ID=MS.gene013439 |
| chr3.4 | mRNA | 85527381 | 85529557 | 85527381 | ID=MS.gene013439.t1;Parent=MS.gene013439 |
| chr3.4 | exon | 85527381 | 85527760 | 85527381 | ID=MS.gene013439.t1.exon1;Parent=MS.gene013439.t1 |
| chr3.4 | CDS | 85527381 | 85527760 | 85527381 | ID=cds.MS.gene013439.t1;Parent=MS.gene013439.t1 |
| chr3.4 | exon | 85527926 | 85528027 | 85527926 | ID=MS.gene013439.t1.exon2;Parent=MS.gene013439.t1 |
| chr3.4 | CDS | 85527926 | 85528027 | 85527926 | ID=cds.MS.gene013439.t1;Parent=MS.gene013439.t1 |
| chr3.4 | exon | 85529065 | 85529557 | 85529065 | ID=MS.gene013439.t1.exon3;Parent=MS.gene013439.t1 |
| chr3.4 | CDS | 85529065 | 85529557 | 85529065 | ID=cds.MS.gene013439.t1;Parent=MS.gene013439.t1 |
| Gene Sequence |
| Protein sequence |
