Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013455.t1 | XP_003602454.1 | 91.2 | 262 | 14 | 4 | 1 | 259 | 1 | 256 | 6.50E-125 | 456.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013455.t1 | A2Y5T7 | 42.7 | 75 | 43 | 0 | 138 | 212 | 167 | 241 | 2.5e-08 | 60.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013455.t1 | G7J9R3 | 91.2 | 262 | 14 | 4 | 1 | 259 | 1 | 256 | 4.7e-125 | 456.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013455.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013455.t1 | MTR_3g093540 | 90.000 | 260 | 21 | 3 | 1 | 259 | 1 | 256 | 4.84e-166 | 459 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013455.t1 | AT4G19985 | 47.034 | 236 | 88 | 5 | 17 | 227 | 14 | 237 | 1.62e-66 | 206 |
| MS.gene013455.t1 | AT4G19985 | 47.034 | 236 | 88 | 5 | 17 | 227 | 14 | 237 | 1.62e-66 | 206 |
| MS.gene013455.t1 | AT4G19985 | 41.418 | 268 | 88 | 6 | 17 | 227 | 14 | 269 | 2.84e-59 | 189 |
| MS.gene013455.t1 | AT4G19985 | 38.068 | 176 | 72 | 5 | 17 | 167 | 14 | 177 | 9.03e-30 | 110 |
| MS.gene013455.t1 | AT4G19985 | 38.728 | 173 | 69 | 5 | 17 | 164 | 14 | 174 | 9.13e-30 | 110 |
| MS.gene013455.t1 | AT4G19985 | 38.728 | 173 | 69 | 5 | 17 | 164 | 14 | 174 | 9.13e-30 | 110 |
| MS.gene013455.t1 | AT4G19985 | 38.728 | 173 | 69 | 5 | 17 | 164 | 14 | 174 | 9.13e-30 | 110 |
Find 63 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAATCAATGGAATTAAAA+TGG | 0.164701 | 3.4:+85345520 | MS.gene013455:CDS |
| GGTCGTGCTGTTTCTGATTT+TGG | 0.179788 | 3.4:+85345912 | MS.gene013455:CDS |
| TGGATTTGGTGGTGACATTT+TGG | 0.201084 | 3.4:+85347588 | MS.gene013455:CDS |
| TGACGGTTTGCTCACTTTCC+TGG | 0.239344 | 3.4:-85347654 | None:intergenic |
| TTCGGAGATGTTGAGGATTA+AGG | 0.249166 | 3.4:-85345653 | None:intergenic |
| CAGGAGTGTCGGAGATATTA+AGG | 0.273878 | 3.4:-85345719 | None:intergenic |
| CCTCACCACATTGATGTTGA+TGG | 0.296205 | 3.4:+85345813 | MS.gene013455:CDS |
| CTTGTTGAGTTGTGTGGTTT+TGG | 0.298267 | 3.4:-85345568 | None:intergenic |
| CCTGAACGTGATTTGTTGAT+TGG | 0.298630 | 3.4:+85345885 | MS.gene013455:CDS |
| ATTAAGGTGGTGTGGGTTAG+TGG | 0.360151 | 3.4:-85345637 | None:intergenic |
| TGCAAATGGAGCAGAGGTTT+CGG | 0.370316 | 3.4:-85345671 | None:intergenic |
| TTGTTGATATCAACTGGTTC+AGG | 0.374194 | 3.4:-85345738 | None:intergenic |
| CGTGATTTGTTGATTGGGTT+TGG | 0.384811 | 3.4:+85345891 | MS.gene013455:CDS |
| CGAAGCTTGTTGATATCAAC+TGG | 0.398400 | 3.4:-85345744 | None:intergenic |
| CTGAACGTGATTTGTTGATT+GGG | 0.419104 | 3.4:+85345886 | MS.gene013455:CDS |
| TGCTTCTATATACGATGTTA+TGG | 0.428860 | 3.4:+85345941 | MS.gene013455:CDS |
| TATTCCATCCTTGAGGAGAA+TGG | 0.433471 | 3.4:+85346555 | MS.gene013455:CDS |
| TCCTTGAGGAGAATGGGAAT+TGG | 0.440922 | 3.4:+85346562 | MS.gene013455:CDS |
| ATTCCATCCTTGAGGAGAAT+GGG | 0.454926 | 3.4:+85346556 | MS.gene013455:CDS |
| GTGTCGGAGATATTAAGGTT+GGG | 0.458757 | 3.4:-85345714 | None:intergenic |
| CCAATCAACAAATCACGTTC+AGG | 0.463909 | 3.4:-85345885 | None:intergenic |
| CCTCTCATCCTCTGAGCAAA+GGG | 0.464970 | 3.4:-85347472 | None:intergenic |
| GGAAATGAAAAGTGGGAGAA+GGG | 0.466176 | 3.4:-85345616 | None:intergenic |
| GAAATCAATGGAATTAAAAT+GGG | 0.468872 | 3.4:+85345521 | MS.gene013455:CDS |
| AACAATAGCTTTCGGCCTGC+AGG | 0.469985 | 3.4:-85347679 | None:intergenic |
| AAATCACGTTCAGGAGAAAC+CGG | 0.482910 | 3.4:-85345876 | None:intergenic |
| TTTAAGGCTTGTGGATTTGG+TGG | 0.483526 | 3.4:+85347577 | MS.gene013455:CDS |
| CAGAGGTTTCGGAGATGTTG+AGG | 0.489231 | 3.4:-85345660 | None:intergenic |
| GAGCAAACCGTCACACCTGC+AGG | 0.493036 | 3.4:+85347664 | MS.gene013455:CDS |
| GAAAAGTGGGAGAAGGGGTG+TGG | 0.499059 | 3.4:-85345610 | None:intergenic |
| TCCAATTCCCATTCTCCTCA+AGG | 0.504293 | 3.4:-85346563 | None:intergenic |
| GTGAAAAGAGTGGTTGCAAA+TGG | 0.508457 | 3.4:-85345685 | None:intergenic |
| GCGGAACCAACAATAGCTTT+CGG | 0.512055 | 3.4:-85347687 | None:intergenic |
| TGCAGGCCGAAAGCTATTGT+TGG | 0.512613 | 3.4:+85347681 | MS.gene013455:CDS |
| AACTGTTTCATCAACAATCC+AGG | 0.512965 | 3.4:+85347636 | MS.gene013455:CDS |
| TGTCGGAGATATTAAGGTTG+GGG | 0.519931 | 3.4:-85345713 | None:intergenic |
| CTTTCGGCCTGCAGGTGTGA+CGG | 0.523798 | 3.4:-85347671 | None:intergenic |
| ACCTCTCATCCTCTGAGCAA+AGG | 0.534812 | 3.4:-85347473 | None:intergenic |
| CCCTTTGCTCAGAGGATGAG+AGG | 0.537381 | 3.4:+85347472 | MS.gene013455:CDS |
| TTTGTTCTTGTTGAGTTGTG+TGG | 0.538918 | 3.4:-85345574 | None:intergenic |
| AGTGTCGGAGATATTAAGGT+TGG | 0.549755 | 3.4:-85345715 | None:intergenic |
| ATCAACTGGTTCAGGAGTGT+CGG | 0.554412 | 3.4:-85345730 | None:intergenic |
| TGTTGAGGATTAAGGTGGTG+TGG | 0.555356 | 3.4:-85345645 | None:intergenic |
| AACAGTTCTCGTGTACATCA+TGG | 0.561270 | 3.4:-85347620 | None:intergenic |
| GTTGAGGATTAAGGTGGTGT+GGG | 0.570563 | 3.4:-85345644 | None:intergenic |
| TGGAAATGAAAAGTGGGAGA+AGG | 0.570598 | 3.4:-85345617 | None:intergenic |
| ATTCCCATTCTCCTCAAGGA+TGG | 0.579989 | 3.4:-85346559 | None:intergenic |
| TGCAGGTTATTCCATCCTTG+AGG | 0.587883 | 3.4:+85346548 | MS.gene013455:intron |
| GGAGATGTTGAGGATTAAGG+TGG | 0.594801 | 3.4:-85345650 | None:intergenic |
| ACTCAATATTATCGTCCTTG+AGG | 0.598802 | 3.4:-85347733 | None:intergenic |
| GGGTTAGTGGAAATGAAAAG+TGG | 0.602812 | 3.4:-85345624 | None:intergenic |
| GACAGATTCAAGAATCCTCA+AGG | 0.610174 | 3.4:+85347718 | MS.gene013455:CDS |
| GAAATGAAAAGTGGGAGAAG+GGG | 0.622002 | 3.4:-85345615 | None:intergenic |
| CATAGCAGCCCTTTGCTCAG+AGG | 0.625766 | 3.4:+85347464 | MS.gene013455:CDS |
| AGTGGTTGCAAATGGAGCAG+AGG | 0.626606 | 3.4:-85345677 | None:intergenic |
| TTTCGAAGCGAAAACTTCAG+TGG | 0.633639 | 3.4:-85345502 | None:intergenic |
| TTCTTGAATCTGTCAATCAG+AGG | 0.641603 | 3.4:-85347709 | None:intergenic |
| CCATCAACATCAATGTGGTG+AGG | 0.651681 | 3.4:-85345813 | None:intergenic |
| GGTTAGTGGAAATGAAAAGT+GGG | 0.652172 | 3.4:-85345623 | None:intergenic |
| TGGGGAATCTGTGAAAAGAG+TGG | 0.656361 | 3.4:-85345695 | None:intergenic |
| TTGAATCTGTCAATCAGAGG+CGG | 0.671155 | 3.4:-85347706 | None:intergenic |
| TGATTGTTAGAAAAGTTGTG+AGG | 0.694957 | 3.4:+85346590 | MS.gene013455:CDS |
| TTAAACCATCAACATCAATG+TGG | 0.739906 | 3.4:-85345818 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr3.4:85347000-85347019 | MS.gene013455:intron | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr3.4:85346999-85347018 | MS.gene013455:intron | 10.0% |
| !! | AATTAGAGTTATATTGTATT+GGG | + | chr3.4:85347065-85347084 | MS.gene013455:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr3.4:85347001-85347020 | MS.gene013455:intron | 15.0% |
| !! | TAATTAGAGTTATATTGTAT+TGG | + | chr3.4:85347064-85347083 | MS.gene013455:intron | 15.0% |
| !!! | AACTTTTTATGTTTTCTTAA+TGG | + | chr3.4:85346006-85346025 | MS.gene013455:intron | 15.0% |
| !!! | ACACTTTTTTTTTAGAAAAT+GGG | + | chr3.4:85347135-85347154 | MS.gene013455:intron | 15.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr3.4:85347024-85347043 | MS.gene013455:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr3.4:85347097-85347116 | MS.gene013455:intron | 20.0% |
| !! | ATTGTCAGTTATTGTAATTA+TGG | - | chr3.4:85346130-85346149 | None:intergenic | 20.0% |
| !! | CAAAATAACCAAAATAATGA+TGG | - | chr3.4:85346065-85346084 | None:intergenic | 20.0% |
| !! | GAAATCAATGGAATTAAAAT+GGG | + | chr3.4:85345521-85345540 | MS.gene013455:CDS | 20.0% |
| !!! | ATTTTGGTTATTTTGTTTCT+GGG | + | chr3.4:85346070-85346089 | MS.gene013455:intron | 20.0% |
| !!! | GACACTTTTTTTTTAGAAAA+TGG | + | chr3.4:85347134-85347153 | MS.gene013455:intron | 20.0% |
| !!! | TATTTTGGTTATTTTGTTTC+TGG | + | chr3.4:85346069-85346088 | MS.gene013455:intron | 20.0% |
| !!! | TCTTTGTTTTGAAAAAATGT+AGG | - | chr3.4:85345976-85345995 | None:intergenic | 20.0% |
| !!! | TTTTTCCCTTTTTCAATATT+TGG | + | chr3.4:85346453-85346472 | MS.gene013455:intron | 20.0% |
| ! | AAGTTCCAAATATCTGAATA+TGG | + | chr3.4:85347402-85347421 | MS.gene013455:intron | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | + | chr3.4:85346386-85346405 | MS.gene013455:intron | 25.0% |
| ! | AATATAAAGGGTTGTGTATA+AGG | + | chr3.4:85347345-85347364 | MS.gene013455:intron | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+GGG | + | chr3.4:85346387-85346406 | MS.gene013455:intron | 25.0% |
| ! | ATAGACCATATTCAGATATT+TGG | - | chr3.4:85347410-85347429 | None:intergenic | 25.0% |
| ! | ATATAAAGGGTTGTGTATAA+GGG | + | chr3.4:85347346-85347365 | MS.gene013455:intron | 25.0% |
| ! | ATGAGTTCAATTTCATATCT+TGG | + | chr3.4:85346032-85346051 | MS.gene013455:intron | 25.0% |
| ! | ATTGAATCATTACAGAACAT+AGG | - | chr3.4:85346633-85346652 | None:intergenic | 25.0% |
| ! | CAATGCCAAATATTGAAAAA+GGG | - | chr3.4:85346461-85346480 | None:intergenic | 25.0% |
| ! | CAGATTATAGCTTATACAAT+AGG | + | chr3.4:85346343-85346362 | MS.gene013455:intron | 25.0% |
| ! | CGAAATCAATGGAATTAAAA+TGG | + | chr3.4:85345520-85345539 | MS.gene013455:CDS | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr3.4:85347023-85347042 | MS.gene013455:intron | 25.0% |
| ! | TAAGTCAAATTAAACCTTGT+AGG | + | chr3.4:85347280-85347299 | MS.gene013455:intron | 25.0% |
| ! | TCAATGCCAAATATTGAAAA+AGG | - | chr3.4:85346462-85346481 | None:intergenic | 25.0% |
| ! | TTGAATTTAATCACATGTGT+CGG | + | chr3.4:85346881-85346900 | MS.gene013455:intron | 25.0% |
| !! | ACATGTTTTTCATTAACAAC+AGG | - | chr3.4:85346429-85346448 | None:intergenic | 25.0% |
| !! | ATCATTCATGAAGTTTTTGT+TGG | + | chr3.4:85346729-85346748 | MS.gene013455:intron | 25.0% |
| !! | CTATAATCTGTTCTCTATTT+TGG | - | chr3.4:85346333-85346352 | None:intergenic | 25.0% |
| !! | TGAAATGGCTCAATTATTTT+GGG | + | chr3.4:85347112-85347131 | MS.gene013455:intron | 25.0% |
| !! | TTGAAATGGCTCAATTATTT+TGG | + | chr3.4:85347111-85347130 | MS.gene013455:intron | 25.0% |
| !!! | TTTTCTCAGGTTGTTTTTTA+AGG | + | chr3.4:85347561-85347580 | MS.gene013455:intron | 25.0% |
| AAACAGTCTCACAATACTTA+TGG | - | chr3.4:85346241-85346260 | None:intergenic | 30.0% | |
| ACATCAATTACTGTTCACAA+AGG | - | chr3.4:85347533-85347552 | None:intergenic | 30.0% | |
| ACTAACTATTTATGCCTGTT+TGG | + | chr3.4:85346189-85346208 | MS.gene013455:intron | 30.0% | |
| ATTAGAATCTCATCAGCAAA+AGG | - | chr3.4:85346709-85346728 | None:intergenic | 30.0% | |
| ATTGATCTTTAACCAGAGAT+GGG | - | chr3.4:85347377-85347396 | None:intergenic | 30.0% | |
| CATCAATTACTGTTCACAAA+GGG | - | chr3.4:85347532-85347551 | None:intergenic | 30.0% | |
| CTTGTAGGAGTTGAATATAA+GGG | + | chr3.4:85347295-85347314 | MS.gene013455:intron | 30.0% | |
| GATAAAACTAGACTATGTAG+AGG | - | chr3.4:85347510-85347529 | None:intergenic | 30.0% | |
| GCAATAAAAGCTGTCATATT+GGG | + | chr3.4:85347228-85347247 | MS.gene013455:intron | 30.0% | |
| TATAAGATATAAGCCCTGTT+TGG | - | chr3.4:85346403-85346422 | None:intergenic | 30.0% | |
| TATTGATCTTTAACCAGAGA+TGG | - | chr3.4:85347378-85347397 | None:intergenic | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | - | chr3.4:85346206-85346225 | None:intergenic | 30.0% | |
| TGATTGTTAGAAAAGTTGTG+AGG | + | chr3.4:85346590-85346609 | MS.gene013455:CDS | 30.0% | |
| TGCAATAAAAGCTGTCATAT+TGG | + | chr3.4:85347227-85347246 | MS.gene013455:intron | 30.0% | |
| TGCTTCTATATACGATGTTA+TGG | + | chr3.4:85345941-85345960 | MS.gene013455:CDS | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr3.4:85347008-85347027 | MS.gene013455:intron | 30.0% | |
| TTAAACCATCAACATCAATG+TGG | - | chr3.4:85345821-85345840 | None:intergenic | 30.0% | |
| TTCTGTAATGATTCAATGCA+TGG | + | chr3.4:85346636-85346655 | MS.gene013455:intron | 30.0% | |
| TTGTAGGAGTTGAATATAAG+GGG | + | chr3.4:85347296-85347315 | MS.gene013455:intron | 30.0% | |
| ! | CAATTTCATATCTTGGTTCT+TGG | + | chr3.4:85346039-85346058 | MS.gene013455:intron | 30.0% |
| ! | TTTCTGGGTTTTCTTAGTTT+TGG | + | chr3.4:85346085-85346104 | MS.gene013455:intron | 30.0% |
| ! | TTTTTGTTGGCATAGAGTTT+TGG | + | chr3.4:85346742-85346761 | MS.gene013455:intron | 30.0% |
| !! | CAATATTTGGCATTGATTTG+AGG | + | chr3.4:85346466-85346485 | MS.gene013455:intron | 30.0% |
| !! | TAAGTATTGTGAGACTGTTT+TGG | + | chr3.4:85346241-85346260 | MS.gene013455:intron | 30.0% |
| !! | TTCTGGGTTTTCTTAGTTTT+GGG | + | chr3.4:85346086-85346105 | MS.gene013455:intron | 30.0% |
| !!! | TTTTTTAAGGCTTGTGGATT+TGG | + | chr3.4:85347574-85347593 | MS.gene013455:CDS | 30.0% |
| AACTGTTTCATCAACAATCC+AGG | + | chr3.4:85347636-85347655 | MS.gene013455:CDS | 35.0% | |
| AGAAAATGGGTCAGATATTC+CGG | + | chr3.4:85347148-85347167 | MS.gene013455:intron | 35.0% | |
| ATCTGTGTGAAAAACCAAAC+TGG | - | chr3.4:85346979-85346998 | None:intergenic | 35.0% | |
| CATTACAGAACATAGGCAAA+AGG | - | chr3.4:85346626-85346645 | None:intergenic | 35.0% | |
| CCTTATATTCAACTCCTACA+AGG | - | chr3.4:85347297-85347316 | None:intergenic | 35.0% | |
| CCTTGTAGGAGTTGAATATA+AGG | + | chr3.4:85347294-85347313 | MS.gene013455:intron | 35.0% | |
| GGTTAGTGGAAATGAAAAGT+GGG | - | chr3.4:85345626-85345645 | None:intergenic | 35.0% | |
| TTCTTGAATCTGTCAATCAG+AGG | - | chr3.4:85347712-85347731 | None:intergenic | 35.0% | |
| ! | AGTTTTCGCTTCGAAATCAA+TGG | + | chr3.4:85345509-85345528 | MS.gene013455:CDS | 35.0% |
| ! | GTTCTTGGCCATCATTATTT+TGG | + | chr3.4:85346054-85346073 | MS.gene013455:intron | 35.0% |
| ! | TGAAAGTGAGTATCTAGTTC+AGG | - | chr3.4:85346664-85346683 | None:intergenic | 35.0% |
| ! | TTGTTGATATCAACTGGTTC+AGG | - | chr3.4:85345741-85345760 | None:intergenic | 35.0% |
| ! | TTTGTTCTTGTTGAGTTGTG+TGG | - | chr3.4:85345577-85345596 | None:intergenic | 35.0% |
| !! | CTGAACGTGATTTGTTGATT+GGG | + | chr3.4:85345886-85345905 | MS.gene013455:CDS | 35.0% |
| !!! | AGGTTGTTTTTTAAGGCTTG+TGG | + | chr3.4:85347568-85347587 | MS.gene013455:intron | 35.0% |
| !!! | CATTGTTGATTTTTTCACGC+CGG | + | chr3.4:85345857-85345876 | MS.gene013455:CDS | 35.0% |
| AAATCACGTTCAGGAGAAAC+CGG | - | chr3.4:85345879-85345898 | None:intergenic | 40.0% | |
| AACAGTTCTCGTGTACATCA+TGG | - | chr3.4:85347623-85347642 | None:intergenic | 40.0% | |
| ATTCCATCCTTGAGGAGAAT+GGG | + | chr3.4:85346556-85346575 | MS.gene013455:CDS | 40.0% | |
| CCAATCAACAAATCACGTTC+AGG | - | chr3.4:85345888-85345907 | None:intergenic | 40.0% | |
| CGGCGTGAAAAAATCAACAA+TGG | - | chr3.4:85345859-85345878 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGATATTCC+GGG | + | chr3.4:85347149-85347168 | MS.gene013455:intron | 40.0% | |
| GAAATGAAAAGTGGGAGAAG+GGG | - | chr3.4:85345618-85345637 | None:intergenic | 40.0% | |
| GAATAATGCCCGTCAACTAT+GGG | - | chr3.4:85346511-85346530 | None:intergenic | 40.0% | |
| GACAGATTCAAGAATCCTCA+AGG | + | chr3.4:85347718-85347737 | MS.gene013455:CDS | 40.0% | |
| GGAAATGAAAAGTGGGAGAA+GGG | - | chr3.4:85345619-85345638 | None:intergenic | 40.0% | |
| GTCGATGTGTAAGTGTGTAT+TGG | - | chr3.4:85346832-85346851 | None:intergenic | 40.0% | |
| GTGAAAAGAGTGGTTGCAAA+TGG | - | chr3.4:85345688-85345707 | None:intergenic | 40.0% | |
| GTGTCGGAGATATTAAGGTT+GGG | - | chr3.4:85345717-85345736 | None:intergenic | 40.0% | |
| TATTCCATCCTTGAGGAGAA+TGG | + | chr3.4:85346555-85346574 | MS.gene013455:CDS | 40.0% | |
| TGAATAATGCCCGTCAACTA+TGG | - | chr3.4:85346512-85346531 | None:intergenic | 40.0% | |
| TGGAAATGAAAAGTGGGAGA+AGG | - | chr3.4:85345620-85345639 | None:intergenic | 40.0% | |
| TGTCGGAGATATTAAGGTTG+GGG | - | chr3.4:85345716-85345735 | None:intergenic | 40.0% | |
| TTCGGAGATGTTGAGGATTA+AGG | - | chr3.4:85345656-85345675 | None:intergenic | 40.0% | |
| TTGAATCTGTCAATCAGAGG+CGG | - | chr3.4:85347709-85347728 | None:intergenic | 40.0% | |
| TTTCGAAGCGAAAACTTCAG+TGG | - | chr3.4:85345505-85345524 | None:intergenic | 40.0% | |
| ! | AGTGTCGGAGATATTAAGGT+TGG | - | chr3.4:85345718-85345737 | None:intergenic | 40.0% |
| ! | CAAACTGGCTCAGATAAAAC+GGG | - | chr3.4:85346964-85346983 | None:intergenic | 40.0% |
| ! | CCAAACTGGCTCAGATAAAA+CGG | - | chr3.4:85346965-85346984 | None:intergenic | 40.0% |
| ! | GGGTTAGTGGAAATGAAAAG+TGG | - | chr3.4:85345627-85345646 | None:intergenic | 40.0% |
| ! | TCTACTATGAGGCACTAACA+CGG | + | chr3.4:85346803-85346822 | MS.gene013455:intron | 40.0% |
| ! | TTGCGTTTTCCCATAGTTGA+CGG | + | chr3.4:85346499-85346518 | MS.gene013455:intron | 40.0% |
| ! | TTTAAGGCTTGTGGATTTGG+TGG | + | chr3.4:85347577-85347596 | MS.gene013455:CDS | 40.0% |
| !! | CCTGAACGTGATTTGTTGAT+TGG | + | chr3.4:85345885-85345904 | MS.gene013455:CDS | 40.0% |
| !! | CGAAGCTTGTTGATATCAAC+TGG | - | chr3.4:85345747-85345766 | None:intergenic | 40.0% |
| !! | CGTGATTTGTTGATTGGGTT+TGG | + | chr3.4:85345891-85345910 | MS.gene013455:CDS | 40.0% |
| !! | CTTGTTGAGTTGTGTGGTTT+TGG | - | chr3.4:85345571-85345590 | None:intergenic | 40.0% |
| !! | GATGTTCTCGACTTTTTCTC+AGG | + | chr3.4:85347548-85347567 | MS.gene013455:intron | 40.0% |
| !!! | TGGATTTGGTGGTGACATTT+TGG | + | chr3.4:85347588-85347607 | MS.gene013455:CDS | 40.0% |
| AACATGCTTCAGTGTCTTGC+AGG | + | chr3.4:85346531-85346550 | MS.gene013455:intron | 45.0% | |
| ATAAGGGTTCTTCCCATCTC+TGG | + | chr3.4:85347362-85347381 | MS.gene013455:intron | 45.0% | |
| ATTCCCATTCTCCTCAAGGA+TGG | - | chr3.4:85346562-85346581 | None:intergenic | 45.0% | |
| CCATCAACATCAATGTGGTG+AGG | - | chr3.4:85345816-85345835 | None:intergenic | 45.0% | |
| CCTCACCACATTGATGTTGA+TGG | + | chr3.4:85345813-85345832 | MS.gene013455:CDS | 45.0% | |
| GCACCAACGCTTCTAATTGA+TGG | - | chr3.4:85346925-85346944 | None:intergenic | 45.0% | |
| GCGGAACCAACAATAGCTTT+CGG | - | chr3.4:85347690-85347709 | None:intergenic | 45.0% | |
| GGAGATGTTGAGGATTAAGG+TGG | - | chr3.4:85345653-85345672 | None:intergenic | 45.0% | |
| GTTGAGGATTAAGGTGGTGT+GGG | - | chr3.4:85345647-85345666 | None:intergenic | 45.0% | |
| TCACGTCAGTCTCTACTATG+AGG | + | chr3.4:85346792-85346811 | MS.gene013455:intron | 45.0% | |
| TCCAATTCCCATTCTCCTCA+AGG | - | chr3.4:85346566-85346585 | None:intergenic | 45.0% | |
| TCCTTGAGGAGAATGGGAAT+TGG | + | chr3.4:85346562-85346581 | MS.gene013455:CDS | 45.0% | |
| TGCAAATGGAGCAGAGGTTT+CGG | - | chr3.4:85345674-85345693 | None:intergenic | 45.0% | |
| TGCAGGTTATTCCATCCTTG+AGG | + | chr3.4:85346548-85346567 | MS.gene013455:intron | 45.0% | |
| TGGGGAATCTGTGAAAAGAG+TGG | - | chr3.4:85345698-85345717 | None:intergenic | 45.0% | |
| TGTTGAGGATTAAGGTGGTG+TGG | - | chr3.4:85345648-85345667 | None:intergenic | 45.0% | |
| ! | ACGCCATCAATTAGAAGCGT+TGG | + | chr3.4:85346919-85346938 | MS.gene013455:intron | 45.0% |
| ! | ATCAACTGGTTCAGGAGTGT+CGG | - | chr3.4:85345733-85345752 | None:intergenic | 45.0% |
| ! | CCGTTTTATCTGAGCCAGTT+TGG | + | chr3.4:85346962-85346981 | MS.gene013455:intron | 45.0% |
| ! | TGCGTTTTCCCATAGTTGAC+GGG | + | chr3.4:85346500-85346519 | MS.gene013455:intron | 45.0% |
| !! | ATTAAGGTGGTGTGGGTTAG+TGG | - | chr3.4:85345640-85345659 | None:intergenic | 45.0% |
| !! | CAGGAGTGTCGGAGATATTA+AGG | - | chr3.4:85345722-85345741 | None:intergenic | 45.0% |
| !!! | GGTCGTGCTGTTTCTGATTT+TGG | + | chr3.4:85345912-85345931 | MS.gene013455:CDS | 45.0% |
| !! | AAAAAAAAAACAAATATAAA+GGG | + | chr3.4:85347333-85347352 | MS.gene013455:intron | 5.0% |
| !! | TAAAAAAAAAACAAATATAA+AGG | + | chr3.4:85347332-85347351 | MS.gene013455:intron | 5.0% |
| !!! | TATTTGTTTTTTTTTTAAAT+TGG | - | chr3.4:85347329-85347348 | None:intergenic | 5.0% |
| AACAATAGCTTTCGGCCTGC+AGG | - | chr3.4:85347682-85347701 | None:intergenic | 50.0% | |
| ACCTCTCATCCTCTGAGCAA+AGG | - | chr3.4:85347476-85347495 | None:intergenic | 50.0% | |
| AGTAGAGACTGACGTGAGTG+AGG | - | chr3.4:85346789-85346808 | None:intergenic | 50.0% | |
| AGTGGTTGCAAATGGAGCAG+AGG | - | chr3.4:85345680-85345699 | None:intergenic | 50.0% | |
| ATGGGTCAGATATTCCGGGA+CGG | + | chr3.4:85347153-85347172 | MS.gene013455:intron | 50.0% | |
| CAGAGGTTTCGGAGATGTTG+AGG | - | chr3.4:85345663-85345682 | None:intergenic | 50.0% | |
| CCTCTCATCCTCTGAGCAAA+GGG | - | chr3.4:85347475-85347494 | None:intergenic | 50.0% | |
| CTCAGATAAAACGGGACGGA+GGG | - | chr3.4:85346956-85346975 | None:intergenic | 50.0% | |
| CTGGCTCAGATAAAACGGGA+CGG | - | chr3.4:85346960-85346979 | None:intergenic | 50.0% | |
| GTAGAGACTGACGTGAGTGA+GGG | - | chr3.4:85346788-85346807 | None:intergenic | 50.0% | |
| TGCAGGCCGAAAGCTATTGT+TGG | + | chr3.4:85347681-85347700 | MS.gene013455:CDS | 50.0% | |
| ! | TGACGGTTTGCTCACTTTCC+TGG | - | chr3.4:85347657-85347676 | None:intergenic | 50.0% |
| CATAGCAGCCCTTTGCTCAG+AGG | + | chr3.4:85347464-85347483 | MS.gene013455:CDS | 55.0% | |
| CCCTTTGCTCAGAGGATGAG+AGG | + | chr3.4:85347472-85347491 | MS.gene013455:CDS | 55.0% | |
| GAAAAGTGGGAGAAGGGGTG+TGG | - | chr3.4:85345613-85345632 | None:intergenic | 55.0% | |
| GACGGAGGGAGTAGTTCTCT+AGG | + | chr3.4:85347171-85347190 | MS.gene013455:intron | 55.0% | |
| GCTCAGATAAAACGGGACGG+AGG | - | chr3.4:85346957-85346976 | None:intergenic | 55.0% | |
| GTCAGATATTCCGGGACGGA+GGG | + | chr3.4:85347157-85347176 | MS.gene013455:intron | 55.0% | |
| CTTTCGGCCTGCAGGTGTGA+CGG | - | chr3.4:85347674-85347693 | None:intergenic | 60.0% | |
| GAGAACTACTCCCTCCGTCC+CGG | - | chr3.4:85347170-85347189 | None:intergenic | 60.0% | |
| GAGCAAACCGTCACACCTGC+AGG | + | chr3.4:85347664-85347683 | MS.gene013455:CDS | 60.0% | |
| GGTCAGATATTCCGGGACGG+AGG | + | chr3.4:85347156-85347175 | MS.gene013455:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 85345477 | 85347747 | 85345477 | ID=MS.gene013455 |
| chr3.4 | mRNA | 85345477 | 85347747 | 85345477 | ID=MS.gene013455.t1;Parent=MS.gene013455 |
| chr3.4 | exon | 85345477 | 85345962 | 85345477 | ID=MS.gene013455.t1.exon1;Parent=MS.gene013455.t1 |
| chr3.4 | CDS | 85345477 | 85345962 | 85345477 | ID=cds.MS.gene013455.t1;Parent=MS.gene013455.t1 |
| chr3.4 | exon | 85346553 | 85346611 | 85346553 | ID=MS.gene013455.t1.exon2;Parent=MS.gene013455.t1 |
| chr3.4 | CDS | 85346553 | 85346611 | 85346553 | ID=cds.MS.gene013455.t1;Parent=MS.gene013455.t1 |
| chr3.4 | exon | 85347437 | 85347493 | 85347437 | ID=MS.gene013455.t1.exon3;Parent=MS.gene013455.t1 |
| chr3.4 | CDS | 85347437 | 85347493 | 85347437 | ID=cds.MS.gene013455.t1;Parent=MS.gene013455.t1 |
| chr3.4 | exon | 85347570 | 85347747 | 85347570 | ID=MS.gene013455.t1.exon4;Parent=MS.gene013455.t1 |
| chr3.4 | CDS | 85347570 | 85347747 | 85347570 | ID=cds.MS.gene013455.t1;Parent=MS.gene013455.t1 |
| Gene Sequence |
| Protein sequence |
