AlfalfaGEDB | MS.gene013455

M. sativa cultivar XinJiangDaYe / MS.gene013455

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008080 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747
PFAM: PF00583.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013455.t1	XP_003602454.1	91.2	262	14	4	1	259	1	256	6.50E-125	456.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013455.t1	A2Y5T7	42.7	75	43	0	138	212	167	241	2.5e-08	60.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013455.t1	G7J9R3	91.2	262	14	4	1	259	1	256	4.7e-125	456.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene013455.t1	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013455.t1	MTR_3g093540	90.000	260	21	3	1	259	1	256	4.84e-166	459

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013455.t1	AT4G19985	47.034	236	88	5	17	227	14	237	1.62e-66	206
MS.gene013455.t1	AT4G19985	47.034	236	88	5	17	227	14	237	1.62e-66	206
MS.gene013455.t1	AT4G19985	41.418	268	88	6	17	227	14	269	2.84e-59	189
MS.gene013455.t1	AT4G19985	38.068	176	72	5	17	167	14	177	9.03e-30	110
MS.gene013455.t1	AT4G19985	38.728	173	69	5	17	164	14	174	9.13e-30	110
MS.gene013455.t1	AT4G19985	38.728	173	69	5	17	164	14	174	9.13e-30	110
MS.gene013455.t1	AT4G19985	38.728	173	69	5	17	164	14	174	9.13e-30	110

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Find 63 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCACGTTCAGGAGAAAC+CGG	0.482910	3.4:-85345876	None:intergenic
AACAATAGCTTTCGGCCTGC+AGG	0.469985	3.4:-85347679	None:intergenic
AACAGTTCTCGTGTACATCA+TGG	0.561270	3.4:-85347620	None:intergenic
AACTGTTTCATCAACAATCC+AGG	0.512965	3.4:+85347636	MS.gene013455:CDS
ACCTCTCATCCTCTGAGCAA+AGG	0.534812	3.4:-85347473	None:intergenic
ACTCAATATTATCGTCCTTG+AGG	0.598802	3.4:-85347733	None:intergenic
AGTGGTTGCAAATGGAGCAG+AGG	0.626606	3.4:-85345677	None:intergenic
AGTGTCGGAGATATTAAGGT+TGG	0.549755	3.4:-85345715	None:intergenic
ATCAACTGGTTCAGGAGTGT+CGG	0.554412	3.4:-85345730	None:intergenic
ATTAAGGTGGTGTGGGTTAG+TGG	0.360151	3.4:-85345637	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAGTCTCACAATACTTA+TGG	-	chr3.4:85346241-85346260	None:intergenic	30.0%
ACATCAATTACTGTTCACAA+AGG	-	chr3.4:85347533-85347552	None:intergenic	30.0%
ACTAACTATTTATGCCTGTT+TGG	+	chr3.4:85346189-85346208	MS.gene013455:intron	30.0%
ATTAGAATCTCATCAGCAAA+AGG	-	chr3.4:85346709-85346728	None:intergenic	30.0%
ATTGATCTTTAACCAGAGAT+GGG	-	chr3.4:85347377-85347396	None:intergenic	30.0%
CATCAATTACTGTTCACAAA+GGG	-	chr3.4:85347532-85347551	None:intergenic	30.0%
CTTGTAGGAGTTGAATATAA+GGG	+	chr3.4:85347295-85347314	MS.gene013455:intron	30.0%
GATAAAACTAGACTATGTAG+AGG	-	chr3.4:85347510-85347529	None:intergenic	30.0%
GCAATAAAAGCTGTCATATT+GGG	+	chr3.4:85347228-85347247	MS.gene013455:intron	30.0%
TATAAGATATAAGCCCTGTT+TGG	-	chr3.4:85346403-85346422	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	85345477	85347747	85345477	ID=MS.gene013455
chr3.4	mRNA	85345477	85347747	85345477	ID=MS.gene013455.t1;Parent=MS.gene013455
chr3.4	exon	85345477	85345962	85345477	ID=MS.gene013455.t1.exon1;Parent=MS.gene013455.t1
chr3.4	CDS	85345477	85345962	85345477	ID=cds.MS.gene013455.t1;Parent=MS.gene013455.t1
chr3.4	exon	85346553	85346611	85346553	ID=MS.gene013455.t1.exon2;Parent=MS.gene013455.t1
chr3.4	CDS	85346553	85346611	85346553	ID=cds.MS.gene013455.t1;Parent=MS.gene013455.t1
chr3.4	exon	85347437	85347493	85347437	ID=MS.gene013455.t1.exon3;Parent=MS.gene013455.t1
chr3.4	CDS	85347437	85347493	85347437	ID=cds.MS.gene013455.t1;Parent=MS.gene013455.t1
chr3.4	exon	85347570	85347747	85347570	ID=MS.gene013455.t1.exon4;Parent=MS.gene013455.t1
chr3.4	CDS	85347570	85347747	85347570	ID=cds.MS.gene013455.t1;Parent=MS.gene013455.t1

Gene Sequence

>MS.gene013455

ATGGCGGCAACAGGAGTTGCAGCAGCCACTGAAGTTTTCGCTTCGAAATCAATGGAATTAAAATGGGTAAAAACAAGAACAAGAAGAATCACCAAAACCACACAACTCAACAAGAACAAACAAAAAACGCTATCCACACCCCTTCTCCCACTTTTCATTTCCACTAACCCACACCACCTTAATCCTCAACATCTCCGAAACCTCTGCTCCATTTGCAACCACTCTTTTCACAGATTCCCCAACCTTAATATCTCCGACACTCCTGAACCAGTTGATATCAACAAGCTTCGCATTGCTCTTTCTCATAGTGACGTTCTTGTCTCTGTCTTCTGTAAACCTCACCACATTGATGTTGATGGTTTAACTGAATCTTCATCTTCCATTGTTGATTTTTTCACGCCGGTTTCTCCTGAACGTGATTTGTTGATTGGGTTTGGTCGTGCTGTTTCTGATTTTGGTCTCACTGCTTCTATATACGATGTTATGGTAACACTTGCCTACATTTTTTCAAAACAAAGACAAAGAAAGAAACTTTTTATGTTTTCTTAATGGCTCATGAGTTCAATTTCATATCTTGGTTCTTGGCCATCATTATTTTGGTTATTTTGTTTCTGGGTTTTCTTAGTTTTGGGATTTTAACTGAATTTGTACCATAATTACAATAACTGACAATTCTAACTTTACTAATTAACGAGTGTAACTAATTATTGTAACTAACTATTTATGCCTGTTTGGATTGACTTATTTGAGTTTATCTACTGCCATAAGTATTGTGAGACTGTTTTGGTAAACTTATAAAAACAACTTTATGACATTGTTCATAAGCTGTTTTCAGCTTATTTTCAGAAGTTATCCAAAATAGAGAACAGATTATAGCTTATACAATAGGCGTTTGTGCTATAAGCTGCAAATAAGTTGTTTATCCAAACAGGGCTTATATCTTATAGTACCTGTTGTTAATGAAAAACATGTTTTGTTTTTCCCTTTTTCAATATTTGGCATTGATTTGAGGATACTGAATTTTGCGTTTTCCCATAGTTGACGGGCATTATTCAACATGCTTCAGTGTCTTGCAGGTTATTCCATCCTTGAGGAGAATGGGAATTGGAAAAATGATTGTTAGAAAAGTTGTGAGGTATGAAAATACCTTTTGCCTATGTTCTGTAATGATTCAATGCATGGTTCCTGAACTAGATACTCACTTTCAGCATGCAGCATAGCAGATTGAACCTTTTGCTGATGAGATTCTAATATCATTCATGAAGTTTTTGTTGGCATAGAGTTTTGGTTTGATGTTTGCTTAGTTTGCCCTCACTCACGTCAGTCTCTACTATGAGGCACTAACACGGACACCAATACACACTTACACATCGACACTAGTAATAATCTGAGAAAACAGAATAGTTGAATTTAATCACATGTGTCGGTGTCAGACATCTTAAACGCCATCAATTAGAAGCGTTGGTGCTACATACTCCCTCCGTCCCGTTTTATCTGAGCCAGTTTGGTTTTTCACACAGATTAAGAAAAATGTATAAATAAAGGGGAAAGTGGAATATATTGTATTGGGAATGATGAAAGTAGTATTAATTAGAGTTATATTGTATTGGGAATGATGAAAGTTGTATTGAAAATTGAAATGGCTCAATTATTTTGGGACACTTTTTTTTTAGAAAATGGGTCAGATATTCCGGGACGGAGGGAGTAGTTCTCTAGGTGCAGCGTTGTTATGTGTTTGAATTTTTGAATATGCAATAAAAGCTGTCATATTGGGAATAATATTGATGCTTTTAATTTGAAATCTAAGTCAAATTAAACCTTGTAGGAGTTGAATATAAGGGGTTGTTCACCAATTTAAAAAAAAAACAAATATAAAGGGTTGTGTATAAGGGTTCTTCCCATCTCTGGTTAAAGATCAATACAAAAAGTTCCAAATATCTGAATATGGTCTATTTTGCAGAATGCTTACAAATAGAGACATCTATGACATAGCAGCCCTTTGCTCAGAGGATGAGAGGTTGTTCATTATTCCTCTACATAGTCTAGTTTTATCCCTTTGTGAACAGTAATTGATGTTCTCGACTTTTTCTCAGGTTGTTTTTTAAGGCTTGTGGATTTGGTGGTGACATTTTGGACTCTACTACCATGATGTACACGAGAACTGTTTCATCAACAATCCAGGAAAGTGAGCAAACCGTCACACCTGCAGGCCGAAAGCTATTGTTGGTTCCGCCTCTGATTGACAGATTCAAGAATCCTCAAGGACGATAA

Protein sequence

>MS.gene013455.t1

MAATGVAAATEVFASKSMELKWVKTRTRRITKTTQLNKNKQKTLSTPLLPLFISTNPHHLNPQHLRNLCSICNHSFHRFPNLNISDTPEPVDINKLRIALSHSDVLVSVFCKPHHIDVDGLTESSSSIVDFFTPVSPERDLLIGFGRAVSDFGLTASIYDVMVIPSLRRMGIGKMIVRKVVRMLTNRDIYDIAALCSEDERLFFKACGFGGDILDSTTMMYTRTVSSTIQESEQTVTPAGRKLLLVPPLIDRFKNPQGR