Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013501.t1 | XP_003602380.1 | 94.9 | 506 | 25 | 1 | 1 | 505 | 1 | 506 | 1.10E-266 | 928.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013501.t1 | Q9FK23 | 49.5 | 493 | 243 | 4 | 1 | 491 | 1 | 489 | 5.1e-122 | 439.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013501.t1 | G7J8Z8 | 94.9 | 506 | 25 | 1 | 1 | 505 | 1 | 506 | 8.3e-267 | 928.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013501.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013501.t1 | MTR_3g092710 | 94.862 | 506 | 25 | 1 | 1 | 505 | 1 | 506 | 0.0 | 966 |
| MS.gene013501.t1 | MTR_2g034600 | 25.641 | 312 | 181 | 11 | 186 | 490 | 276 | 543 | 3.31e-21 | 97.4 |
| MS.gene013501.t1 | MTR_2g034600 | 25.641 | 312 | 181 | 11 | 186 | 490 | 280 | 547 | 3.91e-21 | 97.1 |
| MS.gene013501.t1 | MTR_2g034600 | 25.641 | 312 | 181 | 11 | 186 | 490 | 215 | 482 | 4.13e-21 | 96.7 |
| MS.gene013501.t1 | MTR_4g084630 | 25.379 | 264 | 161 | 5 | 228 | 490 | 90 | 318 | 9.92e-15 | 75.9 |
| MS.gene013501.t1 | MTR_4g070060 | 20.745 | 376 | 240 | 12 | 140 | 468 | 200 | 564 | 2.60e-14 | 75.9 |
| MS.gene013501.t1 | MTR_4g120380 | 22.183 | 284 | 202 | 8 | 218 | 490 | 75 | 350 | 3.16e-13 | 71.6 |
| MS.gene013501.t1 | MTR_4g120380 | 21.927 | 301 | 210 | 9 | 204 | 490 | 61 | 350 | 4.93e-13 | 71.2 |
| MS.gene013501.t1 | MTR_1g115415 | 21.978 | 364 | 204 | 12 | 216 | 503 | 103 | 462 | 3.49e-12 | 68.9 |
| MS.gene013501.t1 | MTR_6g003960 | 22.500 | 320 | 219 | 11 | 188 | 492 | 284 | 589 | 8.67e-12 | 68.2 |
| MS.gene013501.t1 | MTR_8g005155 | 30.147 | 136 | 88 | 2 | 363 | 493 | 407 | 540 | 8.84e-12 | 67.8 |
| MS.gene013501.t1 | MTR_2g437030 | 23.051 | 295 | 198 | 8 | 212 | 490 | 153 | 434 | 2.91e-11 | 65.9 |
| MS.gene013501.t1 | MTR_5g068860 | 23.278 | 421 | 268 | 16 | 80 | 490 | 107 | 482 | 3.59e-11 | 65.9 |
| MS.gene013501.t1 | MTR_5g094610 | 24.809 | 262 | 152 | 7 | 224 | 474 | 230 | 457 | 5.12e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013501.t1 | AT5G54180 | 48.413 | 504 | 232 | 5 | 1 | 491 | 1 | 489 | 4.13e-155 | 451 |
| MS.gene013501.t1 | AT4G14605 | 28.000 | 250 | 164 | 10 | 247 | 490 | 228 | 467 | 3.47e-17 | 84.7 |
| MS.gene013501.t1 | AT4G14605 | 28.000 | 250 | 164 | 10 | 247 | 490 | 228 | 467 | 3.47e-17 | 84.7 |
| MS.gene013501.t1 | AT4G38160 | 26.923 | 260 | 172 | 8 | 225 | 470 | 46 | 301 | 4.72e-15 | 76.6 |
| MS.gene013501.t1 | AT4G38160 | 26.923 | 260 | 172 | 8 | 225 | 470 | 46 | 301 | 4.72e-15 | 76.6 |
| MS.gene013501.t1 | AT4G38160 | 26.923 | 260 | 172 | 8 | 225 | 470 | 46 | 301 | 8.56e-15 | 76.3 |
| MS.gene013501.t1 | AT4G38160 | 26.923 | 260 | 172 | 8 | 225 | 470 | 46 | 301 | 8.71e-15 | 76.6 |
| MS.gene013501.t1 | AT2G36000 | 29.545 | 220 | 135 | 8 | 267 | 473 | 81 | 293 | 1.05e-14 | 75.9 |
| MS.gene013501.t1 | AT2G36000 | 29.545 | 220 | 135 | 8 | 267 | 473 | 81 | 293 | 1.68e-14 | 75.1 |
| MS.gene013501.t1 | AT5G07900 | 25.000 | 260 | 177 | 7 | 235 | 483 | 121 | 373 | 2.29e-12 | 69.3 |
| MS.gene013501.t1 | AT2G03050 | 28.061 | 196 | 133 | 5 | 300 | 490 | 76 | 268 | 3.57e-12 | 67.4 |
| MS.gene013501.t1 | AT2G03050 | 28.061 | 196 | 133 | 5 | 300 | 490 | 77 | 269 | 3.67e-12 | 67.4 |
| MS.gene013501.t1 | AT2G44020 | 22.444 | 401 | 218 | 12 | 180 | 490 | 58 | 455 | 5.84e-12 | 68.6 |
| MS.gene013501.t1 | AT2G21710 | 22.517 | 302 | 218 | 7 | 177 | 468 | 276 | 571 | 4.57e-11 | 65.9 |
| MS.gene013501.t1 | AT5G55580 | 26.522 | 230 | 142 | 8 | 263 | 474 | 230 | 450 | 7.65e-11 | 64.7 |
| MS.gene013501.t1 | AT1G78930 | 23.952 | 334 | 233 | 11 | 169 | 492 | 254 | 576 | 8.25e-11 | 65.1 |
Find 97 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAGCCTATTCTTGAACTA+TGG | 0.173687 | 3.4:+84765976 | MS.gene013501:CDS |
| TAAGATTGTGTTGGTGTTTC+CGG | 0.175674 | 3.4:+84765702 | MS.gene013501:CDS |
| ATGAAATAAAGAAGGGTTTA+AGG | 0.183717 | 3.4:+84766181 | MS.gene013501:CDS |
| TCCTTGAGAAATTGTATTCT+AGG | 0.235507 | 3.4:-84765760 | None:intergenic |
| TCAGTAAGAACTCTAATTCT+AGG | 0.304339 | 3.4:-84765541 | None:intergenic |
| GTCTCTTTATTTGAAGAATT+CGG | 0.325435 | 3.4:+84765031 | MS.gene013501:CDS |
| ACACTATAATTCAAGATAAT+AGG | 0.335022 | 3.4:-84765613 | None:intergenic |
| TAAAATCTGAATTGAAATAA+AGG | 0.346570 | 3.4:+84766283 | MS.gene013501:CDS |
| GTATTGGGAAAGTGCTGAAT+AGG | 0.369869 | 3.4:+84765587 | MS.gene013501:CDS |
| TCGTGACATTCAAGAGTTAC+TGG | 0.371309 | 3.4:+84766107 | MS.gene013501:CDS |
| AAGATGAGGGGAAAGGGTTG+AGG | 0.381106 | 3.4:-84764792 | None:intergenic |
| ATAGATTTCTTAAAACCCTT+TGG | 0.390276 | 3.4:+84765454 | MS.gene013501:CDS |
| TCAAGATTGGGTATAAATAT+AGG | 0.394877 | 3.4:+84765887 | MS.gene013501:CDS |
| CCGAATGGCACATTGCCATT+GGG | 0.396807 | 3.4:-84764923 | None:intergenic |
| GTTCGATTGCTTGTTGATAG+TGG | 0.398687 | 3.4:+84765340 | MS.gene013501:CDS |
| GGAAAGGGTTGAGGGTGAAC+GGG | 0.401945 | 3.4:-84764783 | None:intergenic |
| GTTGTTTGGTGGTGGTGATT+TGG | 0.403770 | 3.4:-84764843 | None:intergenic |
| CGAACCTTGCGTATAAGCTT+GGG | 0.418895 | 3.4:+84765857 | MS.gene013501:CDS |
| TTCAGTGACTAAGTGATTGA+TGG | 0.422092 | 3.4:-84765173 | None:intergenic |
| ATGTGGAGAATTTGATGGAT+AGG | 0.422481 | 3.4:-84764759 | None:intergenic |
| AGGGTTGAGTTTGAAGATGA+GGG | 0.427156 | 3.4:-84764805 | None:intergenic |
| GCGAACCTTGCGTATAAGCT+TGG | 0.427203 | 3.4:+84765856 | MS.gene013501:CDS |
| GTGGAGATGAGGATAGTATT+GGG | 0.438920 | 3.4:+84765572 | MS.gene013501:CDS |
| ACCGAATGGCACATTGCCAT+TGG | 0.443727 | 3.4:-84764924 | None:intergenic |
| TGAACTTAACTCTATTCCAT+TGG | 0.447457 | 3.4:+84765096 | MS.gene013501:CDS |
| TAAATATTTGTTGATCATCA+AGG | 0.451246 | 3.4:-84765681 | None:intergenic |
| AAAACCCATAGTTCAAGAAT+AGG | 0.452781 | 3.4:-84765981 | None:intergenic |
| CCCAATGGCAATGTGCCATT+CGG | 0.454716 | 3.4:+84764923 | MS.gene013501:CDS |
| GGTGGAGATGAGGATAGTAT+TGG | 0.457275 | 3.4:+84765571 | MS.gene013501:CDS |
| AGTTTGAAGATGAGGGGAAA+GGG | 0.457788 | 3.4:-84764798 | None:intergenic |
| GGGAAAGGGTTGAGGGTGAA+CGG | 0.459402 | 3.4:-84764784 | None:intergenic |
| AGATGAGGGGAAAGGGTTGA+GGG | 0.459590 | 3.4:-84764791 | None:intergenic |
| ACATGTACAATCTTATCAAC+AGG | 0.460797 | 3.4:-84765367 | None:intergenic |
| TGAAATAAAGAAGGGTTTAA+GGG | 0.465888 | 3.4:+84766182 | MS.gene013501:CDS |
| TGTCGAAGGCGATTTGTCAT+AGG | 0.466844 | 3.4:+84765407 | MS.gene013501:CDS |
| CGGGAATGTGGAGAATTTGA+TGG | 0.467652 | 3.4:-84764764 | None:intergenic |
| CAGTTTCCTCTCTCTGCTAC+TGG | 0.469436 | 3.4:-84765734 | None:intergenic |
| GAAGATGGAGTACTTGATAG+AGG | 0.472033 | 3.4:+84766077 | MS.gene013501:CDS |
| TGAGCCTATTCTTGAACTAT+GGG | 0.472998 | 3.4:+84765977 | MS.gene013501:CDS |
| TTTATCTGGGTTTCCTCAGA+AGG | 0.474030 | 3.4:+84765318 | MS.gene013501:CDS |
| TGGTGGTGATTTGGCGAGGA+AGG | 0.485907 | 3.4:-84764834 | None:intergenic |
| GCACAGGTATGAAATAAAGA+AGG | 0.485986 | 3.4:+84766173 | MS.gene013501:CDS |
| GATTTCTTAAAACCCTTTGG+TGG | 0.492456 | 3.4:+84765457 | MS.gene013501:CDS |
| ACAAATATTTAAGATTGTGT+TGG | 0.499280 | 3.4:+84765693 | MS.gene013501:CDS |
| GTTGAGGGTGAACGGGAATG+TGG | 0.499616 | 3.4:-84764776 | None:intergenic |
| AAATCACAATTGAGAATCAC+AGG | 0.505679 | 3.4:-84765502 | None:intergenic |
| AGAGTTCTTACTGAGTTAAG+TGG | 0.507100 | 3.4:+84765550 | MS.gene013501:CDS |
| TACAATTTCTCAAGGAATGT+GGG | 0.508650 | 3.4:+84765767 | MS.gene013501:CDS |
| TGATTTGGCGAGGAAGGAAA+AGG | 0.510218 | 3.4:-84764828 | None:intergenic |
| TGGGTATAAATATAGGACTA+AGG | 0.519559 | 3.4:+84765894 | MS.gene013501:CDS |
| AATGGAATAGAGTTAAGTTC+AGG | 0.520347 | 3.4:-84765094 | None:intergenic |
| GAGGGTTGAGTTTGAAGATG+AGG | 0.524128 | 3.4:-84764806 | None:intergenic |
| TGTGGAGAATTTGATGGATA+GGG | 0.526279 | 3.4:-84764758 | None:intergenic |
| GAGTTTGAAGATGAGGGGAA+AGG | 0.528061 | 3.4:-84764799 | None:intergenic |
| AGCTTGTATCCAAGAAATGC+AGG | 0.531555 | 3.4:-84766135 | None:intergenic |
| GTTTCAAGTGAGAACTTCAC+TGG | 0.532193 | 3.4:+84766237 | MS.gene013501:CDS |
| CTGCTACTGGTAAAGATAGC+CGG | 0.532788 | 3.4:-84765721 | None:intergenic |
| CACAGGTATGAAATAAAGAA+GGG | 0.544631 | 3.4:+84766174 | MS.gene013501:CDS |
| ACTACAGCGGCAACGGATGG+AGG | 0.545742 | 3.4:-84764891 | None:intergenic |
| GAAATAAAGAAGGGTTTAAG+GGG | 0.547648 | 3.4:+84766183 | MS.gene013501:CDS |
| ATACAATTTCTCAAGGAATG+TGG | 0.550137 | 3.4:+84765766 | MS.gene013501:CDS |
| ATCAAATGAATACCACCAAA+GGG | 0.550277 | 3.4:-84765469 | None:intergenic |
| GGGTTGAGTTTGAAGATGAG+GGG | 0.553523 | 3.4:-84764804 | None:intergenic |
| ATGGAATAGAGTTAAGTTCA+GGG | 0.553719 | 3.4:-84765093 | None:intergenic |
| GCTTATACGCAAGGTTCGCA+CGG | 0.556457 | 3.4:-84765852 | None:intergenic |
| CGATCACGCAATGAATCCAA+TGG | 0.559201 | 3.4:-84765112 | None:intergenic |
| CGAATGGCACATTGCCATTG+GGG | 0.559633 | 3.4:-84764922 | None:intergenic |
| TTTGGCGAGGAAGGAAAAGG+AGG | 0.566174 | 3.4:-84764825 | None:intergenic |
| TAACAAAGTAAATTTGTCGA+AGG | 0.566339 | 3.4:+84765393 | MS.gene013501:CDS |
| TATTATCTTGAATTATAGTG+TGG | 0.569717 | 3.4:+84765615 | MS.gene013501:CDS |
| AATCAAATGAATACCACCAA+AGG | 0.571779 | 3.4:-84765470 | None:intergenic |
| ACTACTACAGCGGCAACGGA+TGG | 0.574305 | 3.4:-84764894 | None:intergenic |
| TTGGCGAGGAAGGAAAAGGA+GGG | 0.574628 | 3.4:-84764824 | None:intergenic |
| TTATAGTGTGGAACATCTTG+AGG | 0.578549 | 3.4:+84765627 | MS.gene013501:CDS |
| ACAAGCAATCGAACCTTCTG+AGG | 0.581418 | 3.4:-84765331 | None:intergenic |
| CTCCATCTTCTTCTCTAGAG+AGG | 0.583295 | 3.4:-84766064 | None:intergenic |
| TGAGTTAAGTGGTGGAGATG+AGG | 0.587051 | 3.4:+84765561 | MS.gene013501:CDS |
| TGATTATACTGCAGTATCTG+AGG | 0.588367 | 3.4:-84766039 | None:intergenic |
| TCCTAGAATACAATTTCTCA+AGG | 0.589047 | 3.4:+84765759 | MS.gene013501:CDS |
| TTGAGAAATCGAAGCTGAAG+CGG | 0.589081 | 3.4:+84765269 | MS.gene013501:CDS |
| TGGAGGGTCGAAAATGAAAA+CGG | 0.589100 | 3.4:-84764874 | None:intergenic |
| GTTCTTACTGAGTTAAGTGG+TGG | 0.590069 | 3.4:+84765553 | MS.gene013501:CDS |
| CTACAGCGGCAACGGATGGA+GGG | 0.596461 | 3.4:-84764890 | None:intergenic |
| AGGAACATATAAAGTTTCTG+AGG | 0.600236 | 3.4:+84765647 | MS.gene013501:CDS |
| CTGTGAGAATATGCAGAAGA+TGG | 0.604021 | 3.4:+84765954 | MS.gene013501:CDS |
| TGCCTCTCTAGAGAAGAAGA+TGG | 0.604406 | 3.4:+84766062 | MS.gene013501:CDS |
| AAAACCCAAGCTTATACGCA+AGG | 0.605961 | 3.4:-84765861 | None:intergenic |
| AGTAACTACTACAGCGGCAA+CGG | 0.606334 | 3.4:-84764898 | None:intergenic |
| TTGATGACAGAATTAAGCAC+AGG | 0.607856 | 3.4:+84766157 | MS.gene013501:CDS |
| TCTTTACCAGTAGCAGAGAG+AGG | 0.644660 | 3.4:+84765728 | MS.gene013501:CDS |
| AAATAAAGAAGGGTTTAAGG+GGG | 0.657424 | 3.4:+84766184 | MS.gene013501:CDS |
| TGGAATAGAGTTAAGTTCAG+GGG | 0.673962 | 3.4:-84765092 | None:intergenic |
| AATAAAGAAGGGTTTAAGGG+GGG | 0.680018 | 3.4:+84766185 | MS.gene013501:CDS |
| TAGGACTAAGGAGTTAGCAG+TGG | 0.681301 | 3.4:+84765906 | MS.gene013501:CDS |
| TTGGTGGTGGTGATTTGGCG+AGG | 0.684582 | 3.4:-84764838 | None:intergenic |
| GAATGGCACATTGCCATTGG+GGG | 0.694158 | 3.4:-84764921 | None:intergenic |
| AATCACAATTGAGAATCACA+GGG | 0.722130 | 3.4:-84765501 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACACTATAATTCAAGATAAT+AGG | - | chr3.4:84765616-84765635 | None:intergenic | 20.0% |
| !! | TATTATCTTGAATTATAGTG+TGG | + | chr3.4:84765615-84765634 | MS.gene013501:CDS | 20.0% |
| !!! | ACAAATATTTAAGATTGTGT+TGG | + | chr3.4:84765693-84765712 | MS.gene013501:CDS | 20.0% |
| !!! | ATTTTATTTTTTCATGTTGC+AGG | + | chr3.4:84765001-84765020 | MS.gene013501:intron | 20.0% |
| !!! | TAAATATTTGTTGATCATCA+AGG | - | chr3.4:84765684-84765703 | None:intergenic | 20.0% |
| !!! | TTTTTGAGAAATGAATTACA+AGG | + | chr3.4:84765241-84765260 | MS.gene013501:CDS | 20.0% |
| ! | AATGAACCGAAAAATTTATC+TGG | + | chr3.4:84765304-84765323 | MS.gene013501:CDS | 25.0% |
| ! | ATAGATTTCTTAAAACCCTT+TGG | + | chr3.4:84765454-84765473 | MS.gene013501:CDS | 25.0% |
| ! | ATGAAATAAAGAAGGGTTTA+AGG | + | chr3.4:84766181-84766200 | MS.gene013501:CDS | 25.0% |
| ! | ATGAACCGAAAAATTTATCT+GGG | + | chr3.4:84765305-84765324 | MS.gene013501:CDS | 25.0% |
| ! | TAACAAAGTAAATTTGTCGA+AGG | + | chr3.4:84765393-84765412 | MS.gene013501:CDS | 25.0% |
| ! | TCAAGATTGGGTATAAATAT+AGG | + | chr3.4:84765887-84765906 | MS.gene013501:CDS | 25.0% |
| ! | TGAAATAAAGAAGGGTTTAA+GGG | + | chr3.4:84766182-84766201 | MS.gene013501:CDS | 25.0% |
| ! | TTTCTCAAAAAACTCAACAA+TGG | - | chr3.4:84765232-84765251 | None:intergenic | 25.0% |
| !! | GTCTCTTTATTTGAAGAATT+CGG | + | chr3.4:84765031-84765050 | MS.gene013501:CDS | 25.0% |
| !!! | GTTTTTTCATTATACTCTCT+CGG | + | chr3.4:84765136-84765155 | MS.gene013501:CDS | 25.0% |
| !!! | TTTTTTCATTATACTCTCTC+GGG | + | chr3.4:84765137-84765156 | MS.gene013501:CDS | 25.0% |
| AAAACCCATAGTTCAAGAAT+AGG | - | chr3.4:84765984-84766003 | None:intergenic | 30.0% | |
| AAATAAAGAAGGGTTTAAGG+GGG | + | chr3.4:84766184-84766203 | MS.gene013501:CDS | 30.0% | |
| AAATCACAATTGAGAATCAC+AGG | - | chr3.4:84765505-84765524 | None:intergenic | 30.0% | |
| AATCAAATGAATACCACCAA+AGG | - | chr3.4:84765473-84765492 | None:intergenic | 30.0% | |
| AATCACAATTGAGAATCACA+GGG | - | chr3.4:84765504-84765523 | None:intergenic | 30.0% | |
| AATGGAATAGAGTTAAGTTC+AGG | - | chr3.4:84765097-84765116 | None:intergenic | 30.0% | |
| ACATGTACAATCTTATCAAC+AGG | - | chr3.4:84765370-84765389 | None:intergenic | 30.0% | |
| AGGAACATATAAAGTTTCTG+AGG | + | chr3.4:84765647-84765666 | MS.gene013501:CDS | 30.0% | |
| ATACAATTTCTCAAGGAATG+TGG | + | chr3.4:84765766-84765785 | MS.gene013501:CDS | 30.0% | |
| ATCAAATGAATACCACCAAA+GGG | - | chr3.4:84765472-84765491 | None:intergenic | 30.0% | |
| ATGGAATAGAGTTAAGTTCA+GGG | - | chr3.4:84765096-84765115 | None:intergenic | 30.0% | |
| CACAGGTATGAAATAAAGAA+GGG | + | chr3.4:84766174-84766193 | MS.gene013501:CDS | 30.0% | |
| GAAAATGAAAACGGAAAAAG+TGG | - | chr3.4:84764868-84764887 | None:intergenic | 30.0% | |
| GAAATAAAGAAGGGTTTAAG+GGG | + | chr3.4:84766183-84766202 | MS.gene013501:CDS | 30.0% | |
| TACAATTTCTCAAGGAATGT+GGG | + | chr3.4:84765767-84765786 | MS.gene013501:CDS | 30.0% | |
| TCAGTAAGAACTCTAATTCT+AGG | - | chr3.4:84765544-84765563 | None:intergenic | 30.0% | |
| TCCTAGAATACAATTTCTCA+AGG | + | chr3.4:84765759-84765778 | MS.gene013501:CDS | 30.0% | |
| TCCTTGAGAAATTGTATTCT+AGG | - | chr3.4:84765763-84765782 | None:intergenic | 30.0% | |
| TGAACTTAACTCTATTCCAT+TGG | + | chr3.4:84765096-84765115 | MS.gene013501:CDS | 30.0% | |
| TGGGTATAAATATAGGACTA+AGG | + | chr3.4:84765894-84765913 | MS.gene013501:CDS | 30.0% | |
| ! | GGAAACCCAGATAAATTTTT+CGG | - | chr3.4:84765313-84765332 | None:intergenic | 30.0% |
| ! | TTGGGTTTTTGATCAAGATT+GGG | + | chr3.4:84765875-84765894 | MS.gene013501:CDS | 30.0% |
| AAACGGAAAAAGTGGTTGTT+TGG | - | chr3.4:84764860-84764879 | None:intergenic | 35.0% | |
| AATAAAGAAGGGTTTAAGGG+GGG | + | chr3.4:84766185-84766204 | MS.gene013501:CDS | 35.0% | |
| AGAGAAGTTTGATTACCGAA+TGG | - | chr3.4:84764941-84764960 | None:intergenic | 35.0% | |
| AGAGTTCTTACTGAGTTAAG+TGG | + | chr3.4:84765550-84765569 | MS.gene013501:CDS | 35.0% | |
| GATTTCTTAAAACCCTTTGG+TGG | + | chr3.4:84765457-84765476 | MS.gene013501:CDS | 35.0% | |
| GCACAGGTATGAAATAAAGA+AGG | + | chr3.4:84766173-84766192 | MS.gene013501:CDS | 35.0% | |
| TACATTAGCGAATGCATGTA+AGG | - | chr3.4:84764982-84765001 | None:intergenic | 35.0% | |
| TGAGCCTATTCTTGAACTAT+GGG | + | chr3.4:84765977-84765996 | MS.gene013501:CDS | 35.0% | |
| TGATTATACTGCAGTATCTG+AGG | - | chr3.4:84766042-84766061 | None:intergenic | 35.0% | |
| TGGAATAGAGTTAAGTTCAG+GGG | - | chr3.4:84765095-84765114 | None:intergenic | 35.0% | |
| TTATAGTGTGGAACATCTTG+AGG | + | chr3.4:84765627-84765646 | MS.gene013501:CDS | 35.0% | |
| TTCAGTGACTAAGTGATTGA+TGG | - | chr3.4:84765176-84765195 | None:intergenic | 35.0% | |
| ! | ATGTGGAGAATTTGATGGAT+AGG | - | chr3.4:84764762-84764781 | None:intergenic | 35.0% |
| ! | CTTGGGTTTTTGATCAAGAT+TGG | + | chr3.4:84765874-84765893 | MS.gene013501:CDS | 35.0% |
| ! | TAAGATTGTGTTGGTGTTTC+CGG | + | chr3.4:84765702-84765721 | MS.gene013501:CDS | 35.0% |
| ! | TGTGGAGAATTTGATGGATA+GGG | - | chr3.4:84764761-84764780 | None:intergenic | 35.0% |
| ! | TTGATGACAGAATTAAGCAC+AGG | + | chr3.4:84766157-84766176 | MS.gene013501:CDS | 35.0% |
| AAAACCCAAGCTTATACGCA+AGG | - | chr3.4:84765864-84765883 | None:intergenic | 40.0% | |
| AGCTTGTATCCAAGAAATGC+AGG | - | chr3.4:84766138-84766157 | None:intergenic | 40.0% | |
| AGGGTTGAGTTTGAAGATGA+GGG | - | chr3.4:84764808-84764827 | None:intergenic | 40.0% | |
| AGTTTGAAGATGAGGGGAAA+GGG | - | chr3.4:84764801-84764820 | None:intergenic | 40.0% | |
| CTGTGAGAATATGCAGAAGA+TGG | + | chr3.4:84765954-84765973 | MS.gene013501:CDS | 40.0% | |
| GTGAGCCTATTCTTGAACTA+TGG | + | chr3.4:84765976-84765995 | MS.gene013501:CDS | 40.0% | |
| GTGGAGATGAGGATAGTATT+GGG | + | chr3.4:84765572-84765591 | MS.gene013501:CDS | 40.0% | |
| GTTCTTACTGAGTTAAGTGG+TGG | + | chr3.4:84765553-84765572 | MS.gene013501:CDS | 40.0% | |
| TCGTGACATTCAAGAGTTAC+TGG | + | chr3.4:84766107-84766126 | MS.gene013501:CDS | 40.0% | |
| TGGAGGGTCGAAAATGAAAA+CGG | - | chr3.4:84764877-84764896 | None:intergenic | 40.0% | |
| TTGAGAAATCGAAGCTGAAG+CGG | + | chr3.4:84765269-84765288 | MS.gene013501:CDS | 40.0% | |
| TTTATCTGGGTTTCCTCAGA+AGG | + | chr3.4:84765318-84765337 | MS.gene013501:CDS | 40.0% | |
| ! | AAAAAGTGGTTGTTTGGTGG+TGG | - | chr3.4:84764854-84764873 | None:intergenic | 40.0% |
| ! | CTGGATTTTCCTGCATTTCT+TGG | + | chr3.4:84766126-84766145 | MS.gene013501:CDS | 40.0% |
| ! | GAAGATGGAGTACTTGATAG+AGG | + | chr3.4:84766077-84766096 | MS.gene013501:CDS | 40.0% |
| ! | GTTCGATTGCTTGTTGATAG+TGG | + | chr3.4:84765340-84765359 | MS.gene013501:CDS | 40.0% |
| ! | GTTTCAAGTGAGAACTTCAC+TGG | + | chr3.4:84766237-84766256 | MS.gene013501:CDS | 40.0% |
| !! | GTATTGGGAAAGTGCTGAAT+AGG | + | chr3.4:84765587-84765606 | MS.gene013501:CDS | 40.0% |
| ACAAGCAATCGAACCTTCTG+AGG | - | chr3.4:84765334-84765353 | None:intergenic | 45.0% | |
| AGTAACTACTACAGCGGCAA+CGG | - | chr3.4:84764901-84764920 | None:intergenic | 45.0% | |
| CGAACCTTGCGTATAAGCTT+GGG | + | chr3.4:84765857-84765876 | MS.gene013501:CDS | 45.0% | |
| CGATCACGCAATGAATCCAA+TGG | - | chr3.4:84765115-84765134 | None:intergenic | 45.0% | |
| CGGAAAAAGTGGTTGTTTGG+TGG | - | chr3.4:84764857-84764876 | None:intergenic | 45.0% | |
| CGGGAATGTGGAGAATTTGA+TGG | - | chr3.4:84764767-84764786 | None:intergenic | 45.0% | |
| CTGCTACTGGTAAAGATAGC+CGG | - | chr3.4:84765724-84765743 | None:intergenic | 45.0% | |
| GAGGGTTGAGTTTGAAGATG+AGG | - | chr3.4:84764809-84764828 | None:intergenic | 45.0% | |
| GAGTTTGAAGATGAGGGGAA+AGG | - | chr3.4:84764802-84764821 | None:intergenic | 45.0% | |
| GCTCAAAAACAACGCTGCTT+TGG | - | chr3.4:84765824-84765843 | None:intergenic | 45.0% | |
| GGGTTGAGTTTGAAGATGAG+GGG | - | chr3.4:84764807-84764826 | None:intergenic | 45.0% | |
| GGTGGAGATGAGGATAGTAT+TGG | + | chr3.4:84765571-84765590 | MS.gene013501:CDS | 45.0% | |
| TAGGACTAAGGAGTTAGCAG+TGG | + | chr3.4:84765906-84765925 | MS.gene013501:CDS | 45.0% | |
| TCTTTACCAGTAGCAGAGAG+AGG | + | chr3.4:84765728-84765747 | MS.gene013501:CDS | 45.0% | |
| TGTAGTAGTTACTCCCCCAA+TGG | + | chr3.4:84764908-84764927 | MS.gene013501:CDS | 45.0% | |
| TGTCGAAGGCGATTTGTCAT+AGG | + | chr3.4:84765407-84765426 | MS.gene013501:CDS | 45.0% | |
| ! | CTCCATCTTCTTCTCTAGAG+AGG | - | chr3.4:84766067-84766086 | None:intergenic | 45.0% |
| ! | TGAGTTAAGTGGTGGAGATG+AGG | + | chr3.4:84765561-84765580 | MS.gene013501:CDS | 45.0% |
| ! | TGATTTGGCGAGGAAGGAAA+AGG | - | chr3.4:84764831-84764850 | None:intergenic | 45.0% |
| ! | TGCCTCTCTAGAGAAGAAGA+TGG | + | chr3.4:84766062-84766081 | MS.gene013501:CDS | 45.0% |
| !! | GTTGTTTGGTGGTGGTGATT+TGG | - | chr3.4:84764846-84764865 | None:intergenic | 45.0% |
| AAGATGAGGGGAAAGGGTTG+AGG | - | chr3.4:84764795-84764814 | None:intergenic | 50.0% | |
| ACCGAATGGCACATTGCCAT+TGG | - | chr3.4:84764927-84764946 | None:intergenic | 50.0% | |
| AGATGAGGGGAAAGGGTTGA+GGG | - | chr3.4:84764794-84764813 | None:intergenic | 50.0% | |
| CAGTTTCCTCTCTCTGCTAC+TGG | - | chr3.4:84765737-84765756 | None:intergenic | 50.0% | |
| CCGAATGGCACATTGCCATT+GGG | - | chr3.4:84764926-84764945 | None:intergenic | 50.0% | |
| CGAATGGCACATTGCCATTG+GGG | - | chr3.4:84764925-84764944 | None:intergenic | 50.0% | |
| GAATGGCACATTGCCATTGG+GGG | - | chr3.4:84764924-84764943 | None:intergenic | 50.0% | |
| GCGAACCTTGCGTATAAGCT+TGG | + | chr3.4:84765856-84765875 | MS.gene013501:CDS | 50.0% | |
| GCTTATACGCAAGGTTCGCA+CGG | - | chr3.4:84765855-84765874 | None:intergenic | 50.0% | |
| TGGGGGAGTAACTACTACAG+CGG | - | chr3.4:84764907-84764926 | None:intergenic | 50.0% | |
| TTGGCGAGGAAGGAAAAGGA+GGG | - | chr3.4:84764827-84764846 | None:intergenic | 50.0% | |
| TTTGGCGAGGAAGGAAAAGG+AGG | - | chr3.4:84764828-84764847 | None:intergenic | 50.0% | |
| ! | CCCAATGGCAATGTGCCATT+CGG | + | chr3.4:84764923-84764942 | MS.gene013501:CDS | 50.0% |
| ACTACTACAGCGGCAACGGA+TGG | - | chr3.4:84764897-84764916 | None:intergenic | 55.0% | |
| GGAAAGGGTTGAGGGTGAAC+GGG | - | chr3.4:84764786-84764805 | None:intergenic | 55.0% | |
| GGGAAAGGGTTGAGGGTGAA+CGG | - | chr3.4:84764787-84764806 | None:intergenic | 55.0% | |
| GTTGAGGGTGAACGGGAATG+TGG | - | chr3.4:84764779-84764798 | None:intergenic | 55.0% | |
| ! | TGGTGGTGATTTGGCGAGGA+AGG | - | chr3.4:84764837-84764856 | None:intergenic | 55.0% |
| !! | TTGGTGGTGGTGATTTGGCG+AGG | - | chr3.4:84764841-84764860 | None:intergenic | 55.0% |
| ACTACAGCGGCAACGGATGG+AGG | - | chr3.4:84764894-84764913 | None:intergenic | 60.0% | |
| CTACAGCGGCAACGGATGGA+GGG | - | chr3.4:84764893-84764912 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 84764707 | 84766302 | 84764707 | ID=MS.gene013501 |
| chr3.4 | mRNA | 84764707 | 84766302 | 84764707 | ID=MS.gene013501.t1;Parent=MS.gene013501 |
| chr3.4 | exon | 84764707 | 84764944 | 84764707 | ID=MS.gene013501.t1.exon1;Parent=MS.gene013501.t1 |
| chr3.4 | CDS | 84764707 | 84764944 | 84764707 | ID=cds.MS.gene013501.t1;Parent=MS.gene013501.t1 |
| chr3.4 | exon | 84765023 | 84766302 | 84765023 | ID=MS.gene013501.t1.exon2;Parent=MS.gene013501.t1 |
| chr3.4 | CDS | 84765023 | 84766302 | 84765023 | ID=cds.MS.gene013501.t1;Parent=MS.gene013501.t1 |
| Gene Sequence |
| Protein sequence |
