Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013515.t1 | XP_024636596.1 | 74.3 | 651 | 31 | 3 | 1 | 518 | 1 | 648 | 3.20E-256 | 894 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013515.t1 | Q9SZL7 | 31.9 | 216 | 139 | 3 | 210 | 422 | 251 | 461 | 3.8e-24 | 114.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013515.t1 | A0A2K3L9Y4 | 42.7 | 701 | 148 | 5 | 52 | 507 | 1 | 692 | 1.5e-125 | 459.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013515.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013515.t1 | MTR_0734s0010 | 58.824 | 187 | 76 | 1 | 325 | 511 | 1 | 186 | 1.78e-66 | 213 |
| MS.gene013515.t1 | MTR_1g019850 | 54.891 | 184 | 69 | 3 | 1 | 183 | 28 | 198 | 1.72e-54 | 183 |
| MS.gene013515.t1 | MTR_0853s0010 | 58.904 | 146 | 60 | 0 | 36 | 181 | 13 | 158 | 3.23e-54 | 180 |
| MS.gene013515.t1 | MTR_1g033820 | 85.915 | 71 | 10 | 0 | 22 | 92 | 1 | 71 | 1.49e-37 | 133 |
| MS.gene013515.t1 | MTR_2g024230 | 50.000 | 108 | 48 | 2 | 1 | 107 | 47 | 149 | 5.92e-24 | 98.6 |
| MS.gene013515.t1 | MTR_6g048540 | 38.095 | 105 | 64 | 1 | 333 | 436 | 106 | 210 | 2.45e-13 | 70.1 |
| MS.gene013515.t1 | MTR_6g048540 | 44.706 | 85 | 47 | 0 | 33 | 117 | 13 | 97 | 2.82e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013515.t1 | AT4G38170 | 39.333 | 150 | 90 | 1 | 214 | 362 | 255 | 404 | 4.55e-30 | 124 |
| MS.gene013515.t1 | AT4G38180 | 32.812 | 192 | 129 | 0 | 208 | 399 | 484 | 675 | 9.42e-29 | 121 |
| MS.gene013515.t1 | AT4G38180 | 28.488 | 172 | 110 | 4 | 23 | 186 | 47 | 213 | 5.54e-12 | 68.9 |
| MS.gene013515.t1 | AT2G27110 | 33.758 | 157 | 104 | 0 | 214 | 370 | 290 | 446 | 1.89e-27 | 117 |
| MS.gene013515.t1 | AT2G27110 | 33.333 | 168 | 110 | 1 | 206 | 371 | 425 | 592 | 1.99e-27 | 117 |
| MS.gene013515.t1 | AT2G27110 | 33.333 | 168 | 110 | 1 | 206 | 371 | 425 | 592 | 1.99e-27 | 117 |
| MS.gene013515.t1 | AT4G15090 | 35.811 | 148 | 92 | 3 | 214 | 360 | 466 | 611 | 1.08e-20 | 96.7 |
| MS.gene013515.t1 | AT4G15090 | 35.811 | 148 | 92 | 3 | 214 | 360 | 466 | 611 | 1.08e-20 | 96.7 |
| MS.gene013515.t1 | AT4G15090 | 35.811 | 148 | 92 | 3 | 214 | 360 | 466 | 611 | 1.08e-20 | 96.7 |
| MS.gene013515.t1 | AT4G15090 | 35.811 | 148 | 92 | 3 | 214 | 360 | 466 | 611 | 1.08e-20 | 96.7 |
| MS.gene013515.t1 | AT4G15090 | 35.811 | 148 | 92 | 3 | 214 | 360 | 466 | 611 | 1.08e-20 | 96.7 |
| MS.gene013515.t1 | AT3G06250 | 34.028 | 144 | 95 | 0 | 214 | 357 | 560 | 703 | 1.59e-19 | 92.8 |
| MS.gene013515.t1 | AT3G06250 | 34.028 | 144 | 95 | 0 | 214 | 357 | 560 | 703 | 1.59e-19 | 92.8 |
| MS.gene013515.t1 | AT3G06250 | 34.028 | 144 | 95 | 0 | 214 | 357 | 560 | 703 | 1.59e-19 | 92.8 |
| MS.gene013515.t1 | AT5G18960 | 29.327 | 208 | 132 | 3 | 214 | 413 | 584 | 784 | 8.76e-19 | 90.5 |
| MS.gene013515.t1 | AT5G18960 | 29.327 | 208 | 132 | 3 | 214 | 413 | 584 | 784 | 8.76e-19 | 90.5 |
| MS.gene013515.t1 | AT3G22170 | 31.944 | 144 | 97 | 1 | 214 | 357 | 475 | 617 | 5.44e-17 | 84.7 |
| MS.gene013515.t1 | AT3G22170 | 31.944 | 144 | 97 | 1 | 214 | 357 | 475 | 617 | 5.44e-17 | 84.7 |
| MS.gene013515.t1 | AT2G32250 | 29.167 | 144 | 97 | 3 | 214 | 355 | 410 | 550 | 1.29e-16 | 83.6 |
| MS.gene013515.t1 | AT2G32250 | 29.167 | 144 | 97 | 3 | 214 | 355 | 410 | 550 | 1.29e-16 | 83.6 |
| MS.gene013515.t1 | AT2G32250 | 29.167 | 144 | 97 | 3 | 214 | 355 | 410 | 550 | 1.40e-16 | 83.6 |
| MS.gene013515.t1 | AT2G32250 | 29.167 | 144 | 97 | 3 | 214 | 355 | 410 | 550 | 1.40e-16 | 83.6 |
| MS.gene013515.t1 | AT2G32250 | 29.167 | 144 | 97 | 3 | 214 | 355 | 410 | 550 | 1.40e-16 | 83.6 |
| MS.gene013515.t1 | AT2G32250 | 29.167 | 144 | 97 | 3 | 214 | 355 | 369 | 509 | 1.51e-16 | 83.6 |
| MS.gene013515.t1 | AT2G32250 | 29.167 | 144 | 97 | 3 | 214 | 355 | 369 | 509 | 1.64e-16 | 83.2 |
| MS.gene013515.t1 | AT2G32250 | 29.167 | 144 | 97 | 3 | 214 | 355 | 410 | 550 | 1.70e-16 | 83.2 |
| MS.gene013515.t1 | AT4G19990 | 27.103 | 214 | 107 | 6 | 192 | 357 | 346 | 558 | 4.10e-16 | 82.0 |
| MS.gene013515.t1 | AT4G19990 | 27.103 | 214 | 107 | 6 | 192 | 357 | 346 | 558 | 4.10e-16 | 82.0 |
| MS.gene013515.t1 | AT4G19990 | 27.103 | 214 | 107 | 6 | 192 | 357 | 346 | 558 | 4.92e-16 | 81.6 |
| MS.gene013515.t1 | AT4G19990 | 27.103 | 214 | 107 | 6 | 192 | 357 | 346 | 558 | 5.01e-16 | 81.6 |
| MS.gene013515.t1 | AT4G19990 | 27.103 | 214 | 107 | 6 | 192 | 357 | 346 | 558 | 5.01e-16 | 81.6 |
| MS.gene013515.t1 | AT4G19990 | 27.103 | 214 | 107 | 6 | 192 | 357 | 289 | 501 | 5.07e-16 | 81.6 |
| MS.gene013515.t1 | AT4G19990 | 27.103 | 214 | 107 | 6 | 192 | 357 | 360 | 572 | 5.59e-16 | 81.6 |
| MS.gene013515.t1 | AT1G76320 | 29.167 | 144 | 99 | 1 | 214 | 357 | 403 | 543 | 2.67e-15 | 79.3 |
| MS.gene013515.t1 | AT1G76320 | 29.167 | 144 | 99 | 1 | 214 | 357 | 403 | 543 | 2.72e-15 | 79.3 |
| MS.gene013515.t1 | AT1G76320 | 29.167 | 144 | 99 | 1 | 214 | 357 | 403 | 543 | 2.72e-15 | 79.3 |
| MS.gene013515.t1 | AT1G76320 | 29.167 | 144 | 99 | 1 | 214 | 357 | 403 | 543 | 3.98e-15 | 79.0 |
| MS.gene013515.t1 | AT1G52520 | 31.373 | 153 | 93 | 5 | 214 | 356 | 486 | 636 | 4.52e-12 | 69.3 |
| MS.gene013515.t1 | AT1G80010 | 26.289 | 194 | 123 | 6 | 181 | 368 | 491 | 670 | 4.74e-11 | 65.9 |
Find 79 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCTGAATTTGATGAATA+TGG | 0.168278 | 3.4:-84564818 | MS.gene013515:CDS |
| TCTTCGGTGTCATAAGAAAA+TGG | 0.202449 | 3.4:-84566157 | MS.gene013515:CDS |
| CGAAGATAATTCACACTCTT+AGG | 0.222243 | 3.4:+84566174 | None:intergenic |
| GAATTCCTTAACATCATTAA+TGG | 0.240357 | 3.4:+84566464 | None:intergenic |
| GATATCAATTCGTGTAAAAT+TGG | 0.255224 | 3.4:+84564698 | None:intergenic |
| TGTTGTATGTTTACCTTCAT+TGG | 0.260845 | 3.4:+84566362 | None:intergenic |
| GATTAGTTATCCCATCTTCT+AGG | 0.265173 | 3.4:+84566592 | None:intergenic |
| AGAAGAATGCAGTGTTTCTA+TGG | 0.279214 | 3.4:-84566325 | MS.gene013515:CDS |
| GGCCATGCTCTCCACATAAT+TGG | 0.297552 | 3.4:+84564411 | None:intergenic |
| ACAGATTCTTCAATTCAAAA+AGG | 0.312019 | 3.4:-84565077 | MS.gene013515:CDS |
| TTTGCTAAGAAAGAAGGTTT+TGG | 0.316303 | 3.4:-84566432 | MS.gene013515:CDS |
| CGCTTTAAAATATAATTACT+TGG | 0.319121 | 3.4:+84564863 | None:intergenic |
| TAACACCATTAATGATGTTA+AGG | 0.352185 | 3.4:-84566469 | MS.gene013515:CDS |
| ATAATAGATTGGCTTGAGTA+TGG | 0.358918 | 3.4:+84564741 | None:intergenic |
| ATTTATACGAGAACCATGTT+TGG | 0.382867 | 3.4:-84565121 | MS.gene013515:CDS |
| CCAATACGAGGATGAAGATT+AGG | 0.407786 | 3.4:+84566501 | None:intergenic |
| GTTCTGAATTTGATGAATAT+GGG | 0.408189 | 3.4:-84564817 | MS.gene013515:CDS |
| GTGACGATTCTATTGATTGA+TGG | 0.414006 | 3.4:-84564358 | None:intergenic |
| CTGATTCGCCTTCAAATCAT+AGG | 0.416814 | 3.4:+84565420 | None:intergenic |
| TTTAGTCGCCTATGATTTGA+AGG | 0.425041 | 3.4:-84565428 | MS.gene013515:CDS |
| CCTAATCTTCATCCTCGTAT+TGG | 0.427152 | 3.4:-84566501 | MS.gene013515:CDS |
| ATATCATTTGCTAAGAAAGA+AGG | 0.435059 | 3.4:-84566438 | MS.gene013515:CDS |
| AATATTATGCAGACATATCT+TGG | 0.435991 | 3.4:-84564918 | MS.gene013515:CDS |
| TGCAAGATCAGATAATAGAT+TGG | 0.455726 | 3.4:+84564730 | None:intergenic |
| AAGGCGAATCAGTGGCTTCA+AGG | 0.459176 | 3.4:-84565409 | MS.gene013515:intron |
| CTTCGGTGTCATAAGAAAAT+GGG | 0.460080 | 3.4:-84566156 | MS.gene013515:CDS |
| AAGCATGGAAGAGGAGCAAA+TGG | 0.460916 | 3.4:-84566242 | MS.gene013515:CDS |
| TAATTGGCAACTTCTCCTCT+TGG | 0.469730 | 3.4:+84564427 | None:intergenic |
| TACTTAGTGTTTCAAAAGCA+TGG | 0.470286 | 3.4:-84566257 | MS.gene013515:CDS |
| TGAAGGGCTTTCTAAACCAT+TGG | 0.470387 | 3.4:+84566563 | None:intergenic |
| GTTGCTGAAATGTTCAATAG+TGG | 0.473232 | 3.4:-84566075 | MS.gene013515:CDS |
| GTTGAGAAGTTTGATGAGGA+GGG | 0.482885 | 3.4:-84566114 | MS.gene013515:CDS |
| GAAGATAATTCACACTCTTA+GGG | 0.487256 | 3.4:+84566175 | None:intergenic |
| ACTATTACAAACCTAGAAGA+TGG | 0.487725 | 3.4:-84566603 | MS.gene013515:CDS |
| TGCTGAACTGTTGTTCTCAA+AGG | 0.492640 | 3.4:+84564784 | None:intergenic |
| TTGGACAAAAGATGCTATCA+AGG | 0.497482 | 3.4:-84564840 | MS.gene013515:CDS |
| GTCTCGAGAGTCATAACAGC+TGG | 0.504783 | 3.4:+84565012 | None:intergenic |
| CTAAGAGTGTGAATTATCTT+CGG | 0.508593 | 3.4:-84566173 | MS.gene013515:CDS |
| GTGGAGAGCATGGCCACAAT+CGG | 0.509901 | 3.4:-84564403 | MS.gene013515:CDS |
| GTTTGCAACTACGCCGATTG+TGG | 0.519437 | 3.4:+84564390 | None:intergenic |
| AGAAAATGGGTATGCCAGCT+AGG | 0.521369 | 3.4:-84566143 | MS.gene013515:CDS |
| ACACTTGTATGTTCCAATGA+AGG | 0.524886 | 3.4:-84566375 | MS.gene013515:CDS |
| CCATGTGGTTCACAAACTAA+AGG | 0.524967 | 3.4:-84564530 | MS.gene013515:CDS |
| AATTCAACAGATACGTTCAA+TGG | 0.528080 | 3.4:+84564566 | None:intergenic |
| GTGTTTCAAAAGCATGGAAG+AGG | 0.528126 | 3.4:-84566251 | MS.gene013515:CDS |
| TGTTGAGAAGTTTGATGAGG+AGG | 0.530228 | 3.4:-84566115 | MS.gene013515:CDS |
| TCATCTCATGAGACTAATGA+TGG | 0.537509 | 3.4:-84566531 | MS.gene013515:CDS |
| CCTTTAGTTTGTGAACCACA+TGG | 0.540341 | 3.4:+84564530 | None:intergenic |
| TCTTCATCCTCGTATTGGAA+TGG | 0.541479 | 3.4:-84566496 | MS.gene013515:CDS |
| GATGAGGAGGGAATACCTAC+AGG | 0.553328 | 3.4:-84566102 | MS.gene013515:CDS |
| GAAGAATGCAGTGTTTCTAT+GGG | 0.555346 | 3.4:-84566324 | MS.gene013515:CDS |
| AGTGAAATTTGACAAGGCAG+TGG | 0.556816 | 3.4:-84565242 | MS.gene013515:CDS |
| TTACACGAATTGATATCAGA+TGG | 0.557896 | 3.4:-84564692 | MS.gene013515:CDS |
| ATTTCAGCAACCTTTCCTGT+AGG | 0.558570 | 3.4:+84566087 | None:intergenic |
| ATAACTAATCACATTTCCAA+TGG | 0.559708 | 3.4:-84566579 | MS.gene013515:CDS |
| AGGAGAAGTTGCCAATTATG+TGG | 0.565187 | 3.4:-84564422 | MS.gene013515:CDS |
| TCGAGACACATTCATTGTCC+AGG | 0.566462 | 3.4:-84564996 | MS.gene013515:CDS |
| TCTTGTTGAGAAGTTTGATG+AGG | 0.573144 | 3.4:-84566118 | MS.gene013515:CDS |
| ATCATGAAACTTTCCAAACA+TGG | 0.583792 | 3.4:+84565108 | None:intergenic |
| TGCCAATTATGTGGAGAGCA+TGG | 0.585622 | 3.4:-84564413 | MS.gene013515:CDS |
| TTCTGAATTTGATGAATATG+GGG | 0.590277 | 3.4:-84564816 | MS.gene013515:CDS |
| CTATTACAAACCTAGAAGAT+GGG | 0.593537 | 3.4:-84566602 | MS.gene013515:CDS |
| TTCTCAACAAGACTCCTAGC+TGG | 0.594039 | 3.4:+84566129 | None:intergenic |
| GACTTCTAGAACTGATTGCA+AGG | 0.598075 | 3.4:-84566283 | MS.gene013515:CDS |
| ATGATTTGAAGGCGAATCAG+TGG | 0.617065 | 3.4:-84565417 | MS.gene013515:CDS |
| CCAGGTGGATCTTGACACAA+AGG | 0.622738 | 3.4:-84564978 | MS.gene013515:CDS |
| GCAATCAGTTCTAGAAGTCG+AGG | 0.627939 | 3.4:+84566287 | None:intergenic |
| TGAATTTGATGAATATGGGG+CGG | 0.630456 | 3.4:-84564813 | MS.gene013515:CDS |
| GCTGAAATGTTCAATAGTGG+AGG | 0.633797 | 3.4:-84566072 | MS.gene013515:intron |
| GGAGGGAATACCTACAGGAA+AGG | 0.657144 | 3.4:-84566097 | MS.gene013515:CDS |
| TGGACAAAAGATGCTATCAA+GGG | 0.663676 | 3.4:-84564839 | MS.gene013515:CDS |
| TAATACTTGAGAGACGTGAT+CGG | 0.666164 | 3.4:+84565173 | None:intergenic |
| CCTTTGTGTCAAGATCCACC+TGG | 0.680465 | 3.4:+84564978 | None:intergenic |
| TAACTCGATCACAAGCCAAG+AGG | 0.682824 | 3.4:-84564442 | MS.gene013515:CDS |
| AATTCGAACTCGTACAACCA+AGG | 0.687037 | 3.4:-84566409 | MS.gene013515:CDS |
| TTAAATTCCATTCCAATACG+AGG | 0.691662 | 3.4:+84566489 | None:intergenic |
| AGACACATTCATTGTCCAGG+TGG | 0.693812 | 3.4:-84564993 | MS.gene013515:CDS |
| TTAGATATTAAAGATCCATG+TGG | 0.721767 | 3.4:-84564545 | MS.gene013515:CDS |
| GTAACAAGAGAGACTCAACA+TGG | 0.750291 | 3.4:-84564494 | MS.gene013515:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATTTCATAAAAAAAATT+TGG | + | chr3.4:84565063-84565082 | None:intergenic | 10.0% |
| !!! | ATAGAATGATAATTTTTTTT+TGG | - | chr3.4:84565097-84565116 | MS.gene013515:CDS | 10.0% |
| !!! | TAGAATGATAATTTTTTTTT+GGG | - | chr3.4:84565098-84565117 | MS.gene013515:CDS | 10.0% |
| !! | AAGGAGAAAATTGAAAAAAA+TGG | - | chr3.4:84565933-84565952 | MS.gene013515:intron | 20.0% |
| !! | AAGTATTAAGTCAAAAATTG+AGG | - | chr3.4:84565833-84565852 | MS.gene013515:intron | 20.0% |
| !! | ATTCTCTTCAAAATCTTTAA+TGG | + | chr3.4:84565532-84565551 | None:intergenic | 20.0% |
| !!! | AAAGTACTTCTGTTATAAAT+AGG | + | chr3.4:84565636-84565655 | None:intergenic | 20.0% |
| !!! | AATGATAATTTTTTTTTGGG+TGG | - | chr3.4:84565101-84565120 | MS.gene013515:CDS | 20.0% |
| !!! | CATTTTCAATCTATCTTATT+TGG | - | chr3.4:84565237-84565256 | MS.gene013515:CDS | 20.0% |
| !!! | CGCTTTAAAATATAATTACT+TGG | + | chr3.4:84566131-84566150 | None:intergenic | 20.0% |
| !!! | GTAATTATATTTTAAAGCGT+TGG | - | chr3.4:84566132-84566151 | MS.gene013515:CDS | 20.0% |
| !!! | TAAAGATTTTGAAGAGAATT+GGG | - | chr3.4:84565533-84565552 | MS.gene013515:intron | 20.0% |
| !!! | TTAAAGATTTTGAAGAGAAT+TGG | - | chr3.4:84565532-84565551 | MS.gene013515:intron | 20.0% |
| ! | AATATTATGCAGACATATCT+TGG | - | chr3.4:84566073-84566092 | MS.gene013515:CDS | 25.0% |
| ! | ACAAACTAAAGGAAGAAAAA+AGG | - | chr3.4:84566472-84566491 | MS.gene013515:CDS | 25.0% |
| ! | ACAGATTCTTCAATTCAAAA+AGG | - | chr3.4:84565914-84565933 | MS.gene013515:intron | 25.0% |
| ! | ATAACTAATCACATTTCCAA+TGG | - | chr3.4:84564412-84564431 | MS.gene013515:CDS | 25.0% |
| ! | GAATTCCTTAACATCATTAA+TGG | + | chr3.4:84564530-84564549 | None:intergenic | 25.0% |
| ! | GATATCAATTCGTGTAAAAT+TGG | + | chr3.4:84566296-84566315 | None:intergenic | 25.0% |
| ! | GTATAAAATAAGAGAGTCAT+GGG | - | chr3.4:84565608-84565627 | MS.gene013515:intron | 25.0% |
| ! | TAAAAAATCACCTTTCAAGA+AGG | - | chr3.4:84565476-84565495 | MS.gene013515:intron | 25.0% |
| ! | TAACACCATTAATGATGTTA+AGG | - | chr3.4:84564522-84564541 | MS.gene013515:CDS | 25.0% |
| ! | TCTTCAAAATCTTTAATGGA+TGG | + | chr3.4:84565528-84565547 | None:intergenic | 25.0% |
| ! | TGTATAAAATAAGAGAGTCA+TGG | - | chr3.4:84565607-84565626 | MS.gene013515:intron | 25.0% |
| ! | TTAGATATTAAAGATCCATG+TGG | - | chr3.4:84566446-84566465 | MS.gene013515:CDS | 25.0% |
| ! | TTCTGAATTTGATGAATATG+GGG | - | chr3.4:84566175-84566194 | MS.gene013515:CDS | 25.0% |
| ! | TTTCATTGACAAATCTTGAT+CGG | + | chr3.4:84565361-84565380 | None:intergenic | 25.0% |
| !! | AAGTGTACAAAAATTTTCCT+TGG | + | chr3.4:84564602-84564621 | None:intergenic | 25.0% |
| !! | ATATCATTTGCTAAGAAAGA+AGG | - | chr3.4:84564553-84564572 | MS.gene013515:CDS | 25.0% |
| !! | GAGATGAAATAACTTTTGAA+GGG | + | chr3.4:84564447-84564466 | None:intergenic | 25.0% |
| !! | GTATATATGTGAAAGCTTTT+CGG | + | chr3.4:84565454-84565473 | None:intergenic | 25.0% |
| !! | GTTCTGAATTTGATGAATAT+GGG | - | chr3.4:84566174-84566193 | MS.gene013515:CDS | 25.0% |
| !! | TGAGATGAAATAACTTTTGA+AGG | + | chr3.4:84564448-84564467 | None:intergenic | 25.0% |
| !! | TTGAATGGTTATTTCAAACA+TGG | - | chr3.4:84565295-84565314 | MS.gene013515:intron | 25.0% |
| !! | TTTTGTAGTGAAATTTGACA+AGG | - | chr3.4:84565743-84565762 | MS.gene013515:intron | 25.0% |
| !!! | TCTTGAAAGGTGATTTTTTA+TGG | + | chr3.4:84565476-84565495 | None:intergenic | 25.0% |
| !!! | TGTCAACTTTTTGAGTTTAT+GGG | - | chr3.4:84566050-84566069 | MS.gene013515:intron | 25.0% |
| !!! | TTGTCAACTTTTTGAGTTTA+TGG | - | chr3.4:84566049-84566068 | MS.gene013515:intron | 25.0% |
| AATTCAACAGATACGTTCAA+TGG | + | chr3.4:84566428-84566447 | None:intergenic | 30.0% | |
| ACTATTACAAACCTAGAAGA+TGG | - | chr3.4:84564388-84564407 | MS.gene013515:CDS | 30.0% | |
| ATCATGAAACTTTCCAAACA+TGG | + | chr3.4:84565886-84565905 | None:intergenic | 30.0% | |
| ATTTATACGAGAACCATGTT+TGG | - | chr3.4:84565870-84565889 | MS.gene013515:intron | 30.0% | |
| CTATTACAAACCTAGAAGAT+GGG | - | chr3.4:84564389-84564408 | MS.gene013515:CDS | 30.0% | |
| GAAGATAATTCACACTCTTA+GGG | + | chr3.4:84564819-84564838 | None:intergenic | 30.0% | |
| GATTTCAATTCCTTCTTGAA+AGG | + | chr3.4:84565489-84565508 | None:intergenic | 30.0% | |
| TACTTAGTGTTTCAAAAGCA+TGG | - | chr3.4:84564734-84564753 | MS.gene013515:CDS | 30.0% | |
| TGCAAGATCAGATAATAGAT+TGG | + | chr3.4:84566264-84566283 | None:intergenic | 30.0% | |
| TGTTGTATGTTTACCTTCAT+TGG | + | chr3.4:84564632-84564651 | None:intergenic | 30.0% | |
| TTAAATTCCATTCCAATACG+AGG | + | chr3.4:84564505-84564524 | None:intergenic | 30.0% | |
| TTACACGAATTGATATCAGA+TGG | - | chr3.4:84566299-84566318 | MS.gene013515:CDS | 30.0% | |
| ! | AACGAGAAGATTTTGAATCA+AGG | - | chr3.4:84565793-84565812 | MS.gene013515:intron | 30.0% |
| ! | CTAAGAGTGTGAATTATCTT+CGG | - | chr3.4:84564818-84564837 | MS.gene013515:CDS | 30.0% |
| ! | GTTATTTCAAACATGGCTAA+AGG | - | chr3.4:84565302-84565321 | MS.gene013515:intron | 30.0% |
| ! | TTTGCTAAGAAAGAAGGTTT+TGG | - | chr3.4:84564559-84564578 | MS.gene013515:CDS | 30.0% |
| !! | ATAATAGATTGGCTTGAGTA+TGG | + | chr3.4:84566253-84566272 | None:intergenic | 30.0% |
| !! | CTCGTTTCTGTTTTTCATAA+CGG | + | chr3.4:84565779-84565798 | None:intergenic | 30.0% |
| !! | CTTTTTCTAGTAGAGATTGT+TGG | - | chr3.4:84564947-84564966 | MS.gene013515:CDS | 30.0% |
| !! | GGTTCTGAATTTGATGAATA+TGG | - | chr3.4:84566173-84566192 | MS.gene013515:CDS | 30.0% |
| !!! | AACAGAAGTACTTTTTTTGC+TGG | - | chr3.4:84565642-84565661 | MS.gene013515:intron | 30.0% |
| !!! | ACAGAAGTACTTTTTTTGCT+GGG | - | chr3.4:84565643-84565662 | MS.gene013515:intron | 30.0% |
| !!! | AGATTGGCTTATAAGGTTTT+TGG | - | chr3.4:84565135-84565154 | MS.gene013515:CDS | 30.0% |
| !!! | CTCGTCAAATTTTTAGAACT+TGG | + | chr3.4:84566401-84566420 | None:intergenic | 30.0% |
| ACACTTGTATGTTCCAATGA+AGG | - | chr3.4:84564616-84564635 | MS.gene013515:CDS | 35.0% | |
| ACCTTAGAAATCTTCGAAGA+AGG | - | chr3.4:84564974-84564993 | MS.gene013515:CDS | 35.0% | |
| ACGAGTATTTGGAAACACAT+TGG | + | chr3.4:84565394-84565413 | None:intergenic | 35.0% | |
| CGAAGAAGGAATCTTGTAAT+TGG | - | chr3.4:84564988-84565007 | MS.gene013515:CDS | 35.0% | |
| CGAAGATAATTCACACTCTT+AGG | + | chr3.4:84564820-84564839 | None:intergenic | 35.0% | |
| GTTGCTGAAATGTTCAATAG+TGG | - | chr3.4:84564916-84564935 | MS.gene013515:CDS | 35.0% | |
| TAATACTTGAGAGACGTGAT+CGG | + | chr3.4:84565821-84565840 | None:intergenic | 35.0% | |
| TCATCTCATGAGACTAATGA+TGG | - | chr3.4:84564460-84564479 | MS.gene013515:CDS | 35.0% | |
| TCCTTCTTCGAAGATTTCTA+AGG | + | chr3.4:84564978-84564997 | None:intergenic | 35.0% | |
| TCTTGTTGAGAAGTTTGATG+AGG | - | chr3.4:84564873-84564892 | MS.gene013515:CDS | 35.0% | |
| TGAATTTGATGAATATGGGG+CGG | - | chr3.4:84566178-84566197 | MS.gene013515:CDS | 35.0% | |
| TGATGATTCAACCCAACAAA+AGG | + | chr3.4:84565219-84565238 | None:intergenic | 35.0% | |
| TGGACAAAAGATGCTATCAA+GGG | - | chr3.4:84566152-84566171 | MS.gene013515:CDS | 35.0% | |
| TTGGACAAAAGATGCTATCA+AGG | - | chr3.4:84566151-84566170 | MS.gene013515:CDS | 35.0% | |
| TTTAGTCGCCTATGATTTGA+AGG | - | chr3.4:84565563-84565582 | MS.gene013515:intron | 35.0% | |
| ! | AGAAGAATGCAGTGTTTCTA+TGG | - | chr3.4:84564666-84564685 | MS.gene013515:CDS | 35.0% |
| ! | AGACAGAGAAGTCTTTTGAA+TGG | - | chr3.4:84565280-84565299 | MS.gene013515:intron | 35.0% |
| ! | GAAGAATGCAGTGTTTCTAT+GGG | - | chr3.4:84564667-84564686 | MS.gene013515:CDS | 35.0% |
| ! | GATTAGTTATCCCATCTTCT+AGG | + | chr3.4:84564402-84564421 | None:intergenic | 35.0% |
| ! | TGGAATGTCGACAACATTTT+TGG | + | chr3.4:84566111-84566130 | None:intergenic | 35.0% |
| !! | AAGATCGAGATTGGCTTATA+AGG | - | chr3.4:84565128-84565147 | MS.gene013515:CDS | 35.0% |
| !! | CTTCGGTGTCATAAGAAAAT+GGG | - | chr3.4:84564835-84564854 | MS.gene013515:CDS | 35.0% |
| !! | TCTTCGGTGTCATAAGAAAA+TGG | - | chr3.4:84564834-84564853 | MS.gene013515:CDS | 35.0% |
| !!! | TTTTTAGAACTTGGCTCTAG+AGG | + | chr3.4:84566392-84566411 | None:intergenic | 35.0% |
| AACCCAACAAAAGGAGCAAA+TGG | + | chr3.4:84565210-84565229 | None:intergenic | 40.0% | |
| AATTCGAACTCGTACAACCA+AGG | - | chr3.4:84564582-84564601 | MS.gene013515:CDS | 40.0% | |
| ACATGGCTAAAGGCAATGAA+TGG | - | chr3.4:84565312-84565331 | MS.gene013515:intron | 40.0% | |
| AGGAGAAGTTGCCAATTATG+TGG | - | chr3.4:84566569-84566588 | MS.gene013515:CDS | 40.0% | |
| AGTGAAATTTGACAAGGCAG+TGG | - | chr3.4:84565749-84565768 | MS.gene013515:intron | 40.0% | |
| ATGATTTGAAGGCGAATCAG+TGG | - | chr3.4:84565574-84565593 | MS.gene013515:intron | 40.0% | |
| ATTTCAGCAACCTTTCCTGT+AGG | + | chr3.4:84564907-84564926 | None:intergenic | 40.0% | |
| CATAATCGGTGACGAGTATT+TGG | + | chr3.4:84565405-84565424 | None:intergenic | 40.0% | |
| CCAATACGAGGATGAAGATT+AGG | + | chr3.4:84564493-84564512 | None:intergenic | 40.0% | |
| CCATGTGGTTCACAAACTAA+AGG | - | chr3.4:84566461-84566480 | MS.gene013515:CDS | 40.0% | |
| CCTAATCTTCATCCTCGTAT+TGG | - | chr3.4:84564490-84564509 | MS.gene013515:CDS | 40.0% | |
| GCTGAAATGTTCAATAGTGG+AGG | - | chr3.4:84564919-84564938 | MS.gene013515:CDS | 40.0% | |
| GTAACAAGAGAGACTCAACA+TGG | - | chr3.4:84566497-84566516 | MS.gene013515:CDS | 40.0% | |
| GTTGAGAAGTTTGATGAGGA+GGG | - | chr3.4:84564877-84564896 | MS.gene013515:CDS | 40.0% | |
| TAATTGGCAACTTCTCCTCT+TGG | + | chr3.4:84566567-84566586 | None:intergenic | 40.0% | |
| TCTTCATCCTCGTATTGGAA+TGG | - | chr3.4:84564495-84564514 | MS.gene013515:CDS | 40.0% | |
| TGAAGGGCTTTCTAAACCAT+TGG | + | chr3.4:84564431-84564450 | None:intergenic | 40.0% | |
| TGATCGGTTATTATCGACAC+AGG | + | chr3.4:84565345-84565364 | None:intergenic | 40.0% | |
| TGCTGAACTGTTGTTCTCAA+AGG | + | chr3.4:84566210-84566229 | None:intergenic | 40.0% | |
| TGTTGAGAAGTTTGATGAGG+AGG | - | chr3.4:84564876-84564895 | MS.gene013515:CDS | 40.0% | |
| ! | AAATGGCATGAGGTACTTGT+TGG | + | chr3.4:84565193-84565212 | None:intergenic | 40.0% |
| ! | CTGATTCGCCTTCAAATCAT+AGG | + | chr3.4:84565574-84565593 | None:intergenic | 40.0% |
| ! | GCTTTTCGGCAAATTTTCTG+CGG | + | chr3.4:84565440-84565459 | None:intergenic | 40.0% |
| ! | GTGTTTCAAAAGCATGGAAG+AGG | - | chr3.4:84564740-84564759 | MS.gene013515:CDS | 40.0% |
| !! | ATGCCATTTGCTCCTTTTGT+TGG | - | chr3.4:84565204-84565223 | MS.gene013515:CDS | 40.0% |
| !! | CCTTTAGTTTGTGAACCACA+TGG | + | chr3.4:84566464-84566483 | None:intergenic | 40.0% |
| !! | GACTTCTAGAACTGATTGCA+AGG | - | chr3.4:84564708-84564727 | MS.gene013515:CDS | 40.0% |
| !! | TGCCATTTGCTCCTTTTGTT+GGG | - | chr3.4:84565205-84565224 | MS.gene013515:CDS | 40.0% |
| !!! | TGTCGACAACATTTTTGGCT+TGG | + | chr3.4:84566106-84566125 | None:intergenic | 40.0% |
| AAGCATGGAAGAGGAGCAAA+TGG | - | chr3.4:84564749-84564768 | MS.gene013515:CDS | 45.0% | |
| AGAAAATGGGTATGCCAGCT+AGG | - | chr3.4:84564848-84564867 | MS.gene013515:CDS | 45.0% | |
| AGACACATTCATTGTCCAGG+TGG | - | chr3.4:84565998-84566017 | MS.gene013515:intron | 45.0% | |
| CAAAAGGAGCAAATGGCATG+AGG | + | chr3.4:84565203-84565222 | None:intergenic | 45.0% | |
| GGATGTGCCACAAGCATAAT+CGG | + | chr3.4:84565419-84565438 | None:intergenic | 45.0% | |
| TAACTCGATCACAAGCCAAG+AGG | - | chr3.4:84566549-84566568 | MS.gene013515:CDS | 45.0% | |
| TCGAGACACATTCATTGTCC+AGG | - | chr3.4:84565995-84566014 | MS.gene013515:intron | 45.0% | |
| TGCCAATTATGTGGAGAGCA+TGG | - | chr3.4:84566578-84566597 | MS.gene013515:CDS | 45.0% | |
| TTCTCAACAAGACTCCTAGC+TGG | + | chr3.4:84564865-84564884 | None:intergenic | 45.0% | |
| !! | GCAATCAGTTCTAGAAGTCG+AGG | + | chr3.4:84564707-84564726 | None:intergenic | 45.0% |
| AAGGCGAATCAGTGGCTTCA+AGG | - | chr3.4:84565582-84565601 | MS.gene013515:intron | 50.0% | |
| CCAGGTGGATCTTGACACAA+AGG | - | chr3.4:84566013-84566032 | MS.gene013515:intron | 50.0% | |
| CCTTTGTGTCAAGATCCACC+TGG | + | chr3.4:84566016-84566035 | None:intergenic | 50.0% | |
| GATGAGGAGGGAATACCTAC+AGG | - | chr3.4:84564889-84564908 | MS.gene013515:CDS | 50.0% | |
| GGAGGGAATACCTACAGGAA+AGG | - | chr3.4:84564894-84564913 | MS.gene013515:CDS | 50.0% | |
| GGCCATGCTCTCCACATAAT+TGG | + | chr3.4:84566583-84566602 | None:intergenic | 50.0% | |
| GGTGGATGCAAGATCGAGAT+TGG | - | chr3.4:84565119-84565138 | MS.gene013515:CDS | 50.0% | |
| GTCTCGAGAGTCATAACAGC+TGG | + | chr3.4:84565982-84566001 | None:intergenic | 50.0% | |
| ! | CTCGTCACCGATTATGCTTG+TGG | - | chr3.4:84565409-84565428 | MS.gene013515:intron | 50.0% |
| ! | GTTTGCAACTACGCCGATTG+TGG | + | chr3.4:84566604-84566623 | None:intergenic | 50.0% |
| ! | GTGGAGAGCATGGCCACAAT+CGG | - | chr3.4:84566588-84566607 | MS.gene013515:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 84564361 | 84566652 | 84564361 | ID=MS.gene013515 |
| chr3.4 | mRNA | 84564361 | 84566652 | 84564361 | ID=MS.gene013515.t1;Parent=MS.gene013515 |
| chr3.4 | exon | 84566073 | 84566652 | 84566073 | ID=MS.gene013515.t1.exon1;Parent=MS.gene013515.t1 |
| chr3.4 | CDS | 84566073 | 84566652 | 84566073 | ID=cds.MS.gene013515.t1;Parent=MS.gene013515.t1 |
| chr3.4 | exon | 84565410 | 84565475 | 84565410 | ID=MS.gene013515.t1.exon2;Parent=MS.gene013515.t1 |
| chr3.4 | CDS | 84565410 | 84565475 | 84565410 | ID=cds.MS.gene013515.t1;Parent=MS.gene013515.t1 |
| chr3.4 | exon | 84564361 | 84565271 | 84564361 | ID=MS.gene013515.t1.exon3;Parent=MS.gene013515.t1 |
| chr3.4 | CDS | 84564361 | 84565271 | 84564361 | ID=cds.MS.gene013515.t1;Parent=MS.gene013515.t1 |
| Gene Sequence |
| Protein sequence |
