Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013577.t1 | AES72521.1 | 60.7 | 303 | 76 | 4 | 1 | 302 | 1 | 261 | 7.20E-91 | 344 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013577.t1 | Q9LVU8 | 53.9 | 102 | 47 | 0 | 195 | 296 | 148 | 249 | 3.8e-24 | 113.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013577.t1 | G7J7G0 | 60.7 | 303 | 76 | 4 | 1 | 302 | 1 | 261 | 5.2e-91 | 344.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013577.t1 | TF | RWP-RK |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013577.t1 | MTR_3g091700 | 64.356 | 303 | 65 | 3 | 1 | 302 | 1 | 261 | 2.77e-136 | 386 |
| MS.gene013577.t1 | MTR_3g435550 | 47.321 | 112 | 53 | 1 | 195 | 300 | 59 | 170 | 4.79e-29 | 110 |
| MS.gene013577.t1 | MTR_5g024070 | 37.719 | 114 | 58 | 1 | 195 | 295 | 201 | 314 | 1.56e-19 | 87.4 |
| MS.gene013577.t1 | MTR_3g091720 | 75.000 | 52 | 6 | 1 | 251 | 302 | 19 | 63 | 1.60e-17 | 75.5 |
| MS.gene013577.t1 | MTR_0140s0010 | 28.333 | 180 | 107 | 6 | 138 | 301 | 65 | 238 | 2.13e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013577.t1 | AT5G53040 | 52.381 | 105 | 50 | 0 | 195 | 299 | 148 | 252 | 2.45e-32 | 120 |
| MS.gene013577.t1 | AT5G66990 | 49.550 | 111 | 45 | 1 | 200 | 299 | 164 | 274 | 1.64e-31 | 119 |
| MS.gene013577.t1 | AT1G18790 | 43.307 | 127 | 55 | 2 | 180 | 296 | 120 | 239 | 9.88e-28 | 108 |
| MS.gene013577.t1 | AT1G74480 | 43.902 | 123 | 52 | 2 | 180 | 292 | 127 | 242 | 1.96e-27 | 108 |
| MS.gene013577.t1 | AT4G35590 | 33.333 | 138 | 72 | 2 | 179 | 296 | 169 | 306 | 1.72e-17 | 81.6 |
| MS.gene013577.t1 | AT4G35590 | 33.333 | 138 | 72 | 2 | 179 | 296 | 219 | 356 | 2.38e-17 | 82.0 |
| MS.gene013577.t1 | AT5G16100 | 34.899 | 149 | 85 | 4 | 134 | 271 | 291 | 438 | 9.23e-13 | 68.6 |
Find 55 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGGTAAAGCAACATTTA+AGG | 0.169846 | 3.4:+83868333 | None:intergenic |
| CATTGCAATTTGATGATATA+AGG | 0.198698 | 3.4:-83868006 | MS.gene013577:CDS |
| TCGGTGTAATGCCCCATTTC+AGG | 0.239025 | 3.4:+83868316 | None:intergenic |
| AAATGTTGCTTTACCTGAAA+TGG | 0.239415 | 3.4:-83868329 | MS.gene013577:CDS |
| TCTTCATTCAATTCCATTTC+AGG | 0.242189 | 3.4:+83867520 | None:intergenic |
| TTGTAGCCTTGAGCGATTTC+AGG | 0.264499 | 3.4:+83868935 | None:intergenic |
| GCCTTGAGCGATTTCAGGTT+GGG | 0.343692 | 3.4:+83868940 | None:intergenic |
| AACTACTTTGATCAAGGTAT+TGG | 0.343714 | 3.4:+83868374 | None:intergenic |
| TCAGGTAAAGCAACATTTAA+GGG | 0.355156 | 3.4:+83868334 | None:intergenic |
| AATGTTGCTTTACCTGAAAT+GGG | 0.356567 | 3.4:-83868328 | MS.gene013577:CDS |
| TTGTGAACAAACAAGAGAAA+TGG | 0.359147 | 3.4:-83868222 | MS.gene013577:CDS |
| GAGTGGATTTGTTGAAGTTT+CGG | 0.364446 | 3.4:-83868158 | MS.gene013577:CDS |
| ATGATTTCATTGAGTTTGAT+TGG | 0.364629 | 3.4:-83868480 | MS.gene013577:CDS |
| GCTTACTTGTCTGTGTTGTT+TGG | 0.372451 | 3.4:+83868887 | None:intergenic |
| AGCAATACTCTTCCCTTTGT+CGG | 0.387658 | 3.4:+83868297 | None:intergenic |
| GTTGAGGCTTCCAAGAAAAC+AGG | 0.393183 | 3.4:-83868262 | MS.gene013577:CDS |
| CCCTGCATCTATTCTTCAAA+AGG | 0.394587 | 3.4:+83867927 | None:intergenic |
| GTTAGAGAAACTTCCTGAAA+TGG | 0.395826 | 3.4:-83867533 | MS.gene013577:CDS |
| TGTTGTGTGATGCAGGAAAT+GGG | 0.433682 | 3.4:-83867598 | MS.gene013577:intron |
| GGCAAACGAGGTTGCTATGA+TGG | 0.435987 | 3.4:-83867572 | MS.gene013577:CDS |
| TGTGAACAAACAAGAGAAAT+GGG | 0.437906 | 3.4:-83868221 | MS.gene013577:CDS |
| TGTACTCATCGACAACCTTA+AGG | 0.442882 | 3.4:-83867858 | MS.gene013577:intron |
| AACTCAATGAAATCATCAAA+TGG | 0.477184 | 3.4:+83868487 | None:intergenic |
| AAATCGCTCAAGGCTACAAC+TGG | 0.479818 | 3.4:-83868931 | MS.gene013577:CDS |
| CTGCTACTTGGCAATGGTAG+TGG | 0.480934 | 3.4:+83868070 | None:intergenic |
| TGATTTCATTGAGTTTGATT+GGG | 0.486276 | 3.4:-83868479 | MS.gene013577:CDS |
| AGGTTGAAGCTCAAGGGTTG+AGG | 0.489859 | 3.4:+83867437 | None:intergenic |
| CTAGTACTAGTACTGCTACT+TGG | 0.498387 | 3.4:+83868058 | None:intergenic |
| TGTGATGCAGGAAATGGGTT+TGG | 0.499818 | 3.4:-83867593 | MS.gene013577:intron |
| TTGTGAAGAAAGAGGTTGAA+GGG | 0.507686 | 3.4:-83868108 | MS.gene013577:CDS |
| GTACTAGTACTAGTATCATA+AGG | 0.510277 | 3.4:-83868042 | MS.gene013577:CDS |
| TCTCAAAACTACTTTGATCA+AGG | 0.511922 | 3.4:+83868368 | None:intergenic |
| CTATGATGGAGAAGAAGAAA+AGG | 0.520048 | 3.4:-83867558 | MS.gene013577:CDS |
| AAGATCATTGAACCACCCAT+TGG | 0.537266 | 3.4:+83868420 | None:intergenic |
| AGCCTTGAGCGATTTCAGGT+TGG | 0.544838 | 3.4:+83868939 | None:intergenic |
| TTTGTGAAGAAAGAGGTTGA+AGG | 0.545050 | 3.4:-83868109 | MS.gene013577:CDS |
| GGTTGAAGCTCAAGGGTTGA+GGG | 0.549829 | 3.4:+83867438 | None:intergenic |
| TGTGAAGAAAGAGGTTGAAG+GGG | 0.555743 | 3.4:-83868107 | MS.gene013577:CDS |
| ATGGGGCATTACACCGACAA+AGG | 0.558093 | 3.4:-83868310 | MS.gene013577:CDS |
| TGGGGCATTACACCGACAAA+GGG | 0.567564 | 3.4:-83868309 | MS.gene013577:CDS |
| GTACTAGTATCATAAGGAAG+AGG | 0.575464 | 3.4:-83868036 | MS.gene013577:CDS |
| CCTGCATCTATTCTTCAAAA+GGG | 0.589493 | 3.4:+83867928 | None:intergenic |
| ACATTGAGTGCTGCTGAGAG+TGG | 0.594289 | 3.4:-83868175 | MS.gene013577:CDS |
| GGGAAGAGTATTGCTGAGAG+TGG | 0.605279 | 3.4:-83868289 | MS.gene013577:CDS |
| GGAAATGGGTTTGGCAAACG+AGG | 0.606744 | 3.4:-83867584 | MS.gene013577:CDS |
| CTAGTACTGCTACTTGGCAA+TGG | 0.610956 | 3.4:+83868064 | None:intergenic |
| ACCCAACCTGAAATCGCTCA+AGG | 0.612787 | 3.4:-83868941 | MS.gene013577:CDS |
| ATGTTGCTTTACCTGAAATG+GGG | 0.616338 | 3.4:-83868327 | MS.gene013577:CDS |
| GCAGGGAGCTCAACATCACT+AGG | 0.620032 | 3.4:-83867910 | MS.gene013577:CDS |
| GGTGGCCTCACAGAAAATTG+AGG | 0.625800 | 3.4:-83867889 | MS.gene013577:CDS |
| ATGAAGAAATCAAGAAGCTG+AGG | 0.626377 | 3.4:-83867504 | MS.gene013577:CDS |
| GCTGCTAAGAAAATGAATGT+TGG | 0.631864 | 3.4:-83867956 | MS.gene013577:CDS |
| GCACTCAATGTCAATGACAA+TGG | 0.653270 | 3.4:+83868187 | None:intergenic |
| AGGTTGGGTGAAGAACTCCA+TGG | 0.704568 | 3.4:+83868955 | None:intergenic |
| GGGAGCTCAACATCACTAGG+TGG | 0.707852 | 3.4:-83867907 | MS.gene013577:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAGTTAAAAAAG+GGG | + | chr3.4:83867851-83867870 | None:intergenic | 10.0% |
| !! | ACAAAAAAAAAAGTTAAAAA+AGG | + | chr3.4:83867853-83867872 | None:intergenic | 10.0% |
| !! | CAAAAAAAAAAGTTAAAAAA+GGG | + | chr3.4:83867852-83867871 | None:intergenic | 10.0% |
| !!! | ATAAATAATTTTTTATCAAC+TGG | - | chr3.4:83868759-83868778 | MS.gene013577:intron | 10.0% |
| !! | AACATAAAGAATATACCTTA+AGG | + | chr3.4:83868560-83868579 | None:intergenic | 20.0% |
| !! | TAAAAATTGAATAAGAACAG+AGG | + | chr3.4:83867652-83867671 | None:intergenic | 20.0% |
| !! | TTTATCTATTACTTTGACTA+TGG | - | chr3.4:83867668-83867687 | MS.gene013577:intron | 20.0% |
| !!! | TTTTGATGTTCCTTTAAAAA+TGG | - | chr3.4:83868422-83868441 | MS.gene013577:CDS | 20.0% |
| ! | AAAGTTAAAAAAGGGGAAAA+CGG | + | chr3.4:83867844-83867863 | None:intergenic | 25.0% |
| ! | AACTCAATGAAATCATCAAA+TGG | + | chr3.4:83867916-83867935 | None:intergenic | 25.0% |
| ! | ATCCAAACAAAGATAATGTT+AGG | + | chr3.4:83868621-83868640 | None:intergenic | 25.0% |
| ! | ATGATTTCATTGAGTTTGAT+TGG | - | chr3.4:83867920-83867939 | MS.gene013577:CDS | 25.0% |
| ! | ATTTCAATTGTCATTCAAAG+TGG | + | chr3.4:83868680-83868699 | None:intergenic | 25.0% |
| ! | GTAAAAAACAGAACAAGTTA+GGG | + | chr3.4:83867630-83867649 | None:intergenic | 25.0% |
| ! | TGATTTCATTGAGTTTGATT+GGG | - | chr3.4:83867921-83867940 | MS.gene013577:CDS | 25.0% |
| ! | TGGTGTAAAAATGATTACTT+TGG | + | chr3.4:83867963-83867982 | None:intergenic | 25.0% |
| ! | TTCCTAACATTATCTTTGTT+TGG | - | chr3.4:83868616-83868635 | MS.gene013577:intron | 25.0% |
| ! | TTTCAATTGTCATTCAAAGT+GGG | + | chr3.4:83868679-83868698 | None:intergenic | 25.0% |
| !! | CATTGCAATTTGATGATATA+AGG | - | chr3.4:83868394-83868413 | MS.gene013577:CDS | 25.0% |
| !! | TTTGAAGTACTTAACAATGT+GGG | + | chr3.4:83868595-83868614 | None:intergenic | 25.0% |
| !! | TTTTAATGTGTACAGAATCA+TGG | - | chr3.4:83867882-83867901 | MS.gene013577:CDS | 25.0% |
| !!! | AGTAATCATTTTTACACCAA+TGG | - | chr3.4:83867964-83867983 | MS.gene013577:CDS | 25.0% |
| !!! | ATTTTTTATCAACTGGTCAT+AGG | - | chr3.4:83868766-83868785 | MS.gene013577:intron | 25.0% |
| !!! | GTAATCATTTTTACACCAAT+GGG | - | chr3.4:83867965-83867984 | MS.gene013577:CDS | 25.0% |
| !!! | TTTTGAAGTACTTAACAATG+TGG | + | chr3.4:83868596-83868615 | None:intergenic | 25.0% |
| AAAGAATGAACATCGAATCA+TGG | + | chr3.4:83867561-83867580 | None:intergenic | 30.0% | |
| AACTACTTTGATCAAGGTAT+TGG | + | chr3.4:83868029-83868048 | None:intergenic | 30.0% | |
| AATCATGGTTGAAATGAAAC+TGG | + | chr3.4:83867546-83867565 | None:intergenic | 30.0% | |
| ATTCATAACAGCCAACAAAA+AGG | + | chr3.4:83868738-83868757 | None:intergenic | 30.0% | |
| GAAACTTGAAACTGTAGTTT+GGG | - | chr3.4:83868707-83868726 | MS.gene013577:intron | 30.0% | |
| GGTAAAAAACAGAACAAGTT+AGG | + | chr3.4:83867631-83867650 | None:intergenic | 30.0% | |
| GTACTAGTACTAGTATCATA+AGG | - | chr3.4:83868358-83868377 | MS.gene013577:CDS | 30.0% | |
| TCAGGTAAAGCAACATTTAA+GGG | + | chr3.4:83868069-83868088 | None:intergenic | 30.0% | |
| TCTCAAAACTACTTTGATCA+AGG | + | chr3.4:83868035-83868054 | None:intergenic | 30.0% | |
| TCTTCATTCAATTCCATTTC+AGG | + | chr3.4:83868883-83868902 | None:intergenic | 30.0% | |
| TGAAACTTGAAACTGTAGTT+TGG | - | chr3.4:83868706-83868725 | MS.gene013577:intron | 30.0% | |
| TGTGAACAAACAAGAGAAAT+GGG | - | chr3.4:83868179-83868198 | MS.gene013577:CDS | 30.0% | |
| TTCAGGTAAAGCAACATTTA+AGG | + | chr3.4:83868070-83868089 | None:intergenic | 30.0% | |
| TTGTGAACAAACAAGAGAAA+TGG | - | chr3.4:83868178-83868197 | MS.gene013577:CDS | 30.0% | |
| ! | TTGAAGTACTTAACAATGTG+GGG | + | chr3.4:83868594-83868613 | None:intergenic | 30.0% |
| !! | AAACTGATTTCCTGTTTTCT+TGG | + | chr3.4:83868151-83868170 | None:intergenic | 30.0% |
| !! | AAATGTTGCTTTACCTGAAA+TGG | - | chr3.4:83868071-83868090 | MS.gene013577:CDS | 30.0% |
| !! | AATGTTGCTTTACCTGAAAT+GGG | - | chr3.4:83868072-83868091 | MS.gene013577:CDS | 30.0% |
| !! | ATTATTTTGTTGTGTGATGC+AGG | - | chr3.4:83868795-83868814 | MS.gene013577:intron | 30.0% |
| !!! | TTCTTAGCAGCCATTTTTAA+AGG | + | chr3.4:83868435-83868454 | None:intergenic | 30.0% |
| AGTTAGGGTGATGTAGATTA+AGG | + | chr3.4:83867615-83867634 | None:intergenic | 35.0% | |
| ATGAAGAAATCAAGAAGCTG+AGG | - | chr3.4:83868896-83868915 | MS.gene013577:CDS | 35.0% | |
| CCTGCATCTATTCTTCAAAA+GGG | + | chr3.4:83868475-83868494 | None:intergenic | 35.0% | |
| GAGCATTAGACTCAAATTGT+AGG | - | chr3.4:83868646-83868665 | MS.gene013577:intron | 35.0% | |
| GCTGCTAAGAAAATGAATGT+TGG | - | chr3.4:83868444-83868463 | MS.gene013577:CDS | 35.0% | |
| GTACTAGTATCATAAGGAAG+AGG | - | chr3.4:83868364-83868383 | MS.gene013577:CDS | 35.0% | |
| GTTAGAGAAACTTCCTGAAA+TGG | - | chr3.4:83868867-83868886 | MS.gene013577:intron | 35.0% | |
| TTGTGAAGAAAGAGGTTGAA+GGG | - | chr3.4:83868292-83868311 | MS.gene013577:CDS | 35.0% | |
| TTTCGGCAAAAACTGAAAGT+GGG | - | chr3.4:83868259-83868278 | MS.gene013577:CDS | 35.0% | |
| TTTGTGAAGAAAGAGGTTGA+AGG | - | chr3.4:83868291-83868310 | MS.gene013577:CDS | 35.0% | |
| ! | AAAAACTGAAAGTGGGTTTG+TGG | - | chr3.4:83868266-83868285 | MS.gene013577:CDS | 35.0% |
| ! | CTATGATGGAGAAGAAGAAA+AGG | - | chr3.4:83868842-83868861 | MS.gene013577:intron | 35.0% |
| ! | TGAAGTACTTAACAATGTGG+GGG | + | chr3.4:83868593-83868612 | None:intergenic | 35.0% |
| ! | TGTGGATTTTGTGAAGAAAG+AGG | - | chr3.4:83868284-83868303 | MS.gene013577:CDS | 35.0% |
| !! | ATCATTTTTACACCAATGGG+TGG | - | chr3.4:83867968-83867987 | MS.gene013577:CDS | 35.0% |
| !! | ATGTTGCTTTACCTGAAATG+GGG | - | chr3.4:83868073-83868092 | MS.gene013577:CDS | 35.0% |
| !! | CCTTTTGAAGAATAGATGCA+GGG | - | chr3.4:83868473-83868492 | MS.gene013577:CDS | 35.0% |
| !! | GAGTGGATTTGTTGAAGTTT+CGG | - | chr3.4:83868242-83868261 | MS.gene013577:CDS | 35.0% |
| AAGATCATTGAACCACCCAT+TGG | + | chr3.4:83867983-83868002 | None:intergenic | 40.0% | |
| AATGTTCCACGCATCATTCT+CGG | + | chr3.4:83867763-83867782 | None:intergenic | 40.0% | |
| ACTTGAAACTGTAGTTTGGG+TGG | - | chr3.4:83868710-83868729 | MS.gene013577:intron | 40.0% | |
| AGCAATACTCTTCCCTTTGT+CGG | + | chr3.4:83868106-83868125 | None:intergenic | 40.0% | |
| ATCAACCTCGAAAGTCGTAA+CGG | + | chr3.4:83867787-83867806 | None:intergenic | 40.0% | |
| CCCTGCATCTATTCTTCAAA+AGG | + | chr3.4:83868476-83868495 | None:intergenic | 40.0% | |
| CTAGTACTAGTACTGCTACT+TGG | + | chr3.4:83868345-83868364 | None:intergenic | 40.0% | |
| GCACTCAATGTCAATGACAA+TGG | + | chr3.4:83868216-83868235 | None:intergenic | 40.0% | |
| GTTTCGGCAAAAACTGAAAG+TGG | - | chr3.4:83868258-83868277 | MS.gene013577:CDS | 40.0% | |
| TAGACTCAAATTGTAGGACC+AGG | - | chr3.4:83868652-83868671 | MS.gene013577:intron | 40.0% | |
| TGTACTCATCGACAACCTTA+AGG | - | chr3.4:83868542-83868561 | MS.gene013577:intron | 40.0% | |
| TGTGAAGAAAGAGGTTGAAG+GGG | - | chr3.4:83868293-83868312 | MS.gene013577:CDS | 40.0% | |
| TGTTGTGTGATGCAGGAAAT+GGG | - | chr3.4:83868802-83868821 | MS.gene013577:intron | 40.0% | |
| TTGTTGTGTGATGCAGGAAA+TGG | - | chr3.4:83868801-83868820 | MS.gene013577:intron | 40.0% | |
| ! | AAGCTCCTCAATTTTCTGTG+AGG | + | chr3.4:83868519-83868538 | None:intergenic | 40.0% |
| ! | GAAGTACTTAACAATGTGGG+GGG | + | chr3.4:83868592-83868611 | None:intergenic | 40.0% |
| ! | GCTTACTTGTCTGTGTTGTT+TGG | + | chr3.4:83867516-83867535 | None:intergenic | 40.0% |
| !! | CCCTTTTGAAGAATAGATGC+AGG | - | chr3.4:83868472-83868491 | MS.gene013577:CDS | 40.0% |
| AAATCGCTCAAGGCTACAAC+TGG | - | chr3.4:83867469-83867488 | MS.gene013577:CDS | 45.0% | |
| GTTGAGGCTTCCAAGAAAAC+AGG | - | chr3.4:83868138-83868157 | MS.gene013577:CDS | 45.0% | |
| TTGTCATTCAAAGTGGGTCC+TGG | + | chr3.4:83868673-83868692 | None:intergenic | 45.0% | |
| ! | CTAGTACTGCTACTTGGCAA+TGG | + | chr3.4:83868339-83868358 | None:intergenic | 45.0% |
| ! | TGTGATGCAGGAAATGGGTT+TGG | - | chr3.4:83868807-83868826 | MS.gene013577:intron | 45.0% |
| ! | TTGTAGCCTTGAGCGATTTC+AGG | + | chr3.4:83867468-83867487 | None:intergenic | 45.0% |
| ! | TTTGGGTGGAGCCTTTTTGT+TGG | - | chr3.4:83868724-83868743 | MS.gene013577:intron | 45.0% |
| !!! | TGCTGAGAGTGGTTTTGTTG+AGG | - | chr3.4:83868122-83868141 | MS.gene013577:CDS | 45.0% |
| ACCCAACCTGAAATCGCTCA+AGG | - | chr3.4:83867459-83867478 | MS.gene013577:CDS | 50.0% | |
| AGTCTTCCGAGAATGATGCG+TGG | - | chr3.4:83867754-83867773 | MS.gene013577:intron | 50.0% | |
| CATTGCCGTTACGACTTTCG+AGG | - | chr3.4:83867779-83867798 | MS.gene013577:intron | 50.0% | |
| GGCAAACGAGGTTGCTATGA+TGG | - | chr3.4:83868828-83868847 | MS.gene013577:intron | 50.0% | |
| GGTGGCCTCACAGAAAATTG+AGG | - | chr3.4:83868511-83868530 | MS.gene013577:intron | 50.0% | |
| TCGGTGTAATGCCCCATTTC+AGG | + | chr3.4:83868087-83868106 | None:intergenic | 50.0% | |
| ! | ACATTGAGTGCTGCTGAGAG+TGG | - | chr3.4:83868225-83868244 | MS.gene013577:CDS | 50.0% |
| ! | AGCCTTGAGCGATTTCAGGT+TGG | + | chr3.4:83867464-83867483 | None:intergenic | 50.0% |
| ! | ATGGGGCATTACACCGACAA+AGG | - | chr3.4:83868090-83868109 | MS.gene013577:CDS | 50.0% |
| ! | CTGCTACTTGGCAATGGTAG+TGG | + | chr3.4:83868333-83868352 | None:intergenic | 50.0% |
| ! | GGAAATGGGTTTGGCAAACG+AGG | - | chr3.4:83868816-83868835 | MS.gene013577:intron | 50.0% |
| ! | TGGGGCATTACACCGACAAA+GGG | - | chr3.4:83868091-83868110 | MS.gene013577:CDS | 50.0% |
| !! | GCCTTGAGCGATTTCAGGTT+GGG | + | chr3.4:83867463-83867482 | None:intergenic | 50.0% |
| !! | GGGAAGAGTATTGCTGAGAG+TGG | - | chr3.4:83868111-83868130 | MS.gene013577:CDS | 50.0% |
| GCAGGGAGCTCAACATCACT+AGG | - | chr3.4:83868490-83868509 | MS.gene013577:CDS | 55.0% | |
| GGGAGCTCAACATCACTAGG+TGG | - | chr3.4:83868493-83868512 | MS.gene013577:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 83867447 | 83868975 | 83867447 | ID=MS.gene013577 |
| chr3.4 | mRNA | 83867447 | 83868975 | 83867447 | ID=MS.gene013577.t1;Parent=MS.gene013577 |
| chr3.4 | exon | 83868893 | 83868975 | 83868893 | ID=MS.gene013577.t1.exon1;Parent=MS.gene013577.t1 |
| chr3.4 | CDS | 83868893 | 83868975 | 83868893 | ID=cds.MS.gene013577.t1;Parent=MS.gene013577.t1 |
| chr3.4 | exon | 83867859 | 83868525 | 83867859 | ID=MS.gene013577.t1.exon2;Parent=MS.gene013577.t1 |
| chr3.4 | CDS | 83867859 | 83868525 | 83867859 | ID=cds.MS.gene013577.t1;Parent=MS.gene013577.t1 |
| chr3.4 | exon | 83867447 | 83867605 | 83867447 | ID=MS.gene013577.t1.exon3;Parent=MS.gene013577.t1 |
| chr3.4 | CDS | 83867447 | 83867605 | 83867447 | ID=cds.MS.gene013577.t1;Parent=MS.gene013577.t1 |
| Gene Sequence |
| Protein sequence |
