Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013578.t1 | AES72521.1 | 87.4 | 270 | 21 | 4 | 1 | 266 | 1 | 261 | 6.70E-125 | 456.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013578.t1 | Q9LVU8 | 39.8 | 201 | 106 | 3 | 71 | 260 | 53 | 249 | 1.2e-26 | 121.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013578.t1 | G7J7G0 | 87.4 | 270 | 21 | 4 | 1 | 266 | 1 | 261 | 4.8e-125 | 456.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013578.t1 | TF | RWP-RK |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013578.t1 | MTR_3g091700 | 87.407 | 270 | 21 | 4 | 1 | 266 | 1 | 261 | 5.41e-172 | 475 |
| MS.gene013578.t1 | MTR_3g435550 | 46.429 | 112 | 54 | 1 | 159 | 264 | 59 | 170 | 6.60e-28 | 106 |
| MS.gene013578.t1 | MTR_5g024070 | 38.400 | 125 | 59 | 2 | 153 | 259 | 190 | 314 | 4.15e-21 | 91.3 |
| MS.gene013578.t1 | MTR_0140s0010 | 47.222 | 72 | 29 | 2 | 189 | 251 | 150 | 221 | 5.62e-13 | 67.0 |
| MS.gene013578.t1 | MTR_3g091720 | 61.538 | 52 | 13 | 1 | 215 | 266 | 19 | 63 | 1.73e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013578.t1 | AT5G53040 | 56.190 | 105 | 46 | 0 | 159 | 263 | 148 | 252 | 6.82e-33 | 121 |
| MS.gene013578.t1 | AT5G66990 | 52.252 | 111 | 42 | 2 | 164 | 263 | 164 | 274 | 8.12e-30 | 113 |
| MS.gene013578.t1 | AT1G18790 | 48.696 | 115 | 49 | 1 | 156 | 260 | 125 | 239 | 1.29e-28 | 110 |
| MS.gene013578.t1 | AT1G74480 | 47.273 | 110 | 48 | 1 | 157 | 256 | 133 | 242 | 2.69e-27 | 107 |
| MS.gene013578.t1 | AT4G35590 | 32.593 | 135 | 71 | 2 | 143 | 257 | 169 | 303 | 3.30e-17 | 80.1 |
| MS.gene013578.t1 | AT4G35590 | 32.593 | 135 | 71 | 2 | 143 | 257 | 219 | 353 | 6.23e-17 | 79.7 |
| MS.gene013578.t1 | AT5G16100 | 45.205 | 73 | 40 | 0 | 147 | 219 | 342 | 414 | 7.74e-13 | 68.2 |
Find 48 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTAGCAGCCATTGTTAA+AGG | 0.208533 | 3.4:+83853428 | None:intergenic |
| TTGGAGCCTTGAGTGATTTC+AGG | 0.214370 | 3.4:+83854303 | None:intergenic |
| AATGTTGTCTTGCCTGAGTT+GGG | 0.325768 | 3.4:-83853680 | MS.gene013578:CDS |
| CAATGTTGTCTTGCCTGAGT+TGG | 0.335905 | 3.4:-83853681 | MS.gene013578:CDS |
| ATGATTTCTTTGAGTTTGAT+TGG | 0.342407 | 3.4:-83853832 | MS.gene013578:CDS |
| GAAGATGTTGGAGAAACTTC+CGG | 0.360968 | 3.4:-83852501 | MS.gene013578:CDS |
| GCCTTGAGTGATTTCAGGTT+GGG | 0.378542 | 3.4:+83854308 | None:intergenic |
| CAGCAATAGTCTCACCTTTG+TGG | 0.390633 | 3.4:+83853648 | None:intergenic |
| AAGATGTTGGAGAAACTTCC+GGG | 0.393818 | 3.4:-83852500 | MS.gene013578:CDS |
| TCATCATTCAAATCCATTCC+CGG | 0.427588 | 3.4:+83852482 | None:intergenic |
| TTGTGAAGAAAGAGAAGGAA+TGG | 0.429732 | 3.4:-83853577 | MS.gene013578:CDS |
| AGAATTGTCATTAGTTCCAT+TGG | 0.430301 | 3.4:-83853546 | MS.gene013578:CDS |
| CAGAAAACTGAGGAGCTTGA+TGG | 0.447810 | 3.4:-83853339 | MS.gene013578:CDS |
| GTACGAGTACTAGCATCATT+AGG | 0.450426 | 3.4:-83853502 | MS.gene013578:CDS |
| CTCGTACTGCTACTTGTACT+TGG | 0.454025 | 3.4:+83853518 | None:intergenic |
| GGTACTCATCGACAACCTTA+AGG | 0.457457 | 3.4:-83853318 | MS.gene013578:intron |
| GTTGGAGAAACTTCCGGGAA+TGG | 0.462988 | 3.4:-83852495 | MS.gene013578:CDS |
| CCTCAAAATTATTCTGATCA+AGG | 0.463476 | 3.4:+83853720 | None:intergenic |
| TGATTTCTTTGAGTTTGATT+GGG | 0.465378 | 3.4:-83853831 | MS.gene013578:CDS |
| TGTTGTGTAATGCAGGAAAA+GGG | 0.474901 | 3.4:-83852560 | MS.gene013578:intron |
| TGTGAAGAAAGAGAAGGAAT+GGG | 0.479018 | 3.4:-83853576 | MS.gene013578:CDS |
| AACTCAAAGAAATCATCAAA+TGG | 0.481692 | 3.4:+83853839 | None:intergenic |
| AAATCACTCAAGGCTCCAAC+TGG | 0.487286 | 3.4:-83854299 | MS.gene013578:CDS |
| ATGATGAAATCAAGAAGCTT+AGG | 0.499327 | 3.4:-83852466 | MS.gene013578:CDS |
| CTTGTACTTGGCAATGCCAA+TGG | 0.515278 | 3.4:+83853530 | None:intergenic |
| GCAGGAAAAGGGTTTGACTA+AGG | 0.516403 | 3.4:-83852549 | MS.gene013578:intron |
| GGAGAAGCAAAAGAAGATGT+TGG | 0.518512 | 3.4:-83852513 | MS.gene013578:CDS |
| GCTTCTGTGAAAACTGAAAG+TGG | 0.520217 | 3.4:-83853602 | MS.gene013578:CDS |
| GACTAAGGAAGTTGCCATGT+TGG | 0.527747 | 3.4:-83852534 | MS.gene013578:CDS |
| ATGTTGTCTTGCCTGAGTTG+GGG | 0.533975 | 3.4:-83853679 | MS.gene013578:CDS |
| AGCCTTGAGTGATTTCAGGT+TGG | 0.554392 | 3.4:+83854307 | None:intergenic |
| TCAAGAAGCTTAGGCAAGCA+TGG | 0.555849 | 3.4:-83852457 | MS.gene013578:CDS |
| TTGAACATTGTGATACCAGT+TGG | 0.557847 | 3.4:+83854284 | None:intergenic |
| TGGTTGTAATGCCCCAACTC+AGG | 0.557980 | 3.4:+83853668 | None:intergenic |
| AATTATTCTGATCAAGGTGT+GGG | 0.571228 | 3.4:+83853726 | None:intergenic |
| CTCAGGCAAGACAACATTGA+GGG | 0.577274 | 3.4:+83853685 | None:intergenic |
| GTACTAGCATCATTAGGAAG+AGG | 0.587268 | 3.4:-83853496 | MS.gene013578:CDS |
| TATTCTGATCAAGGTGTGGG+AGG | 0.607927 | 3.4:+83853729 | None:intergenic |
| ACCCAACCTGAAATCACTCA+AGG | 0.608828 | 3.4:-83854309 | MS.gene013578:CDS |
| AAATTATTCTGATCAAGGTG+TGG | 0.609905 | 3.4:+83853725 | None:intergenic |
| GCAGGGAGCTCAATATCACT+AGG | 0.629741 | 3.4:-83853370 | MS.gene013578:CDS |
| GCTGCTAAGAAAATGAATGT+TGG | 0.631864 | 3.4:-83853416 | MS.gene013578:CDS |
| TCAGGCAAGACAACATTGAG+GGG | 0.654617 | 3.4:+83853686 | None:intergenic |
| ACTATTGCTGATGCTGAGAG+TGG | 0.657284 | 3.4:-83853635 | MS.gene013578:CDS |
| ACTCAGGCAAGACAACATTG+AGG | 0.692460 | 3.4:+83853684 | None:intergenic |
| GGGAGCTCAATATCACTAGG+TGG | 0.701034 | 3.4:-83853367 | MS.gene013578:CDS |
| TTGGGGCATTACAACCACAA+AGG | 0.718163 | 3.4:-83853662 | MS.gene013578:CDS |
| GGTGGCCTCACAGAAAACTG+AGG | 0.738213 | 3.4:-83853349 | MS.gene013578:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAAACATTAAAAAA+GGG | + | chr3.4:83852828-83852847 | None:intergenic | 10.0% |
| !! | AGTAAAAAACATAAAAAAAT+TGG | + | chr3.4:83853784-83853803 | None:intergenic | 10.0% |
| !! | AAAACAAAACATTAAAAAAG+GGG | + | chr3.4:83852827-83852846 | None:intergenic | 15.0% |
| !! | AAAGAAAAAGAATATTCTTA+AGG | + | chr3.4:83853708-83853727 | None:intergenic | 15.0% |
| !! | ATTAGTTATTTATTGTCAAA+TGG | - | chr3.4:83854127-83854146 | MS.gene013578:intron | 15.0% |
| !! | GAAAAACAAAACATTAAAAA+AGG | + | chr3.4:83852829-83852848 | None:intergenic | 15.0% |
| !! | TCATGTAAAAATGATTACTT+TGG | + | chr3.4:83852941-83852960 | None:intergenic | 20.0% |
| !!! | TTTTAATGTTAACAGAATCA+TGG | - | chr3.4:83852860-83852879 | MS.gene013578:intron | 20.0% |
| ! | AAACCATTATTTACTCTGTT+TGG | - | chr3.4:83853489-83853508 | MS.gene013578:CDS | 25.0% |
| ! | AACAAAGATATGATAGGTTA+AGG | + | chr3.4:83852587-83852606 | None:intergenic | 25.0% |
| ! | AACATTAAAAAAGGGGAAAA+CGG | + | chr3.4:83852820-83852839 | None:intergenic | 25.0% |
| ! | AACTCAAAGAAATCATCAAA+TGG | + | chr3.4:83852894-83852913 | None:intergenic | 25.0% |
| ! | AATCCAAACAGAGTAAATAA+TGG | + | chr3.4:83853495-83853514 | None:intergenic | 25.0% |
| ! | ACAACATAGAATATACCTTA+AGG | + | chr3.4:83853430-83853449 | None:intergenic | 25.0% |
| ! | ACACATCTTATATTCTCTTT+AGG | - | chr3.4:83853807-83853826 | MS.gene013578:CDS | 25.0% |
| ! | CAAGAACATAGAAAAAAAGA+AGG | + | chr3.4:83852614-83852633 | None:intergenic | 25.0% |
| ! | GGAAAAAACAAAGATATGAT+AGG | + | chr3.4:83852593-83852612 | None:intergenic | 25.0% |
| ! | TAAAGAGAATATAAGATGTG+TGG | + | chr3.4:83853808-83853827 | None:intergenic | 25.0% |
| ! | TATGTTTCAATTATCATTCC+CGG | + | chr3.4:83853565-83853584 | None:intergenic | 25.0% |
| ! | TTTCATGTACTTGAAAATGT+GGG | + | chr3.4:83853472-83853491 | None:intergenic | 25.0% |
| !! | ATGATTTCTTTGAGTTTGAT+TGG | - | chr3.4:83852898-83852917 | MS.gene013578:intron | 25.0% |
| !! | TGATTTCTTTGAGTTTGATT+GGG | - | chr3.4:83852899-83852918 | MS.gene013578:intron | 25.0% |
| !! | TTTTGATGTTCCTTTAACAA+TGG | - | chr3.4:83853292-83853311 | MS.gene013578:intron | 25.0% |
| !!! | TCTTTTTTTCTATGTTCTTG+TGG | - | chr3.4:83852614-83852633 | MS.gene013578:intron | 25.0% |
| AAATTATTCTGATCAAGGTG+TGG | + | chr3.4:83853008-83853027 | None:intergenic | 30.0% | |
| AATTATTCTGATCAAGGTGT+GGG | + | chr3.4:83853007-83853026 | None:intergenic | 30.0% | |
| AGAATTGTCATTAGTTCCAT+TGG | - | chr3.4:83853184-83853203 | MS.gene013578:intron | 30.0% | |
| ATGATGAAATCAAGAAGCTT+AGG | - | chr3.4:83854264-83854283 | MS.gene013578:CDS | 30.0% | |
| CATTTCAAATACATCTACGA+TGG | - | chr3.4:83853832-83853851 | MS.gene013578:CDS | 30.0% | |
| CCTCAAAATTATTCTGATCA+AGG | + | chr3.4:83853013-83853032 | None:intergenic | 30.0% | |
| GAATGAAAAACAGAAAAGGA+AGG | + | chr3.4:83852548-83852567 | None:intergenic | 30.0% | |
| GTTTCATGTACTTGAAAATG+TGG | + | chr3.4:83853473-83853492 | None:intergenic | 30.0% | |
| TATAATGATGTGTTGAAGTG+TGG | - | chr3.4:83852734-83852753 | MS.gene013578:intron | 30.0% | |
| TGTGGAATGAAAAACAGAAA+AGG | + | chr3.4:83852552-83852571 | None:intergenic | 30.0% | |
| TTAGTTTCTTCGATAGTAGA+TGG | - | chr3.4:83853926-83853945 | MS.gene013578:intron | 30.0% | |
| TTCATGTACTTGAAAATGTG+GGG | + | chr3.4:83853471-83853490 | None:intergenic | 30.0% | |
| ! | CCTTGATCAGAATAATTTTG+AGG | - | chr3.4:83853010-83853029 | MS.gene013578:intron | 30.0% |
| ! | TGTACCTTAGACTAAGTTTT+TGG | - | chr3.4:83853528-83853547 | MS.gene013578:CDS | 30.0% |
| ! | TTAAGGTACTCTACATATTG+TGG | + | chr3.4:83852570-83852589 | None:intergenic | 30.0% |
| !! | ATTGTTTTGTTGTGTAATGC+AGG | - | chr3.4:83854163-83854182 | MS.gene013578:intron | 30.0% |
| !! | CCTTTTGAAAAAAAGATGCA+GGG | - | chr3.4:83853343-83853362 | MS.gene013578:CDS | 30.0% |
| !! | GGAACATTGAAAGTATCATA+TGG | + | chr3.4:83852527-83852546 | None:intergenic | 30.0% |
| !! | TAAGAGTATCATACAAGTGT+AGG | + | chr3.4:83853659-83853678 | None:intergenic | 30.0% |
| !!! | CCTGCATCTTTTTTTCAAAA+GGG | + | chr3.4:83853345-83853364 | None:intergenic | 30.0% |
| CTATGAAACATGACAACTCT+AGG | - | chr3.4:83853614-83853633 | MS.gene013578:CDS | 35.0% | |
| GCTGCTAAGAAAATGAATGT+TGG | - | chr3.4:83853314-83853333 | MS.gene013578:intron | 35.0% | |
| TCATCATTCAAATCCATTCC+CGG | + | chr3.4:83854251-83854270 | None:intergenic | 35.0% | |
| TGGACCAAAAACTTAGTCTA+AGG | + | chr3.4:83853535-83853554 | None:intergenic | 35.0% | |
| TGTGAAGAAAGAGAAGGAAT+GGG | - | chr3.4:83853154-83853173 | MS.gene013578:intron | 35.0% | |
| TGTTGTGTAATGCAGGAAAA+GGG | - | chr3.4:83854170-83854189 | MS.gene013578:intron | 35.0% | |
| TTCTTAGCAGCCATTGTTAA+AGG | + | chr3.4:83853305-83853324 | None:intergenic | 35.0% | |
| TTGAACATTGTGATACCAGT+TGG | + | chr3.4:83852449-83852468 | None:intergenic | 35.0% | |
| TTGTGAAGAAAGAGAAGGAA+TGG | - | chr3.4:83853153-83853172 | MS.gene013578:intron | 35.0% | |
| TTGTTGTGTAATGCAGGAAA+AGG | - | chr3.4:83854169-83854188 | MS.gene013578:intron | 35.0% | |
| ! | AAAATGTATCGACGCAACAA+TGG | - | chr3.4:83853867-83853886 | MS.gene013578:intron | 35.0% |
| ! | CTTTGTTTCGACACTTAGAT+CGG | - | chr3.4:83853724-83853743 | MS.gene013578:CDS | 35.0% |
| !! | CCCTTTTGAAAAAAAGATGC+AGG | - | chr3.4:83853342-83853361 | MS.gene013578:CDS | 35.0% |
| !!! | CCCTGCATCTTTTTTTCAAA+AGG | + | chr3.4:83853346-83853365 | None:intergenic | 35.0% |
| !!! | TGGTTTTGTGAAGAAAGAGA+AGG | - | chr3.4:83853148-83853167 | MS.gene013578:intron | 35.0% |
| AAGATGTTGGAGAAACTTCC+GGG | - | chr3.4:83854230-83854249 | MS.gene013578:intron | 40.0% | |
| AATGTTGTCTTGCCTGAGTT+GGG | - | chr3.4:83853050-83853069 | MS.gene013578:intron | 40.0% | |
| ACGACACAGACAAGTAAGTA+TGG | - | chr3.4:83852479-83852498 | MS.gene013578:CDS | 40.0% | |
| CACAGACAAGTAAGTATGGT+CGG | - | chr3.4:83852483-83852502 | MS.gene013578:CDS | 40.0% | |
| CATTCTCTTTGTGACTTTCG+AGG | - | chr3.4:83852759-83852778 | MS.gene013578:intron | 40.0% | |
| GAAGATGTTGGAGAAACTTC+CGG | - | chr3.4:83854229-83854248 | MS.gene013578:intron | 40.0% | |
| GCTTCTGTGAAAACTGAAAG+TGG | - | chr3.4:83853128-83853147 | MS.gene013578:intron | 40.0% | |
| GGAGAAGCAAAAGAAGATGT+TGG | - | chr3.4:83854217-83854236 | MS.gene013578:intron | 40.0% | |
| GTACGAGTACTAGCATCATT+AGG | - | chr3.4:83853228-83853247 | MS.gene013578:intron | 40.0% | |
| GTACTAGCATCATTAGGAAG+AGG | - | chr3.4:83853234-83853253 | MS.gene013578:intron | 40.0% | |
| GTTTCAATTATCATTCCCGG+CGG | + | chr3.4:83853562-83853581 | None:intergenic | 40.0% | |
| TTCGAGGTCGATATGGAATT+TGG | - | chr3.4:83852775-83852794 | MS.gene013578:intron | 40.0% | |
| TTTCAATTATCATTCCCGGC+GGG | + | chr3.4:83853561-83853580 | None:intergenic | 40.0% | |
| ! | CTTCTTTTGCTTCTCCAACA+TGG | + | chr3.4:83854213-83854232 | None:intergenic | 40.0% |
| !!! | TTGTCTGTGTCGTTTTGTTG+AGG | + | chr3.4:83852472-83852491 | None:intergenic | 40.0% |
| AAATCACTCAAGGCTCCAAC+TGG | - | chr3.4:83852431-83852450 | MS.gene013578:CDS | 45.0% | |
| ACCCAACCTGAAATCACTCA+AGG | - | chr3.4:83852421-83852440 | MS.gene013578:CDS | 45.0% | |
| ACTATTGCTGATGCTGAGAG+TGG | - | chr3.4:83853095-83853114 | MS.gene013578:intron | 45.0% | |
| ACTCAGGCAAGACAACATTG+AGG | + | chr3.4:83853049-83853068 | None:intergenic | 45.0% | |
| ATGTTGTCTTGCCTGAGTTG+GGG | - | chr3.4:83853051-83853070 | MS.gene013578:intron | 45.0% | |
| CAATGTTGTCTTGCCTGAGT+TGG | - | chr3.4:83853049-83853068 | MS.gene013578:intron | 45.0% | |
| CAGAAAACTGAGGAGCTTGA+TGG | - | chr3.4:83853391-83853410 | MS.gene013578:CDS | 45.0% | |
| CAGCAATAGTCTCACCTTTG+TGG | + | chr3.4:83853085-83853104 | None:intergenic | 45.0% | |
| CTCAGGCAAGACAACATTGA+GGG | + | chr3.4:83853048-83853067 | None:intergenic | 45.0% | |
| CTTGTACTTGGCAATGCCAA+TGG | + | chr3.4:83853203-83853222 | None:intergenic | 45.0% | |
| GACTAAGGAAGTTGCCATGT+TGG | - | chr3.4:83854196-83854215 | MS.gene013578:intron | 45.0% | |
| GCAGGAAAAGGGTTTGACTA+AGG | - | chr3.4:83854181-83854200 | MS.gene013578:intron | 45.0% | |
| GGTACTCATCGACAACCTTA+AGG | - | chr3.4:83853412-83853431 | MS.gene013578:CDS | 45.0% | |
| TATTCTGATCAAGGTGTGGG+AGG | + | chr3.4:83853004-83853023 | None:intergenic | 45.0% | |
| TCAAGAAGCTTAGGCAAGCA+TGG | - | chr3.4:83854273-83854292 | MS.gene013578:CDS | 45.0% | |
| TCAGGCAAGACAACATTGAG+GGG | + | chr3.4:83853047-83853066 | None:intergenic | 45.0% | |
| TGTGACTTTCGAGGTCGATA+TGG | - | chr3.4:83852768-83852787 | MS.gene013578:intron | 45.0% | |
| TTGGAGCCTTGAGTGATTTC+AGG | + | chr3.4:83852430-83852449 | None:intergenic | 45.0% | |
| ! | AAGCTCCTCAGTTTTCTGTG+AGG | + | chr3.4:83853389-83853408 | None:intergenic | 45.0% |
| ! | AGCCTTGAGTGATTTCAGGT+TGG | + | chr3.4:83852426-83852445 | None:intergenic | 45.0% |
| ! | CTCGTACTGCTACTTGTACT+TGG | + | chr3.4:83853215-83853234 | None:intergenic | 45.0% |
| ! | TTGGGGCATTACAACCACAA+AGG | - | chr3.4:83853068-83853087 | MS.gene013578:intron | 45.0% |
| !! | GCCTTGAGTGATTTCAGGTT+GGG | + | chr3.4:83852425-83852444 | None:intergenic | 45.0% |
| CTTGAAAATGTGGGGCAGAG+TGG | + | chr3.4:83853463-83853482 | None:intergenic | 50.0% | |
| GCAGGGAGCTCAATATCACT+AGG | - | chr3.4:83853360-83853379 | MS.gene013578:CDS | 50.0% | |
| GGGAGCTCAATATCACTAGG+TGG | - | chr3.4:83853363-83853382 | MS.gene013578:CDS | 50.0% | |
| GTTGGAGAAACTTCCGGGAA+TGG | - | chr3.4:83854235-83854254 | MS.gene013578:intron | 50.0% | |
| TGGTTGTAATGCCCCAACTC+AGG | + | chr3.4:83853065-83853084 | None:intergenic | 50.0% | |
| GGTGGCCTCACAGAAAACTG+AGG | - | chr3.4:83853381-83853400 | MS.gene013578:CDS | 55.0% | |
| TTATCATTCCCGGCGGGTCA+TGG | + | chr3.4:83853555-83853574 | None:intergenic | 55.0% | |
| !! | TTTTTGGTCCATGACCCGCC+GGG | - | chr3.4:83853544-83853563 | MS.gene013578:CDS | 55.0% |
| !!! | GTTTTTGGTCCATGACCCGC+CGG | - | chr3.4:83853543-83853562 | MS.gene013578:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 83852409 | 83854343 | 83852409 | ID=MS.gene013578 |
| chr3.4 | mRNA | 83852409 | 83854343 | 83852409 | ID=MS.gene013578.t1;Parent=MS.gene013578 |
| chr3.4 | exon | 83854261 | 83854343 | 83854261 | ID=MS.gene013578.t1.exon1;Parent=MS.gene013578.t1 |
| chr3.4 | CDS | 83854261 | 83854343 | 83854261 | ID=cds.MS.gene013578.t1;Parent=MS.gene013578.t1 |
| chr3.4 | exon | 83853319 | 83853877 | 83853319 | ID=MS.gene013578.t1.exon2;Parent=MS.gene013578.t1 |
| chr3.4 | CDS | 83853319 | 83853877 | 83853319 | ID=cds.MS.gene013578.t1;Parent=MS.gene013578.t1 |
| chr3.4 | exon | 83852409 | 83852567 | 83852409 | ID=MS.gene013578.t1.exon3;Parent=MS.gene013578.t1 |
| chr3.4 | CDS | 83852409 | 83852567 | 83852409 | ID=cds.MS.gene013578.t1;Parent=MS.gene013578.t1 |
| Gene Sequence |
| Protein sequence |
