Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013632.t1 | XP_003602194.1 | 98.2 | 329 | 6 | 0 | 1 | 329 | 1 | 329 | 5.70E-150 | 540.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013632.t1 | Q700C7 | 54.3 | 370 | 122 | 9 | 1 | 329 | 1 | 364 | 3.7e-65 | 250.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013632.t1 | G7J6A1 | 98.2 | 329 | 6 | 0 | 1 | 329 | 1 | 329 | 4.1e-150 | 540.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013632.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013632.t1 | MTR_3g090850 | 98.176 | 329 | 6 | 0 | 1 | 329 | 1 | 329 | 0.0 | 652 |
| MS.gene013632.t1 | MTR_1g028470 | 61.468 | 327 | 74 | 13 | 5 | 328 | 15 | 292 | 3.11e-108 | 317 |
| MS.gene013632.t1 | MTR_2g022280 | 49.123 | 228 | 73 | 4 | 101 | 328 | 1 | 185 | 1.20e-62 | 197 |
| MS.gene013632.t1 | MTR_0194s0050 | 38.790 | 281 | 127 | 7 | 46 | 326 | 141 | 376 | 3.57e-50 | 171 |
| MS.gene013632.t1 | MTR_3g099620 | 35.341 | 249 | 121 | 7 | 77 | 324 | 96 | 305 | 2.61e-37 | 136 |
| MS.gene013632.t1 | MTR_1g082480 | 36.441 | 236 | 100 | 5 | 99 | 327 | 134 | 326 | 3.58e-36 | 133 |
| MS.gene013632.t1 | MTR_8g066770 | 37.563 | 197 | 82 | 3 | 99 | 295 | 112 | 267 | 7.60e-36 | 132 |
| MS.gene013632.t1 | MTR_7g113830 | 31.208 | 298 | 159 | 7 | 30 | 326 | 49 | 301 | 1.74e-35 | 131 |
| MS.gene013632.t1 | MTR_1g082480 | 36.530 | 219 | 90 | 4 | 99 | 311 | 134 | 309 | 2.72e-33 | 125 |
| MS.gene013632.t1 | MTR_5g064950 | 30.375 | 293 | 156 | 8 | 19 | 309 | 23 | 269 | 1.70e-31 | 120 |
| MS.gene013632.t1 | MTR_5g064950 | 30.375 | 293 | 156 | 8 | 19 | 309 | 23 | 269 | 3.85e-31 | 119 |
| MS.gene013632.t1 | MTR_8g024210 | 75.000 | 48 | 12 | 0 | 99 | 146 | 179 | 226 | 2.29e-19 | 88.2 |
| MS.gene013632.t1 | MTR_8g024210 | 41.758 | 91 | 51 | 2 | 239 | 328 | 269 | 358 | 3.10e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013632.t1 | AT5G53210 | 57.068 | 382 | 93 | 13 | 1 | 329 | 1 | 364 | 1.45e-112 | 331 |
| MS.gene013632.t1 | AT5G53210 | 54.420 | 362 | 94 | 13 | 1 | 309 | 1 | 344 | 3.90e-95 | 286 |
| MS.gene013632.t1 | AT3G06120 | 44.737 | 228 | 90 | 3 | 101 | 328 | 1 | 192 | 6.48e-58 | 186 |
| MS.gene013632.t1 | AT3G24140 | 40.541 | 259 | 117 | 6 | 70 | 328 | 172 | 393 | 2.46e-45 | 159 |
| MS.gene013632.t1 | AT3G24140 | 40.541 | 259 | 117 | 6 | 70 | 328 | 172 | 393 | 2.47e-45 | 159 |
| MS.gene013632.t1 | AT4G01460 | 67.188 | 64 | 21 | 0 | 99 | 162 | 113 | 176 | 5.37e-24 | 100 |
| MS.gene013632.t1 | AT4G01460 | 67.188 | 64 | 21 | 0 | 99 | 162 | 113 | 176 | 5.37e-24 | 100 |
| MS.gene013632.t1 | AT1G22490 | 64.062 | 64 | 23 | 0 | 99 | 162 | 113 | 176 | 3.02e-23 | 98.2 |
| MS.gene013632.t1 | AT5G46690 | 33.051 | 236 | 104 | 6 | 99 | 317 | 86 | 284 | 3.08e-23 | 98.6 |
| MS.gene013632.t1 | AT1G72210 | 31.304 | 230 | 112 | 6 | 99 | 326 | 123 | 308 | 4.28e-23 | 97.8 |
| MS.gene013632.t1 | AT5G46690 | 34.463 | 177 | 74 | 4 | 99 | 269 | 86 | 226 | 5.66e-23 | 97.1 |
| MS.gene013632.t1 | AT1G22490 | 64.062 | 64 | 23 | 0 | 99 | 162 | 113 | 176 | 6.55e-23 | 97.4 |
| MS.gene013632.t1 | AT1G72210 | 66.102 | 59 | 20 | 0 | 99 | 157 | 123 | 181 | 2.80e-22 | 95.5 |
| MS.gene013632.t1 | AT3G61950 | 53.247 | 77 | 34 | 1 | 99 | 173 | 125 | 201 | 1.37e-21 | 93.2 |
| MS.gene013632.t1 | AT3G61950 | 53.247 | 77 | 34 | 1 | 99 | 173 | 125 | 201 | 1.74e-21 | 93.2 |
| MS.gene013632.t1 | AT3G61950 | 53.247 | 77 | 34 | 1 | 99 | 173 | 176 | 252 | 3.91e-21 | 92.8 |
| MS.gene013632.t1 | AT3G61950 | 53.247 | 77 | 34 | 1 | 99 | 173 | 176 | 252 | 4.12e-21 | 92.8 |
| MS.gene013632.t1 | AT2G46810 | 60.317 | 63 | 25 | 0 | 99 | 161 | 119 | 181 | 6.81e-21 | 91.7 |
| MS.gene013632.t1 | AT2G46810 | 60.317 | 63 | 25 | 0 | 99 | 161 | 119 | 181 | 1.16e-20 | 91.3 |
| MS.gene013632.t1 | AT2G46810 | 60.317 | 63 | 25 | 0 | 99 | 161 | 179 | 241 | 1.95e-20 | 91.3 |
| MS.gene013632.t1 | AT2G46810 | 60.317 | 63 | 25 | 0 | 99 | 161 | 191 | 253 | 2.40e-20 | 90.9 |
| MS.gene013632.t1 | AT5G65320 | 59.016 | 61 | 25 | 0 | 99 | 159 | 100 | 160 | 1.64e-16 | 79.0 |
| MS.gene013632.t1 | AT5G65320 | 59.016 | 61 | 25 | 0 | 99 | 159 | 100 | 160 | 2.52e-16 | 78.6 |
Find 49 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAGACAGAACAGAATT+TGG | 0.163384 | 3.4:+83176287 | MS.gene013632:CDS |
| ATGTAGCTTTGTTGCATTCT+TGG | 0.204975 | 3.4:-83177708 | None:intergenic |
| CTAGTTGGTTGTGGAGTTCT+TGG | 0.246531 | 3.4:-83177675 | None:intergenic |
| TGTGGAGTTCTTGGACTAAT+TGG | 0.288248 | 3.4:-83177666 | None:intergenic |
| GAAGTGACCTCATTCTCTTT+TGG | 0.294735 | 3.4:-83176395 | None:intergenic |
| CTTGGACTTGGAATTAATCT+TGG | 0.298037 | 3.4:-83177591 | None:intergenic |
| ATCTTCTAGACTCTCTAAAA+TGG | 0.303766 | 3.4:-83176330 | None:intergenic |
| TTCTTTGTTTCTTAGCTTCA+AGG | 0.307021 | 3.4:-83177545 | None:intergenic |
| GGAGATCAAGCATCAATAAT+TGG | 0.321601 | 3.4:+83177477 | MS.gene013632:CDS |
| GTTTCTTAGCTTCAAGGGCT+TGG | 0.330395 | 3.4:-83177539 | None:intergenic |
| TGTTGCATTCTTGGCTTGTA+AGG | 0.333897 | 3.4:-83177699 | None:intergenic |
| AACTTGAAACTGAACCTAAA+AGG | 0.343348 | 3.4:+83176474 | MS.gene013632:CDS |
| AAGTTTAGTCTTGGACTTAG+AGG | 0.354427 | 3.4:-83177642 | None:intergenic |
| GGACTTAGTGGTGAAGGTCT+TGG | 0.391894 | 3.4:-83177609 | None:intergenic |
| ACTGTTTCTCAACGAATTCC+AGG | 0.392508 | 3.4:+83177873 | MS.gene013632:CDS |
| CTTGGCTTGTAAGGACTAGT+TGG | 0.398269 | 3.4:-83177690 | None:intergenic |
| CTAATTGGCAAGTTTAGTCT+TGG | 0.398977 | 3.4:-83177651 | None:intergenic |
| TCATATAAGCTTTCTTCCAT+TGG | 0.406925 | 3.4:-83176260 | None:intergenic |
| TTGACCTCCACGTCAGCAAT+AGG | 0.436432 | 3.4:-83177822 | None:intergenic |
| ATCTGTTCCTCAAGCAAAGT+TGG | 0.461398 | 3.4:-83176515 | None:intergenic |
| TCTTTGTTTCTTAGCTTCAA+GGG | 0.473972 | 3.4:-83177544 | None:intergenic |
| TTTCTTGGACTTAGTGGTGA+AGG | 0.477916 | 3.4:-83177615 | None:intergenic |
| GAGGAAGTAGAGGAACTAGT+AGG | 0.492572 | 3.4:-83177756 | None:intergenic |
| AGTGGTGAAGGTCTTGGACT+TGG | 0.493653 | 3.4:-83177603 | None:intergenic |
| CAGTGCTGATGGACAACAAA+GGG | 0.493882 | 3.4:+83176541 | MS.gene013632:CDS |
| GTAGAGGAACTAGTAGGAGA+TGG | 0.502378 | 3.4:-83177750 | None:intergenic |
| GGTCACTTCAACATCGAGAT+TGG | 0.508918 | 3.4:+83176409 | MS.gene013632:CDS |
| ATAATCTTCAAAGCTTGTCC+TGG | 0.509002 | 3.4:-83177891 | None:intergenic |
| CAAGTTCTTCAGCACTCAGT+TGG | 0.524170 | 3.4:-83178772 | None:intergenic |
| TTGTAAGGACTAGTTGGTTG+TGG | 0.524571 | 3.4:-83177684 | None:intergenic |
| TACTACTCCAAAAGAGAATG+AGG | 0.530957 | 3.4:+83176388 | MS.gene013632:CDS |
| GTTGAACTCCTTCACTATCA+AGG | 0.535634 | 3.4:+83177983 | MS.gene013632:CDS |
| CTAGTAGGAGATGGATCAAG+AGG | 0.552519 | 3.4:-83177741 | None:intergenic |
| GAACAGATTAACAGTGCTGA+TGG | 0.553866 | 3.4:+83176530 | MS.gene013632:CDS |
| TTCAGAATCTTGCAGCGAAG+AGG | 0.569856 | 3.4:-83176447 | None:intergenic |
| GCTTACACCAACTTTGCTTG+AGG | 0.578198 | 3.4:+83176508 | MS.gene013632:CDS |
| TTTAGTCTTGGACTTAGAGG+TGG | 0.583231 | 3.4:-83177639 | None:intergenic |
| ATCATTGACTGAGGAAGTAG+AGG | 0.588412 | 3.4:-83177766 | None:intergenic |
| GTCTCCTATTGCTGACGTGG+AGG | 0.609724 | 3.4:+83177818 | MS.gene013632:CDS |
| TTACTGTGGAGCGCAACAGA+AGG | 0.616988 | 3.4:+83176573 | MS.gene013632:CDS |
| GCTTCAACTTGATTGATGAG+AGG | 0.624063 | 3.4:-83176365 | None:intergenic |
| AAAGTCTCCTATTGCTGACG+TGG | 0.628049 | 3.4:+83177815 | MS.gene013632:CDS |
| AAGTACTATTAATGTTAACA+TGG | 0.635453 | 3.4:-83177947 | None:intergenic |
| TAAACGTACCTTGATAGTGA+AGG | 0.635932 | 3.4:-83177991 | None:intergenic |
| ATTGATGTTATCATTGACTG+AGG | 0.636012 | 3.4:-83177775 | None:intergenic |
| GATCAAGCATCAATAATTGG+AGG | 0.643294 | 3.4:+83177480 | MS.gene013632:CDS |
| GATAGTGAAGGAGTTCAACA+TGG | 0.664739 | 3.4:-83177979 | None:intergenic |
| AAGGGTTTCTCATATTACTG+TGG | 0.670712 | 3.4:+83176559 | MS.gene013632:CDS |
| ACAGTGCTGATGGACAACAA+AGG | 0.726440 | 3.4:+83176540 | MS.gene013632:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAATAAAATAGCATT+TGG | + | chr3.4:83176801-83176820 | MS.gene013632:intron | 10.0% |
| !! | TACTGTGATTAATTATATAT+AGG | + | chr3.4:83178154-83178173 | MS.gene013632:intron | 15.0% |
| !! | TATATATGTCAAAAAGTAAA+TGG | + | chr3.4:83178504-83178523 | MS.gene013632:intron | 15.0% |
| !!! | TACTTTTTGACATATATATA+AGG | - | chr3.4:83178502-83178521 | None:intergenic | 15.0% |
| !! | AAGTACTATTAATGTTAACA+TGG | - | chr3.4:83177950-83177969 | None:intergenic | 20.0% |
| !!! | AAATTGTAGTTTTCAAAGTT+AGG | + | chr3.4:83178425-83178444 | MS.gene013632:intron | 20.0% |
| !!! | AAATTGTAGTTTTCAAAGTT+AGG | - | chr3.4:83178444-83178425 | None:intergenic | 20.0% |
| !!! | AACTTTGAAAACTACAATTT+TGG | + | chr3.4:83178231-83178250 | MS.gene013632:intron | 20.0% |
| !!! | AACTTTGAAAACTACAATTT+TGG | - | chr3.4:83178250-83178231 | None:intergenic | 20.0% |
| !!! | AATTGTAGTTTTCAAAGTTA+GGG | + | chr3.4:83178426-83178445 | MS.gene013632:intron | 20.0% |
| !!! | AATTGTAGTTTTCAAAGTTA+GGG | - | chr3.4:83178445-83178426 | None:intergenic | 20.0% |
| !!! | ATGGTTTGTAATTAATACTA+TGG | + | chr3.4:83178714-83178733 | MS.gene013632:intron | 20.0% |
| !!! | TAAGTGTATATTTGTTTCTA+TGG | + | chr3.4:83176660-83176679 | MS.gene013632:intron | 20.0% |
| !!! | TATACTTGATTTTATTGTGA+TGG | - | chr3.4:83178087-83178106 | None:intergenic | 20.0% |
| !!! | TTTAAGGTATATCAAAGATA+TGG | + | chr3.4:83177020-83177039 | MS.gene013632:intron | 20.0% |
| ! | ATTAAATTAGTCGCATTAGA+TGG | - | chr3.4:83177454-83177473 | None:intergenic | 25.0% |
| ! | ATTACAAACCATTCTTATAC+TGG | - | chr3.4:83178706-83178725 | None:intergenic | 25.0% |
| ! | ATTTAAGCACAATGAAAACA+TGG | - | chr3.4:83176911-83176930 | None:intergenic | 25.0% |
| ! | ATTTGATTACTATTTGTGCA+CGG | + | chr3.4:83177240-83177259 | MS.gene013632:intron | 25.0% |
| ! | CTATTGAAGAGTAAAAAGAA+AGG | - | chr3.4:83178051-83178070 | None:intergenic | 25.0% |
| ! | TAACAAGTCAATTACTTACT+GGG | + | chr3.4:83176931-83176950 | MS.gene013632:intron | 25.0% |
| ! | TAATGCGACTAATTTAATCA+GGG | + | chr3.4:83177456-83177475 | MS.gene013632:intron | 25.0% |
| ! | TTAAATTAGTCGCATTAGAT+GGG | - | chr3.4:83177453-83177472 | None:intergenic | 25.0% |
| ! | TTAACAAGTCAATTACTTAC+TGG | + | chr3.4:83176930-83176949 | MS.gene013632:intron | 25.0% |
| !! | ATTGTAGTTTTCAAAGTTAG+GGG | + | chr3.4:83178427-83178446 | MS.gene013632:intron | 25.0% |
| !! | ATTGTAGTTTTCAAAGTTAG+GGG | - | chr3.4:83178446-83178427 | None:intergenic | 25.0% |
| !! | CTTTCTTTTTACTCTTCAAT+AGG | + | chr3.4:83178049-83178068 | MS.gene013632:intron | 25.0% |
| !! | TTGATGTACTTTAAAAGTAG+TGG | + | chr3.4:83178528-83178547 | MS.gene013632:intron | 25.0% |
| !!! | CAACATTTTGAAAAGATAAG+GGG | + | chr3.4:83178336-83178355 | MS.gene013632:intron | 25.0% |
| !!! | GCAACATTTTGAAAAGATAA+GGG | + | chr3.4:83178335-83178354 | MS.gene013632:intron | 25.0% |
| AACAAGTCAATTACTTACTG+GGG | + | chr3.4:83176932-83176951 | MS.gene013632:intron | 30.0% | |
| AACTTGAAACTGAACCTAAA+AGG | + | chr3.4:83176474-83176493 | MS.gene013632:CDS | 30.0% | |
| ACAGCAACAAATTATAATGG+AGG | - | chr3.4:83177048-83177067 | None:intergenic | 30.0% | |
| ACATATTTCCCTTATGTTAG+GGG | + | chr3.4:83178366-83178385 | MS.gene013632:intron | 30.0% | |
| AGACATATTTCCCTTATGTT+AGG | + | chr3.4:83178364-83178383 | MS.gene013632:intron | 30.0% | |
| ATTTAGGTCCAGTATAAGAA+TGG | + | chr3.4:83178695-83178714 | MS.gene013632:intron | 30.0% | |
| CTAATGCGACTAATTTAATC+AGG | + | chr3.4:83177455-83177474 | MS.gene013632:intron | 30.0% | |
| GACATATTTCCCTTATGTTA+GGG | + | chr3.4:83178365-83178384 | MS.gene013632:intron | 30.0% | |
| GCTACTTATGTGTTCAATTT+AGG | + | chr3.4:83178679-83178698 | MS.gene013632:intron | 30.0% | |
| TAAACTTGCACATCTAAGTA+TGG | - | chr3.4:83177004-83177023 | None:intergenic | 30.0% | |
| TAAATTAGTCGCATTAGATG+GGG | - | chr3.4:83177452-83177471 | None:intergenic | 30.0% | |
| TACTTAGATGTGCAAGTTTA+AGG | + | chr3.4:83177004-83177023 | MS.gene013632:intron | 30.0% | |
| TATCAAGGTACGTTTATTCT+TGG | + | chr3.4:83177998-83178017 | MS.gene013632:intron | 30.0% | |
| TGAGTGATTATGAAGGTTTA+TGG | + | chr3.4:83176959-83176978 | MS.gene013632:intron | 30.0% | |
| TTTGAAGACAGAACAGAATT+TGG | + | chr3.4:83176287-83176306 | MS.gene013632:CDS | 30.0% | |
| ! | ACAGTTTTCAAAAGAACATG+AGG | - | chr3.4:83177858-83177877 | None:intergenic | 30.0% |
| ! | ATACGTCTTTTCAACAAATG+AGG | - | chr3.4:83178628-83178647 | None:intergenic | 30.0% |
| ! | ATCTTCTAGACTCTCTAAAA+TGG | - | chr3.4:83176333-83176352 | None:intergenic | 30.0% |
| ! | ATGTTAAAGATCACGTTTTG+AGG | + | chr3.4:83176746-83176765 | MS.gene013632:intron | 30.0% |
| ! | ATTGATGTTATCATTGACTG+AGG | - | chr3.4:83177778-83177797 | None:intergenic | 30.0% |
| ! | CTTTCAAAAAGTTGCGATTT+TGG | - | chr3.4:83178221-83178202 | None:intergenic | 30.0% |
| ! | TCTTTGTTTCTTAGCTTCAA+GGG | - | chr3.4:83177547-83177566 | None:intergenic | 30.0% |
| ! | TTCTTTGTTTCTTAGCTTCA+AGG | - | chr3.4:83177548-83177567 | None:intergenic | 30.0% |
| ! | TTGTAGTTTTCAAAGTTAGG+GGG | + | chr3.4:83178428-83178447 | MS.gene013632:intron | 30.0% |
| ! | TTGTAGTTTTCAAAGTTAGG+GGG | - | chr3.4:83178447-83178428 | None:intergenic | 30.0% |
| !! | ATCGCAACTTTTTGAAAGAT+AGG | + | chr3.4:83178456-83178475 | MS.gene013632:intron | 30.0% |
| !! | CATTATAATTTGTTGCTGTG+GGG | + | chr3.4:83177049-83177068 | MS.gene013632:intron | 30.0% |
| !! | CCATTATAATTTGTTGCTGT+GGG | + | chr3.4:83177048-83177067 | MS.gene013632:intron | 30.0% |
| !! | CGCAACATTTTGAAAAGATA+AGG | + | chr3.4:83178334-83178353 | MS.gene013632:intron | 30.0% |
| !! | CGCAACTTTTTGAAAGATAA+GGG | - | chr3.4:83178198-83178217 | None:intergenic | 30.0% |
| !! | GCAACTTTTTGAAAGATAAG+GGG | - | chr3.4:83178197-83178216 | None:intergenic | 30.0% |
| !! | TCCATTATAATTTGTTGCTG+TGG | + | chr3.4:83177047-83177066 | MS.gene013632:intron | 30.0% |
| !! | TCGCAACTTTTTGAAAGATA+AGG | - | chr3.4:83178476-83178457 | None:intergenic | 30.0% |
| !! | TCGCAACTTTTTGAAAGATA+GGG | + | chr3.4:83178457-83178476 | MS.gene013632:intron | 30.0% |
| AAGGGTTTCTCATATTACTG+TGG | + | chr3.4:83176559-83176578 | MS.gene013632:CDS | 35.0% | |
| AGAGCATATTTCCCTAAACA+TGG | + | chr3.4:83178395-83178414 | MS.gene013632:intron | 35.0% | |
| AGCATATTTCCCTAAACATG+GGG | + | chr3.4:83178397-83178416 | MS.gene013632:intron | 35.0% | |
| ATAAGGCTAAAGTGCAACTT+TGG | - | chr3.4:83178485-83178504 | None:intergenic | 35.0% | |
| ATAATCTTCAAAGCTTGTCC+TGG | - | chr3.4:83177894-83177913 | None:intergenic | 35.0% | |
| CATATTTCCCTTATGTTAGG+GGG | + | chr3.4:83178367-83178386 | MS.gene013632:intron | 35.0% | |
| CCCACAGCAACAAATTATAA+TGG | - | chr3.4:83177051-83177070 | None:intergenic | 35.0% | |
| CTAATTGGCAAGTTTAGTCT+TGG | - | chr3.4:83177654-83177673 | None:intergenic | 35.0% | |
| CTTGGACTTGGAATTAATCT+TGG | - | chr3.4:83177594-83177613 | None:intergenic | 35.0% | |
| GAGCATATTTCCCTAAACAT+GGG | + | chr3.4:83178396-83178415 | MS.gene013632:intron | 35.0% | |
| GATCAAGCATCAATAATTGG+AGG | + | chr3.4:83177480-83177499 | MS.gene013632:CDS | 35.0% | |
| GGAGATCAAGCATCAATAAT+TGG | + | chr3.4:83177477-83177496 | MS.gene013632:CDS | 35.0% | |
| TACTACTCCAAAAGAGAATG+AGG | + | chr3.4:83176388-83176407 | MS.gene013632:CDS | 35.0% | |
| TATAGGCTAAAGTGCAACTT+TGG | + | chr3.4:83178171-83178190 | MS.gene013632:intron | 35.0% | |
| TCACAGTAAAAAACTGCACT+AGG | - | chr3.4:83178142-83178161 | None:intergenic | 35.0% | |
| TGAGGACAAATGTCTGAATA+AGG | - | chr3.4:83178610-83178629 | None:intergenic | 35.0% | |
| ! | AACTTTGAAAACTGCTGAGA+AGG | + | chr3.4:83178260-83178279 | MS.gene013632:intron | 35.0% |
| ! | ACCCTTTTGACATAAAAGCA+AGG | - | chr3.4:83176641-83176660 | None:intergenic | 35.0% |
| ! | ATGAGCACTTGTCTGTTTTA+AGG | + | chr3.4:83176606-83176625 | MS.gene013632:CDS | 35.0% |
| ! | CTCAGCAGTTTTCAAAGTTA+GGG | - | chr3.4:83178259-83178278 | None:intergenic | 35.0% |
| ! | CTTTTAACCCCCTAACATAA+GGG | - | chr3.4:83178377-83178396 | None:intergenic | 35.0% |
| ! | GACCCCTTATCTTTTCAAAA+TGG | - | chr3.4:83178309-83178328 | None:intergenic | 35.0% |
| ! | TCAGCAGTTTTCAAAGTTAG+GGG | - | chr3.4:83178258-83178277 | None:intergenic | 35.0% |
| ! | TCTCAGCAGTTTTCAAAGTT+AGG | - | chr3.4:83178260-83178279 | None:intergenic | 35.0% |
| ! | TCTTTTAACCCCCTAACATA+AGG | - | chr3.4:83178378-83178397 | None:intergenic | 35.0% |
| !! | AAGTTTAGTCTTGGACTTAG+AGG | - | chr3.4:83177645-83177664 | None:intergenic | 35.0% |
| !! | ATGTAGCTTTGTTGCATTCT+TGG | - | chr3.4:83177711-83177730 | None:intergenic | 35.0% |
| !! | CGCAACTTTTTGAAAGATAG+GGG | + | chr3.4:83178458-83178477 | MS.gene013632:intron | 35.0% |
| !! | GCAACTTTTTGAAAGATAGG+GGG | + | chr3.4:83178459-83178478 | MS.gene013632:intron | 35.0% |
| !! | GCATTGATTGCATAACTACA+AGG | - | chr3.4:83177292-83177311 | None:intergenic | 35.0% |
| !! | GCCTTGCTTTTATGTCAAAA+GGG | + | chr3.4:83176637-83176656 | MS.gene013632:CDS | 35.0% |
| !! | GGCCATTTTGAAAAGATAAG+GGG | + | chr3.4:83178304-83178323 | MS.gene013632:intron | 35.0% |
| !! | GGGCCATTTTGAAAAGATAA+GGG | + | chr3.4:83178303-83178322 | MS.gene013632:intron | 35.0% |
| !! | TAAACGTACCTTGATAGTGA+AGG | - | chr3.4:83177994-83178013 | None:intergenic | 35.0% |
| !! | TGCCTTGCTTTTATGTCAAA+AGG | + | chr3.4:83176636-83176655 | MS.gene013632:CDS | 35.0% |
| !!! | TTCAAAATGGCCCCTTTTTT+TGG | - | chr3.4:83178296-83178315 | None:intergenic | 35.0% |
| ATATTTCACTGCACCTCTCT+GGG | + | chr3.4:83178554-83178573 | MS.gene013632:intron | 40.0% | |
| ATCTGTTCCTCAAGCAAAGT+TGG | - | chr3.4:83176518-83176537 | None:intergenic | 40.0% | |
| CATATTTCCCTAAACATGGG+GGG | + | chr3.4:83178399-83178418 | MS.gene013632:intron | 40.0% | |
| GATAGTGAAGGAGTTCAACA+TGG | - | chr3.4:83177982-83178001 | None:intergenic | 40.0% | |
| GATGCATGTTACATGTACCT+TGG | - | chr3.4:83178583-83178602 | None:intergenic | 40.0% | |
| GCATATTTCCCTAAACATGG+GGG | + | chr3.4:83178398-83178417 | MS.gene013632:intron | 40.0% | |
| GCTTCAACTTGATTGATGAG+AGG | - | chr3.4:83176368-83176387 | None:intergenic | 40.0% | |
| GGGTCAATGAGTGATTATGA+AGG | + | chr3.4:83176952-83176971 | MS.gene013632:intron | 40.0% | |
| GTTGAACTCCTTCACTATCA+AGG | + | chr3.4:83177983-83178002 | MS.gene013632:CDS | 40.0% | |
| TATATTTCACTGCACCTCTC+TGG | + | chr3.4:83178553-83178572 | MS.gene013632:intron | 40.0% | |
| TGCAATCAATGCATCGAAGA+TGG | + | chr3.4:83177300-83177319 | MS.gene013632:intron | 40.0% | |
| TGCACATCTAAGTATGGTAG+AGG | - | chr3.4:83176998-83177017 | None:intergenic | 40.0% | |
| TGTGGAGTTCTTGGACTAAT+TGG | - | chr3.4:83177669-83177688 | None:intergenic | 40.0% | |
| TTCCCCGAGAATAGAAAATC+CGG | - | chr3.4:83177268-83177287 | None:intergenic | 40.0% | |
| TTTCTTGGACTTAGTGGTGA+AGG | - | chr3.4:83177618-83177637 | None:intergenic | 40.0% | |
| ! | ACTGTTTCTCAACGAATTCC+AGG | + | chr3.4:83177873-83177892 | MS.gene013632:CDS | 40.0% |
| ! | AGCTTCTGTCTCTTCCTTTT+AGG | - | chr3.4:83176491-83176510 | None:intergenic | 40.0% |
| ! | ATCATTGACTGAGGAAGTAG+AGG | - | chr3.4:83177769-83177788 | None:intergenic | 40.0% |
| ! | CAGCAGTTTTCAAAGTTAGG+GGG | - | chr3.4:83178257-83178276 | None:intergenic | 40.0% |
| ! | GAACAGATTAACAGTGCTGA+TGG | + | chr3.4:83176530-83176549 | MS.gene013632:CDS | 40.0% |
| ! | GAAGTGACCTCATTCTCTTT+TGG | - | chr3.4:83176398-83176417 | None:intergenic | 40.0% |
| !! | GGGGCCATTTTGAAAAGATA+AGG | + | chr3.4:83178302-83178321 | MS.gene013632:intron | 40.0% |
| !! | TGTTGCATTCTTGGCTTGTA+AGG | - | chr3.4:83177702-83177721 | None:intergenic | 40.0% |
| !! | TTGTAAGGACTAGTTGGTTG+TGG | - | chr3.4:83177687-83177706 | None:intergenic | 40.0% |
| !! | TTTAGTCTTGGACTTAGAGG+TGG | - | chr3.4:83177642-83177661 | None:intergenic | 40.0% |
| AAAAAGAGCTGCGTGAATGC+AGG | - | chr3.4:83177075-83177094 | None:intergenic | 45.0% | |
| AAAGTCTCCTATTGCTGACG+TGG | + | chr3.4:83177815-83177834 | MS.gene013632:CDS | 45.0% | |
| ATGGTAGAGGTCACTTGTCT+AGG | - | chr3.4:83176985-83177004 | None:intergenic | 45.0% | |
| CAAGTTCTTCAGCACTCAGT+TGG | - | chr3.4:83178775-83178794 | None:intergenic | 45.0% | |
| CGACACGTGTCCAAAAAAAG+GGG | + | chr3.4:83178283-83178302 | MS.gene013632:intron | 45.0% | |
| CTAGTAGGAGATGGATCAAG+AGG | - | chr3.4:83177744-83177763 | None:intergenic | 45.0% | |
| CTAGTTGGTTGTGGAGTTCT+TGG | - | chr3.4:83177678-83177697 | None:intergenic | 45.0% | |
| GAGGAAGTAGAGGAACTAGT+AGG | - | chr3.4:83177759-83177778 | None:intergenic | 45.0% | |
| GATGGGGTGCATAAAGGAAA+TGG | - | chr3.4:83177436-83177455 | None:intergenic | 45.0% | |
| GCATTAGATGGGGTGCATAA+AGG | - | chr3.4:83177442-83177461 | None:intergenic | 45.0% | |
| GCGACACGTGTCCAAAAAAA+GGG | + | chr3.4:83178282-83178301 | MS.gene013632:intron | 45.0% | |
| GCTTACACCAACTTTGCTTG+AGG | + | chr3.4:83176508-83176527 | MS.gene013632:CDS | 45.0% | |
| GGTCACTTCAACATCGAGAT+TGG | + | chr3.4:83176409-83176428 | MS.gene013632:CDS | 45.0% | |
| GTAGAGGAACTAGTAGGAGA+TGG | - | chr3.4:83177753-83177772 | None:intergenic | 45.0% | |
| GTTTCTTAGCTTCAAGGGCT+TGG | - | chr3.4:83177542-83177561 | None:intergenic | 45.0% | |
| TATTTCACTGCACCTCTCTG+GGG | + | chr3.4:83178555-83178574 | MS.gene013632:intron | 45.0% | |
| TCCCCGAGAATAGAAAATCC+GGG | - | chr3.4:83177267-83177286 | None:intergenic | 45.0% | |
| TTACTATTTGTGCACGGACC+CGG | + | chr3.4:83177246-83177265 | MS.gene013632:intron | 45.0% | |
| TTCAGAATCTTGCAGCGAAG+AGG | - | chr3.4:83176450-83176469 | None:intergenic | 45.0% | |
| ! | ACCCGGATTTTCTATTCTCG+GGG | + | chr3.4:83177263-83177282 | MS.gene013632:intron | 45.0% |
| ! | GACCCGGATTTTCTATTCTC+GGG | + | chr3.4:83177262-83177281 | MS.gene013632:intron | 45.0% |
| ! | GGACCCGGATTTTCTATTCT+CGG | + | chr3.4:83177261-83177280 | MS.gene013632:intron | 45.0% |
| ! | GGACTTAGAGGTGGTTTTCT+TGG | - | chr3.4:83177633-83177652 | None:intergenic | 45.0% |
| ! | GGTGGTTTTCTTGGACTTAG+TGG | - | chr3.4:83177624-83177643 | None:intergenic | 45.0% |
| !! | AATTTTGGCCCCCCATGTTT+AGG | - | chr3.4:83178410-83178429 | None:intergenic | 45.0% |
| !! | ACAGTGCTGATGGACAACAA+AGG | + | chr3.4:83176540-83176559 | MS.gene013632:CDS | 45.0% |
| !! | ATTTTGGCCCCCCATGTTTA+GGG | - | chr3.4:83178409-83178428 | None:intergenic | 45.0% |
| !! | CAGTGCTGATGGACAACAAA+GGG | + | chr3.4:83176541-83176560 | MS.gene013632:CDS | 45.0% |
| !! | CTTGGCTTGTAAGGACTAGT+TGG | - | chr3.4:83177693-83177712 | None:intergenic | 45.0% |
| !! | ATTAATTTATTTATATAGAT+TGG | + | chr3.4:83178740-83178759 | MS.gene013632:intron | 5.0% |
| AGTGGTGAAGGTCTTGGACT+TGG | - | chr3.4:83177606-83177625 | None:intergenic | 50.0% | |
| GGACTTAGTGGTGAAGGTCT+TGG | - | chr3.4:83177612-83177631 | None:intergenic | 50.0% | |
| GGCGACACGTGTCCAAAAAA+AGG | + | chr3.4:83178281-83178300 | MS.gene013632:intron | 50.0% | |
| TTACTGTGGAGCGCAACAGA+AGG | + | chr3.4:83176573-83176592 | MS.gene013632:CDS | 50.0% | |
| TTGACCTCCACGTCAGCAAT+AGG | - | chr3.4:83177825-83177844 | None:intergenic | 50.0% | |
| ! | GACGTGGAGGTCAAGTTTTC+AGG | + | chr3.4:83177831-83177850 | MS.gene013632:CDS | 50.0% |
| GTCTCCTATTGCTGACGTGG+AGG | + | chr3.4:83177818-83177837 | MS.gene013632:CDS | 55.0% | |
| TGTACCTTGGCACCCCAGAG+AGG | - | chr3.4:83178570-83178589 | None:intergenic | 60.0% | |
| !! | TGCACCTCTCTGGGGTGCCA+AGG | + | chr3.4:83178563-83178582 | MS.gene013632:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 83176263 | 83178823 | 83176263 | ID=MS.gene013632 |
| chr3.4 | mRNA | 83176263 | 83178823 | 83176263 | ID=MS.gene013632.t1;Parent=MS.gene013632 |
| chr3.4 | exon | 83176263 | 83176658 | 83176263 | ID=MS.gene013632.t1.exon1;Parent=MS.gene013632.t1 |
| chr3.4 | CDS | 83176263 | 83176658 | 83176263 | ID=cds.MS.gene013632.t1;Parent=MS.gene013632.t1 |
| chr3.4 | exon | 83177477 | 83178004 | 83177477 | ID=MS.gene013632.t1.exon2;Parent=MS.gene013632.t1 |
| chr3.4 | CDS | 83177477 | 83178004 | 83177477 | ID=cds.MS.gene013632.t1;Parent=MS.gene013632.t1 |
| chr3.4 | exon | 83178758 | 83178823 | 83178758 | ID=MS.gene013632.t1.exon3;Parent=MS.gene013632.t1 |
| chr3.4 | CDS | 83178758 | 83178823 | 83178758 | ID=cds.MS.gene013632.t1;Parent=MS.gene013632.t1 |
| Gene Sequence |
| Protein sequence |
