AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene013646

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013646.t1 MTR_3g090430 98.355 304 4 1 1 303 29 332 0.0 617
MS.gene013646.t1 MTR_1g056810 57.353 136 37 4 13 128 3 137 1.36e-42 148
MS.gene013646.t1 MTR_2g093220 75.000 72 18 0 6 77 23 94 9.26e-33 122
MS.gene013646.t1 MTR_3g091820 74.324 74 17 1 4 77 26 97 4.63e-32 121
MS.gene013646.t1 MTR_4g461080 74.648 71 18 0 5 75 11 81 1.08e-30 117
MS.gene013646.t1 MTR_2g096740 53.608 97 44 1 5 101 59 154 4.26e-30 115
MS.gene013646.t1 MTR_2g096740 59.756 82 33 0 5 86 44 125 5.58e-30 115
MS.gene013646.t1 MTR_4g088580 85.455 55 8 0 25 79 57 111 8.16e-30 116
MS.gene013646.t1 MTR_8g027295 68.919 74 18 2 4 77 10 78 1.32e-29 114
MS.gene013646.t1 MTR_7g059400 64.865 74 26 0 4 77 57 130 2.41e-29 114
MS.gene013646.t1 MTR_4g022370 64.865 74 26 0 4 77 63 136 3.49e-29 114
MS.gene013646.t1 MTR_4g063780 63.514 74 27 0 4 77 56 129 6.02e-29 113
MS.gene013646.t1 MTR_8g479350 76.667 60 14 0 25 84 70 129 7.37e-29 113
MS.gene013646.t1 MTR_7g024670 74.242 66 14 1 22 84 76 141 9.50e-29 113
MS.gene013646.t1 MTR_1g077600 37.576 165 90 3 2 157 14 174 1.43e-28 111
MS.gene013646.t1 MTR_1g077600 37.576 165 90 3 2 157 14 174 1.78e-28 111
MS.gene013646.t1 MTR_8g068210 66.667 69 23 0 11 79 20 88 2.52e-28 112
MS.gene013646.t1 MTR_3g077750 73.333 60 16 0 14 73 52 111 4.06e-28 111
MS.gene013646.t1 MTR_2g014060 86.000 50 7 0 25 74 27 76 2.86e-27 108
MS.gene013646.t1 MTR_5g031440 85.714 49 7 0 25 73 45 93 9.07e-27 107
MS.gene013646.t1 MTR_4g109980 87.755 49 6 0 25 73 42 90 2.72e-26 105
MS.gene013646.t1 MTR_8g079060 56.962 79 34 0 25 103 31 109 7.84e-26 102
MS.gene013646.t1 MTR_8g015840 82.000 50 9 0 25 74 22 71 1.18e-25 102
MS.gene013646.t1 MTR_4g089095 76.786 56 12 1 24 79 51 105 1.40e-25 103
MS.gene013646.t1 MTR_2g059540 82.353 51 9 0 21 71 29 79 1.46e-25 101
MS.gene013646.t1 MTR_4g089095 76.786 56 12 1 24 79 17 71 1.75e-25 102
MS.gene013646.t1 MTR_2g013370 74.138 58 14 1 22 79 45 101 2.08e-25 102
MS.gene013646.t1 MTR_2g014170 84.000 50 8 0 22 71 44 93 2.20e-25 103
MS.gene013646.t1 MTR_3g435480 73.077 52 14 0 25 76 138 189 4.69e-24 101
MS.gene013646.t1 MTR_7g010950 68.421 57 17 1 20 76 133 188 7.05e-23 98.6
MS.gene013646.t1 MTR_6g012450 71.154 52 15 0 25 76 138 189 9.88e-23 98.2
MS.gene013646.t1 MTR_4g082060 59.155 71 27 2 6 76 107 175 3.14e-22 96.7
MS.gene013646.t1 MTR_2g016030 65.517 58 20 0 19 76 43 100 3.53e-22 91.3
MS.gene013646.t1 MTR_5g041420 56.338 71 29 2 6 76 123 191 5.13e-22 94.4
MS.gene013646.t1 MTR_8g044220 64.151 53 19 0 25 77 120 172 2.36e-21 94.0
MS.gene013646.t1 MTR_7g086780 67.308 52 17 0 25 76 101 152 2.38e-21 93.6
MS.gene013646.t1 MTR_6g027450 53.425 73 32 1 5 77 73 143 3.94e-21 92.0
MS.gene013646.t1 MTR_6g027460 54.167 72 31 1 5 76 80 149 5.68e-21 92.0
MS.gene013646.t1 MTR_5g041530 63.333 60 21 1 21 80 139 197 1.17e-20 91.3
MS.gene013646.t1 MTR_5g041400 55.714 70 24 1 7 76 110 172 4.01e-20 89.7
MS.gene013646.t1 MTR_5g041380 62.712 59 18 1 22 76 122 180 1.05e-19 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013646.t1 AT3G52440 61.864 118 31 3 15 127 13 121 3.41e-43 149
MS.gene013646.t1 AT3G52440 61.864 118 31 3 15 127 32 140 4.83e-43 149
MS.gene013646.t1 AT1G21340 56.618 136 45 6 3 129 15 145 1.07e-39 140
MS.gene013646.t1 AT5G60200 53.571 112 50 1 20 129 52 163 1.22e-34 126
MS.gene013646.t1 AT4G24060 78.125 64 14 0 14 77 44 107 2.15e-31 120
MS.gene013646.t1 AT2G28510 87.500 56 7 0 22 77 47 102 4.07e-31 118
MS.gene013646.t1 AT3G61850 76.562 64 13 1 14 77 55 116 1.96e-30 116
MS.gene013646.t1 AT3G61850 76.562 64 13 1 14 77 55 116 1.96e-30 116
MS.gene013646.t1 AT3G61850 76.562 64 13 1 14 77 67 128 2.49e-30 116
MS.gene013646.t1 AT3G61850 76.562 64 13 1 14 77 55 116 2.74e-30 116
MS.gene013646.t1 AT3G61850 76.562 64 13 1 14 77 67 128 3.81e-30 116
MS.gene013646.t1 AT2G37590 78.333 60 13 0 20 79 86 145 4.12e-30 116
MS.gene013646.t1 AT3G55370 75.000 64 16 0 17 80 70 133 1.00e-29 115
MS.gene013646.t1 AT3G55370 75.000 64 16 0 17 80 70 133 1.05e-29 115
MS.gene013646.t1 AT3G55370 75.000 64 16 0 17 80 115 178 1.47e-29 115
MS.gene013646.t1 AT1G07640 82.143 56 9 1 25 79 79 134 2.05e-29 114
MS.gene013646.t1 AT1G07640 82.143 56 9 1 25 79 87 142 2.75e-29 114
MS.gene013646.t1 AT1G07640 82.143 56 9 1 25 79 23 78 2.78e-29 113
MS.gene013646.t1 AT3G45610 49.107 112 51 3 20 126 37 147 7.03e-29 111
MS.gene013646.t1 AT5G02460 73.770 61 16 0 17 77 89 149 1.75e-28 113
MS.gene013646.t1 AT4G21050 57.831 83 35 0 25 107 26 108 1.89e-28 109
MS.gene013646.t1 AT5G60850 82.143 56 10 0 25 80 53 108 2.58e-28 111
MS.gene013646.t1 AT4G00940 85.185 54 8 0 24 77 69 122 3.67e-28 110
MS.gene013646.t1 AT4G00940 85.185 54 8 0 24 77 69 122 3.67e-28 110
MS.gene013646.t1 AT4G00940 85.185 54 8 0 24 77 69 122 3.67e-28 110
MS.gene013646.t1 AT5G65590 81.132 53 10 0 25 77 43 95 3.94e-28 110
MS.gene013646.t1 AT2G28810 76.364 55 13 0 20 74 74 128 1.04e-27 110
MS.gene013646.t1 AT1G28310 81.818 55 10 0 25 79 29 83 1.25e-27 109
MS.gene013646.t1 AT2G28810 76.364 55 13 0 20 74 91 145 1.73e-27 109
MS.gene013646.t1 AT1G28310 81.818 55 10 0 25 79 53 107 1.96e-27 109
MS.gene013646.t1 AT5G62940 71.212 66 18 1 8 73 59 123 2.85e-27 109
MS.gene013646.t1 AT1G64620 68.571 70 19 1 2 71 31 97 4.05e-27 108
MS.gene013646.t1 AT2G46590 78.947 57 10 1 14 70 61 115 5.85e-27 108
MS.gene013646.t1 AT1G51700 56.471 85 31 2 25 103 35 119 6.47e-27 104
MS.gene013646.t1 AT2G46590 91.489 47 4 0 24 70 81 127 7.45e-27 108
MS.gene013646.t1 AT3G21270 86.275 51 7 0 25 75 31 81 9.40e-27 104
MS.gene013646.t1 AT3G50410 77.358 53 12 0 25 77 32 84 2.75e-25 102
MS.gene013646.t1 AT4G38000 66.129 62 21 0 12 73 30 91 1.73e-24 99.8
MS.gene013646.t1 AT5G66940 70.370 54 16 0 24 77 33 86 8.91e-24 97.1
MS.gene013646.t1 AT1G69570 64.706 68 22 1 9 76 120 185 9.67e-24 100
MS.gene013646.t1 AT2G34140 71.154 52 15 0 25 76 60 111 4.34e-23 94.0
MS.gene013646.t1 AT1G29160 68.421 57 17 1 20 76 60 115 4.57e-23 94.0
MS.gene013646.t1 AT1G47655 78.723 47 10 0 25 71 31 77 7.23e-23 94.4
MS.gene013646.t1 AT4G21040 75.000 52 13 0 25 76 27 78 8.19e-23 94.7
MS.gene013646.t1 AT3G47500 71.154 52 15 0 25 76 112 163 8.23e-23 98.2
MS.gene013646.t1 AT1G26790 57.746 71 29 1 6 76 95 164 1.90e-22 96.3
MS.gene013646.t1 AT5G62430 54.930 71 31 1 6 76 38 107 5.02e-22 94.0
MS.gene013646.t1 AT5G39660 65.079 63 21 1 14 76 130 191 1.02e-21 95.1
MS.gene013646.t1 AT5G39660 65.079 63 21 1 14 76 130 191 1.02e-21 95.1
MS.gene013646.t1 AT5G39660 65.079 63 21 1 14 76 130 191 1.02e-21 95.1
MS.gene013646.t1 AT4G21080 71.154 52 15 0 25 76 27 78 1.08e-21 92.0
MS.gene013646.t1 AT4G21030 43.373 83 47 0 25 107 23 105 1.68e-15 73.9

Find 75 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATGAGGTTCATAATTA+TGG 0.189418 3.4:-82807589 MS.gene013646:CDS
TCACCATGATGAGTGCTATT+TGG 0.209784 3.4:+82807745 None:intergenic
GATGAGTGCTATTTGGATTT+TGG 0.211191 3.4:+82807752 None:intergenic
ATTATTGTAGTAACAGAATT+TGG 0.230505 3.4:+82808023 None:intergenic
GCAAAGGTTGTAGACGTTAT+TGG 0.239568 3.4:-82807972 MS.gene013646:CDS
TTCTCCGTTTCAACGCTTTC+GGG 0.242314 3.4:+82807640 None:intergenic
TAAGTGAAAGTTGGAATTCT+TGG 0.244522 3.4:-82807285 MS.gene013646:CDS
ATTCTCCGTTTCAACGCTTT+CGG 0.269550 3.4:+82807639 None:intergenic
GACCGTCTTTCCGCGAATTA+TGG 0.270747 3.4:-82807862 MS.gene013646:CDS
GATCAGTTTGAAGGGTTTCT+AGG 0.272563 3.4:-82807529 MS.gene013646:CDS
TAAATTGACACTAGTAGAAT+TGG 0.302955 3.4:+82807309 None:intergenic
GGTAATTCCATTTGTATCAT+TGG 0.309748 3.4:+82807403 None:intergenic
GAAGCACAACGAGGACAATT+AGG 0.359511 3.4:+82808054 None:intergenic
GAGAGCGAGGCTAATAATAA+TGG 0.378005 3.4:-82807706 MS.gene013646:CDS
TTGTTGCCATGTATAATTAT+TGG 0.378408 3.4:+82807432 None:intergenic
TCATCATGGTGATGAGGAAT+TGG 0.386158 3.4:-82807734 MS.gene013646:CDS
TATCACGCGAACCATTGTTT+TGG 0.390102 3.4:+82807809 None:intergenic
AAGTGAAAGTTGGAATTCTT+GGG 0.392557 3.4:-82807284 MS.gene013646:CDS
TGACAAATTGTTGATATTGT+TGG 0.392892 3.4:+82807669 None:intergenic
ATTTGTCCATTGAGGTTGTT+GGG 0.398492 3.4:+82808112 None:intergenic
TCAATTTAATAAGTGAAAGT+TGG 0.399372 3.4:-82807294 MS.gene013646:CDS
ATGTGGTACAAGATGTTCTA+TGG 0.409257 3.4:-82807495 MS.gene013646:CDS
TCCATTGAGGTTGTTGGGAA+TGG 0.426025 3.4:+82808117 None:intergenic
TTGCGGCAGCCACCGCCAAC+GGG 0.427583 3.4:+82807922 None:intergenic
ATTGAATATGATCAGTTTGA+AGG 0.427963 3.4:-82807538 MS.gene013646:CDS
CATCAAAAGGTTTCTGAGGC+TGG 0.436350 3.4:+82807605 None:intergenic
ATTACCAGGAGAGTTGGAAT+TGG 0.443432 3.4:-82807386 MS.gene013646:CDS
GGACCAAAGGTGGCTCTCTT+CGG 0.446025 3.4:-82807951 MS.gene013646:CDS
ACCACCACCAATGATACAAA+TGG 0.457520 3.4:-82807410 MS.gene013646:CDS
CTTCGGAATGTTCCCGTTGG+CGG 0.470284 3.4:-82807934 MS.gene013646:CDS
TAATTATGAACCTCATCAAA+AGG 0.476723 3.4:+82807592 None:intergenic
CGGAATGTTCCCGTTGGCGG+TGG 0.477735 3.4:-82807931 MS.gene013646:CDS
GTACCATTCTCATTATTCAA+TGG 0.481490 3.4:+82807340 None:intergenic
TTTGCGGCAGCCACCGCCAA+CGG 0.485880 3.4:+82807921 None:intergenic
ATTCCGAAGAGAGCCACCTT+TGG 0.486871 3.4:+82807948 None:intergenic
ATATTCATAGCATTAGAATC+AGG 0.491964 3.4:+82807472 None:intergenic
TCCATTTGTATCATTGGTGG+TGG 0.492349 3.4:+82807409 None:intergenic
GCCATTCCCAACAACCTCAA+TGG 0.494342 3.4:-82808118 MS.gene013646:CDS
CTTCTTCCAATAATTATACA+TGG 0.509902 3.4:-82807438 MS.gene013646:CDS
TTGAATATGATCAGTTTGAA+GGG 0.510238 3.4:-82807537 MS.gene013646:CDS
GATGAGGTTCATAATTATGG+AGG 0.510864 3.4:-82807586 MS.gene013646:CDS
AATGGAATTACCAGGAGAGT+TGG 0.513056 3.4:-82807392 MS.gene013646:CDS
TGAATTTGATTTGTCCATTG+AGG 0.513430 3.4:+82808104 None:intergenic
GACACCCGAAAGCGTTGAAA+CGG 0.518206 3.4:-82807644 MS.gene013646:CDS
AATTCCATTTGTATCATTGG+TGG 0.522083 3.4:+82807406 None:intergenic
ATCAGCAGAGCCATAATTCG+CGG 0.525005 3.4:+82807852 None:intergenic
AACATGAATTAAGTTTGAGT+GGG 0.525109 3.4:-82807561 MS.gene013646:CDS
TTGCCATTGAATAATGAGAA+TGG 0.531446 3.4:-82807343 MS.gene013646:CDS
GATTTGTCCATTGAGGTTGT+TGG 0.532932 3.4:+82808111 None:intergenic
TTCTGACCGCCTTTCCACGA+CGG 0.537387 3.4:+82807896 None:intergenic
TATTCCAATTCCAACTCTCC+TGG 0.541184 3.4:+82807382 None:intergenic
TTCTCATTATTCAATGGCAA+TGG 0.542279 3.4:+82807346 None:intergenic
ATGAGGTTCATAATTATGGA+GGG 0.547185 3.4:-82807585 MS.gene013646:CDS
GAACATGAATTAAGTTTGAG+TGG 0.551210 3.4:-82807562 MS.gene013646:CDS
TCTCTTCGGAATGTTCCCGT+TGG 0.557776 3.4:-82807937 MS.gene013646:CDS
AGCCATAATTCGCGGAAAGA+CGG 0.562712 3.4:+82807860 None:intergenic
AATCCAAATAGCACTCATCA+TGG 0.568770 3.4:-82807748 MS.gene013646:CDS
TTATTCAATGGCAATGGCAA+TGG 0.570708 3.4:+82807352 None:intergenic
ACCTCATCAAAAGGTTTCTG+AGG 0.573056 3.4:+82807601 None:intergenic
CAACCACGGTATTTCTGCAA+AGG 0.575852 3.4:-82807988 MS.gene013646:CDS
TGTAGACGTTATTGGACCAA+AGG 0.588786 3.4:-82807964 MS.gene013646:CDS
TGGACAAATCAAATTCAAAG+TGG 0.607924 3.4:-82808098 MS.gene013646:CDS
AGACGTTATTGGACCAAAGG+TGG 0.608980 3.4:-82807961 MS.gene013646:CDS
TGAGGTTCATAATTATGGAG+GGG 0.616763 3.4:-82807584 MS.gene013646:CDS
TAGCACTCATCATGGTGATG+AGG 0.617266 3.4:-82807740 MS.gene013646:CDS
TCTAGGTGTTGATGAAGATG+TGG 0.622739 3.4:-82807512 MS.gene013646:CDS
TTAGGAGCTATCTCAATGTG+TGG 0.628107 3.4:+82808072 None:intergenic
GGAATTGGAAATTGAGAGCG+AGG 0.633302 3.4:-82807719 MS.gene013646:CDS
CATCAGCAAAACCAAAACAA+TGG 0.640773 3.4:-82807820 MS.gene013646:CDS
ATGATACAAATGGAATTACC+AGG 0.647801 3.4:-82807400 MS.gene013646:CDS
TGAAACGGAGAATGATGCAG+TGG 0.672585 3.4:-82807629 MS.gene013646:CDS
CAACCTTTGCAGAAATACCG+TGG 0.687599 3.4:+82807985 None:intergenic
TGGTTCGCGTGATATAGACA+TGG 0.703930 3.4:-82807800 MS.gene013646:CDS
ATTATAGCTTGTCACAACCA+CGG 0.706519 3.4:-82808002 MS.gene013646:CDS
GTGTTTGATGAAGCACAACG+AGG 0.730421 3.4:+82808045 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTGTAGTAACAGAATT+TGG + chr3.4:82807331-82807350 None:intergenic 20.0%
!! TCAATTTAATAAGTGAAAGT+TGG - chr3.4:82808057-82808076 MS.gene013646:CDS 20.0%
! AACATGAATTAAGTTTGAGT+GGG - chr3.4:82807790-82807809 MS.gene013646:CDS 25.0%
! ATATTCATAGCATTAGAATC+AGG + chr3.4:82807882-82807901 None:intergenic 25.0%
! ATTGAATATGATCAGTTTGA+AGG - chr3.4:82807813-82807832 MS.gene013646:CDS 25.0%
! CTTCTTCCAATAATTATACA+TGG - chr3.4:82807913-82807932 MS.gene013646:CDS 25.0%
! TAAATTGACACTAGTAGAAT+TGG + chr3.4:82808045-82808064 None:intergenic 25.0%
! TAATTATGAACCTCATCAAA+AGG + chr3.4:82807762-82807781 None:intergenic 25.0%
! TGACAAATTGTTGATATTGT+TGG + chr3.4:82807685-82807704 None:intergenic 25.0%
! TTGAATATGATCAGTTTGAA+GGG - chr3.4:82807814-82807833 MS.gene013646:CDS 25.0%
! TTGTTGCCATGTATAATTAT+TGG + chr3.4:82807922-82807941 None:intergenic 25.0%
! TTTGATGAGGTTCATAATTA+TGG - chr3.4:82807762-82807781 MS.gene013646:CDS 25.0%
!! TTCTTTTGATCTTTCAACTA+TGG - chr3.4:82808091-82808110 MS.gene013646:CDS 25.0%
!!! TGGATTTTGGTTTAAGAATT+TGG + chr3.4:82807589-82807608 None:intergenic 25.0%
AAGTGAAAGTTGGAATTCTT+GGG - chr3.4:82808067-82808086 MS.gene013646:CDS 30.0%
AATTCCATTTGTATCATTGG+TGG + chr3.4:82807948-82807967 None:intergenic 30.0%
ATGAGGTTCATAATTATGGA+GGG - chr3.4:82807766-82807785 MS.gene013646:CDS 30.0%
ATGATACAAATGGAATTACC+AGG - chr3.4:82807951-82807970 MS.gene013646:CDS 30.0%
GAACATGAATTAAGTTTGAG+TGG - chr3.4:82807789-82807808 MS.gene013646:CDS 30.0%
GGTAATTCCATTTGTATCAT+TGG + chr3.4:82807951-82807970 None:intergenic 30.0%
GTACCATTCTCATTATTCAA+TGG + chr3.4:82808014-82808033 None:intergenic 30.0%
TAAGTGAAAGTTGGAATTCT+TGG - chr3.4:82808066-82808085 MS.gene013646:CDS 30.0%
TGGACAAATCAAATTCAAAG+TGG - chr3.4:82807253-82807272 MS.gene013646:CDS 30.0%
TTCTCATTATTCAATGGCAA+TGG + chr3.4:82808008-82808027 None:intergenic 30.0%
TTGCCATTGAATAATGAGAA+TGG - chr3.4:82808008-82808027 MS.gene013646:CDS 30.0%
!! TGAATTTGATTTGTCCATTG+AGG + chr3.4:82807250-82807269 None:intergenic 30.0%
AATCCAAATAGCACTCATCA+TGG - chr3.4:82807603-82807622 MS.gene013646:CDS 35.0%
ATGTGGTACAAGATGTTCTA+TGG - chr3.4:82807856-82807875 MS.gene013646:CDS 35.0%
ATTTGTCCATTGAGGTTGTT+GGG + chr3.4:82807242-82807261 None:intergenic 35.0%
CATCAGCAAAACCAAAACAA+TGG - chr3.4:82807531-82807550 MS.gene013646:CDS 35.0%
GATGAGGTTCATAATTATGG+AGG - chr3.4:82807765-82807784 MS.gene013646:CDS 35.0%
TGAGGTTCATAATTATGGAG+GGG - chr3.4:82807767-82807786 MS.gene013646:CDS 35.0%
TTATTCAATGGCAATGGCAA+TGG + chr3.4:82808002-82808021 None:intergenic 35.0%
! ATTATAGCTTGTCACAACCA+CGG - chr3.4:82807349-82807368 MS.gene013646:CDS 35.0%
!!! GATGAGTGCTATTTGGATTT+TGG + chr3.4:82807602-82807621 None:intergenic 35.0%
AATGGAATTACCAGGAGAGT+TGG - chr3.4:82807959-82807978 MS.gene013646:CDS 40.0%
ACCACCACCAATGATACAAA+TGG - chr3.4:82807941-82807960 MS.gene013646:CDS 40.0%
ACCTCATCAAAAGGTTTCTG+AGG + chr3.4:82807753-82807772 None:intergenic 40.0%
ATTACCAGGAGAGTTGGAAT+TGG - chr3.4:82807965-82807984 MS.gene013646:CDS 40.0%
ATTCTCCGTTTCAACGCTTT+CGG + chr3.4:82807715-82807734 None:intergenic 40.0%
GAGAGCGAGGCTAATAATAA+TGG - chr3.4:82807645-82807664 MS.gene013646:CDS 40.0%
GATCAGTTTGAAGGGTTTCT+AGG - chr3.4:82807822-82807841 MS.gene013646:CDS 40.0%
GATTTGTCCATTGAGGTTGT+TGG + chr3.4:82807243-82807262 None:intergenic 40.0%
GCAAAGGTTGTAGACGTTAT+TGG - chr3.4:82807379-82807398 MS.gene013646:CDS 40.0%
TATTCCAATTCCAACTCTCC+TGG + chr3.4:82807972-82807991 None:intergenic 40.0%
TCCATTTGTATCATTGGTGG+TGG + chr3.4:82807945-82807964 None:intergenic 40.0%
TGTAGACGTTATTGGACCAA+AGG - chr3.4:82807387-82807406 MS.gene013646:CDS 40.0%
TTAGGAGCTATCTCAATGTG+TGG + chr3.4:82807282-82807301 None:intergenic 40.0%
! TATCACGCGAACCATTGTTT+TGG + chr3.4:82807545-82807564 None:intergenic 40.0%
! TCACCATGATGAGTGCTATT+TGG + chr3.4:82807609-82807628 None:intergenic 40.0%
! TCATCATGGTGATGAGGAAT+TGG - chr3.4:82807617-82807636 MS.gene013646:CDS 40.0%
!! TCTAGGTGTTGATGAAGATG+TGG - chr3.4:82807839-82807858 MS.gene013646:CDS 40.0%
AGACGTTATTGGACCAAAGG+TGG - chr3.4:82807390-82807409 MS.gene013646:CDS 45.0%
AGCCATAATTCGCGGAAAGA+CGG + chr3.4:82807494-82807513 None:intergenic 45.0%
ATCAGCAGAGCCATAATTCG+CGG + chr3.4:82807502-82807521 None:intergenic 45.0%
CAACCTTTGCAGAAATACCG+TGG + chr3.4:82807369-82807388 None:intergenic 45.0%
GAAGCACAACGAGGACAATT+AGG + chr3.4:82807300-82807319 None:intergenic 45.0%
GGAATTGGAAATTGAGAGCG+AGG - chr3.4:82807632-82807651 MS.gene013646:CDS 45.0%
GTGTTTGATGAAGCACAACG+AGG + chr3.4:82807309-82807328 None:intergenic 45.0%
TCCATTGAGGTTGTTGGGAA+TGG + chr3.4:82807237-82807256 None:intergenic 45.0%
TGAAACGGAGAATGATGCAG+TGG - chr3.4:82807722-82807741 MS.gene013646:CDS 45.0%
TGGTTCGCGTGATATAGACA+TGG - chr3.4:82807551-82807570 MS.gene013646:CDS 45.0%
TTCTCCGTTTCAACGCTTTC+GGG + chr3.4:82807714-82807733 None:intergenic 45.0%
! CAACCACGGTATTTCTGCAA+AGG - chr3.4:82807363-82807382 MS.gene013646:CDS 45.0%
! GCCTCAGAAACCTTTTGATG+AGG - chr3.4:82807749-82807768 MS.gene013646:CDS 45.0%
! TAGCACTCATCATGGTGATG+AGG - chr3.4:82807611-82807630 MS.gene013646:CDS 45.0%
!! CATCAAAAGGTTTCTGAGGC+TGG + chr3.4:82807749-82807768 None:intergenic 45.0%
ATTCCGAAGAGAGCCACCTT+TGG + chr3.4:82807406-82807425 None:intergenic 50.0%
CAAAAACCGTCGTGGAAAGG+CGG - chr3.4:82807449-82807468 MS.gene013646:CDS 50.0%
GACCGTCTTTCCGCGAATTA+TGG - chr3.4:82807489-82807508 MS.gene013646:CDS 50.0%
GCCATTCCCAACAACCTCAA+TGG - chr3.4:82807233-82807252 MS.gene013646:CDS 50.0%
TCTCTTCGGAATGTTCCCGT+TGG - chr3.4:82807414-82807433 MS.gene013646:CDS 50.0%
! CCTTTCCACGACGGTTTTTG+CGG + chr3.4:82807449-82807468 None:intergenic 50.0%
!! GACACCCGAAAGCGTTGAAA+CGG - chr3.4:82807707-82807726 MS.gene013646:CDS 50.0%
CCGCAAAAACCGTCGTGGAA+AGG - chr3.4:82807446-82807465 MS.gene013646:CDS 55.0%
CTTCGGAATGTTCCCGTTGG+CGG - chr3.4:82807417-82807436 MS.gene013646:CDS 55.0%
GGACCAAAGGTGGCTCTCTT+CGG - chr3.4:82807400-82807419 MS.gene013646:CDS 55.0%
TTCTGACCGCCTTTCCACGA+CGG + chr3.4:82807458-82807477 None:intergenic 55.0%
CGGAATGTTCCCGTTGGCGG+TGG - chr3.4:82807420-82807439 MS.gene013646:CDS 65.0%
GGCTGCCGCAAAAACCGTCG+TGG - chr3.4:82807441-82807460 MS.gene013646:CDS 65.0%
TTTGCGGCAGCCACCGCCAA+CGG + chr3.4:82807433-82807452 None:intergenic 65.0%
TTGCGGCAGCCACCGCCAAC+GGG + chr3.4:82807432-82807451 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 82807231 82808142 82807231 ID=MS.gene013646
chr3.4 mRNA 82807231 82808142 82807231 ID=MS.gene013646.t1;Parent=MS.gene013646
chr3.4 exon 82807231 82808142 82807231 ID=MS.gene013646.t1.exon1;Parent=MS.gene013646.t1
chr3.4 CDS 82807231 82808142 82807231 ID=cds.MS.gene013646.t1;Parent=MS.gene013646.t1
Gene Sequence

>MS.gene013646

ATGCCATTCCCAACAACCTCAATGGACAAATCAAATTCAAAGTGGAAACCACACATTGAGATAGCTCCTAATTGTCCTCGTTGTGCTTCATCAAACACCAAATTCTGTTACTACAATAATTATAGCTTGTCACAACCACGGTATTTCTGCAAAGGTTGTAGACGTTATTGGACCAAAGGTGGCTCTCTTCGGAATGTTCCCGTTGGCGGTGGCTGCCGCAAAAACCGTCGTGGAAAGGCGGTCAGAAATTCTCAGACTGACCGTCTTTCCGCGAATTATGGCTCTGCTGATGATGAAGATCATCAGCAAAACCAAAACAATGGTTCGCGTGATATAGACATGGCTGTTGTTTTTGCCAAATTCTTAAACCAAAATCCAAATAGCACTCATCATGGTGATGAGGAATTGGAAATTGAGAGCGAGGCTAATAATAATGGTTTGTCTTCTTCTTCCAACAATATCAACAATTTGTCATCGACACCCGAAAGCGTTGAAACGGAGAATGATGCAGTGGTCCAGCCTCAGAAACCTTTTGATGAGGTTCATAATTATGGAGGGGAACATGAATTAAGTTTGAGTGGGATTGAATATGATCAGTTTGAAGGGTTTCTAGGTGTTGATGAAGATGTGGTACAAGATGTTCTATGGCCTGATTCTAATGCTATGAATATGATGATGTCATCTTCTTCCAATAATTATACATGGCAACAACCACCACCAATGATACAAATGGAATTACCAGGAGAGTTGGAATTGGAATACTCAATGCCATTGCCATTGCCATTGAATAATGAGAATGGTACTATTAATTCCAATTCTACTAGTGTCAATTTAATAAGTGAAAGTTGGAATTCTTGGGATTCTTTTGATCTTTCAACTATGGAAGTCTTCTCTTCAAGTTCAAGACCTTAA
Protein sequence

>MS.gene013646.t1

MPFPTTSMDKSNSKWKPHIEIAPNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKAVRNSQTDRLSANYGSADDEDHQQNQNNGSRDIDMAVVFAKFLNQNPNSTHHGDEELEIESEANNNGLSSSSNNINNLSSTPESVETENDAVVQPQKPFDEVHNYGGEHELSLSGIEYDQFEGFLGVDEDVVQDVLWPDSNAMNMMMSSSSNNYTWQQPPPMIQMELPGELELEYSMPLPLPLNNENGTINSNSTSVNLISESWNSWDSFDLSTMEVFSSSSRP