Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013799.t1 | XP_003602063.1 | 98.5 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 7.60E-187 | 662.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013799.t1 | Q9XHZ8 | 68.1 | 323 | 101 | 2 | 4 | 326 | 5 | 325 | 2.4e-125 | 449.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013799.t1 | G7J501 | 98.5 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 5.5e-187 | 662.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013799.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013799.t1 | MTR_3g088560 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 674 |
| MS.gene013799.t1 | MTR_3g088560 | 97.951 | 244 | 5 | 0 | 84 | 327 | 14 | 257 | 3.29e-180 | 498 |
| MS.gene013799.t1 | MTR_3g088560 | 98.347 | 242 | 4 | 0 | 86 | 327 | 31 | 272 | 4.47e-179 | 496 |
| MS.gene013799.t1 | MTR_1g029850 | 73.171 | 328 | 81 | 4 | 1 | 323 | 1 | 326 | 4.23e-175 | 488 |
| MS.gene013799.t1 | MTR_3g088560 | 98.537 | 205 | 3 | 0 | 123 | 327 | 1 | 205 | 1.78e-150 | 421 |
| MS.gene013799.t1 | MTR_3g061090 | 51.250 | 320 | 152 | 4 | 4 | 321 | 7 | 324 | 1.25e-115 | 337 |
| MS.gene013799.t1 | MTR_5g096700 | 46.273 | 322 | 168 | 4 | 2 | 321 | 7 | 325 | 1.11e-96 | 289 |
| MS.gene013799.t1 | MTR_3g061090 | 50.598 | 251 | 121 | 3 | 72 | 321 | 4 | 252 | 1.96e-81 | 248 |
| MS.gene013799.t1 | MTR_5g096700 | 45.896 | 268 | 140 | 4 | 56 | 321 | 2 | 266 | 8.05e-74 | 229 |
| MS.gene013799.t1 | MTR_5g096790 | 36.747 | 332 | 178 | 11 | 5 | 321 | 8 | 322 | 7.80e-56 | 184 |
| MS.gene013799.t1 | MTR_7g094900 | 31.298 | 131 | 85 | 2 | 161 | 289 | 545 | 672 | 5.37e-12 | 67.0 |
| MS.gene013799.t1 | MTR_7g094910 | 31.298 | 131 | 85 | 2 | 161 | 289 | 526 | 653 | 7.64e-12 | 66.6 |
| MS.gene013799.t1 | MTR_3g088660 | 27.429 | 175 | 120 | 3 | 151 | 321 | 70 | 241 | 7.64e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013799.t1 | AT1G21780 | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.36e-163 | 459 |
| MS.gene013799.t1 | AT1G21780 | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.36e-163 | 459 |
| MS.gene013799.t1 | AT1G55760 | 48.297 | 323 | 162 | 4 | 2 | 322 | 5 | 324 | 8.93e-111 | 325 |
| MS.gene013799.t1 | AT2G39760 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.01e-14 | 73.6 |
| MS.gene013799.t1 | AT2G39760 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.08e-14 | 73.6 |
| MS.gene013799.t1 | AT2G39760 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.08e-14 | 73.6 |
| MS.gene013799.t1 | AT2G39760 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 3.81e-14 | 73.2 |
| MS.gene013799.t1 | AT5G13060 | 26.415 | 159 | 112 | 3 | 132 | 289 | 541 | 695 | 3.06e-11 | 64.7 |
| MS.gene013799.t1 | AT3G56230 | 27.219 | 169 | 117 | 4 | 157 | 321 | 107 | 273 | 8.63e-11 | 62.4 |
Find 64 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATTAACTAAACTATTC+TGG | 0.154757 | 3.4:+81481710 | None:intergenic |
| TTAACATTCTTATTTGAATT+TGG | 0.187991 | 3.4:-81481836 | MS.gene013799:CDS |
| TTAGAAACTTTAGAAGGTTC+TGG | 0.232000 | 3.4:+81484387 | None:intergenic |
| CCCTATCTGCGTGCTGAAAA+AGG | 0.234948 | 3.4:+81481777 | None:intergenic |
| AGAACCTTCTAAAGTTTCTA+AGG | 0.261667 | 3.4:-81484385 | MS.gene013799:CDS |
| CATTCATATGGCATATCTTT+AGG | 0.265199 | 3.4:+81482898 | None:intergenic |
| CAATTAAACAAGTAGATTTC+AGG | 0.285069 | 3.4:-81482021 | MS.gene013799:CDS |
| ATCCTTTCAAGCTCGGAATC+TGG | 0.336252 | 3.4:-81484553 | MS.gene013799:CDS |
| CAAGTGACATGTCTTCAATA+TGG | 0.337240 | 3.4:+81482080 | None:intergenic |
| CGCAGATAGGGAGCTAGTTA+TGG | 0.364760 | 3.4:-81481765 | MS.gene013799:CDS |
| ATTCTTCGTGTCTCCGTCGC+TGG | 0.376900 | 3.4:-81484339 | MS.gene013799:CDS |
| ACAATTAACTAAACTATTCT+GGG | 0.384725 | 3.4:+81481711 | None:intergenic |
| CTCTCCAACCATGGCGGATA+GGG | 0.391213 | 3.4:-81484645 | None:intergenic |
| CGCAAGTTTATTGTTTCTCC+TGG | 0.392552 | 3.4:-81484309 | MS.gene013799:intron |
| TGCTCCTTAGAAACTTTAGA+AGG | 0.406050 | 3.4:+81484381 | None:intergenic |
| GCAGCTAATAAGTATGATAT+TGG | 0.412726 | 3.4:-81481974 | MS.gene013799:CDS |
| GTCTATTGATACTGCTTTCG+TGG | 0.421744 | 3.4:-81482952 | MS.gene013799:CDS |
| CAGTTTATGAAAGGCTGCTT+AGG | 0.427187 | 3.4:-81482995 | MS.gene013799:CDS |
| GCTTTGAAACACAGGAGAAC+TGG | 0.434742 | 3.4:+81482144 | None:intergenic |
| GCTCTTCGAAGTTACTTGTA+TGG | 0.435203 | 3.4:-81482046 | MS.gene013799:CDS |
| GGACACAAGATGACTTTGTC+TGG | 0.443732 | 3.4:-81482974 | MS.gene013799:CDS |
| AAACACTGTCTTGCATTGCT+TGG | 0.456346 | 3.4:-81481998 | MS.gene013799:CDS |
| TAGCATCTCAAGAACATTGT+CGG | 0.467745 | 3.4:+81481904 | None:intergenic |
| CGGAGTTAATATCTTCAAGA+AGG | 0.472730 | 3.4:+81481924 | None:intergenic |
| CCTCATCGAGCATGCGGGAG+AGG | 0.478741 | 3.4:+81482236 | None:intergenic |
| TTAACTAAACTATTCTGGGT+TGG | 0.479406 | 3.4:+81481715 | None:intergenic |
| AGGAGAAACAATAAACTTGC+GGG | 0.481416 | 3.4:+81484311 | None:intergenic |
| CGAAGAATGAAACGAGCAAC+GGG | 0.482830 | 3.4:+81484354 | None:intergenic |
| ATTAGAAACTCACATTCATA+TGG | 0.483383 | 3.4:+81482886 | None:intergenic |
| TTGAGATGCTAAATGAGGCT+TGG | 0.487814 | 3.4:-81481892 | MS.gene013799:CDS |
| CGAGCATGCGGGAGAGGCAA+TGG | 0.488185 | 3.4:+81482242 | None:intergenic |
| CAGTTACACAAGTTAAAGAA+AGG | 0.488458 | 3.4:-81481863 | MS.gene013799:CDS |
| TCAAGCTCGGAATCTGGAAC+TGG | 0.498675 | 3.4:-81484547 | MS.gene013799:intron |
| AAATCTGATCCTTTCAAGCT+CGG | 0.501085 | 3.4:-81484560 | MS.gene013799:CDS |
| TCTCTCCAACCATGGCGGAT+AGG | 0.511002 | 3.4:-81484646 | None:intergenic |
| CATCGGCAGTGACAATGGTT+AGG | 0.526389 | 3.4:+81482200 | None:intergenic |
| GTAACTTCGAAGAGCAGTGC+AGG | 0.535264 | 3.4:+81482054 | None:intergenic |
| TGTTCTTGAGATGCTAAATG+AGG | 0.536700 | 3.4:-81481897 | MS.gene013799:CDS |
| TTCCAGATTCCGAGCTTGAA+AGG | 0.545788 | 3.4:+81484551 | None:intergenic |
| GCTAATAAGTATGATATTGG+TGG | 0.561832 | 3.4:-81481971 | MS.gene013799:CDS |
| AGTTCTATATGGTCATCTGA+TGG | 0.568409 | 3.4:-81482301 | MS.gene013799:CDS |
| GCTTGTATGCAGTTTATGAA+AGG | 0.570227 | 3.4:-81483004 | MS.gene013799:intron |
| TCTATTGATACTGCTTTCGT+GGG | 0.572445 | 3.4:-81482951 | MS.gene013799:CDS |
| GTGGTGAACCTAGTTCTATA+TGG | 0.574017 | 3.4:-81482312 | MS.gene013799:CDS |
| TCAGATGACCATATAGAACT+AGG | 0.576491 | 3.4:+81482304 | None:intergenic |
| GTGAGCTCTCAATGTACCAT+CGG | 0.581782 | 3.4:+81482183 | None:intergenic |
| TGTACCATCGGCAGTGACAA+TGG | 0.586089 | 3.4:+81482195 | None:intergenic |
| TGGTACATTGAGAGCTCACA+AGG | 0.587134 | 3.4:-81482179 | MS.gene013799:CDS |
| TATAGCCTCATCGAGCATGC+GGG | 0.592694 | 3.4:+81482231 | None:intergenic |
| ATTCAACATCAATGATGAAG+CGG | 0.594685 | 3.4:+81482928 | None:intergenic |
| TGAAACATGCTTTGAAACAC+AGG | 0.596849 | 3.4:+81482136 | None:intergenic |
| GTATAGCCTCATCGAGCATG+CGG | 0.598283 | 3.4:+81482230 | None:intergenic |
| CCTCTCCCGCATGCTCGATG+AGG | 0.599409 | 3.4:-81482236 | MS.gene013799:CDS |
| CTAACCATTGTCACTGCCGA+TGG | 0.602095 | 3.4:-81482199 | MS.gene013799:CDS |
| CAATGGAAAATCGAAAACTT+CGG | 0.614285 | 3.4:-81484599 | MS.gene013799:CDS |
| CATGTTTCATCACAACCTGA+AGG | 0.618326 | 3.4:-81482122 | MS.gene013799:CDS |
| CAGGAGAAACAATAAACTTG+CGG | 0.623649 | 3.4:+81484310 | None:intergenic |
| AGAATGAAACGAGCAACGGG+TGG | 0.627136 | 3.4:+81484357 | None:intergenic |
| AGTGTCAACCCTATCCGCCA+TGG | 0.645297 | 3.4:+81484637 | None:intergenic |
| ACGAAGAATGAAACGAGCAA+CGG | 0.645922 | 3.4:+81484353 | None:intergenic |
| GAATGAAACGAGCAACGGGT+GGG | 0.646859 | 3.4:+81484358 | None:intergenic |
| CTGTTGCAAGATTAGCACAA+TGG | 0.667299 | 3.4:-81484616 | MS.gene013799:CDS |
| CTTGCGGGAAGAACCAGCGA+CGG | 0.710933 | 3.4:+81484326 | None:intergenic |
| TGGTCTGAAAGATTTATGTG+AGG | 0.733733 | 3.4:-81481951 | MS.gene013799:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATAATTTTGATATAAAAA+AGG | + | chr3.4:81483881-81483900 | None:intergenic | 10.0% |
| !!! | GTAATTTTTTTTCATATAGA+TGG | - | chr3.4:81482180-81482199 | MS.gene013799:CDS | 15.0% |
| !!! | TTAACATTCTTATTTGAATT+TGG | - | chr3.4:81484523-81484542 | MS.gene013799:intron | 15.0% |
| !! | CAAAATTATAGCAATTATTC+CGG | - | chr3.4:81483890-81483909 | MS.gene013799:intron | 20.0% |
| !!! | ATTTAAAATAGTCTAAGTAG+TGG | + | chr3.4:81483845-81483864 | None:intergenic | 20.0% |
| !!! | TCAATTCGTTTTTTTTTTTC+AGG | - | chr3.4:81481904-81481923 | MS.gene013799:CDS | 20.0% |
| ! | AAACGACACTTTAGTAATTA+GGG | + | chr3.4:81483094-81483113 | None:intergenic | 25.0% |
| ! | AACAGTACTATTTGATATCT+TGG | + | chr3.4:81482687-81482706 | None:intergenic | 25.0% |
| ! | AACTGGAAAAATGAAAGAAA+AGG | - | chr3.4:81483716-81483735 | MS.gene013799:intron | 25.0% |
| ! | AAGAATTGAGAATATCTAGA+AGG | - | chr3.4:81482571-81482590 | MS.gene013799:intron | 25.0% |
| ! | ACAGTACTATTTGATATCTT+GGG | + | chr3.4:81482686-81482705 | None:intergenic | 25.0% |
| ! | ACATACAAATTTACGTTAGA+TGG | + | chr3.4:81482973-81482992 | None:intergenic | 25.0% |
| ! | ACTGGAAAAATGAAAGAAAA+GGG | - | chr3.4:81483717-81483736 | MS.gene013799:intron | 25.0% |
| ! | ATTAGAAACTCACATTCATA+TGG | + | chr3.4:81483476-81483495 | None:intergenic | 25.0% |
| ! | CAATTAAACAAGTAGATTTC+AGG | - | chr3.4:81484338-81484357 | MS.gene013799:CDS | 25.0% |
| ! | CGAATTTATCCAAATTAGAA+TGG | - | chr3.4:81482889-81482908 | MS.gene013799:intron | 25.0% |
| ! | GAGTTAGAAATTCATAATTC+TGG | + | chr3.4:81482209-81482228 | None:intergenic | 25.0% |
| ! | GTATTTGAGAAAACAAGTAT+AGG | + | chr3.4:81483500-81483519 | None:intergenic | 25.0% |
| ! | TATTCGAAATCTGGTAAATT+CGG | + | chr3.4:81482923-81482942 | None:intergenic | 25.0% |
| ! | TCAAATACCAATATTGATGT+AGG | - | chr3.4:81483512-81483531 | MS.gene013799:intron | 25.0% |
| !! | AACAAATAACGAAAAAGTGT+TGG | + | chr3.4:81482091-81482110 | None:intergenic | 25.0% |
| !! | ACTTTTCAATAGTAAGGAAT+AGG | - | chr3.4:81481928-81481947 | MS.gene013799:CDS | 25.0% |
| !! | AGATAATCCAGTAAATTTTG+TGG | + | chr3.4:81483661-81483680 | None:intergenic | 25.0% |
| !! | GCATTTTCATACACATTTAA+TGG | - | chr3.4:81482230-81482249 | MS.gene013799:CDS | 25.0% |
| !! | GCTTACTTGATTTGAAATTA+GGG | - | chr3.4:81482829-81482848 | MS.gene013799:intron | 25.0% |
| !! | TGCTTACTTGATTTGAAATT+AGG | - | chr3.4:81482828-81482847 | MS.gene013799:intron | 25.0% |
| !! | TGTATTTGATAACCTTGATT+AGG | - | chr3.4:81483010-81483029 | MS.gene013799:intron | 25.0% |
| !!! | GTTTTGAAACCATTCTAATT+TGG | + | chr3.4:81482901-81482920 | None:intergenic | 25.0% |
| !!! | TCAGATTTTTTGTAAGAACA+AGG | + | chr3.4:81481787-81481806 | None:intergenic | 25.0% |
| AAATGAAAGAAAAGGGTTGT+TGG | - | chr3.4:81483724-81483743 | MS.gene013799:intron | 30.0% | |
| AAGATCGCTAAAAAGTTACA+CGG | + | chr3.4:81483581-81483600 | None:intergenic | 30.0% | |
| AATACCAATATTGATGTAGG+TGG | - | chr3.4:81483515-81483534 | MS.gene013799:intron | 30.0% | |
| AATATTGTCAATTGGAATCG+TGG | - | chr3.4:81483772-81483791 | MS.gene013799:intron | 30.0% | |
| AATTATAGCAATTATTCCGG+AGG | - | chr3.4:81483893-81483912 | MS.gene013799:intron | 30.0% | |
| ACATAAAGATGCAATGATCA+AGG | + | chr3.4:81483208-81483227 | None:intergenic | 30.0% | |
| AGAACGTTAAAGTTTGTGTA+TGG | - | chr3.4:81482158-81482177 | MS.gene013799:CDS | 30.0% | |
| ATATAATGAAATGCTGATCC+AGG | - | chr3.4:81483320-81483339 | MS.gene013799:intron | 30.0% | |
| ATATTGTCAATTGGAATCGT+GGG | - | chr3.4:81483773-81483792 | MS.gene013799:intron | 30.0% | |
| ATCTTACTAGCTATTGTACT+CGG | - | chr3.4:81482602-81482621 | MS.gene013799:intron | 30.0% | |
| ATTATTCAACGAATGCGAAA+CGG | + | chr3.4:81482389-81482408 | None:intergenic | 30.0% | |
| ATTCAACATCAATGATGAAG+CGG | + | chr3.4:81483434-81483453 | None:intergenic | 30.0% | |
| CAAACGACACTTTAGTAATT+AGG | + | chr3.4:81483095-81483114 | None:intergenic | 30.0% | |
| CAATGGAAAATCGAAAACTT+CGG | - | chr3.4:81481760-81481779 | MS.gene013799:CDS | 30.0% | |
| CAGTTACACAAGTTAAAGAA+AGG | - | chr3.4:81484496-81484515 | MS.gene013799:intron | 30.0% | |
| CATTCATATGGCATATCTTT+AGG | + | chr3.4:81483464-81483483 | None:intergenic | 30.0% | |
| GCAGCTAATAAGTATGATAT+TGG | - | chr3.4:81484385-81484404 | MS.gene013799:CDS | 30.0% | |
| GCTAATAAGTATGATATTGG+TGG | - | chr3.4:81484388-81484407 | MS.gene013799:CDS | 30.0% | |
| GTCTCTAATAGAAATTGACT+CGG | - | chr3.4:81483032-81483051 | MS.gene013799:intron | 30.0% | |
| GTGTGCAAAATATTGTCAAT+TGG | - | chr3.4:81483764-81483783 | MS.gene013799:intron | 30.0% | |
| TCACTTGTATATTCGAAATC+TGG | + | chr3.4:81482932-81482951 | None:intergenic | 30.0% | |
| TTATGTGCTATGAGGAAATA+CGG | - | chr3.4:81483222-81483241 | MS.gene013799:intron | 30.0% | |
| TTCATATTGCATCCTCAATT+TGG | - | chr3.4:81483250-81483269 | MS.gene013799:intron | 30.0% | |
| TTCTATTAGAGACCTAATCA+AGG | + | chr3.4:81483025-81483044 | None:intergenic | 30.0% | |
| TTTGCCATTGCAATTATCTA+TGG | - | chr3.4:81483284-81483303 | MS.gene013799:intron | 30.0% | |
| ! | GATCTATTCTTTTGAACTCA+GGG | - | chr3.4:81484025-81484044 | MS.gene013799:intron | 30.0% |
| ! | TCAGGTACTTTTCAATAGTA+AGG | - | chr3.4:81481922-81481941 | MS.gene013799:CDS | 30.0% |
| ! | TGATCTATTCTTTTGAACTC+AGG | - | chr3.4:81484024-81484043 | MS.gene013799:intron | 30.0% |
| ! | TGTTTTGCATGCATTATAAC+TGG | - | chr3.4:81483699-81483718 | MS.gene013799:intron | 30.0% |
| ! | TTAGAAACTTTAGAAGGTTC+TGG | + | chr3.4:81481975-81481994 | None:intergenic | 30.0% |
| !! | AGAACCTTCTAAAGTTTCTA+AGG | - | chr3.4:81481974-81481993 | MS.gene013799:CDS | 30.0% |
| !! | TAGTCTAAGTAGTGGATAAT+AGG | + | chr3.4:81483837-81483856 | None:intergenic | 30.0% |
| AAAATATGATACCAGTGCAG+AGG | + | chr3.4:81483988-81484007 | None:intergenic | 35.0% | |
| AAATATGATACCAGTGCAGA+GGG | + | chr3.4:81483987-81484006 | None:intergenic | 35.0% | |
| AAATCTGATCCTTTCAAGCT+CGG | - | chr3.4:81481799-81481818 | MS.gene013799:CDS | 35.0% | |
| ACAAGCAAACAAAAATGACC+TGG | + | chr3.4:81483341-81483360 | None:intergenic | 35.0% | |
| ACTGCCATAGATAATTGCAA+TGG | + | chr3.4:81483291-81483310 | None:intergenic | 35.0% | |
| AGGAGAAACAATAAACTTGC+GGG | + | chr3.4:81482051-81482070 | None:intergenic | 35.0% | |
| AGTGGATAATAGGAAGTTCA+CGG | + | chr3.4:81483827-81483846 | None:intergenic | 35.0% | |
| AGTTCTATATGGTCATCTGA+TGG | - | chr3.4:81484058-81484077 | MS.gene013799:intron | 35.0% | |
| ATTCCTCATTTGCCAAATTG+AGG | + | chr3.4:81483265-81483284 | None:intergenic | 35.0% | |
| CAAGTGACATGTCTTCAATA+TGG | + | chr3.4:81484282-81484301 | None:intergenic | 35.0% | |
| CAGGAGAAACAATAAACTTG+CGG | + | chr3.4:81482052-81482071 | None:intergenic | 35.0% | |
| CGATCATCTTCAACAATACT+CGG | + | chr3.4:81482358-81482377 | None:intergenic | 35.0% | |
| CGGAGTTAATATCTTCAAGA+AGG | + | chr3.4:81484438-81484457 | None:intergenic | 35.0% | |
| CTGGATTATCTTGTGTATTG+TGG | - | chr3.4:81483670-81483689 | MS.gene013799:intron | 35.0% | |
| CTGTTTGATTACCAATACAC+AGG | - | chr3.4:81483603-81483622 | MS.gene013799:intron | 35.0% | |
| GCATAGAATACCATTTCAAG+CGG | + | chr3.4:81483168-81483187 | None:intergenic | 35.0% | |
| GCTTGTATGCAGTTTATGAA+AGG | - | chr3.4:81483355-81483374 | MS.gene013799:intron | 35.0% | |
| GGCTATAGGAAAATAACACA+TGG | - | chr3.4:81482454-81482473 | MS.gene013799:intron | 35.0% | |
| TAAGCCACCTACATCAATAT+TGG | + | chr3.4:81483522-81483541 | None:intergenic | 35.0% | |
| TACAAGACTCAAACACCTTA+AGG | - | chr3.4:81482513-81482532 | MS.gene013799:intron | 35.0% | |
| TAGCATCTCAAGAACATTGT+CGG | + | chr3.4:81484458-81484477 | None:intergenic | 35.0% | |
| TCAGATGACCATATAGAACT+AGG | + | chr3.4:81484058-81484077 | None:intergenic | 35.0% | |
| TCTATTGATACTGCTTTCGT+GGG | - | chr3.4:81483408-81483427 | MS.gene013799:intron | 35.0% | |
| TCTCTATCCAATGTCTTAGA+CGG | - | chr3.4:81483116-81483135 | MS.gene013799:intron | 35.0% | |
| TGATGTGCCACAAAATTTAC+TGG | - | chr3.4:81483651-81483670 | MS.gene013799:intron | 35.0% | |
| TGCTCCTTAGAAACTTTAGA+AGG | + | chr3.4:81481981-81482000 | None:intergenic | 35.0% | |
| TGGTCTGAAAGATTTATGTG+AGG | - | chr3.4:81484408-81484427 | MS.gene013799:CDS | 35.0% | |
| TGGTGCATATTTACTTTACC+AGG | + | chr3.4:81482071-81482090 | None:intergenic | 35.0% | |
| TGTTCTTGAGATGCTAAATG+AGG | - | chr3.4:81484462-81484481 | MS.gene013799:intron | 35.0% | |
| TTAGGAAATTCCGCTTGAAA+TGG | - | chr3.4:81483155-81483174 | MS.gene013799:intron | 35.0% | |
| TTGAAATGGTATTCTATGCC+TGG | - | chr3.4:81483169-81483188 | MS.gene013799:intron | 35.0% | |
| TTGCATCTTTATGTGCTATG+AGG | - | chr3.4:81483214-81483233 | MS.gene013799:intron | 35.0% | |
| ! | CGAGTATTGTTGAAGATGAT+CGG | - | chr3.4:81482356-81482375 | MS.gene013799:intron | 35.0% |
| ! | TGTTTCTGTTATGGTCCATA+TGG | - | chr3.4:81482419-81482438 | MS.gene013799:intron | 35.0% |
| ! | TTATTTTCCTATAGCCCACA+TGG | + | chr3.4:81482450-81482469 | None:intergenic | 35.0% |
| !! | AGGTTCTGGAAAAAGATGAA+TGG | + | chr3.4:81481961-81481980 | None:intergenic | 35.0% |
| !! | CTATTGTACTCGGTTTGTTA+GGG | - | chr3.4:81482612-81482631 | MS.gene013799:intron | 35.0% |
| !! | TGAAACATGCTTTGAAACAC+AGG | + | chr3.4:81484226-81484245 | None:intergenic | 35.0% |
| AAACACTGTCTTGCATTGCT+TGG | - | chr3.4:81484361-81484380 | MS.gene013799:CDS | 40.0% | |
| AACATGCAAGTCCTGTGTAT+TGG | + | chr3.4:81483617-81483636 | None:intergenic | 40.0% | |
| AAGAGTCAACTCCTCAAGTT+AGG | - | chr3.4:81482477-81482496 | MS.gene013799:intron | 40.0% | |
| AATATGATACCAGTGCAGAG+GGG | + | chr3.4:81483986-81484005 | None:intergenic | 40.0% | |
| ACAATACTCGGTAGCATTTG+TGG | + | chr3.4:81482346-81482365 | None:intergenic | 40.0% | |
| ACGAAGAATGAAACGAGCAA+CGG | + | chr3.4:81482009-81482028 | None:intergenic | 40.0% | |
| AGAGTCAACTCCTCAAGTTA+GGG | - | chr3.4:81482478-81482497 | MS.gene013799:intron | 40.0% | |
| ATGCAATGATCAAGGAAGAC+AGG | + | chr3.4:81483200-81483219 | None:intergenic | 40.0% | |
| CAGTGTCAGTTCTGTATACA+GGG | + | chr3.4:81483961-81483980 | None:intergenic | 40.0% | |
| CAGTTTATGAAAGGCTGCTT+AGG | - | chr3.4:81483364-81483383 | MS.gene013799:intron | 40.0% | |
| CATCCTCAATTTGGCAAATG+AGG | - | chr3.4:81483259-81483278 | MS.gene013799:intron | 40.0% | |
| CATGTTTCATCACAACCTGA+AGG | - | chr3.4:81484237-81484256 | MS.gene013799:intron | 40.0% | |
| CTATTCAAGAGATCATCCTC+CGG | + | chr3.4:81483912-81483931 | None:intergenic | 40.0% | |
| CTGTTGCAAGATTAGCACAA+TGG | - | chr3.4:81481743-81481762 | MS.gene013799:CDS | 40.0% | |
| GCTCTTCGAAGTTACTTGTA+TGG | - | chr3.4:81484313-81484332 | MS.gene013799:CDS | 40.0% | |
| GGATCGACTATAGTGATCTT+AGG | - | chr3.4:81483137-81483156 | MS.gene013799:intron | 40.0% | |
| GTCTATTGATACTGCTTTCG+TGG | - | chr3.4:81483407-81483426 | MS.gene013799:intron | 40.0% | |
| GTGGATAATAGGAAGTTCAC+GGG | + | chr3.4:81483826-81483845 | None:intergenic | 40.0% | |
| TAGGCTGCACATAATCCTTA+AGG | + | chr3.4:81482531-81482550 | None:intergenic | 40.0% | |
| TCAGTGTCAGTTCTGTATAC+AGG | + | chr3.4:81483962-81483981 | None:intergenic | 40.0% | |
| TGCAATGATCAAGGAAGACA+GGG | + | chr3.4:81483199-81483218 | None:intergenic | 40.0% | |
| TTAAGGATTATGTGCAGCCT+AGG | - | chr3.4:81482530-81482549 | MS.gene013799:intron | 40.0% | |
| TTGAGATGCTAAATGAGGCT+TGG | - | chr3.4:81484467-81484486 | MS.gene013799:intron | 40.0% | |
| ! | CGCAAGTTTATTGTTTCTCC+TGG | - | chr3.4:81482050-81482069 | MS.gene013799:CDS | 40.0% |
| ! | CTATTCTTTTGAACTCAGGG+TGG | - | chr3.4:81484028-81484047 | MS.gene013799:intron | 40.0% |
| ! | GCTATTGTACTCGGTTTGTT+AGG | - | chr3.4:81482611-81482630 | MS.gene013799:intron | 40.0% |
| ! | TTGACGACTCTTTTTCCTTC+AGG | + | chr3.4:81484255-81484274 | None:intergenic | 40.0% |
| !! | GTGGTGAACCTAGTTCTATA+TGG | - | chr3.4:81484047-81484066 | MS.gene013799:intron | 40.0% |
| AGCATTTGTGGTGGTTCGTA+GGG | + | chr3.4:81482334-81482353 | None:intergenic | 45.0% | |
| ATACTCGGTAGCATTTGTGG+TGG | + | chr3.4:81482343-81482362 | None:intergenic | 45.0% | |
| ATATCTTGGGCACTCCATAC+GGG | + | chr3.4:81482673-81482692 | None:intergenic | 45.0% | |
| ATCCTTTCAAGCTCGGAATC+TGG | - | chr3.4:81481806-81481825 | MS.gene013799:CDS | 45.0% | |
| CAATGATCAAGGAAGACAGG+GGG | + | chr3.4:81483197-81483216 | None:intergenic | 45.0% | |
| CGAAGAATGAAACGAGCAAC+GGG | + | chr3.4:81482008-81482027 | None:intergenic | 45.0% | |
| CGACTCAATCACTTTGTGCT+GGG | + | chr3.4:81483558-81483577 | None:intergenic | 45.0% | |
| GATATCTTGGGCACTCCATA+CGG | + | chr3.4:81482674-81482693 | None:intergenic | 45.0% | |
| GCAATGATCAAGGAAGACAG+GGG | + | chr3.4:81483198-81483217 | None:intergenic | 45.0% | |
| GGACACAAGATGACTTTGTC+TGG | - | chr3.4:81483385-81483404 | MS.gene013799:intron | 45.0% | |
| GGATTCCCTCTAACAGAATC+GGG | + | chr3.4:81482652-81482671 | None:intergenic | 45.0% | |
| GGGATTCCCTCTAACAGAAT+CGG | + | chr3.4:81482653-81482672 | None:intergenic | 45.0% | |
| GTGAGCTCTCAATGTACCAT+CGG | + | chr3.4:81484179-81484198 | None:intergenic | 45.0% | |
| GTTCTCTTGACCCTAACTTG+AGG | + | chr3.4:81482491-81482510 | None:intergenic | 45.0% | |
| TAGCATTTGTGGTGGTTCGT+AGG | + | chr3.4:81482335-81482354 | None:intergenic | 45.0% | |
| TCCATATGGATCAGCCATGT+GGG | - | chr3.4:81482433-81482452 | MS.gene013799:intron | 45.0% | |
| TGGTACATTGAGAGCTCACA+AGG | - | chr3.4:81484180-81484199 | MS.gene013799:intron | 45.0% | |
| TGTCACCCGATTCTGTTAGA+GGG | - | chr3.4:81482644-81482663 | MS.gene013799:intron | 45.0% | |
| TTCCAGATTCCGAGCTTGAA+AGG | + | chr3.4:81481811-81481830 | None:intergenic | 45.0% | |
| ! | AGTCGATCCGTCTAAGACAT+TGG | + | chr3.4:81483126-81483145 | None:intergenic | 45.0% |
| ! | GCAGTGCAGTGTTTCTGTTA+TGG | - | chr3.4:81482410-81482429 | MS.gene013799:intron | 45.0% |
| !! | GCTTTGAAACACAGGAGAAC+TGG | + | chr3.4:81484218-81484237 | None:intergenic | 45.0% |
| !!! | ACCTTTTTCAGCACGCAGAT+AGG | - | chr3.4:81484581-81484600 | MS.gene013799:CDS | 45.0% |
| !!! | CCTTTTTCAGCACGCAGATA+GGG | - | chr3.4:81484582-81484601 | MS.gene013799:CDS | 45.0% |
| AGAATGAAACGAGCAACGGG+TGG | + | chr3.4:81482005-81482024 | None:intergenic | 50.0% | |
| ATTTGTGGTGGTTCGTAGGG+CGG | + | chr3.4:81482331-81482350 | None:intergenic | 50.0% | |
| CATCGGCAGTGACAATGGTT+AGG | + | chr3.4:81484162-81484181 | None:intergenic | 50.0% | |
| CCCTATCTGCGTGCTGAAAA+AGG | + | chr3.4:81484585-81484604 | None:intergenic | 50.0% | |
| CGCAGATAGGGAGCTAGTTA+TGG | - | chr3.4:81484594-81484613 | MS.gene013799:CDS | 50.0% | |
| CTAACCATTGTCACTGCCGA+TGG | - | chr3.4:81484160-81484179 | MS.gene013799:intron | 50.0% | |
| CTCTAACAGAATCGGGTGAC+AGG | + | chr3.4:81482645-81482664 | None:intergenic | 50.0% | |
| CTGTCACCCGATTCTGTTAG+AGG | - | chr3.4:81482643-81482662 | MS.gene013799:intron | 50.0% | |
| CTGTTAGAGGGAATCCCGTA+TGG | - | chr3.4:81482656-81482675 | MS.gene013799:intron | 50.0% | |
| GAATGAAACGAGCAACGGGT+GGG | + | chr3.4:81482004-81482023 | None:intergenic | 50.0% | |
| GCGACTCAATCACTTTGTGC+TGG | + | chr3.4:81483559-81483578 | None:intergenic | 50.0% | |
| GTAACTTCGAAGAGCAGTGC+AGG | + | chr3.4:81484308-81484327 | None:intergenic | 50.0% | |
| GTATAGCCTCATCGAGCATG+CGG | + | chr3.4:81484132-81484151 | None:intergenic | 50.0% | |
| GTCCATATGGATCAGCCATG+TGG | - | chr3.4:81482432-81482451 | MS.gene013799:intron | 50.0% | |
| TATAGCCTCATCGAGCATGC+GGG | + | chr3.4:81484131-81484150 | None:intergenic | 50.0% | |
| TGTACCATCGGCAGTGACAA+TGG | + | chr3.4:81484167-81484186 | None:intergenic | 50.0% | |
| ! | TCAAGCTCGGAATCTGGAAC+TGG | - | chr3.4:81481812-81481831 | MS.gene013799:CDS | 50.0% |
| ATGTGCAGCCTAGGAGCAAG+CGG | - | chr3.4:81482539-81482558 | MS.gene013799:intron | 55.0% | |
| ATTCTTCGTGTCTCCGTCGC+TGG | - | chr3.4:81482020-81482039 | MS.gene013799:CDS | 55.0% | |
| CAGACATACCGCTTGCTCCT+AGG | + | chr3.4:81482550-81482569 | None:intergenic | 55.0% | |
| GCCCACATGGCTGATCCATA+TGG | + | chr3.4:81482437-81482456 | None:intergenic | 55.0% | |
| ! | GGATCAGCCATGTGGGCTAT+AGG | - | chr3.4:81482440-81482459 | MS.gene013799:intron | 55.0% |
| CTTGCGGGAAGAACCAGCGA+CGG | + | chr3.4:81482036-81482055 | None:intergenic | 60.0% | |
| GACACTGAACCCCTCTGCAC+TGG | - | chr3.4:81483974-81483993 | MS.gene013799:intron | 60.0% | |
| CCTCATCGAGCATGCGGGAG+AGG | + | chr3.4:81484126-81484145 | None:intergenic | 65.0% | |
| CCTCTCCCGCATGCTCGATG+AGG | - | chr3.4:81484123-81484142 | MS.gene013799:intron | 65.0% | |
| CGAGCATGCGGGAGAGGCAA+TGG | + | chr3.4:81484120-81484139 | None:intergenic | 65.0% | |
| GGTTCGTAGGGCGGCGTGAA+AGG | + | chr3.4:81482322-81482341 | None:intergenic | 65.0% | |
| !! | CAAGGAAGACAGGGGGCACC+AGG | + | chr3.4:81483190-81483209 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 81481724 | 81484657 | 81481724 | ID=MS.gene013799 |
| chr3.4 | mRNA | 81481724 | 81484657 | 81481724 | ID=MS.gene013799.t1;Parent=MS.gene013799 |
| chr3.4 | exon | 81484548 | 81484657 | 81484548 | ID=MS.gene013799.t1.exon1;Parent=MS.gene013799.t1 |
| chr3.4 | CDS | 81484548 | 81484657 | 81484548 | ID=cds.MS.gene013799.t1;Parent=MS.gene013799.t1 |
| chr3.4 | exon | 81484310 | 81484455 | 81484310 | ID=MS.gene013799.t1.exon2;Parent=MS.gene013799.t1 |
| chr3.4 | CDS | 81484310 | 81484455 | 81484310 | ID=cds.MS.gene013799.t1;Parent=MS.gene013799.t1 |
| chr3.4 | exon | 81482899 | 81483014 | 81482899 | ID=MS.gene013799.t1.exon3;Parent=MS.gene013799.t1 |
| chr3.4 | CDS | 81482899 | 81483014 | 81482899 | ID=cds.MS.gene013799.t1;Parent=MS.gene013799.t1 |
| chr3.4 | exon | 81481724 | 81482335 | 81481724 | ID=MS.gene013799.t1.exon4;Parent=MS.gene013799.t1 |
| chr3.4 | CDS | 81481724 | 81482335 | 81481724 | ID=cds.MS.gene013799.t1;Parent=MS.gene013799.t1 |
| Gene Sequence |
| Protein sequence |
