Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013809.t1 | XP_003602071.2 | 93.7 | 239 | 11 | 1 | 1 | 239 | 1 | 235 | 8.80E-92 | 346.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013809.t1 | O80365 | 57.1 | 156 | 52 | 3 | 19 | 173 | 6 | 147 | 6.5e-43 | 175.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013809.t1 | B7FMM2 | 93.7 | 239 | 11 | 1 | 1 | 239 | 1 | 235 | 6.3e-92 | 346.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013809.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013809.t1 | MTR_3g088630 | 95.397 | 239 | 7 | 1 | 1 | 239 | 1 | 235 | 2.68e-163 | 451 |
| MS.gene013809.t1 | MTR_8g038620 | 54.494 | 178 | 66 | 2 | 19 | 195 | 6 | 169 | 3.06e-59 | 185 |
| MS.gene013809.t1 | MTR_7g490310 | 54.706 | 170 | 58 | 5 | 22 | 186 | 9 | 164 | 2.59e-54 | 174 |
| MS.gene013809.t1 | MTR_3g015490 | 56.209 | 153 | 50 | 3 | 22 | 173 | 4 | 140 | 4.19e-51 | 164 |
| MS.gene013809.t1 | MTR_5g036480 | 45.745 | 188 | 82 | 5 | 20 | 205 | 14 | 183 | 1.02e-48 | 160 |
| MS.gene013809.t1 | MTR_3g093860 | 53.472 | 144 | 48 | 2 | 23 | 166 | 19 | 143 | 4.11e-48 | 156 |
| MS.gene013809.t1 | MTR_3g078613 | 50.649 | 154 | 53 | 3 | 21 | 173 | 22 | 153 | 1.22e-47 | 156 |
| MS.gene013809.t1 | MTR_3g078613 | 49.677 | 155 | 54 | 3 | 21 | 173 | 22 | 154 | 4.17e-47 | 155 |
| MS.gene013809.t1 | MTR_1g049100 | 53.289 | 152 | 50 | 4 | 20 | 170 | 6 | 137 | 2.49e-46 | 153 |
| MS.gene013809.t1 | MTR_4g106590 | 48.387 | 155 | 56 | 3 | 21 | 173 | 25 | 157 | 6.53e-44 | 147 |
| MS.gene013809.t1 | MTR_6g007460 | 39.269 | 219 | 57 | 4 | 19 | 183 | 8 | 204 | 1.13e-43 | 146 |
| MS.gene013809.t1 | MTR_4g051330 | 66.038 | 53 | 18 | 0 | 121 | 173 | 77 | 129 | 8.08e-19 | 80.5 |
| MS.gene013809.t1 | MTR_1g067110 | 31.034 | 116 | 79 | 1 | 99 | 213 | 131 | 246 | 9.79e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013809.t1 | AT2G41310 | 58.170 | 153 | 49 | 3 | 22 | 173 | 9 | 147 | 6.16e-59 | 186 |
| MS.gene013809.t1 | AT3G57040 | 57.051 | 156 | 54 | 3 | 19 | 173 | 6 | 149 | 1.84e-56 | 180 |
| MS.gene013809.t1 | AT3G57040 | 57.051 | 156 | 54 | 3 | 19 | 173 | 6 | 149 | 1.84e-56 | 180 |
| MS.gene013809.t1 | AT1G59940 | 47.647 | 170 | 66 | 3 | 11 | 179 | 22 | 169 | 4.55e-49 | 161 |
| MS.gene013809.t1 | AT3G48100 | 51.592 | 157 | 54 | 3 | 22 | 177 | 25 | 160 | 1.74e-47 | 155 |
| MS.gene013809.t1 | AT1G59940 | 47.647 | 170 | 66 | 3 | 11 | 179 | 114 | 261 | 2.35e-47 | 159 |
| MS.gene013809.t1 | AT1G10470 | 50.000 | 162 | 58 | 3 | 17 | 177 | 15 | 154 | 4.77e-47 | 156 |
| MS.gene013809.t1 | AT5G62920 | 53.947 | 152 | 47 | 3 | 22 | 172 | 25 | 154 | 6.36e-47 | 154 |
| MS.gene013809.t1 | AT1G10470 | 50.000 | 162 | 58 | 3 | 17 | 177 | 29 | 168 | 7.49e-47 | 156 |
| MS.gene013809.t1 | AT3G56380 | 51.299 | 154 | 53 | 3 | 19 | 171 | 17 | 149 | 2.61e-45 | 149 |
| MS.gene013809.t1 | AT1G19050 | 50.327 | 153 | 53 | 3 | 21 | 172 | 23 | 153 | 3.32e-45 | 150 |
| MS.gene013809.t1 | AT3G56380 | 50.323 | 155 | 54 | 3 | 19 | 171 | 17 | 150 | 6.54e-45 | 148 |
| MS.gene013809.t1 | AT1G74890 | 48.718 | 156 | 57 | 3 | 21 | 175 | 17 | 150 | 2.51e-44 | 148 |
| MS.gene013809.t1 | AT2G40670 | 46.835 | 158 | 54 | 3 | 20 | 171 | 27 | 160 | 1.46e-41 | 139 |
| MS.gene013809.t1 | AT2G40670 | 45.912 | 159 | 55 | 3 | 20 | 171 | 27 | 161 | 3.57e-41 | 139 |
| MS.gene013809.t1 | AT2G07440 | 53.846 | 52 | 24 | 0 | 122 | 173 | 10 | 61 | 8.14e-15 | 69.7 |
| MS.gene013809.t1 | AT1G10470 | 36.471 | 85 | 53 | 1 | 92 | 175 | 6 | 90 | 1.28e-13 | 67.4 |
Find 44 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCGCCAACCCTTTCATTT+TGG | 0.085264 | 3.3:-73487708 | None:intergenic |
| CTGCACTGCAGGGATCTTCT+TGG | 0.261594 | 3.3:+73487158 | MS.gene013809:intron |
| GATAAGGCTTTGAAATATCT+TGG | 0.316965 | 3.3:+73484654 | MS.gene013809:CDS |
| TCTGATGACATAACCACAAC+TGG | 0.369928 | 3.3:-73487190 | None:intergenic |
| AATTGATATGGAGCTTGCTT+TGG | 0.375819 | 3.3:+73484328 | None:intergenic |
| ATTGATCTCTCTGGAGGCTC+AGG | 0.433469 | 3.3:-73487683 | None:intergenic |
| GTCCGAGTCTGTGGTGGTAG+TGG | 0.436880 | 3.3:-73487579 | None:intergenic |
| ATGACAGATTATTGCATGCC+TGG | 0.445954 | 3.3:+73485928 | MS.gene013809:CDS |
| AATGAAAGGGTTGGCGGTGG+TGG | 0.458526 | 3.3:+73487712 | MS.gene013809:CDS |
| GCTAATAGGTGCTTGGAAGA+AGG | 0.458769 | 3.3:+73487443 | MS.gene013809:intron |
| CTGTGTGGACTCTGGAGATA+AGG | 0.474705 | 3.3:+73484638 | MS.gene013809:CDS |
| ACTTACATGCTAATTCTAGA+AGG | 0.476558 | 3.3:-73487220 | None:intergenic |
| ATTACCTCTTGTAGCTGCAA+TGG | 0.489838 | 3.3:-73484759 | None:intergenic |
| CTAATAGGTGCTTGGAAGAA+GGG | 0.490036 | 3.3:+73487444 | MS.gene013809:intron |
| TAATTTGGCTAATAGGTGCT+TGG | 0.497490 | 3.3:+73487436 | MS.gene013809:intron |
| ACAGTTACCTGTGTGGACTC+TGG | 0.503672 | 3.3:+73484630 | MS.gene013809:intron |
| CTCTGGAGGCTCAGGAGACA+TGG | 0.506463 | 3.3:-73487675 | None:intergenic |
| TTGGAAAGATGTTCCAGTTG+TGG | 0.523397 | 3.3:+73487177 | MS.gene013809:CDS |
| AGATCAATGCCCAAAATGAA+AGG | 0.528945 | 3.3:+73487698 | MS.gene013809:CDS |
| CTTAGAGATTCTTCATGCAA+AGG | 0.532173 | 3.3:+73484455 | MS.gene013809:CDS |
| TAGATGATAGTGTCATTGAT+AGG | 0.538094 | 3.3:+73484414 | MS.gene013809:CDS |
| TTGGGCATTGATCTCTCTGG+AGG | 0.540639 | 3.3:-73487689 | None:intergenic |
| AAATCATAGCCACTCATCCC+AGG | 0.545060 | 3.3:-73485946 | None:intergenic |
| GCCCAAAATGAAAGGGTTGG+CGG | 0.559802 | 3.3:+73487706 | MS.gene013809:CDS |
| TGCAAATCTGATAACTGAAG+AGG | 0.563149 | 3.3:-73487488 | None:intergenic |
| GCAAGAACACTTTCATGTGT+TGG | 0.563382 | 3.3:+73484388 | MS.gene013809:CDS |
| TTCCACTACCACCACAGACT+CGG | 0.564431 | 3.3:+73487577 | MS.gene013809:CDS |
| GATCAATGCCCAAAATGAAA+GGG | 0.575333 | 3.3:+73487699 | MS.gene013809:CDS |
| TGACAGATTATTGCATGCCT+GGG | 0.579945 | 3.3:+73485929 | MS.gene013809:CDS |
| TGCAATGGTTGTTGAAGAGG+AGG | 0.579983 | 3.3:-73484744 | None:intergenic |
| AGCTGCAATGGTTGTTGAAG+AGG | 0.586818 | 3.3:-73484747 | None:intergenic |
| ACATTAATAGTATCAGCAAA+CGG | 0.588740 | 3.3:+73487648 | MS.gene013809:CDS |
| TAATAGGTGCTTGGAAGAAG+GGG | 0.593866 | 3.3:+73487445 | MS.gene013809:intron |
| GTTGTCGTCGTCCGAGTCTG+TGG | 0.598775 | 3.3:-73487588 | None:intergenic |
| AATGCCCAAAATGAAAGGGT+TGG | 0.602173 | 3.3:+73487703 | MS.gene013809:CDS |
| TTGATAGGATGCTTCTAGAG+AGG | 0.609363 | 3.3:+73484429 | MS.gene013809:CDS |
| TAATAGTATCAGCAAACGGA+AGG | 0.609687 | 3.3:+73487652 | MS.gene013809:CDS |
| ACAACCATTGCAGCTACAAG+AGG | 0.610346 | 3.3:+73484755 | MS.gene013809:CDS |
| TATTGCATGCCTGGGATGAG+TGG | 0.615464 | 3.3:+73485937 | MS.gene013809:CDS |
| CAAAATGAAAGGGTTGGCGG+TGG | 0.616336 | 3.3:+73487709 | MS.gene013809:CDS |
| TGATTTACTTAAAAGAGTCA+AGG | 0.620876 | 3.3:+73485963 | MS.gene013809:CDS |
| GTCGTCGTCCGAGTCTGTGG+TGG | 0.650795 | 3.3:-73487585 | None:intergenic |
| TAATATAGAAGACTTTGTTG+AGG | 0.651761 | 3.3:-73484709 | None:intergenic |
| CTTATCTCCAGAGTCCACAC+AGG | 0.676893 | 3.3:-73484637 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATTAACAACTTAATT+TGG | + | chr3.3:73487421-73487440 | MS.gene013809:intron | 10.0% |
| !!! | AACATTAAATTTTTATGTTT+GGG | + | chr3.3:73485853-73485872 | MS.gene013809:intron | 10.0% |
| !!! | AAGTATTTAAGATATAATAA+AGG | - | chr3.3:73487304-73487323 | None:intergenic | 10.0% |
| !!! | ATACATTTTTTTTTTTTTGA+AGG | + | chr3.3:73485468-73485487 | MS.gene013809:intron | 10.0% |
| !! | GAATATATACATGTTATATA+TGG | + | chr3.3:73485227-73485246 | MS.gene013809:intron | 15.0% |
| !! | TCAAAAGAAGAAAAAATTAA+TGG | - | chr3.3:73487129-73487148 | None:intergenic | 15.0% |
| !!! | AAATTAAATCCTAACATTTT+GGG | + | chr3.3:73486999-73487018 | MS.gene013809:intron | 15.0% |
| !!! | AGAAAATTAATTTTACTTCA+AGG | + | chr3.3:73486157-73486176 | MS.gene013809:intron | 15.0% |
| !!! | CTTAGCTTTATTAATTTTAT+GGG | - | chr3.3:73484983-73485002 | None:intergenic | 15.0% |
| !!! | GAACATTAAATTTTTATGTT+TGG | + | chr3.3:73485852-73485871 | MS.gene013809:intron | 15.0% |
| !!! | TAAATTAAATCCTAACATTT+TGG | + | chr3.3:73486998-73487017 | MS.gene013809:intron | 15.0% |
| !!! | TTAGCTTTATTAATTTTATG+GGG | - | chr3.3:73484982-73485001 | None:intergenic | 15.0% |
| !!! | TTTGATATTTGATTTTTAAG+TGG | - | chr3.3:73486788-73486807 | None:intergenic | 15.0% |
| !! | AAATACTTCTTCAAAGAAAA+AGG | + | chr3.3:73487316-73487335 | MS.gene013809:intron | 20.0% |
| !! | AACTATTCAAAATACATACA+AGG | + | chr3.3:73486523-73486542 | MS.gene013809:intron | 20.0% |
| !! | ACAAAAAAAGAATAGATACA+TGG | - | chr3.3:73487102-73487121 | None:intergenic | 20.0% |
| !! | ATACATGTTATATATGGATA+TGG | + | chr3.3:73485233-73485252 | MS.gene013809:intron | 20.0% |
| !! | ATGCAACAATTTAAAGATTT+GGG | - | chr3.3:73486658-73486677 | None:intergenic | 20.0% |
| !! | GAAAAAAGAATACAATTCAA+TGG | + | chr3.3:73485639-73485658 | MS.gene013809:intron | 20.0% |
| !! | GTACTACATATATATGATAA+TGG | + | chr3.3:73485439-73485458 | MS.gene013809:intron | 20.0% |
| !! | TGAATGAAAGTAATTTGATA+AGG | - | chr3.3:73485187-73485206 | None:intergenic | 20.0% |
| !!! | ACAATTCAAAAAGAAGTATA+AGG | + | chr3.3:73486438-73486457 | MS.gene013809:intron | 20.0% |
| !!! | AGATAGATTTAGTTCATATA+TGG | - | chr3.3:73486963-73486982 | None:intergenic | 20.0% |
| !!! | ATATATGTTCTCTTGTTTAT+AGG | + | chr3.3:73485587-73485606 | MS.gene013809:intron | 20.0% |
| !!! | CAATTCAAAAAGAAGTATAA+GGG | + | chr3.3:73486439-73486458 | MS.gene013809:intron | 20.0% |
| !!! | GCTTAGCTTTATTAATTTTA+TGG | - | chr3.3:73484984-73485003 | None:intergenic | 20.0% |
| !!! | TATACTTCTTTTTGAATTGT+TGG | - | chr3.3:73486438-73486457 | None:intergenic | 20.0% |
| !!! | TCTCTTTTTTAAACTTGAAT+AGG | + | chr3.3:73486029-73486048 | MS.gene013809:intron | 20.0% |
| ! | AACAATTTAAAGATTTGGGA+GGG | - | chr3.3:73486654-73486673 | None:intergenic | 25.0% |
| ! | ACATTAATAGTATCAGCAAA+CGG | + | chr3.3:73487648-73487667 | MS.gene013809:CDS | 25.0% |
| ! | AGAAAGAGTAAGAAAGAAAA+AGG | + | chr3.3:73487023-73487042 | MS.gene013809:intron | 25.0% |
| ! | AGCATACATTAAATCAGATT+AGG | + | chr3.3:73485617-73485636 | MS.gene013809:intron | 25.0% |
| ! | ATGAAAGTAATTTGATAAGG+AGG | - | chr3.3:73485184-73485203 | None:intergenic | 25.0% |
| ! | CATATATGACTTATGATACA+TGG | + | chr3.3:73485527-73485546 | MS.gene013809:intron | 25.0% |
| ! | CATGCAACAATTTAAAGATT+TGG | - | chr3.3:73486659-73486678 | None:intergenic | 25.0% |
| ! | CATGGATCAAAACAATAATT+AGG | - | chr3.3:73485721-73485740 | None:intergenic | 25.0% |
| ! | TAACAATTTCAACAGTCTAA+AGG | - | chr3.3:73485125-73485144 | None:intergenic | 25.0% |
| ! | TAATATAGAAGACTTTGTTG+AGG | - | chr3.3:73484712-73484731 | None:intergenic | 25.0% |
| ! | TAATTAATTGTAACTACCCA+AGG | - | chr3.3:73486872-73486891 | None:intergenic | 25.0% |
| ! | TCAAGTTTAAAAAAGAGAGA+GGG | - | chr3.3:73486027-73486046 | None:intergenic | 25.0% |
| ! | TCCTAATAATTGAGATTGTA+CGG | - | chr3.3:73484504-73484523 | None:intergenic | 25.0% |
| ! | TCTCCTATGTCTAATAAAAT+TGG | - | chr3.3:73486395-73486414 | None:intergenic | 25.0% |
| ! | TGATTTACTTAAAAGAGTCA+AGG | + | chr3.3:73485963-73485982 | MS.gene013809:CDS | 25.0% |
| ! | TGGAATAAAAATCACTGAAA+TGG | - | chr3.3:73486698-73486717 | None:intergenic | 25.0% |
| !! | AAATCTCTCTTTTGTGAAAA+AGG | + | chr3.3:73485796-73485815 | MS.gene013809:intron | 25.0% |
| !! | AACAACTTAATTTGGCTAAT+AGG | + | chr3.3:73487429-73487448 | MS.gene013809:intron | 25.0% |
| !! | AACTATCTTGAAAACTTTTG+AGG | - | chr3.3:73484809-73484828 | None:intergenic | 25.0% |
| !! | AATTAATTTTACTTCAAGGC+TGG | + | chr3.3:73486161-73486180 | MS.gene013809:intron | 25.0% |
| !! | AGAATTTTGTGTACTGAATT+TGG | + | chr3.3:73484568-73484587 | MS.gene013809:intron | 25.0% |
| !! | CATCCAATTTTATTAGACAT+AGG | + | chr3.3:73486389-73486408 | MS.gene013809:intron | 25.0% |
| !! | CCTCTAAAAAAAATACAGTT+AGG | + | chr3.3:73485299-73485318 | MS.gene013809:intron | 25.0% |
| !! | GGAATTATATATGTTGATGA+AGG | - | chr3.3:73485281-73485300 | None:intergenic | 25.0% |
| !! | TGTGACTTTAAAGATAGTTA+CGG | + | chr3.3:73486282-73486301 | MS.gene013809:intron | 25.0% |
| !! | TTCAAGTTTAAAAAAGAGAG+AGG | - | chr3.3:73486028-73486047 | None:intergenic | 25.0% |
| !!! | AAGAATTTTCAAGGGATTTT+AGG | - | chr3.3:73487532-73487551 | None:intergenic | 25.0% |
| !!! | AGCAAATATACCTTTTTTTC+TGG | - | chr3.3:73484872-73484891 | None:intergenic | 25.0% |
| !!! | ATGTTGATGAAGGTAATTTT+TGG | - | chr3.3:73485271-73485290 | None:intergenic | 25.0% |
| !!! | ATTTTTAAGTGGATCATAGT+TGG | - | chr3.3:73486777-73486796 | None:intergenic | 25.0% |
| !!! | CCTAACTGTATTTTTTTTAG+AGG | - | chr3.3:73485302-73485321 | None:intergenic | 25.0% |
| !!! | TTAGTTTTGTCCAGAAAAAA+AGG | + | chr3.3:73484859-73484878 | MS.gene013809:intron | 25.0% |
| !!! | TTGGTTAAGTAATTGTTTTG+TGG | + | chr3.3:73484587-73484606 | MS.gene013809:intron | 25.0% |
| AAAAAAGAGAGAGGGAATAT+AGG | - | chr3.3:73486019-73486038 | None:intergenic | 30.0% | |
| AAAAAGAGAGAGGGAATATA+GGG | - | chr3.3:73486018-73486037 | None:intergenic | 30.0% | |
| AAGAATTGAGACATGAAAGA+GGG | + | chr3.3:73486494-73486513 | MS.gene013809:intron | 30.0% | |
| ACTTACATGCTAATTCTAGA+AGG | - | chr3.3:73487223-73487242 | None:intergenic | 30.0% | |
| AGATTGTACGGAAAAAATGT+TGG | - | chr3.3:73484492-73484511 | None:intergenic | 30.0% | |
| ATGATGAAACATGAGGTTAT+GGG | - | chr3.3:73486846-73486865 | None:intergenic | 30.0% | |
| CAACAATTTAAAGATTTGGG+AGG | - | chr3.3:73486655-73486674 | None:intergenic | 30.0% | |
| TAAACCAAAGCGACTTTATA+TGG | + | chr3.3:73485347-73485366 | MS.gene013809:intron | 30.0% | |
| TATGATGAAACATGAGGTTA+TGG | - | chr3.3:73486847-73486866 | None:intergenic | 30.0% | |
| TCCGTACAATCTCAATTATT+AGG | + | chr3.3:73484500-73484519 | MS.gene013809:intron | 30.0% | |
| TCCTAACTAAGAAAGGAAAA+AGG | - | chr3.3:73485061-73485080 | None:intergenic | 30.0% | |
| TCTTAAGTCCTAACTAAGAA+AGG | - | chr3.3:73485068-73485087 | None:intergenic | 30.0% | |
| TTAGAAGAAAAAAACGCAGA+AGG | - | chr3.3:73485097-73485116 | None:intergenic | 30.0% | |
| TTAGTAGTATTATGCTGAGT+GGG | + | chr3.3:73485142-73485161 | MS.gene013809:intron | 30.0% | |
| TTTGTGAAAAAGGATACGTA+CGG | + | chr3.3:73485806-73485825 | MS.gene013809:intron | 30.0% | |
| ! | ATTGATGCAGCATTAGATTT+TGG | - | chr3.3:73487370-73487389 | None:intergenic | 30.0% |
| ! | CTCATCAGAAGAATTTTCAA+GGG | - | chr3.3:73487540-73487559 | None:intergenic | 30.0% |
| ! | TAGATGATAGTGTCATTGAT+AGG | + | chr3.3:73484414-73484433 | MS.gene013809:CDS | 30.0% |
| ! | TAGATGTAATTTTGTCGACA+AGG | - | chr3.3:73486811-73486830 | None:intergenic | 30.0% |
| ! | TCCTTTTTCCTTTCTTAGTT+AGG | + | chr3.3:73485057-73485076 | MS.gene013809:intron | 30.0% |
| ! | TGATTTTTATTCCACGACAA+AGG | + | chr3.3:73486704-73486723 | MS.gene013809:intron | 30.0% |
| ! | TTGATTTAGAGTCTTTGCTT+TGG | - | chr3.3:73486476-73486495 | None:intergenic | 30.0% |
| ! | TTTTTCCTCAAAGAACTTGA+AGG | - | chr3.3:73486616-73486635 | None:intergenic | 30.0% |
| !! | AGTTTAATTTTCGCATCTTG+TGG | + | chr3.3:73486222-73486241 | MS.gene013809:intron | 30.0% |
| !! | GATAAGGCTTTGAAATATCT+TGG | + | chr3.3:73484654-73484673 | MS.gene013809:CDS | 30.0% |
| !! | TATCTTGAAAACTTTTGAGG+AGG | - | chr3.3:73484806-73484825 | None:intergenic | 30.0% |
| !! | TTATTTTTCATCCTTTGTCG+TGG | - | chr3.3:73486718-73486737 | None:intergenic | 30.0% |
| !!! | TTTTAAAACAGTTACCTGTG+TGG | + | chr3.3:73484623-73484642 | MS.gene013809:intron | 30.0% |
| AACTCCATATAAAGTCGCTT+TGG | - | chr3.3:73485354-73485373 | None:intergenic | 35.0% | |
| AAGGTGTATGATGAAACATG+AGG | - | chr3.3:73486853-73486872 | None:intergenic | 35.0% | |
| AGATCAATGCCCAAAATGAA+AGG | + | chr3.3:73487698-73487717 | MS.gene013809:CDS | 35.0% | |
| AGTCAACACGATAAAATGGA+TGG | - | chr3.3:73485033-73485052 | None:intergenic | 35.0% | |
| CAAGAATATAGTGTCTGCTA+TGG | + | chr3.3:73485750-73485769 | MS.gene013809:intron | 35.0% | |
| CAAGAATTGAGACATGAAAG+AGG | + | chr3.3:73486493-73486512 | MS.gene013809:intron | 35.0% | |
| CATGTTTCATCATACACCTT+GGG | + | chr3.3:73486853-73486872 | MS.gene013809:intron | 35.0% | |
| CTCTTTCTACCCAAAATGTT+AGG | - | chr3.3:73487011-73487030 | None:intergenic | 35.0% | |
| CTTAGAGATTCTTCATGCAA+AGG | + | chr3.3:73484455-73484474 | MS.gene013809:CDS | 35.0% | |
| GATCAATGCCCAAAATGAAA+GGG | + | chr3.3:73487699-73487718 | MS.gene013809:CDS | 35.0% | |
| GCTTAGTCAACACGATAAAA+TGG | - | chr3.3:73485037-73485056 | None:intergenic | 35.0% | |
| GTTAGTAGTATTATGCTGAG+TGG | + | chr3.3:73485141-73485160 | MS.gene013809:intron | 35.0% | |
| TAATAGTATCAGCAAACGGA+AGG | + | chr3.3:73487652-73487671 | MS.gene013809:CDS | 35.0% | |
| TAATTTGGCTAATAGGTGCT+TGG | + | chr3.3:73487436-73487455 | MS.gene013809:intron | 35.0% | |
| TAGTAGTATTATGCTGAGTG+GGG | + | chr3.3:73485143-73485162 | MS.gene013809:intron | 35.0% | |
| TCATCAAAGTAACCTCTTAG+AGG | - | chr3.3:73486575-73486594 | None:intergenic | 35.0% | |
| TCATGTTTCATCATACACCT+TGG | + | chr3.3:73486852-73486871 | MS.gene013809:intron | 35.0% | |
| TGCAAATCTGATAACTGAAG+AGG | - | chr3.3:73487491-73487510 | None:intergenic | 35.0% | |
| TTCTTCATGCAAAGGTAGTT+AGG | + | chr3.3:73484463-73484482 | MS.gene013809:intron | 35.0% | |
| ! | ATCATGTGCACTATTTTGCA+GGG | + | chr3.3:73485886-73485905 | MS.gene013809:intron | 35.0% |
| ! | ATTTAGAGTCTTTGCTTTGG+TGG | - | chr3.3:73486473-73486492 | None:intergenic | 35.0% |
| ! | GCTCATCAGAAGAATTTTCA+AGG | - | chr3.3:73487541-73487560 | None:intergenic | 35.0% |
| ! | TTTAGAGTCTTTGCTTTGGT+GGG | - | chr3.3:73486472-73486491 | None:intergenic | 35.0% |
| !! | TCAAGGGATTTTAGGAAGTA+TGG | - | chr3.3:73487524-73487543 | None:intergenic | 35.0% |
| !! | TGTTCTTGCTTCAAGTTTTG+TGG | - | chr3.3:73484377-73484396 | None:intergenic | 35.0% |
| AAAGAAAACTGCTTACGAGC+AGG | + | chr3.3:73486350-73486369 | MS.gene013809:intron | 40.0% | |
| AATGCCCAAAATGAAAGGGT+TGG | + | chr3.3:73487703-73487722 | MS.gene013809:CDS | 40.0% | |
| AGGGAATATAGGGAAGATGT+CGG | - | chr3.3:73486008-73486027 | None:intergenic | 40.0% | |
| AGTTCACTAGCACTTTGCAA+AGG | + | chr3.3:73486130-73486149 | MS.gene013809:intron | 40.0% | |
| ATATTCTTGCGAGGAGATCA+TGG | - | chr3.3:73485739-73485758 | None:intergenic | 40.0% | |
| ATGACAGATTATTGCATGCC+TGG | + | chr3.3:73485928-73485947 | MS.gene013809:CDS | 40.0% | |
| ATTACCTCTTGTAGCTGCAA+TGG | - | chr3.3:73484762-73484781 | None:intergenic | 40.0% | |
| CTAATAGGTGCTTGGAAGAA+GGG | + | chr3.3:73487444-73487463 | MS.gene013809:intron | 40.0% | |
| GCAAGAACACTTTCATGTGT+TGG | + | chr3.3:73484388-73484407 | MS.gene013809:CDS | 40.0% | |
| GGAGGATCTGAAAGAGAAAT+TGG | - | chr3.3:73485378-73485397 | None:intergenic | 40.0% | |
| TAATAGGTGCTTGGAAGAAG+GGG | + | chr3.3:73487445-73487464 | MS.gene013809:intron | 40.0% | |
| TCAAAGTAACCTCTTAGAGG+TGG | - | chr3.3:73486572-73486591 | None:intergenic | 40.0% | |
| TCTGATGACATAACCACAAC+TGG | - | chr3.3:73487193-73487212 | None:intergenic | 40.0% | |
| TGACAGATTATTGCATGCCT+GGG | + | chr3.3:73485929-73485948 | MS.gene013809:CDS | 40.0% | |
| TGAGTGGGGATATTGAACTT+TGG | + | chr3.3:73485157-73485176 | MS.gene013809:intron | 40.0% | |
| TTCAGATCCTCCATTCATCT+AGG | + | chr3.3:73485386-73485405 | MS.gene013809:intron | 40.0% | |
| TTCCTCAAAGAACTTGAAGG+TGG | - | chr3.3:73486613-73486632 | None:intergenic | 40.0% | |
| TTGGAAAGATGTTCCAGTTG+TGG | + | chr3.3:73487177-73487196 | MS.gene013809:CDS | 40.0% | |
| ! | CATCATGTGCACTATTTTGC+AGG | + | chr3.3:73485885-73485904 | MS.gene013809:intron | 40.0% |
| ! | TTCCACCTTCAAGTTCTTTG+AGG | + | chr3.3:73486608-73486627 | MS.gene013809:intron | 40.0% |
| ! | TTGATAGGATGCTTCTAGAG+AGG | + | chr3.3:73484429-73484448 | MS.gene013809:CDS | 40.0% |
| !! | CTTGAAAACTTTTGAGGAGG+AGG | - | chr3.3:73484803-73484822 | None:intergenic | 40.0% |
| !!! | ATTTTGGGCATTGATCTCTC+TGG | - | chr3.3:73487695-73487714 | None:intergenic | 40.0% |
| AAATCATAGCCACTCATCCC+AGG | - | chr3.3:73485949-73485968 | None:intergenic | 45.0% | |
| ACAACCATTGCAGCTACAAG+AGG | + | chr3.3:73484755-73484774 | MS.gene013809:CDS | 45.0% | |
| AGCTAGAAACCACCTCTAAG+AGG | + | chr3.3:73486560-73486579 | MS.gene013809:intron | 45.0% | |
| AGCTGCAATGGTTGTTGAAG+AGG | - | chr3.3:73484750-73484769 | None:intergenic | 45.0% | |
| GAAGGTGGAAGAGATTGTAG+AGG | - | chr3.3:73486598-73486617 | None:intergenic | 45.0% | |
| GCAGACACTATATTCTTGCG+AGG | - | chr3.3:73485748-73485767 | None:intergenic | 45.0% | |
| GCTAATAGGTGCTTGGAAGA+AGG | + | chr3.3:73487443-73487462 | MS.gene013809:intron | 45.0% | |
| GGAATATAGGGAAGATGTCG+GGG | - | chr3.3:73486006-73486025 | None:intergenic | 45.0% | |
| GGGAATATAGGGAAGATGTC+GGG | - | chr3.3:73486007-73486026 | None:intergenic | 45.0% | |
| GTACGTACAGTGCAGTGAAA+AGG | - | chr3.3:73485697-73485716 | None:intergenic | 45.0% | |
| TGCAATGGTTGTTGAAGAGG+AGG | - | chr3.3:73484747-73484766 | None:intergenic | 45.0% | |
| ! | ACCGCCAACCCTTTCATTTT+GGG | - | chr3.3:73487710-73487729 | None:intergenic | 45.0% |
| !!! | TTTATTTTATATATTTTGAA+TGG | + | chr3.3:73486306-73486325 | MS.gene013809:intron | 5.0% |
| ACACTGCTTACTGCACTGCA+GGG | + | chr3.3:73487148-73487167 | MS.gene013809:intron | 50.0% | |
| ACAGTTACCTGTGTGGACTC+TGG | + | chr3.3:73484630-73484649 | MS.gene013809:intron | 50.0% | |
| CTTATCTCCAGAGTCCACAC+AGG | - | chr3.3:73484640-73484659 | None:intergenic | 50.0% | |
| GCCCAAAATGAAAGGGTTGG+CGG | + | chr3.3:73487706-73487725 | MS.gene013809:CDS | 50.0% | |
| TATTGCATGCCTGGGATGAG+TGG | + | chr3.3:73485937-73485956 | MS.gene013809:CDS | 50.0% | |
| TCCTCCATTCATCTAGGTCG+CGG | + | chr3.3:73485392-73485411 | MS.gene013809:intron | 50.0% | |
| TTCCACTACCACCACAGACT+CGG | + | chr3.3:73487577-73487596 | MS.gene013809:CDS | 50.0% | |
| ! | ATTGATCTCTCTGGAGGCTC+AGG | - | chr3.3:73487686-73487705 | None:intergenic | 50.0% |
| ! | CAAAATGAAAGGGTTGGCGG+TGG | + | chr3.3:73487709-73487728 | MS.gene013809:CDS | 50.0% |
| ! | CACCGCCAACCCTTTCATTT+TGG | - | chr3.3:73487711-73487730 | None:intergenic | 50.0% |
| ! | CTGTGTGGACTCTGGAGATA+AGG | + | chr3.3:73484638-73484657 | MS.gene013809:CDS | 50.0% |
| !! | TTGGGCATTGATCTCTCTGG+AGG | - | chr3.3:73487692-73487711 | None:intergenic | 50.0% |
| CTGCACTGCAGGGATCTTCT+TGG | + | chr3.3:73487158-73487177 | MS.gene013809:intron | 55.0% | |
| GACACTGCTTACTGCACTGC+AGG | + | chr3.3:73487147-73487166 | MS.gene013809:intron | 55.0% | |
| GCATCCGCGACCTAGATGAA+TGG | - | chr3.3:73485399-73485418 | None:intergenic | 55.0% | |
| TCCGCGACCTAGATGAATGG+AGG | - | chr3.3:73485396-73485415 | None:intergenic | 55.0% | |
| ! | AATGAAAGGGTTGGCGGTGG+TGG | + | chr3.3:73487712-73487731 | MS.gene013809:CDS | 55.0% |
| GTCCGAGTCTGTGGTGGTAG+TGG | - | chr3.3:73487582-73487601 | None:intergenic | 60.0% | |
| GTTGTCGTCGTCCGAGTCTG+TGG | - | chr3.3:73487591-73487610 | None:intergenic | 60.0% | |
| ! | CTCTGGAGGCTCAGGAGACA+TGG | - | chr3.3:73487678-73487697 | None:intergenic | 60.0% |
| GTCGTCGTCCGAGTCTGTGG+TGG | - | chr3.3:73487588-73487607 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 73484335 | 73487739 | 73484335 | ID=MS.gene013809 |
| chr3.3 | mRNA | 73484335 | 73487739 | 73484335 | ID=MS.gene013809.t1;Parent=MS.gene013809 |
| chr3.3 | exon | 73484335 | 73484476 | 73484335 | ID=MS.gene013809.t1.exon1;Parent=MS.gene013809.t1 |
| chr3.3 | CDS | 73484335 | 73484476 | 73484335 | ID=cds.MS.gene013809.t1;Parent=MS.gene013809.t1 |
| chr3.3 | exon | 73484634 | 73484776 | 73484634 | ID=MS.gene013809.t1.exon2;Parent=MS.gene013809.t1 |
| chr3.3 | CDS | 73484634 | 73484776 | 73484634 | ID=cds.MS.gene013809.t1;Parent=MS.gene013809.t1 |
| chr3.3 | exon | 73485907 | 73485984 | 73485907 | ID=MS.gene013809.t1.exon3;Parent=MS.gene013809.t1 |
| chr3.3 | CDS | 73485907 | 73485984 | 73485907 | ID=cds.MS.gene013809.t1;Parent=MS.gene013809.t1 |
| chr3.3 | exon | 73487169 | 73487236 | 73487169 | ID=MS.gene013809.t1.exon4;Parent=MS.gene013809.t1 |
| chr3.3 | CDS | 73487169 | 73487236 | 73487169 | ID=cds.MS.gene013809.t1;Parent=MS.gene013809.t1 |
| chr3.3 | exon | 73487451 | 73487739 | 73487451 | ID=MS.gene013809.t1.exon5;Parent=MS.gene013809.t1 |
| chr3.3 | CDS | 73487451 | 73487739 | 73487451 | ID=cds.MS.gene013809.t1;Parent=MS.gene013809.t1 |
| Gene Sequence |
| Protein sequence |
