Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013852.t1 | XP_003624725.3 | 86.4 | 426 | 56 | 1 | 1 | 426 | 1 | 424 | 6.40E-210 | 740 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013852.t1 | Q93ZL5 | 35.9 | 340 | 166 | 10 | 84 | 406 | 117 | 421 | 1.9e-37 | 158.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013852.t1 | A0A396H9C4 | 86.4 | 426 | 56 | 1 | 1 | 426 | 1 | 424 | 4.6e-210 | 740.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene013852.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013852.t1 | MTR_7g086780 | 96.462 | 424 | 13 | 1 | 3 | 426 | 1 | 422 | 0.0 | 849 |
MS.gene013852.t1 | MTR_6g027460 | 50.267 | 374 | 139 | 9 | 8 | 350 | 10 | 367 | 8.41e-106 | 318 |
MS.gene013852.t1 | MTR_6g027450 | 47.230 | 343 | 142 | 9 | 8 | 335 | 10 | 328 | 6.18e-93 | 283 |
MS.gene013852.t1 | MTR_6g012450 | 34.747 | 495 | 222 | 17 | 8 | 425 | 5 | 475 | 5.58e-64 | 214 |
MS.gene013852.t1 | MTR_7g010950 | 35.520 | 442 | 208 | 15 | 38 | 425 | 67 | 485 | 5.16e-55 | 190 |
MS.gene013852.t1 | MTR_4g082060 | 32.041 | 490 | 229 | 16 | 8 | 424 | 5 | 463 | 1.69e-54 | 188 |
MS.gene013852.t1 | MTR_8g044220 | 32.558 | 473 | 227 | 14 | 5 | 426 | 8 | 439 | 9.01e-54 | 185 |
MS.gene013852.t1 | MTR_3g435480 | 34.078 | 358 | 188 | 8 | 83 | 421 | 116 | 444 | 2.17e-49 | 174 |
MS.gene013852.t1 | MTR_2g016030 | 56.000 | 100 | 37 | 1 | 97 | 196 | 41 | 133 | 5.14e-32 | 119 |
MS.gene013852.t1 | MTR_5g041420 | 65.116 | 86 | 24 | 1 | 86 | 165 | 121 | 206 | 1.52e-31 | 123 |
MS.gene013852.t1 | MTR_5g041380 | 31.594 | 345 | 127 | 15 | 97 | 426 | 121 | 371 | 2.55e-31 | 123 |
MS.gene013852.t1 | MTR_5g041400 | 30.117 | 342 | 136 | 11 | 97 | 426 | 113 | 363 | 1.04e-30 | 121 |
MS.gene013852.t1 | MTR_5g041530 | 69.014 | 71 | 22 | 0 | 86 | 156 | 123 | 193 | 3.92e-28 | 114 |
MS.gene013852.t1 | MTR_8g068210 | 51.807 | 83 | 39 | 1 | 77 | 158 | 5 | 87 | 9.74e-25 | 104 |
MS.gene013852.t1 | MTR_8g027295 | 61.905 | 63 | 24 | 0 | 98 | 160 | 19 | 81 | 1.30e-24 | 102 |
MS.gene013852.t1 | MTR_3g091820 | 55.556 | 81 | 30 | 1 | 77 | 157 | 23 | 97 | 1.36e-24 | 103 |
MS.gene013852.t1 | MTR_8g479350 | 57.534 | 73 | 31 | 0 | 103 | 175 | 68 | 140 | 2.39e-24 | 103 |
MS.gene013852.t1 | MTR_4g022370 | 65.517 | 58 | 20 | 0 | 99 | 156 | 78 | 135 | 7.30e-24 | 102 |
MS.gene013852.t1 | MTR_8g079060 | 38.462 | 130 | 55 | 3 | 58 | 187 | 3 | 107 | 8.02e-24 | 99.4 |
MS.gene013852.t1 | MTR_2g059540 | 73.469 | 49 | 13 | 0 | 103 | 151 | 31 | 79 | 8.39e-24 | 99.0 |
MS.gene013852.t1 | MTR_2g093220 | 66.102 | 59 | 20 | 0 | 98 | 156 | 35 | 93 | 1.60e-23 | 100 |
MS.gene013852.t1 | MTR_2g096740 | 56.000 | 75 | 33 | 0 | 82 | 156 | 41 | 115 | 2.09e-23 | 99.8 |
MS.gene013852.t1 | MTR_2g096740 | 56.000 | 75 | 33 | 0 | 82 | 156 | 56 | 130 | 2.11e-23 | 100 |
MS.gene013852.t1 | MTR_4g063780 | 37.903 | 124 | 74 | 2 | 90 | 211 | 60 | 182 | 3.75e-23 | 99.8 |
MS.gene013852.t1 | MTR_4g088580 | 70.909 | 55 | 16 | 0 | 104 | 158 | 56 | 110 | 4.65e-23 | 100 |
MS.gene013852.t1 | MTR_8g015840 | 69.231 | 52 | 16 | 0 | 103 | 154 | 20 | 71 | 5.97e-23 | 96.7 |
MS.gene013852.t1 | MTR_4g109980 | 67.925 | 53 | 17 | 0 | 101 | 153 | 38 | 90 | 8.87e-23 | 98.6 |
MS.gene013852.t1 | MTR_4g461080 | 62.121 | 66 | 24 | 1 | 91 | 155 | 16 | 81 | 1.90e-22 | 96.7 |
MS.gene013852.t1 | MTR_1g077600 | 51.899 | 79 | 33 | 1 | 82 | 155 | 17 | 95 | 2.63e-22 | 96.7 |
MS.gene013852.t1 | MTR_1g077600 | 51.899 | 79 | 33 | 1 | 82 | 155 | 17 | 95 | 2.79e-22 | 96.3 |
MS.gene013852.t1 | MTR_2g014060 | 59.375 | 64 | 26 | 0 | 91 | 154 | 13 | 76 | 3.48e-22 | 97.1 |
MS.gene013852.t1 | MTR_7g059400 | 38.760 | 129 | 66 | 2 | 91 | 217 | 62 | 179 | 3.60e-22 | 97.4 |
MS.gene013852.t1 | MTR_7g024670 | 69.091 | 55 | 16 | 1 | 104 | 157 | 78 | 132 | 2.49e-21 | 95.1 |
MS.gene013852.t1 | MTR_5g031440 | 65.455 | 55 | 19 | 0 | 99 | 153 | 39 | 93 | 2.63e-21 | 94.7 |
MS.gene013852.t1 | MTR_2g013370 | 67.857 | 56 | 17 | 1 | 103 | 158 | 46 | 100 | 3.09e-21 | 93.2 |
MS.gene013852.t1 | MTR_4g089095 | 66.071 | 56 | 18 | 1 | 103 | 158 | 50 | 104 | 4.01e-21 | 93.6 |
MS.gene013852.t1 | MTR_4g089095 | 66.071 | 56 | 18 | 1 | 103 | 158 | 16 | 70 | 4.83e-21 | 92.4 |
MS.gene013852.t1 | MTR_3g090430 | 67.308 | 52 | 17 | 0 | 105 | 156 | 53 | 104 | 5.19e-21 | 93.6 |
MS.gene013852.t1 | MTR_2g014170 | 69.388 | 49 | 15 | 0 | 103 | 151 | 45 | 93 | 7.68e-21 | 92.8 |
MS.gene013852.t1 | MTR_1g056810 | 67.308 | 52 | 17 | 0 | 105 | 156 | 14 | 65 | 9.37e-21 | 92.0 |
MS.gene013852.t1 | MTR_3g077750 | 58.065 | 62 | 25 | 1 | 93 | 153 | 50 | 111 | 3.01e-20 | 91.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013852.t1 | AT5G39660 | 37.366 | 372 | 175 | 15 | 40 | 393 | 77 | 408 | 4.36e-53 | 184 |
MS.gene013852.t1 | AT5G39660 | 37.366 | 372 | 175 | 15 | 40 | 393 | 77 | 408 | 4.36e-53 | 184 |
MS.gene013852.t1 | AT5G39660 | 37.366 | 372 | 175 | 15 | 40 | 393 | 77 | 408 | 4.36e-53 | 184 |
MS.gene013852.t1 | AT3G47500 | 31.546 | 485 | 234 | 15 | 3 | 426 | 1 | 448 | 5.47e-50 | 176 |
MS.gene013852.t1 | AT5G62430 | 42.424 | 198 | 65 | 5 | 82 | 277 | 33 | 183 | 1.32e-37 | 139 |
MS.gene013852.t1 | AT1G26790 | 45.143 | 175 | 88 | 5 | 1 | 169 | 5 | 177 | 1.93e-34 | 132 |
MS.gene013852.t1 | AT1G29160 | 81.667 | 60 | 11 | 0 | 97 | 156 | 56 | 115 | 8.23e-33 | 122 |
MS.gene013852.t1 | AT2G34140 | 64.198 | 81 | 29 | 0 | 97 | 177 | 52 | 132 | 1.42e-32 | 121 |
MS.gene013852.t1 | AT1G69570 | 65.823 | 79 | 27 | 0 | 91 | 169 | 120 | 198 | 3.70e-32 | 126 |
MS.gene013852.t1 | AT3G55370 | 57.143 | 70 | 30 | 0 | 99 | 168 | 72 | 141 | 9.24e-25 | 104 |
MS.gene013852.t1 | AT3G55370 | 57.143 | 70 | 30 | 0 | 99 | 168 | 72 | 141 | 1.15e-24 | 104 |
MS.gene013852.t1 | AT3G55370 | 57.143 | 70 | 30 | 0 | 99 | 168 | 117 | 186 | 1.86e-24 | 104 |
MS.gene013852.t1 | AT5G60850 | 54.762 | 84 | 32 | 2 | 103 | 186 | 51 | 128 | 2.84e-24 | 102 |
MS.gene013852.t1 | AT5G60200 | 56.338 | 71 | 31 | 0 | 99 | 169 | 51 | 121 | 4.42e-24 | 100 |
MS.gene013852.t1 | AT1G51700 | 69.231 | 52 | 16 | 0 | 103 | 154 | 33 | 84 | 4.74e-24 | 99.4 |
MS.gene013852.t1 | AT4G24060 | 44.444 | 117 | 60 | 2 | 100 | 214 | 50 | 163 | 1.40e-23 | 101 |
MS.gene013852.t1 | AT3G61850 | 64.407 | 59 | 21 | 0 | 98 | 156 | 57 | 115 | 1.50e-23 | 100 |
MS.gene013852.t1 | AT3G61850 | 64.407 | 59 | 21 | 0 | 98 | 156 | 57 | 115 | 1.50e-23 | 100 |
MS.gene013852.t1 | AT3G61850 | 64.407 | 59 | 21 | 0 | 98 | 156 | 69 | 127 | 2.09e-23 | 100 |
MS.gene013852.t1 | AT3G61850 | 64.407 | 59 | 21 | 0 | 98 | 156 | 57 | 115 | 2.44e-23 | 100 |
MS.gene013852.t1 | AT2G28810 | 66.071 | 56 | 19 | 0 | 99 | 154 | 73 | 128 | 2.74e-23 | 100 |
MS.gene013852.t1 | AT3G61850 | 64.407 | 59 | 21 | 0 | 98 | 156 | 69 | 127 | 3.28e-23 | 100 |
MS.gene013852.t1 | AT3G21270 | 69.811 | 53 | 16 | 0 | 103 | 155 | 29 | 81 | 3.50e-23 | 97.1 |
MS.gene013852.t1 | AT2G28810 | 66.071 | 56 | 19 | 0 | 99 | 154 | 90 | 145 | 4.80e-23 | 99.8 |
MS.gene013852.t1 | AT3G45610 | 52.857 | 70 | 33 | 0 | 99 | 168 | 36 | 105 | 5.73e-23 | 97.4 |
MS.gene013852.t1 | AT2G37590 | 63.793 | 58 | 21 | 0 | 99 | 156 | 85 | 142 | 6.02e-23 | 99.4 |
MS.gene013852.t1 | AT1G07640 | 69.091 | 55 | 16 | 1 | 103 | 156 | 21 | 75 | 1.19e-22 | 97.4 |
MS.gene013852.t1 | AT1G07640 | 69.091 | 55 | 16 | 1 | 103 | 156 | 77 | 131 | 1.66e-22 | 98.2 |
MS.gene013852.t1 | AT4G00940 | 56.944 | 72 | 27 | 1 | 91 | 158 | 52 | 123 | 2.10e-22 | 97.1 |
MS.gene013852.t1 | AT4G00940 | 56.944 | 72 | 27 | 1 | 91 | 158 | 52 | 123 | 2.10e-22 | 97.1 |
MS.gene013852.t1 | AT4G00940 | 56.944 | 72 | 27 | 1 | 91 | 158 | 52 | 123 | 2.10e-22 | 97.1 |
MS.gene013852.t1 | AT1G28310 | 68.519 | 54 | 17 | 0 | 103 | 156 | 27 | 80 | 2.10e-22 | 97.4 |
MS.gene013852.t1 | AT1G07640 | 69.091 | 55 | 16 | 1 | 103 | 156 | 85 | 139 | 2.23e-22 | 97.8 |
MS.gene013852.t1 | AT5G65590 | 70.370 | 54 | 16 | 0 | 103 | 156 | 41 | 94 | 2.43e-22 | 97.4 |
MS.gene013852.t1 | AT1G28310 | 68.519 | 54 | 17 | 0 | 103 | 156 | 51 | 104 | 3.11e-22 | 97.4 |
MS.gene013852.t1 | AT5G02460 | 44.898 | 98 | 53 | 1 | 99 | 195 | 91 | 188 | 4.40e-22 | 97.8 |
MS.gene013852.t1 | AT1G64620 | 65.385 | 52 | 18 | 0 | 100 | 151 | 46 | 97 | 5.83e-22 | 97.1 |
MS.gene013852.t1 | AT3G50410 | 70.588 | 51 | 15 | 0 | 105 | 155 | 32 | 82 | 5.85e-22 | 94.7 |
MS.gene013852.t1 | AT4G38000 | 66.071 | 56 | 18 | 1 | 102 | 156 | 40 | 95 | 8.10e-22 | 94.4 |
MS.gene013852.t1 | AT5G66940 | 50.000 | 80 | 33 | 1 | 90 | 169 | 26 | 98 | 8.20e-22 | 94.0 |
MS.gene013852.t1 | AT2G28510 | 66.071 | 56 | 19 | 0 | 105 | 160 | 50 | 105 | 1.63e-21 | 94.4 |
MS.gene013852.t1 | AT4G21050 | 40.800 | 125 | 59 | 3 | 76 | 198 | 4 | 115 | 2.88e-21 | 92.0 |
MS.gene013852.t1 | AT2G46590 | 62.264 | 53 | 20 | 0 | 98 | 150 | 63 | 115 | 1.17e-20 | 93.2 |
MS.gene013852.t1 | AT3G52440 | 65.385 | 52 | 18 | 0 | 105 | 156 | 27 | 78 | 1.23e-20 | 90.9 |
MS.gene013852.t1 | AT2G46590 | 62.264 | 53 | 20 | 0 | 98 | 150 | 75 | 127 | 1.46e-20 | 93.2 |
MS.gene013852.t1 | AT3G52440 | 65.385 | 52 | 18 | 0 | 105 | 156 | 46 | 97 | 1.52e-20 | 91.3 |
MS.gene013852.t1 | AT1G21340 | 66.000 | 50 | 17 | 0 | 105 | 154 | 40 | 89 | 3.31e-20 | 90.1 |
MS.gene013852.t1 | AT1G47655 | 70.213 | 47 | 14 | 0 | 105 | 151 | 31 | 77 | 3.67e-20 | 88.6 |
MS.gene013852.t1 | AT5G62940 | 57.812 | 64 | 26 | 1 | 91 | 153 | 60 | 123 | 8.69e-20 | 90.9 |
MS.gene013852.t1 | AT4G21040 | 63.462 | 52 | 19 | 0 | 105 | 156 | 27 | 78 | 6.44e-18 | 82.8 |
MS.gene013852.t1 | AT4G21080 | 57.895 | 57 | 24 | 0 | 105 | 161 | 27 | 83 | 2.58e-17 | 81.6 |
MS.gene013852.t1 | AT4G21030 | 59.091 | 44 | 18 | 0 | 105 | 148 | 23 | 66 | 2.79e-11 | 62.8 |
Find 118 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTTCTTCATTAGGCTTCT+TGG | 0.163517 | 7.1:+18715663 | None:intergenic |
TTTGGGTGGCTCTCAGATTT+TGG | 0.205376 | 7.1:-18715629 | MS.gene013852:CDS |
GATCATGGTATTATGCTATT+TGG | 0.221788 | 7.1:-18717854 | MS.gene013852:CDS |
AACGAGACTGTATTGAAATT+TGG | 0.235896 | 7.1:-18716261 | MS.gene013852:CDS |
TGTCCAATTCCGGCCAATTC+TGG | 0.261036 | 7.1:-18717809 | MS.gene013852:CDS |
TACTTCATTTCCTTGATTGC+CGG | 0.302888 | 7.1:+18716101 | None:intergenic |
AAAATTATTATATGCTTTCC+TGG | 0.315121 | 7.1:+18715569 | None:intergenic |
TATCTCTATTGTGCTTTCCT+AGG | 0.318213 | 7.1:+18715797 | None:intergenic |
GTGGGCTTGGAATTTACTAT+TGG | 0.321756 | 7.1:+18716615 | None:intergenic |
GGTCCAGAATTGGCCGGAAT+TGG | 0.321957 | 7.1:+18717806 | None:intergenic |
CGTGTTATCTTCGGTGGGCT+TGG | 0.325634 | 7.1:+18716602 | None:intergenic |
GCTATTTGGTTGGAAGATTC+CGG | 0.345460 | 7.1:-18717840 | MS.gene013852:CDS |
GATTCGCAAAGAGGGGTATC+AGG | 0.380348 | 7.1:+18716237 | None:intergenic |
AGAAGGAAAAGACGGTGTTT+TGG | 0.384688 | 7.1:-18715647 | MS.gene013852:CDS |
ACACCTATGTTGGCAATTCC+AGG | 0.386307 | 7.1:-18715943 | MS.gene013852:CDS |
CAGAACACAATGCATCAAAT+TGG | 0.395828 | 7.1:-18716077 | MS.gene013852:CDS |
TTTATCTTGATCCGTATTAC+CGG | 0.399758 | 7.1:+18716575 | None:intergenic |
GGTAGTACCCATGGAGAAAC+AGG | 0.400241 | 7.1:+18716042 | None:intergenic |
TTGGAATAATGTTGCTTCAA+TGG | 0.402306 | 7.1:-18716007 | MS.gene013852:CDS |
CACCAGCAGTCCAGTACCTT+TGG | 0.404005 | 7.1:+18716436 | None:intergenic |
TTATTCCAACCTGGATTCAT+TGG | 0.406197 | 7.1:+18716021 | None:intergenic |
AGACAATTCTTCTGATTCAA+TGG | 0.409932 | 7.1:-18716670 | MS.gene013852:CDS |
TTGGCCGGAATTGGACATTC+CGG | 0.413804 | 7.1:+18717815 | None:intergenic |
TCGTGGTTACTATAATTTGC+CGG | 0.419212 | 7.1:+18716349 | None:intergenic |
ACAAGTAACAGTTGCTGCTC+AGG | 0.422483 | 7.1:-18715835 | MS.gene013852:CDS |
ATCTCTATTGTGCTTTCCTA+GGG | 0.423915 | 7.1:+18715798 | None:intergenic |
GGACACTGAACAATCTTGTC+TGG | 0.427093 | 7.1:+18716540 | None:intergenic |
AACAGTTGCTGCTCAGGAAA+TGG | 0.428682 | 7.1:-18715829 | MS.gene013852:CDS |
CTATTGTGCTTTCCTAGGGT+TGG | 0.437965 | 7.1:+18715802 | None:intergenic |
GCAAGAACTGCCAAAGGTAC+TGG | 0.438215 | 7.1:-18716446 | MS.gene013852:CDS |
TAAAACAGACAAGTGTGTTC+CGG | 0.446244 | 7.1:-18715755 | MS.gene013852:CDS |
CAGTCTCGAAAAGTCCTATC+CGG | 0.447133 | 7.1:-18715699 | MS.gene013852:CDS |
ATGTACCATGGGTCCAGAAT+TGG | 0.447645 | 7.1:+18717796 | None:intergenic |
ACCGGTCTCCGTGTTATCTT+CGG | 0.448248 | 7.1:+18716593 | None:intergenic |
TTCCGATAGGTGCTGGGAGG+CGG | 0.450898 | 7.1:-18716398 | MS.gene013852:CDS |
AGAAATGTTCCGATAGGTGC+TGG | 0.459160 | 7.1:-18716405 | MS.gene013852:CDS |
ATGGTATTATGCTATTTGGT+TGG | 0.461686 | 7.1:-18717850 | MS.gene013852:CDS |
TGGTTGGAAGATTCCGGTGC+CGG | 0.462466 | 7.1:-18717834 | MS.gene013852:CDS |
TACCCCTCTTTGCGAATCAA+TGG | 0.468240 | 7.1:-18716232 | MS.gene013852:CDS |
ACAAGAGTCTATACCAGAAA+AGG | 0.468668 | 7.1:-18716640 | MS.gene013852:CDS |
TAACACGGAGACCGGTAATA+CGG | 0.475853 | 7.1:-18716586 | MS.gene013852:CDS |
GGTGCCGGAATGTCCAATTC+CGG | 0.477329 | 7.1:-18717819 | MS.gene013852:CDS |
GTGTTATCCTGTTTCTCCAT+GGG | 0.479488 | 7.1:-18716049 | MS.gene013852:CDS |
AGGATACTTGCAGCAGTACA+AGG | 0.490268 | 7.1:-18716737 | MS.gene013852:CDS |
GTAACAAACACCGGCAATCA+AGG | 0.493046 | 7.1:-18716111 | MS.gene013852:CDS |
AGTGTTATCCTGTTTCTCCA+TGG | 0.495037 | 7.1:-18716050 | MS.gene013852:CDS |
GGAATTGGACATTCCGGCAC+CGG | 0.499395 | 7.1:+18717821 | None:intergenic |
ACCAAGAAGCCTAATGAAGA+AGG | 0.504636 | 7.1:-18715664 | MS.gene013852:CDS |
GTCTCCGTGTTATCTTCGGT+GGG | 0.507024 | 7.1:+18716597 | None:intergenic |
AGAAGAATTGTCTTGTTGCT+CGG | 0.510082 | 7.1:+18716680 | None:intergenic |
AGCACCTAGCCTCTCAATAC+CGG | 0.512664 | 7.1:-18716368 | MS.gene013852:CDS |
CGTGGTTGGAACTCCATTCG+TGG | 0.513560 | 7.1:+18716332 | None:intergenic |
TTCTCATGCTCATACAATCC+AGG | 0.520401 | 7.1:-18715587 | MS.gene013852:CDS |
CAATACAGTCTCGTTATCCA+TGG | 0.528405 | 7.1:+18716269 | None:intergenic |
TTCCGCCTCCCAGCACCTAT+CGG | 0.529039 | 7.1:+18716396 | None:intergenic |
TGCCAAAGGTACTGGACTGC+TGG | 0.529099 | 7.1:-18716438 | MS.gene013852:CDS |
GTAGTTTCTAGCCTCGTGGT+TGG | 0.531644 | 7.1:+18716318 | None:intergenic |
TATAATTTGCCGGTATTGAG+AGG | 0.538214 | 7.1:+18716359 | None:intergenic |
ACCGAAGATAACACGGAGAC+CGG | 0.539518 | 7.1:-18716594 | MS.gene013852:CDS |
GGAATTGCCAACATAGGTGT+TGG | 0.540068 | 7.1:+18715946 | None:intergenic |
GTGTCCGCGATGCAACAGTT+GGG | 0.540349 | 7.1:-18716523 | MS.gene013852:CDS |
GTTGTTGAAATAACAAAACT+TGG | 0.540457 | 7.1:+18716497 | None:intergenic |
TCTCAGACTCAGAAGGATCA+TGG | 0.542010 | 7.1:-18717869 | MS.gene013852:CDS |
ATTCCATTGATTCGCAAAGA+GGG | 0.549386 | 7.1:+18716229 | None:intergenic |
CGATCACCACCACACATCCA+TGG | 0.550071 | 7.1:-18716286 | MS.gene013852:CDS |
GGATTCATTGGTAGTACCCA+TGG | 0.554215 | 7.1:+18716033 | None:intergenic |
GTAGCTAATGTAGCCCGGAT+AGG | 0.554980 | 7.1:+18715685 | None:intergenic |
GGTCTCCGTGTTATCTTCGG+TGG | 0.555105 | 7.1:+18716596 | None:intergenic |
ATGAGAAATAGCTCCTGAGC+TGG | 0.556629 | 7.1:+18715603 | None:intergenic |
CATGGATGTGTGGTGGTGAT+CGG | 0.559985 | 7.1:+18716287 | None:intergenic |
GGAAATGGCTCACCAACCCT+AGG | 0.561749 | 7.1:-18715814 | MS.gene013852:CDS |
CAGTTCTTGCAGAAATGTCG+AGG | 0.563164 | 7.1:+18716459 | None:intergenic |
CGACTTCGGCATCCATGCAA+TGG | 0.568776 | 7.1:-18715972 | MS.gene013852:CDS |
GATTCCATTGATTCGCAAAG+AGG | 0.571846 | 7.1:+18716228 | None:intergenic |
TCTTGGTAGCTAATGTAGCC+CGG | 0.573000 | 7.1:+18715680 | None:intergenic |
AACTTGTAGCAGCATCACAT+TGG | 0.575411 | 7.1:-18715894 | MS.gene013852:CDS |
AGAACTGTTTGAATTTGCAT+CGG | 0.575677 | 7.1:+18716173 | None:intergenic |
AGTGTCCGCGATGCAACAGT+TGG | 0.576096 | 7.1:-18716524 | MS.gene013852:CDS |
GGCAGCAGTTCATCCGACTT+CGG | 0.576744 | 7.1:-18715986 | MS.gene013852:CDS |
CAAATTATAGTAACCACGAA+TGG | 0.580675 | 7.1:-18716345 | MS.gene013852:CDS |
TCCGGCCAATTCTGGACCCA+TGG | 0.581876 | 7.1:-18717801 | MS.gene013852:intron |
GCAGCAACTGTTACTTGTAG+AGG | 0.584099 | 7.1:+18715840 | None:intergenic |
TGGGTACTACCAATGAATCC+AGG | 0.586175 | 7.1:-18716030 | MS.gene013852:CDS |
CATTGCATGGATGCCGAAGT+CGG | 0.595329 | 7.1:+18715973 | None:intergenic |
AGTCTCGAAAAGTCCTATCC+GGG | 0.597281 | 7.1:-18715698 | MS.gene013852:CDS |
ATTCCTGGAATTGCCAACAT+AGG | 0.597632 | 7.1:+18715940 | None:intergenic |
AGAGAGGAACCGTCCTTGTG+TGG | 0.598119 | 7.1:-18716141 | MS.gene013852:CDS |
TACTACCAATGAATCCAGGT+TGG | 0.601762 | 7.1:-18716026 | MS.gene013852:CDS |
CAGTTCTGTGCAACATAGAG+AGG | 0.603480 | 7.1:-18716157 | MS.gene013852:CDS |
CCTAATGAAGAAGGAAAAGA+CGG | 0.611817 | 7.1:-18715655 | MS.gene013852:CDS |
GAAATGTTCCGATAGGTGCT+GGG | 0.612734 | 7.1:-18716404 | MS.gene013852:CDS |
GGCGGCGAGAGGCAAAGTGA+TGG | 0.613227 | 7.1:+18715865 | None:intergenic |
TTCCATTGATTCGCAAAGAG+GGG | 0.615780 | 7.1:+18716230 | None:intergenic |
GATGCTGCTACAAGTTGTAA+AGG | 0.617256 | 7.1:+18715901 | None:intergenic |
CAGTACAAGGAAAACAGAAG+TGG | 0.617838 | 7.1:-18716724 | MS.gene013852:CDS |
GAAGCAACATTATTCCAACC+TGG | 0.621410 | 7.1:+18716012 | None:intergenic |
GAACATGTCTCAGACTCAGA+AGG | 0.626037 | 7.1:-18717876 | MS.gene013852:CDS |
CAAGCCCACCGAAGATAACA+CGG | 0.626181 | 7.1:-18716601 | MS.gene013852:CDS |
TTGTAGAGGAAGGCGGCGAG+AGG | 0.626239 | 7.1:+18715854 | None:intergenic |
TTTGCCGGTATTGAGAGGCT+AGG | 0.626885 | 7.1:+18716364 | None:intergenic |
ATGGTGTCCAACACCTATGT+TGG | 0.630522 | 7.1:-18715953 | MS.gene013852:CDS |
CAACTGTTACTTGTAGAGGA+AGG | 0.635921 | 7.1:+18715844 | None:intergenic |
GTTTGTAGTTTCTAGCCTCG+TGG | 0.637790 | 7.1:+18716314 | None:intergenic |
AGGTGTTGGACACCATTGCA+TGG | 0.641634 | 7.1:+18715960 | None:intergenic |
CAAAGGTACTGGACTGCTGG+TGG | 0.641821 | 7.1:-18716435 | MS.gene013852:CDS |
ACGATGAGAAATGTTCCGAT+AGG | 0.643759 | 7.1:-18716411 | MS.gene013852:CDS |
GGATCTTCTGTAACAAACAC+CGG | 0.647048 | 7.1:-18716120 | MS.gene013852:CDS |
CGTTATCCATGGATGTGTGG+TGG | 0.660626 | 7.1:+18716280 | None:intergenic |
ACAGAAGATCCACACAAGGA+CGG | 0.669016 | 7.1:+18716132 | None:intergenic |
ACCATGGGTCCAGAATTGGC+CGG | 0.674302 | 7.1:+18717800 | None:intergenic |
GTAGCAGCATCACATTGGAG+TGG | 0.674545 | 7.1:-18715889 | MS.gene013852:CDS |
CTGTTACTTGTAGAGGAAGG+CGG | 0.676133 | 7.1:+18715847 | None:intergenic |
ATTTCTGCAAGAACTGCCAA+AGG | 0.677880 | 7.1:-18716452 | MS.gene013852:CDS |
TCTCGTTATCCATGGATGTG+TGG | 0.680622 | 7.1:+18716277 | None:intergenic |
CGAATGGAGTTCCAACCACG+AGG | 0.695228 | 7.1:-18716329 | MS.gene013852:CDS |
GTGTCCCAACTGTTGCATCG+CGG | 0.715720 | 7.1:+18716519 | None:intergenic |
TGTTACAGAAGATCCACACA+AGG | 0.727736 | 7.1:+18716128 | None:intergenic |
ATGTTCCGATAGGTGCTGGG+AGG | 0.729596 | 7.1:-18716401 | MS.gene013852:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATTGATTTTTGTAATTCT+TGG | - | chr7.1:18716251-18716270 | MS.gene013852:CDS | 15.0% |
!!! | TATTTTGTTTGTTTTCTTAT+GGG | - | chr7.1:18715810-18715829 | MS.gene013852:CDS | 15.0% |
!!! | TTATTTTGTTTGTTTTCTTA+TGG | - | chr7.1:18715809-18715828 | MS.gene013852:CDS | 15.0% |
!! | TATAGTTATATATGTACCAT+GGG | + | chr7.1:18715672-18715691 | None:intergenic | 20.0% |
!! | TATATGTTGCATATGAAAAT+GGG | - | chr7.1:18715765-18715784 | MS.gene013852:CDS | 20.0% |
!! | TTATAGTTATATATGTACCA+TGG | + | chr7.1:18715673-18715692 | None:intergenic | 20.0% |
!!! | ATTTTGTTTGTTTTCTTATG+GGG | - | chr7.1:18715811-18715830 | MS.gene013852:CDS | 20.0% |
!!! | TAATTCGTGGTTTAAATTTT+AGG | - | chr7.1:18716697-18716716 | MS.gene013852:CDS | 20.0% |
!!! | TCTTTATGTTTTAATTGTGA+TGG | - | chr7.1:18716175-18716194 | MS.gene013852:CDS | 20.0% |
!!! | TTTTTTATGATGATTTCTCT+TGG | - | chr7.1:18716352-18716371 | MS.gene013852:CDS | 20.0% |
! | ATTCATCAATCATCAATCAT+TGG | + | chr7.1:18716125-18716144 | None:intergenic | 25.0% |
! | CAATATAATGTAAACAAAGG+CGG | - | chr7.1:18716077-18716096 | MS.gene013852:CDS | 25.0% |
! | CATTTGTACACTTAATTTCT+AGG | - | chr7.1:18716325-18716344 | MS.gene013852:CDS | 25.0% |
! | GACCAATATAATGTAAACAA+AGG | - | chr7.1:18716074-18716093 | MS.gene013852:CDS | 25.0% |
! | GTATATGTTGCATATGAAAA+TGG | - | chr7.1:18715764-18715783 | MS.gene013852:CDS | 25.0% |
! | GTTGTTGAAATAACAAAACT+TGG | + | chr7.1:18716960-18716979 | None:intergenic | 25.0% |
!!! | AGGATAATTTTGTTTCTTAG+TGG | - | chr7.1:18715897-18715916 | MS.gene013852:CDS | 25.0% |
!!! | AGTTGTAAAGGTATATTTTG+TGG | + | chr7.1:18717544-18717563 | None:intergenic | 25.0% |
!!! | ATAATTTTGTTTCTTAGTGG+AGG | - | chr7.1:18715900-18715919 | MS.gene013852:CDS | 25.0% |
AACGAGACTGTATTGAAATT+TGG | - | chr7.1:18717193-18717212 | MS.gene013852:intron | 30.0% | |
ACAACAAATTCTCACATAAC+AGG | + | chr7.1:18716585-18716604 | None:intergenic | 30.0% | |
AGAACTGTTTGAATTTGCAT+CGG | + | chr7.1:18717284-18717303 | None:intergenic | 30.0% | |
AGACAATTCTTCTGATTCAA+TGG | - | chr7.1:18716784-18716803 | MS.gene013852:intron | 30.0% | |
CAAATTATAGTAACCACGAA+TGG | - | chr7.1:18717109-18717128 | MS.gene013852:intron | 30.0% | |
CTTAGTTTATCACTAATTCG+TGG | - | chr7.1:18716684-18716703 | MS.gene013852:CDS | 30.0% | |
GACTAAAGATTGTTATAGTC+CGG | + | chr7.1:18716000-18716019 | None:intergenic | 30.0% | |
GATCATGGTATTATGCTATT+TGG | - | chr7.1:18715600-18715619 | MS.gene013852:CDS | 30.0% | |
TAGACAGAGAAATGAAATCA+AGG | + | chr7.1:18716633-18716652 | None:intergenic | 30.0% | |
TCATTTCTCTGTCTATTCTT+AGG | - | chr7.1:18716638-18716657 | MS.gene013852:CDS | 30.0% | |
TCCAATAGAAGTAAAAGATC+AGG | - | chr7.1:18716496-18716515 | MS.gene013852:CDS | 30.0% | |
TGTTATGCTTGCAAAATTTG+AGG | - | chr7.1:18716537-18716556 | MS.gene013852:CDS | 30.0% | |
TTTATCTTGATCCGTATTAC+CGG | + | chr7.1:18716882-18716901 | None:intergenic | 30.0% | |
! | AGGACACAAGTATAACTTTT+TGG | + | chr7.1:18716565-18716584 | None:intergenic | 30.0% |
! | ATGACTCTAAGAAAATGAAG+AGG | + | chr7.1:18716308-18716327 | None:intergenic | 30.0% |
! | ATGGTATTATGCTATTTGGT+TGG | - | chr7.1:18715604-18715623 | MS.gene013852:CDS | 30.0% |
! | CGCCTTTGTTTACATTATAT+TGG | + | chr7.1:18716079-18716098 | None:intergenic | 30.0% |
! | TCCTGATCTTTTACTTCTAT+TGG | + | chr7.1:18716500-18716519 | None:intergenic | 30.0% |
! | TTGGAATAATGTTGCTTCAA+TGG | - | chr7.1:18717447-18717466 | MS.gene013852:intron | 30.0% |
!! | ATTTTAATGAGCTTGAGGTA+AGG | - | chr7.1:18715943-18715962 | MS.gene013852:CDS | 30.0% |
!! | CAAAATCTTCTGAAGTTTGA+AGG | - | chr7.1:18715877-18715896 | MS.gene013852:CDS | 30.0% |
!! | GATTCATTTTAATGAGCTTG+AGG | - | chr7.1:18715938-18715957 | MS.gene013852:CDS | 30.0% |
!! | GTTCTAATTGTTTTTCGAAC+CGG | + | chr7.1:18717721-18717740 | None:intergenic | 30.0% |
!!! | GTTTTAATTGTGATGGAAGA+TGG | - | chr7.1:18716182-18716201 | MS.gene013852:CDS | 30.0% |
ACAAGAGTCTATACCAGAAA+AGG | - | chr7.1:18716814-18716833 | MS.gene013852:intron | 35.0% | |
ATCTCTATTGTGCTTTCCTA+GGG | + | chr7.1:18717659-18717678 | None:intergenic | 35.0% | |
CAGAACACAATGCATCAAAT+TGG | - | chr7.1:18717377-18717396 | MS.gene013852:intron | 35.0% | |
CCTAATGAAGAAGGAAAAGA+CGG | - | chr7.1:18717799-18717818 | MS.gene013852:intron | 35.0% | |
GAAGAAAGACATAAGCTGAA+AGG | + | chr7.1:18715719-18715738 | None:intergenic | 35.0% | |
TAAAACAGACAAGTGTGTTC+CGG | - | chr7.1:18717699-18717718 | MS.gene013852:intron | 35.0% | |
TACTTCATTTCCTTGATTGC+CGG | + | chr7.1:18717356-18717375 | None:intergenic | 35.0% | |
TAGTAATCCAGAGTTTAGCT+GGG | + | chr7.1:18716038-18716057 | None:intergenic | 35.0% | |
TATCTCTATTGTGCTTTCCT+AGG | + | chr7.1:18717660-18717679 | None:intergenic | 35.0% | |
TGTAAACAAAGGCGGTATTT+AGG | - | chr7.1:18716085-18716104 | MS.gene013852:CDS | 35.0% | |
TGTTGCATATGAAAATGGGT+TGG | - | chr7.1:18715769-18715788 | MS.gene013852:CDS | 35.0% | |
TTATTCCAACCTGGATTCAT+TGG | + | chr7.1:18717436-18717455 | None:intergenic | 35.0% | |
TTGATGTGAACCAAAGGATT+TGG | - | chr7.1:18716275-18716294 | MS.gene013852:CDS | 35.0% | |
! | AGAAGAATTGTCTTGTTGCT+CGG | + | chr7.1:18716777-18716796 | None:intergenic | 35.0% |
! | ATATTTTGTGGCTGAATTCC+TGG | + | chr7.1:18717532-18717551 | None:intergenic | 35.0% |
! | TATAATTTGCCGGTATTGAG+AGG | + | chr7.1:18717098-18717117 | None:intergenic | 35.0% |
! | TATGGGGTTGTTGAGATTTT+TGG | - | chr7.1:18715827-18715846 | MS.gene013852:CDS | 35.0% |
! | TCGTGGTTACTATAATTTGC+CGG | + | chr7.1:18717108-18717127 | None:intergenic | 35.0% |
!! | ATTCCATTGATTCGCAAAGA+GGG | + | chr7.1:18717228-18717247 | None:intergenic | 35.0% |
!!! | AATGGGTTGGACGTAAATTT+TGG | - | chr7.1:18715782-18715801 | MS.gene013852:CDS | 35.0% |
!!! | TTTACTATTGGCTCCTTTTC+TGG | + | chr7.1:18716830-18716849 | None:intergenic | 35.0% |
AACTTGTAGCAGCATCACAT+TGG | - | chr7.1:18717560-18717579 | MS.gene013852:intron | 40.0% | |
ACAAATTGTTCCGTAGAACC+CGG | - | chr7.1:18715966-18715985 | MS.gene013852:CDS | 40.0% | |
ACCAAGAAGCCTAATGAAGA+AGG | - | chr7.1:18717790-18717809 | MS.gene013852:intron | 40.0% | |
ACGATGAGAAATGTTCCGAT+AGG | - | chr7.1:18717043-18717062 | MS.gene013852:intron | 40.0% | |
AGGATCAAGACCAAATCCTT+TGG | + | chr7.1:18716288-18716307 | None:intergenic | 40.0% | |
ATTCCTGGAATTGCCAACAT+AGG | + | chr7.1:18717517-18717536 | None:intergenic | 40.0% | |
ATTTCTGCAAGAACTGCCAA+AGG | - | chr7.1:18717002-18717021 | MS.gene013852:intron | 40.0% | |
CAATACAGTCTCGTTATCCA+TGG | + | chr7.1:18717188-18717207 | None:intergenic | 40.0% | |
CAGTACAAGGAAAACAGAAG+TGG | - | chr7.1:18716730-18716749 | MS.gene013852:CDS | 40.0% | |
CTAGTAATCCAGAGTTTAGC+TGG | + | chr7.1:18716039-18716058 | None:intergenic | 40.0% | |
CTGGATTACTAGAGAGTAGA+GGG | - | chr7.1:18716047-18716066 | MS.gene013852:CDS | 40.0% | |
CTTGGATTGATGTGAACCAA+AGG | - | chr7.1:18716269-18716288 | MS.gene013852:CDS | 40.0% | |
GAAGCAACATTATTCCAACC+TGG | + | chr7.1:18717445-18717464 | None:intergenic | 40.0% | |
GATGCTGCTACAAGTTGTAA+AGG | + | chr7.1:18717556-18717575 | None:intergenic | 40.0% | |
GCTATTTGGTTGGAAGATTC+CGG | - | chr7.1:18715614-18715633 | MS.gene013852:CDS | 40.0% | |
GGATCTTCTGTAACAAACAC+CGG | - | chr7.1:18717334-18717353 | MS.gene013852:intron | 40.0% | |
GTGGGCTTGGAATTTACTAT+TGG | + | chr7.1:18716842-18716861 | None:intergenic | 40.0% | |
TACTACCAATGAATCCAGGT+TGG | - | chr7.1:18717428-18717447 | MS.gene013852:intron | 40.0% | |
TCCTTCTTCATTAGGCTTCT+TGG | + | chr7.1:18717794-18717813 | None:intergenic | 40.0% | |
TCTGGATTACTAGAGAGTAG+AGG | - | chr7.1:18716046-18716065 | MS.gene013852:CDS | 40.0% | |
TGTTACAGAAGATCCACACA+AGG | + | chr7.1:18717329-18717348 | None:intergenic | 40.0% | |
TTATAGTCCGGATTCAAACC+CGG | + | chr7.1:18715988-18716007 | None:intergenic | 40.0% | |
TTCTCATGCTCATACAATCC+AGG | - | chr7.1:18717867-18717886 | MS.gene013852:CDS | 40.0% | |
! | AGAAGGAAAAGACGGTGTTT+TGG | - | chr7.1:18717807-18717826 | MS.gene013852:CDS | 40.0% |
! | AGTGTTATCCTGTTTCTCCA+TGG | - | chr7.1:18717404-18717423 | MS.gene013852:intron | 40.0% |
! | CAACTGTTACTTGTAGAGGA+AGG | + | chr7.1:18717613-18717632 | None:intergenic | 40.0% |
! | CCGTCTTTTCCTTCTTCATT+AGG | + | chr7.1:18717802-18717821 | None:intergenic | 40.0% |
! | GAAGGAAAAGACGGTGTTTT+GGG | - | chr7.1:18717808-18717827 | MS.gene013852:CDS | 40.0% |
! | GTGTTATCCTGTTTCTCCAT+GGG | - | chr7.1:18717405-18717424 | MS.gene013852:intron | 40.0% |
! | TCTGAGATAAGCAGAAGTTG+AGG | - | chr7.1:18716461-18716480 | MS.gene013852:CDS | 40.0% |
!! | GATTCCATTGATTCGCAAAG+AGG | + | chr7.1:18717229-18717248 | None:intergenic | 40.0% |
!! | TTCCATTGATTCGCAAAGAG+GGG | + | chr7.1:18717227-18717246 | None:intergenic | 40.0% |
!!! | GGGTTGTTGAGATTTTTGGT+TGG | - | chr7.1:18715831-18715850 | MS.gene013852:CDS | 40.0% |
!!! | TTGCATCGGCACTTCTTTTT+TGG | + | chr7.1:18717270-18717289 | None:intergenic | 40.0% |
AACAGTTGCTGCTCAGGAAA+TGG | - | chr7.1:18717625-18717644 | MS.gene013852:intron | 45.0% | |
ACAAGTAACAGTTGCTGCTC+AGG | - | chr7.1:18717619-18717638 | MS.gene013852:intron | 45.0% | |
ACACCTATGTTGGCAATTCC+AGG | - | chr7.1:18717511-18717530 | MS.gene013852:intron | 45.0% | |
ACAGAAGATCCACACAAGGA+CGG | + | chr7.1:18717325-18717344 | None:intergenic | 45.0% | |
AGAAATGTTCCGATAGGTGC+TGG | - | chr7.1:18717049-18717068 | MS.gene013852:intron | 45.0% | |
AGGATACTTGCAGCAGTACA+AGG | - | chr7.1:18716717-18716736 | MS.gene013852:CDS | 45.0% | |
AGTCTCGAAAAGTCCTATCC+GGG | - | chr7.1:18717756-18717775 | MS.gene013852:intron | 45.0% | |
ATGAGAAATAGCTCCTGAGC+TGG | + | chr7.1:18717854-18717873 | None:intergenic | 45.0% | |
ATGGTGTCCAACACCTATGT+TGG | - | chr7.1:18717501-18717520 | MS.gene013852:intron | 45.0% | |
ATGTACCATGGGTCCAGAAT+TGG | + | chr7.1:18715661-18715680 | None:intergenic | 45.0% | |
CAAATTGTTCCGTAGAACCC+GGG | - | chr7.1:18715967-18715986 | MS.gene013852:CDS | 45.0% | |
CAGTCTCGAAAAGTCCTATC+CGG | - | chr7.1:18717755-18717774 | MS.gene013852:intron | 45.0% | |
CAGTTCTGTGCAACATAGAG+AGG | - | chr7.1:18717297-18717316 | MS.gene013852:intron | 45.0% | |
CAGTTCTTGCAGAAATGTCG+AGG | + | chr7.1:18716998-18717017 | None:intergenic | 45.0% | |
CTATTGTGCTTTCCTAGGGT+TGG | + | chr7.1:18717655-18717674 | None:intergenic | 45.0% | |
CTTACTTCCCAGCTAAACTC+TGG | - | chr7.1:18716028-18716047 | MS.gene013852:CDS | 45.0% | |
GAAATGTTCCGATAGGTGCT+GGG | - | chr7.1:18717050-18717069 | MS.gene013852:intron | 45.0% | |
GAACATGTCTCAGACTCAGA+AGG | - | chr7.1:18715578-18715597 | MS.gene013852:CDS | 45.0% | |
GGAATTGCCAACATAGGTGT+TGG | + | chr7.1:18717511-18717530 | None:intergenic | 45.0% | |
GGACACTGAACAATCTTGTC+TGG | + | chr7.1:18716917-18716936 | None:intergenic | 45.0% | |
GTAACAAACACCGGCAATCA+AGG | - | chr7.1:18717343-18717362 | MS.gene013852:intron | 45.0% | |
TAACACGGAGACCGGTAATA+CGG | - | chr7.1:18716868-18716887 | MS.gene013852:intron | 45.0% | |
TACCCCTCTTTGCGAATCAA+TGG | - | chr7.1:18717222-18717241 | MS.gene013852:intron | 45.0% | |
TATAGTCCGGATTCAAACCC+GGG | + | chr7.1:18715987-18716006 | None:intergenic | 45.0% | |
TCTCAGACTCAGAAGGATCA+TGG | - | chr7.1:18715585-18715604 | MS.gene013852:CDS | 45.0% | |
TCTCGTTATCCATGGATGTG+TGG | + | chr7.1:18717180-18717199 | None:intergenic | 45.0% | |
TGGGTACTACCAATGAATCC+AGG | - | chr7.1:18717424-18717443 | MS.gene013852:intron | 45.0% | |
! | CTGTTACTTGTAGAGGAAGG+CGG | + | chr7.1:18717610-18717629 | None:intergenic | 45.0% |
! | GCAGCAACTGTTACTTGTAG+AGG | + | chr7.1:18717617-18717636 | None:intergenic | 45.0% |
! | GGATTCATTGGTAGTACCCA+TGG | + | chr7.1:18717424-18717443 | None:intergenic | 45.0% |
! | TCTTGGTAGCTAATGTAGCC+CGG | + | chr7.1:18717777-18717796 | None:intergenic | 45.0% |
! | TTTGGGTGGCTCTCAGATTT+TGG | - | chr7.1:18717825-18717844 | MS.gene013852:CDS | 45.0% |
!! | GTTTGTAGTTTCTAGCCTCG+TGG | + | chr7.1:18717143-18717162 | None:intergenic | 45.0% |
!!! | TGCTCGGTTTTTTCTGCACA+AGG | + | chr7.1:18716761-18716780 | None:intergenic | 45.0% |
ACCGAAGATAACACGGAGAC+CGG | - | chr7.1:18716860-18716879 | MS.gene013852:intron | 50.0% | |
ACCGGTCTCCGTGTTATCTT+CGG | + | chr7.1:18716864-18716883 | None:intergenic | 50.0% | |
AGCACCTAGCCTCTCAATAC+CGG | - | chr7.1:18717086-18717105 | MS.gene013852:intron | 50.0% | |
CAAGCCCACCGAAGATAACA+CGG | - | chr7.1:18716853-18716872 | MS.gene013852:intron | 50.0% | |
CATTGCATGGATGCCGAAGT+CGG | + | chr7.1:18717484-18717503 | None:intergenic | 50.0% | |
CGTTATCCATGGATGTGTGG+TGG | + | chr7.1:18717177-18717196 | None:intergenic | 50.0% | |
GGATTCAAACCCGGGTTCTA+CGG | + | chr7.1:18715979-18715998 | None:intergenic | 50.0% | |
GGTAGTACCCATGGAGAAAC+AGG | + | chr7.1:18717415-18717434 | None:intergenic | 50.0% | |
GTAGAACCCGGGTTTGAATC+CGG | - | chr7.1:18715978-18715997 | MS.gene013852:CDS | 50.0% | |
GTAGCAGCATCACATTGGAG+TGG | - | chr7.1:18717565-18717584 | MS.gene013852:intron | 50.0% | |
GTAGCTAATGTAGCCCGGAT+AGG | + | chr7.1:18717772-18717791 | None:intergenic | 50.0% | |
GTCTCCGTGTTATCTTCGGT+GGG | + | chr7.1:18716860-18716879 | None:intergenic | 50.0% | |
TGTCCAATTCCGGCCAATTC+TGG | - | chr7.1:18715645-18715664 | MS.gene013852:CDS | 50.0% | |
TTGGCCGGAATTGGACATTC+CGG | + | chr7.1:18715642-18715661 | None:intergenic | 50.0% | |
! | CATGGATGTGTGGTGGTGAT+CGG | + | chr7.1:18717170-18717189 | None:intergenic | 50.0% |
! | GCAAGAACTGCCAAAGGTAC+TGG | - | chr7.1:18717008-18717027 | MS.gene013852:intron | 50.0% |
! | TTTGCCGGTATTGAGAGGCT+AGG | + | chr7.1:18717093-18717112 | None:intergenic | 50.0% |
!! | AGGTGTTGGACACCATTGCA+TGG | + | chr7.1:18717497-18717516 | None:intergenic | 50.0% |
!! | CAGATTTTGGAAGCCAGCTC+AGG | - | chr7.1:18717838-18717857 | MS.gene013852:CDS | 50.0% |
!! | GATTCGCAAAGAGGGGTATC+AGG | + | chr7.1:18717220-18717239 | None:intergenic | 50.0% |
!! | GGAAAAGACGGTGTTTTGGG+TGG | - | chr7.1:18717811-18717830 | MS.gene013852:CDS | 50.0% |
!! | GTAGTTTCTAGCCTCGTGGT+TGG | + | chr7.1:18717139-18717158 | None:intergenic | 50.0% |
ACCATGGGTCCAGAATTGGC+CGG | + | chr7.1:18715657-18715676 | None:intergenic | 55.0% | |
AGAGAGGAACCGTCCTTGTG+TGG | - | chr7.1:18717313-18717332 | MS.gene013852:intron | 55.0% | |
AGTGTCCGCGATGCAACAGT+TGG | - | chr7.1:18716930-18716949 | MS.gene013852:intron | 55.0% | |
CACCAGCAGTCCAGTACCTT+TGG | + | chr7.1:18717021-18717040 | None:intergenic | 55.0% | |
CGAATGGAGTTCCAACCACG+AGG | - | chr7.1:18717125-18717144 | MS.gene013852:intron | 55.0% | |
CGACTTCGGCATCCATGCAA+TGG | - | chr7.1:18717482-18717501 | MS.gene013852:intron | 55.0% | |
CGATCACCACCACACATCCA+TGG | - | chr7.1:18717168-18717187 | MS.gene013852:intron | 55.0% | |
CGTGGTTGGAACTCCATTCG+TGG | + | chr7.1:18717125-18717144 | None:intergenic | 55.0% | |
GGAAATGGCTCACCAACCCT+AGG | - | chr7.1:18717640-18717659 | MS.gene013852:intron | 55.0% | |
GGAATTGGACATTCCGGCAC+CGG | + | chr7.1:18715636-18715655 | None:intergenic | 55.0% | |
GGCAGCAGTTCATCCGACTT+CGG | - | chr7.1:18717468-18717487 | MS.gene013852:intron | 55.0% | |
GGTCCAGAATTGGCCGGAAT+TGG | + | chr7.1:18715651-18715670 | None:intergenic | 55.0% | |
GGTCTCCGTGTTATCTTCGG+TGG | + | chr7.1:18716861-18716880 | None:intergenic | 55.0% | |
GTGTCCCAACTGTTGCATCG+CGG | + | chr7.1:18716938-18716957 | None:intergenic | 55.0% | |
GTGTCCGCGATGCAACAGTT+GGG | - | chr7.1:18716931-18716950 | MS.gene013852:intron | 55.0% | |
TGGTTGGAAGATTCCGGTGC+CGG | - | chr7.1:18715620-18715639 | MS.gene013852:CDS | 55.0% | |
! | CGTGTTATCTTCGGTGGGCT+TGG | + | chr7.1:18716855-18716874 | None:intergenic | 55.0% |
! | GGTGCCGGAATGTCCAATTC+CGG | - | chr7.1:18715635-18715654 | MS.gene013852:CDS | 55.0% |
!! | ATGTTCCGATAGGTGCTGGG+AGG | - | chr7.1:18717053-18717072 | MS.gene013852:intron | 55.0% |
!! | CAAAGGTACTGGACTGCTGG+TGG | - | chr7.1:18717019-18717038 | MS.gene013852:intron | 55.0% |
!! | TGCCAAAGGTACTGGACTGC+TGG | - | chr7.1:18717016-18717035 | MS.gene013852:intron | 55.0% |
TCCGGCCAATTCTGGACCCA+TGG | - | chr7.1:18715653-18715672 | MS.gene013852:CDS | 60.0% | |
TTCCGCCTCCCAGCACCTAT+CGG | + | chr7.1:18717061-18717080 | None:intergenic | 60.0% | |
TTGTAGAGGAAGGCGGCGAG+AGG | + | chr7.1:18717603-18717622 | None:intergenic | 60.0% | |
!! | TTCCGATAGGTGCTGGGAGG+CGG | - | chr7.1:18717056-18717075 | MS.gene013852:intron | 60.0% |
GGCGGCGAGAGGCAAAGTGA+TGG | + | chr7.1:18717592-18717611 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 18715576 | 18717900 | 18715576 | ID=MS.gene013852 |
chr7.1 | mRNA | 18715576 | 18717900 | 18715576 | ID=MS.gene013852.t1;Parent=MS.gene013852 |
chr7.1 | exon | 18717802 | 18717900 | 18717802 | ID=MS.gene013852.t1.exon1;Parent=MS.gene013852.t1 |
chr7.1 | CDS | 18717802 | 18717900 | 18717802 | ID=cds.MS.gene013852.t1;Parent=MS.gene013852.t1 |
chr7.1 | exon | 18715576 | 18716757 | 18715576 | ID=MS.gene013852.t1.exon2;Parent=MS.gene013852.t1 |
chr7.1 | CDS | 18715576 | 18716757 | 18715576 | ID=cds.MS.gene013852.t1;Parent=MS.gene013852.t1 |
Gene Sequence |
Protein sequence |