Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013860.t1 | XP_003624740.1 | 97.8 | 272 | 6 | 0 | 1 | 272 | 1 | 272 | 1.20E-132 | 482.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013860.t1 | Q6X7J3 | 48.9 | 282 | 110 | 7 | 5 | 268 | 1 | 266 | 6.4e-47 | 189.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013860.t1 | B7FL74 | 97.8 | 272 | 6 | 0 | 1 | 272 | 1 | 272 | 8.4e-133 | 482.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013860.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013860.t1 | MTR_7g086940 | 98.162 | 272 | 5 | 0 | 1 | 272 | 1 | 272 | 0.0 | 554 |
| MS.gene013860.t1 | MTR_6g027390 | 50.172 | 291 | 93 | 7 | 20 | 272 | 24 | 300 | 4.29e-63 | 200 |
| MS.gene013860.t1 | MTR_7g025010 | 58.333 | 84 | 35 | 0 | 18 | 101 | 37 | 120 | 4.27e-29 | 115 |
| MS.gene013860.t1 | MTR_2g015000 | 61.250 | 80 | 30 | 1 | 13 | 91 | 39 | 118 | 1.04e-27 | 111 |
| MS.gene013860.t1 | MTR_2g015000 | 46.269 | 67 | 36 | 0 | 201 | 267 | 341 | 407 | 1.08e-14 | 73.9 |
| MS.gene013860.t1 | MTR_4g088070 | 60.317 | 63 | 25 | 0 | 26 | 88 | 27 | 89 | 4.20e-22 | 95.1 |
| MS.gene013860.t1 | MTR_4g088080 | 53.333 | 75 | 35 | 0 | 26 | 100 | 38 | 112 | 1.02e-21 | 92.8 |
| MS.gene013860.t1 | MTR_4g084550 | 41.463 | 82 | 46 | 1 | 27 | 106 | 63 | 144 | 2.36e-17 | 78.2 |
| MS.gene013860.t1 | MTR_8g107210 | 44.595 | 74 | 40 | 1 | 25 | 97 | 93 | 166 | 8.71e-15 | 73.6 |
| MS.gene013860.t1 | MTR_1g115315 | 46.774 | 62 | 33 | 0 | 26 | 87 | 83 | 144 | 6.77e-14 | 70.1 |
| MS.gene013860.t1 | MTR_4g063735 | 27.737 | 137 | 98 | 1 | 28 | 163 | 25 | 161 | 7.75e-14 | 70.1 |
| MS.gene013860.t1 | MTR_1g115315 | 46.774 | 62 | 33 | 0 | 26 | 87 | 83 | 144 | 9.99e-14 | 69.7 |
| MS.gene013860.t1 | MTR_3g115620 | 46.032 | 63 | 34 | 0 | 26 | 88 | 80 | 142 | 2.69e-13 | 67.8 |
| MS.gene013860.t1 | MTR_1g019130 | 37.500 | 88 | 52 | 1 | 3 | 90 | 68 | 152 | 2.92e-12 | 65.1 |
| MS.gene013860.t1 | MTR_5g021930 | 30.065 | 153 | 94 | 4 | 27 | 172 | 29 | 175 | 4.73e-12 | 65.5 |
| MS.gene013860.t1 | MTR_7g060630 | 38.806 | 67 | 41 | 0 | 24 | 90 | 4 | 70 | 6.39e-12 | 63.5 |
| MS.gene013860.t1 | MTR_5g081990 | 33.333 | 87 | 58 | 0 | 5 | 91 | 10 | 96 | 6.62e-12 | 63.2 |
| MS.gene013860.t1 | MTR_1g019130 | 37.500 | 88 | 52 | 1 | 3 | 90 | 68 | 152 | 1.63e-11 | 63.2 |
| MS.gene013860.t1 | MTR_7g023810 | 43.077 | 65 | 37 | 0 | 25 | 89 | 65 | 129 | 1.75e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013860.t1 | AT3G03660 | 49.818 | 275 | 104 | 7 | 12 | 268 | 8 | 266 | 2.30e-64 | 202 |
| MS.gene013860.t1 | AT3G03660 | 49.462 | 279 | 107 | 7 | 12 | 272 | 8 | 270 | 1.29e-63 | 201 |
| MS.gene013860.t1 | AT3G03660 | 47.020 | 302 | 101 | 8 | 12 | 268 | 8 | 295 | 4.78e-61 | 195 |
| MS.gene013860.t1 | AT3G03660 | 46.405 | 306 | 105 | 8 | 12 | 272 | 8 | 299 | 1.78e-60 | 194 |
| MS.gene013860.t1 | AT5G17810 | 46.591 | 264 | 118 | 6 | 19 | 268 | 12 | 266 | 8.00e-56 | 181 |
| MS.gene013860.t1 | AT5G17810 | 46.591 | 264 | 118 | 6 | 19 | 268 | 12 | 266 | 8.00e-56 | 181 |
| MS.gene013860.t1 | AT5G17810 | 46.591 | 264 | 117 | 6 | 19 | 268 | 12 | 265 | 8.75e-56 | 181 |
| MS.gene013860.t1 | AT5G45980 | 30.241 | 291 | 163 | 8 | 12 | 266 | 39 | 325 | 2.26e-34 | 127 |
| MS.gene013860.t1 | AT2G33880 | 60.274 | 73 | 29 | 0 | 20 | 92 | 47 | 119 | 4.09e-26 | 105 |
| MS.gene013860.t1 | AT2G33880 | 44.643 | 56 | 31 | 0 | 211 | 266 | 323 | 378 | 2.63e-12 | 66.6 |
| MS.gene013860.t1 | AT2G33880 | 60.274 | 73 | 29 | 0 | 20 | 92 | 47 | 119 | 4.76e-26 | 105 |
| MS.gene013860.t1 | AT2G33880 | 46.429 | 56 | 30 | 0 | 211 | 266 | 323 | 378 | 2.33e-12 | 66.6 |
| MS.gene013860.t1 | AT4G35550 | 45.312 | 64 | 35 | 0 | 25 | 88 | 96 | 159 | 5.37e-14 | 70.5 |
| MS.gene013860.t1 | AT1G20700 | 41.429 | 70 | 41 | 0 | 25 | 94 | 30 | 99 | 4.41e-13 | 65.9 |
| MS.gene013860.t1 | AT5G59340 | 36.111 | 72 | 46 | 0 | 27 | 98 | 13 | 84 | 6.42e-13 | 67.4 |
| MS.gene013860.t1 | AT1G46480 | 35.714 | 98 | 54 | 2 | 4 | 99 | 71 | 161 | 7.80e-13 | 65.9 |
| MS.gene013860.t1 | AT3G18010 | 42.029 | 69 | 39 | 1 | 25 | 92 | 73 | 141 | 8.23e-13 | 67.8 |
| MS.gene013860.t1 | AT1G20700 | 41.429 | 70 | 41 | 0 | 25 | 94 | 92 | 161 | 1.07e-12 | 65.9 |
| MS.gene013860.t1 | AT1G20700 | 41.429 | 70 | 41 | 0 | 25 | 94 | 92 | 161 | 1.09e-12 | 65.9 |
| MS.gene013860.t1 | AT2G28610 | 39.062 | 64 | 39 | 0 | 27 | 90 | 7 | 70 | 4.94e-12 | 64.7 |
| MS.gene013860.t1 | AT5G05770 | 33.735 | 83 | 54 | 1 | 28 | 110 | 29 | 110 | 4.96e-12 | 62.0 |
| MS.gene013860.t1 | AT1G46480 | 35.714 | 98 | 54 | 2 | 4 | 99 | 71 | 161 | 5.94e-12 | 64.7 |
| MS.gene013860.t1 | AT2G17950 | 40.625 | 64 | 37 | 1 | 27 | 89 | 37 | 100 | 1.64e-11 | 63.5 |
| MS.gene013860.t1 | AT3G11260 | 37.500 | 64 | 40 | 0 | 28 | 91 | 24 | 87 | 2.38e-11 | 61.6 |
Find 68 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGAGTGATAGTTGAAATT+AGG | 0.234117 | 7.1:+18586059 | None:intergenic |
| TCTTGTTTAAATGATTCTTC+TGG | 0.294809 | 7.1:-18586221 | MS.gene013860:CDS |
| ACGAGAATTTGTTCTGGTTT+TGG | 0.305058 | 7.1:+18586539 | None:intergenic |
| TGTTGGGTTGGAGTGTTGTT+GGG | 0.318471 | 7.1:+18586602 | None:intergenic |
| AGAAAACTTCTTGAGAAATT+CGG | 0.326558 | 7.1:-18586455 | MS.gene013860:CDS |
| GTTGGGTTGGAGTGTTGTTG+GGG | 0.328214 | 7.1:+18586603 | None:intergenic |
| GAGATCTAGACCGGCGGTTT+TGG | 0.333606 | 7.1:+18586399 | None:intergenic |
| CAAGTGTGGCCTGCTGCATC+TGG | 0.348372 | 7.1:+18586363 | None:intergenic |
| AAGATGCCATGTTCATTTGT+AGG | 0.357603 | 7.1:+18584170 | None:intergenic |
| ATGTTGGGTTGGAGTGTTGT+TGG | 0.365481 | 7.1:+18586601 | None:intergenic |
| ACATGGTGAAAGCTACTTTC+TGG | 0.379822 | 7.1:-18584132 | MS.gene013860:intron |
| GGGTTGGAGTGTTGTTGGGG+GGG | 0.381125 | 7.1:+18586606 | None:intergenic |
| CCATGTTCATTTGTAGGAAC+TGG | 0.385723 | 7.1:+18584176 | None:intergenic |
| TTGGGTTGGAGTGTTGTTGG+GGG | 0.394607 | 7.1:+18586604 | None:intergenic |
| CTAGACATCAAAACAGTGTT+TGG | 0.400410 | 7.1:-18584233 | MS.gene013860:CDS |
| TCATGTGGTGGTGTTCTTAG+TGG | 0.413935 | 7.1:-18586185 | MS.gene013860:CDS |
| CCTGCTGCATCTGGCGTTGT+CGG | 0.413984 | 7.1:+18586372 | None:intergenic |
| GGAGGTGCTAGTACTGTAAC+AGG | 0.420294 | 7.1:-18584308 | MS.gene013860:CDS |
| CCGACAACGCCAGATGCAGC+AGG | 0.426272 | 7.1:-18586372 | MS.gene013860:CDS |
| GGTGTCCACCTTGACCTAAC+CGG | 0.426373 | 7.1:+18586560 | None:intergenic |
| TGGGTTGGAGTGTTGTTGGG+GGG | 0.427678 | 7.1:+18586605 | None:intergenic |
| TGGCAACAGTGTTTATCAAT+GGG | 0.442136 | 7.1:-18584283 | MS.gene013860:CDS |
| AAGTGCAATTCCTTGTGATA+TGG | 0.444028 | 7.1:-18586282 | MS.gene013860:CDS |
| TCAAGTACGAGAATTTGTTC+TGG | 0.444554 | 7.1:+18586533 | None:intergenic |
| TTGGCAACAGTGTTTATCAA+TGG | 0.459800 | 7.1:-18584284 | MS.gene013860:CDS |
| CCGAGAAAACTGAACCGGTT+AGG | 0.473633 | 7.1:-18586574 | MS.gene013860:CDS |
| TAGTTGAAATTAGGAGAAAG+AGG | 0.501074 | 7.1:+18586068 | None:intergenic |
| CACCATGCCACTGTTGAAGA+TGG | 0.505097 | 7.1:+18586508 | None:intergenic |
| GGTTCTTCCTCTTCATCATG+TGG | 0.507710 | 7.1:-18586200 | MS.gene013860:CDS |
| GTGATGTTAGTTCATTCCTC+TGG | 0.509716 | 7.1:-18584203 | MS.gene013860:CDS |
| CCTAATTTCAACTATCACTC+TGG | 0.510567 | 7.1:-18586059 | MS.gene013860:intron |
| TTCTCGGAACCATGTTGGGT+TGG | 0.525597 | 7.1:+18586590 | None:intergenic |
| TGGTTCCGAGAAAACTGAAC+CGG | 0.529515 | 7.1:-18586579 | MS.gene013860:CDS |
| GTGATGCTAACGTCTTCTAC+TGG | 0.530664 | 7.1:-18586424 | MS.gene013860:CDS |
| TGCTAGTACTGTAACAGGAT+TGG | 0.531847 | 7.1:-18584303 | MS.gene013860:CDS |
| AGTGGTCAACAAGGCATGGA+TGG | 0.541797 | 7.1:-18586167 | MS.gene013860:CDS |
| TGGTATTATTAAGGATATGG+AGG | 0.551703 | 7.1:-18584326 | MS.gene013860:intron |
| TGAAATTAGGAGAAAGAGGA+GGG | 0.553578 | 7.1:+18586072 | None:intergenic |
| CTTGAGAAATTCGGCAACGT+CGG | 0.555714 | 7.1:-18586446 | MS.gene013860:CDS |
| ATTTCTTTGCTGATCAAGTG+TGG | 0.555910 | 7.1:+18586349 | None:intergenic |
| AACACCACCACATGATGAAG+AGG | 0.558375 | 7.1:+18586193 | None:intergenic |
| TTGAAATTAGGAGAAAGAGG+AGG | 0.567678 | 7.1:+18586071 | None:intergenic |
| GCTGCATCTGGCGTTGTCGG+CGG | 0.572272 | 7.1:+18586375 | None:intergenic |
| TCTTCCTCTTCATCATGTGG+TGG | 0.579085 | 7.1:-18586197 | MS.gene013860:CDS |
| AGAAGAATCATTTAAACAAG+AGG | 0.579493 | 7.1:+18586223 | None:intergenic |
| ATTGCAACAGAAATTCAAGC+AGG | 0.580804 | 7.1:-18584260 | MS.gene013860:CDS |
| GTCGGCGGCGAGATCTAGAC+CGG | 0.586191 | 7.1:+18586390 | None:intergenic |
| TGATCAGCAAAGAAATCAGA+TGG | 0.591537 | 7.1:-18586342 | MS.gene013860:CDS |
| TCTTAGTGGTCAACAAGGCA+TGG | 0.594370 | 7.1:-18586171 | MS.gene013860:CDS |
| CCAGTTCCTACAAATGAACA+TGG | 0.595290 | 7.1:-18584176 | MS.gene013860:CDS |
| AGAATCATTTAAACAAGAGG+AGG | 0.602089 | 7.1:+18586226 | None:intergenic |
| AGATGGCTATGATGCAGCCT+CGG | 0.602643 | 7.1:-18586325 | MS.gene013860:CDS |
| AGAGGAGGGCACAAAAGTGA+TGG | 0.605244 | 7.1:+18586086 | None:intergenic |
| AAACTGAACCGGTTAGGTCA+AGG | 0.615654 | 7.1:-18586568 | MS.gene013860:CDS |
| AACAACACTCCAACCCAACA+TGG | 0.616195 | 7.1:-18586599 | MS.gene013860:CDS |
| GTCCATCTTCAACAGTGGCA+TGG | 0.623516 | 7.1:-18586510 | MS.gene013860:CDS |
| TCTACTGGTTCCAAAACCGC+CGG | 0.624539 | 7.1:-18586409 | MS.gene013860:CDS |
| CTTGAGTCCATCTTCAACAG+TGG | 0.626929 | 7.1:-18586515 | MS.gene013860:CDS |
| GGTTCAAACCAACCCAACCA+TGG | 0.628192 | 7.1:-18586261 | MS.gene013860:CDS |
| TTGCAACAGAAATTCAAGCA+GGG | 0.656089 | 7.1:-18584259 | MS.gene013860:CDS |
| TTGGTTTGAACCATATCACA+AGG | 0.660599 | 7.1:+18586272 | None:intergenic |
| GGTGTTCTTAGTGGTCAACA+AGG | 0.660710 | 7.1:-18586176 | MS.gene013860:CDS |
| TGTAGGAACTGGCACACCAG+AGG | 0.661943 | 7.1:+18584187 | None:intergenic |
| TTGATTCAGAGCTTGCAACA+TGG | 0.664561 | 7.1:-18584149 | MS.gene013860:CDS |
| CCATCGTTAACAACTTGCCG+AGG | 0.664611 | 7.1:+18586308 | None:intergenic |
| CCTCGGCAAGTTGTTAACGA+TGG | 0.666853 | 7.1:-18586308 | MS.gene013860:CDS |
| CTGAACCGGTTAGGTCAAGG+TGG | 0.696695 | 7.1:-18586565 | MS.gene013860:CDS |
| GGCGGCGAGATCTAGACCGG+CGG | 0.697708 | 7.1:+18586393 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAACATAATCT+AGG | + | chr7.1:18584822-18584841 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACATAATCTA+GGG | + | chr7.1:18584821-18584840 | None:intergenic | 10.0% |
| !! | AAATAATACAAAATTATTTG+TGG | + | chr7.1:18584006-18584025 | None:intergenic | 10.0% |
| !! | TATTAAGTGAATTAAAATAT+AGG | + | chr7.1:18586515-18586534 | None:intergenic | 10.0% |
| !! | TGTTCTAATAAATAAAAAAT+TGG | - | chr7.1:18585545-18585564 | MS.gene013860:intron | 10.0% |
| !!! | AAAAATTATTTTAAAATCCA+TGG | - | chr7.1:18583924-18583943 | MS.gene013860:intron | 10.0% |
| !!! | GAATAATTTTATATAAATGT+TGG | + | chr7.1:18584917-18584936 | None:intergenic | 10.0% |
| !! | AAAAAAAATAAGATTAGAGA+AGG | - | chr7.1:18584249-18584268 | MS.gene013860:CDS | 15.0% |
| !! | AAATTTATCTAAATTGGATT+AGG | + | chr7.1:18584143-18584162 | None:intergenic | 15.0% |
| !! | AACAATATTTGGTATTATTA+AGG | - | chr7.1:18585577-18585596 | MS.gene013860:intron | 15.0% |
| !! | ATCATAATTAACAATTTCAT+TGG | - | chr7.1:18584290-18584309 | MS.gene013860:CDS | 15.0% |
| !! | GAATAATACAAAATTATTTG+TGG | + | chr7.1:18584041-18584060 | None:intergenic | 15.0% |
| !! | TTAAAAAAAGTTCATGTTTA+TGG | - | chr7.1:18584577-18584596 | MS.gene013860:intron | 15.0% |
| !!! | AAATTTGTTTATTATATGCA+TGG | - | chr7.1:18584175-18584194 | MS.gene013860:CDS | 15.0% |
| !!! | AGTTTGAAATTTATCTAAAT+TGG | + | chr7.1:18584149-18584168 | None:intergenic | 15.0% |
| !!! | ATATATAGCAGATTTTATTT+TGG | + | chr7.1:18585095-18585114 | None:intergenic | 15.0% |
| !!! | GAACTTGTAATTTTTTTTAA+CGG | + | chr7.1:18584947-18584966 | None:intergenic | 15.0% |
| !!! | TATATAGCAGATTTTATTTT+GGG | + | chr7.1:18585094-18585113 | None:intergenic | 15.0% |
| !!! | TTGTAAATTTTCAATTAAGT+TGG | + | chr7.1:18585023-18585042 | None:intergenic | 15.0% |
| !! | AAAAAAGTGAGAGAATAAAA+AGG | + | chr7.1:18584749-18584768 | None:intergenic | 20.0% |
| !! | AATTAGAATATGAAAACACA+TGG | - | chr7.1:18586036-18586055 | MS.gene013860:intron | 20.0% |
| !! | ATTTGACATGATTAAAATAC+AGG | + | chr7.1:18586477-18586496 | None:intergenic | 20.0% |
| !! | ATTTGGTATTATTAAGGATA+TGG | - | chr7.1:18585583-18585602 | MS.gene013860:intron | 20.0% |
| !! | CAAATTTGATTAACAATTCT+TGG | + | chr7.1:18585212-18585231 | None:intergenic | 20.0% |
| !! | CAAGAATTGTTAATCAAATT+TGG | - | chr7.1:18585210-18585229 | MS.gene013860:intron | 20.0% |
| !! | TGTACAGATATGAAAATTAT+AGG | + | chr7.1:18585320-18585339 | None:intergenic | 20.0% |
| !!! | ATATAGCAGATTTTATTTTG+GGG | + | chr7.1:18585093-18585112 | None:intergenic | 20.0% |
| !!! | ATCACTTTAACTTAATTGTT+TGG | - | chr7.1:18585270-18585289 | MS.gene013860:intron | 20.0% |
| !!! | ATTGTTTTGAAAATGTATGA+TGG | + | chr7.1:18585819-18585838 | None:intergenic | 20.0% |
| !!! | ATTTTGATAGTTTCTTCTTT+TGG | + | chr7.1:18583436-18583455 | None:intergenic | 20.0% |
| !!! | CATTAACTTCAAAATGTTTT+CGG | - | chr7.1:18586410-18586429 | MS.gene013860:CDS | 20.0% |
| !!! | TAAATTTTCAATTAAGTTGG+TGG | + | chr7.1:18585020-18585039 | None:intergenic | 20.0% |
| !!! | TTTTCAAATAAGTAACCATA+AGG | + | chr7.1:18585904-18585923 | None:intergenic | 20.0% |
| !!! | TTTTCATATTCTAATTGATG+TGG | + | chr7.1:18586032-18586051 | None:intergenic | 20.0% |
| !!! | TTTTGATAGTTTCTTCTTTT+GGG | + | chr7.1:18583435-18583454 | None:intergenic | 20.0% |
| ! | AAAATCTGTAACATCAGATT+TGG | + | chr7.1:18584470-18584489 | None:intergenic | 25.0% |
| ! | AGAAAACTTCTTGAGAAATT+CGG | - | chr7.1:18583457-18583476 | MS.gene013860:intron | 25.0% |
| ! | AGAAGAATCATTTAAACAAG+AGG | + | chr7.1:18583692-18583711 | None:intergenic | 25.0% |
| ! | CAAAAAAACTCCTTAATTAC+TGG | + | chr7.1:18586577-18586596 | None:intergenic | 25.0% |
| ! | CATATCATTTCACTTGAATA+TGG | - | chr7.1:18586228-18586247 | MS.gene013860:CDS | 25.0% |
| ! | CATATTCAAGTGAAATGATA+TGG | + | chr7.1:18586230-18586249 | None:intergenic | 25.0% |
| ! | CCATTCACATATGTAAAATT+TGG | + | chr7.1:18584371-18584390 | None:intergenic | 25.0% |
| ! | GTATCATGATTATCAAACTT+TGG | - | chr7.1:18586598-18586617 | MS.gene013860:CDS | 25.0% |
| ! | TGCAAAATAATTGTACACAA+CGG | + | chr7.1:18585988-18586007 | None:intergenic | 25.0% |
| ! | TGCATATTTGAATTCATAGT+TGG | - | chr7.1:18584510-18584529 | MS.gene013860:intron | 25.0% |
| ! | TGTTTATGGAATGATTGATT+AGG | - | chr7.1:18584591-18584610 | MS.gene013860:intron | 25.0% |
| !! | AAAAAACATAATCTAGGGTT+TGG | + | chr7.1:18584816-18584835 | None:intergenic | 25.0% |
| !! | AAACTCTTTTACACTAACAA+TGG | - | chr7.1:18586341-18586360 | MS.gene013860:CDS | 25.0% |
| !! | AACATCAGATTTGGAATTTA+TGG | + | chr7.1:18584461-18584480 | None:intergenic | 25.0% |
| !! | AACTCTTTTACACTAACAAT+GGG | - | chr7.1:18586342-18586361 | MS.gene013860:CDS | 25.0% |
| !! | ATTATCAAACTTTGGTTTAC+AGG | - | chr7.1:18586606-18586625 | MS.gene013860:CDS | 25.0% |
| !! | CCAAATTTTACATATGTGAA+TGG | - | chr7.1:18584368-18584387 | MS.gene013860:intron | 25.0% |
| !! | TCTTGTTTAAATGATTCTTC+TGG | - | chr7.1:18583691-18583710 | MS.gene013860:intron | 25.0% |
| !! | TTTTCAGTTTCTTCTCAAAT+GGG | - | chr7.1:18583772-18583791 | MS.gene013860:intron | 25.0% |
| !!! | CTTGTGATTTTAGTATGAAT+TGG | + | chr7.1:18583956-18583975 | None:intergenic | 25.0% |
| !!! | CTTTTTTTAAACTAAGTGCA+TGG | + | chr7.1:18584567-18584586 | None:intergenic | 25.0% |
| !!! | TTTGATAGTTTCTTCTTTTG+GGG | + | chr7.1:18583434-18583453 | None:intergenic | 25.0% |
| AAATCATCTCATCTGATTGT+TGG | - | chr7.1:18584849-18584868 | MS.gene013860:intron | 30.0% | |
| AAGTGAGAGAATAAAAAGGA+AGG | + | chr7.1:18584745-18584764 | None:intergenic | 30.0% | |
| AATGATACATGAAAAGACGA+TGG | - | chr7.1:18586271-18586290 | MS.gene013860:CDS | 30.0% | |
| AATTGTTTGGTTATCTACGA+TGG | - | chr7.1:18585283-18585302 | MS.gene013860:intron | 30.0% | |
| ACATTGAACTAAAGCTAGTT+AGG | - | chr7.1:18586440-18586459 | MS.gene013860:CDS | 30.0% | |
| AGAATCATTTAAACAAGAGG+AGG | + | chr7.1:18583689-18583708 | None:intergenic | 30.0% | |
| AGTTAAAAAAAATGTCGTCG+CGG | + | chr7.1:18585123-18585142 | None:intergenic | 30.0% | |
| ATGGTGAATAATTTCCAAAG+AGG | + | chr7.1:18584878-18584897 | None:intergenic | 30.0% | |
| ATTGTTTGGTTATCTACGAT+GGG | - | chr7.1:18585284-18585303 | MS.gene013860:intron | 30.0% | |
| GTGATTGTGATATGAAATTC+AGG | - | chr7.1:18585428-18585447 | MS.gene013860:intron | 30.0% | |
| TAGTTGAAATTAGGAGAAAG+AGG | + | chr7.1:18583847-18583866 | None:intergenic | 30.0% | |
| TGGTAAAAACTAGTGATGTA+TGG | + | chr7.1:18584897-18584916 | None:intergenic | 30.0% | |
| TGGTATTATTAAGGATATGG+AGG | - | chr7.1:18585586-18585605 | MS.gene013860:intron | 30.0% | |
| TGGTGAATAATTTCCAAAGA+GGG | + | chr7.1:18584877-18584896 | None:intergenic | 30.0% | |
| TTGTATTTGACCAATGTGTA+TGG | - | chr7.1:18585519-18585538 | MS.gene013860:intron | 30.0% | |
| ! | ACTCTTTTACACTAACAATG+GGG | - | chr7.1:18586343-18586362 | MS.gene013860:CDS | 30.0% |
| ! | AGGCTTTGATGTTAATATGT+TGG | + | chr7.1:18584123-18584142 | None:intergenic | 30.0% |
| ! | ATTAGAGAAGGCATATACAA+AGG | - | chr7.1:18584261-18584280 | MS.gene013860:CDS | 30.0% |
| ! | CATTTTCTTTTCTCTCCTTA+TGG | - | chr7.1:18585886-18585905 | MS.gene013860:intron | 30.0% |
| ! | GGTCAAGTTCTAACAATATT+TGG | - | chr7.1:18585566-18585585 | MS.gene013860:intron | 30.0% |
| ! | GTTTTCAGTTTCTTCTCAAA+TGG | - | chr7.1:18583771-18583790 | MS.gene013860:intron | 30.0% |
| ! | TTGACTTCTTAATGATAACG+TGG | - | chr7.1:18585341-18585360 | MS.gene013860:intron | 30.0% |
| !! | TTGATAGTTTCTTCTTTTGG+GGG | + | chr7.1:18583433-18583452 | None:intergenic | 30.0% |
| AAGATGCCATGTTCATTTGT+AGG | + | chr7.1:18585745-18585764 | None:intergenic | 35.0% | |
| AAGTGCAATTCCTTGTGATA+TGG | - | chr7.1:18583630-18583649 | MS.gene013860:intron | 35.0% | |
| ATTGCAACAGAAATTCAAGC+AGG | - | chr7.1:18585652-18585671 | MS.gene013860:intron | 35.0% | |
| ATTTCTTTGCTGATCAAGTG+TGG | + | chr7.1:18583566-18583585 | None:intergenic | 35.0% | |
| CCAGAGTGATAGTTGAAATT+AGG | + | chr7.1:18583856-18583875 | None:intergenic | 35.0% | |
| CCTAATTTCAACTATCACTC+TGG | - | chr7.1:18583853-18583872 | MS.gene013860:intron | 35.0% | |
| CTAGACATCAAAACAGTGTT+TGG | - | chr7.1:18585679-18585698 | MS.gene013860:intron | 35.0% | |
| GATTGATTAGGTTACAGGAT+GGG | - | chr7.1:18584603-18584622 | MS.gene013860:intron | 35.0% | |
| GGAATGATTGATTAGGTTAC+AGG | - | chr7.1:18584598-18584617 | MS.gene013860:intron | 35.0% | |
| TAGAACATCACCATACACAT+TGG | + | chr7.1:18585532-18585551 | None:intergenic | 35.0% | |
| TCAACTATCACTCTGGTAAT+TGG | - | chr7.1:18583860-18583879 | MS.gene013860:intron | 35.0% | |
| TCCTACTACTCCAGTAATTA+AGG | - | chr7.1:18586564-18586583 | MS.gene013860:CDS | 35.0% | |
| TCCTTAATTACTGGAGTAGT+AGG | + | chr7.1:18586568-18586587 | None:intergenic | 35.0% | |
| TCGTAGTTGACACATATGAT+TGG | + | chr7.1:18584399-18584418 | None:intergenic | 35.0% | |
| TGAAATTAGGAGAAAGAGGA+GGG | + | chr7.1:18583843-18583862 | None:intergenic | 35.0% | |
| TGATCAGCAAAGAAATCAGA+TGG | - | chr7.1:18583570-18583589 | MS.gene013860:intron | 35.0% | |
| TGATTGATTAGGTTACAGGA+TGG | - | chr7.1:18584602-18584621 | MS.gene013860:intron | 35.0% | |
| TGCATGAAAGTTGTTCTTTC+CGG | - | chr7.1:18584681-18584700 | MS.gene013860:intron | 35.0% | |
| TGGCAACAGTGTTTATCAAT+GGG | - | chr7.1:18585629-18585648 | MS.gene013860:intron | 35.0% | |
| TTCATGCAACAATTCAAACG+CGG | + | chr7.1:18584669-18584688 | None:intergenic | 35.0% | |
| TTGAAATTAGGAGAAAGAGG+AGG | + | chr7.1:18583844-18583863 | None:intergenic | 35.0% | |
| TTGCAACAGAAATTCAAGCA+GGG | - | chr7.1:18585653-18585672 | MS.gene013860:intron | 35.0% | |
| TTGGCAACAGTGTTTATCAA+TGG | - | chr7.1:18585628-18585647 | MS.gene013860:intron | 35.0% | |
| ! | AAAACATGAACGCTACTTTC+CGG | - | chr7.1:18584705-18584724 | MS.gene013860:intron | 35.0% |
| ! | AAGACGATGGTGTTTTTCAT+TGG | - | chr7.1:18586284-18586303 | MS.gene013860:CDS | 35.0% |
| ! | AAGTAGCGTTCATGTTTTTC+CGG | + | chr7.1:18584703-18584722 | None:intergenic | 35.0% |
| ! | CTCTTTTACACTAACAATGG+GGG | - | chr7.1:18586344-18586363 | MS.gene013860:CDS | 35.0% |
| ! | TCAAGTACGAGAATTTGTTC+TGG | + | chr7.1:18583382-18583401 | None:intergenic | 35.0% |
| ! | TTGGGGTAAAGTCTGAAATT+TGG | + | chr7.1:18585076-18585095 | None:intergenic | 35.0% |
| ! | TTGGTTTGAACCATATCACA+AGG | + | chr7.1:18583643-18583662 | None:intergenic | 35.0% |
| !! | TCTTCTCAAATGGGTTTTCT+TGG | - | chr7.1:18583781-18583800 | MS.gene013860:intron | 35.0% |
| !!! | AACACTGTTTTGATGTCTAG+TGG | + | chr7.1:18585679-18585698 | None:intergenic | 35.0% |
| !!! | ACGAGAATTTGTTCTGGTTT+TGG | + | chr7.1:18583376-18583395 | None:intergenic | 35.0% |
| !!! | GGATCTATTGATTTTGCACA+AGG | + | chr7.1:18584999-18585018 | None:intergenic | 35.0% |
| AACCACCAAAAACCATGGTT+GGG | + | chr7.1:18583666-18583685 | None:intergenic | 40.0% | |
| AGGATGGGTACAGAATAAAG+TGG | - | chr7.1:18584618-18584637 | MS.gene013860:intron | 40.0% | |
| CCAGTTCCTACAAATGAACA+TGG | - | chr7.1:18585736-18585755 | MS.gene013860:intron | 40.0% | |
| CCATGTTCATTTGTAGGAAC+TGG | + | chr7.1:18585739-18585758 | None:intergenic | 40.0% | |
| GGATGGGTACAGAATAAAGT+GGG | - | chr7.1:18584619-18584638 | MS.gene013860:intron | 40.0% | |
| GTATGAATTGGATTGCTCCA+TGG | + | chr7.1:18583944-18583963 | None:intergenic | 40.0% | |
| GTGATGTTAGTTCATTCCTC+TGG | - | chr7.1:18585709-18585728 | MS.gene013860:intron | 40.0% | |
| TGCTAGTACTGTAACAGGAT+TGG | - | chr7.1:18585609-18585628 | MS.gene013860:intron | 40.0% | |
| TTGATTCAGAGCTTGCAACA+TGG | - | chr7.1:18585763-18585782 | MS.gene013860:intron | 40.0% | |
| ! | ACATGGTGAAAGCTACTTTC+TGG | - | chr7.1:18585780-18585799 | MS.gene013860:intron | 40.0% |
| ! | AGTTTTCTCGGAACCATGTT+GGG | + | chr7.1:18583329-18583348 | None:intergenic | 40.0% |
| ! | GAAAGCTACTTTCTGGTACT+TGG | - | chr7.1:18585787-18585806 | MS.gene013860:intron | 40.0% |
| !! | GTTATCTACGATGGGTTGAA+AGG | - | chr7.1:18585292-18585311 | MS.gene013860:intron | 40.0% |
| !! | TTTTCAAGCACGAACGTTTC+AGG | + | chr7.1:18585241-18585260 | None:intergenic | 40.0% |
| AAACTGAACCGGTTAGGTCA+AGG | - | chr7.1:18583344-18583363 | MS.gene013860:intron | 45.0% | |
| AACAACACTCCAACCCAACA+TGG | - | chr7.1:18583313-18583332 | MS.gene013860:intron | 45.0% | |
| AACACCACCACATGATGAAG+AGG | + | chr7.1:18583722-18583741 | None:intergenic | 45.0% | |
| AACGCGGAACTGTCAAATCA+AGG | + | chr7.1:18584653-18584672 | None:intergenic | 45.0% | |
| ACCAAAAACCATGGTTGGGT+TGG | + | chr7.1:18583662-18583681 | None:intergenic | 45.0% | |
| CTTGAGAAATTCGGCAACGT+CGG | - | chr7.1:18583466-18583485 | MS.gene013860:intron | 45.0% | |
| CTTGAGTCCATCTTCAACAG+TGG | - | chr7.1:18583397-18583416 | MS.gene013860:intron | 45.0% | |
| GAACCACCAAAAACCATGGT+TGG | + | chr7.1:18583667-18583686 | None:intergenic | 45.0% | |
| GGTGTTCTTAGTGGTCAACA+AGG | - | chr7.1:18583736-18583755 | MS.gene013860:intron | 45.0% | |
| GGTTCTTCCTCTTCATCATG+TGG | - | chr7.1:18583712-18583731 | MS.gene013860:intron | 45.0% | |
| GTGATGCTAACGTCTTCTAC+TGG | - | chr7.1:18583488-18583507 | MS.gene013860:intron | 45.0% | |
| TCTTAGTGGTCAACAAGGCA+TGG | - | chr7.1:18583741-18583760 | MS.gene013860:intron | 45.0% | |
| TCTTCCTCTTCATCATGTGG+TGG | - | chr7.1:18583715-18583734 | MS.gene013860:intron | 45.0% | |
| TGGTTCCGAGAAAACTGAAC+CGG | - | chr7.1:18583333-18583352 | MS.gene013860:intron | 45.0% | |
| TTGATGTGGCAACGCTTCAT+TGG | + | chr7.1:18586018-18586037 | None:intergenic | 45.0% | |
| ! | ACCAACCCAACCATGGTTTT+TGG | - | chr7.1:18583658-18583677 | MS.gene013860:intron | 45.0% |
| ! | CAGTTTTCTCGGAACCATGT+TGG | + | chr7.1:18583330-18583349 | None:intergenic | 45.0% |
| ! | TCATGTGGTGGTGTTCTTAG+TGG | - | chr7.1:18583727-18583746 | MS.gene013860:intron | 45.0% |
| !! | AACCCAACCATGGTTTTTGG+TGG | - | chr7.1:18583661-18583680 | MS.gene013860:intron | 45.0% |
| !! | ATGTTGGGTTGGAGTGTTGT+TGG | + | chr7.1:18583314-18583333 | None:intergenic | 45.0% |
| !! | CCTAACCGGTTCAGTTTTCT+CGG | + | chr7.1:18583341-18583360 | None:intergenic | 45.0% |
| !! | TGTTGGGTTGGAGTGTTGTT+GGG | + | chr7.1:18583313-18583332 | None:intergenic | 45.0% |
| !!! | ATTTTATTTTATTTTTTATG+AGG | - | chr7.1:18584210-18584229 | MS.gene013860:CDS | 5.0% |
| AGATGGCTATGATGCAGCCT+CGG | - | chr7.1:18583587-18583606 | MS.gene013860:intron | 50.0% | |
| AGTGGTCAACAAGGCATGGA+TGG | - | chr7.1:18583745-18583764 | MS.gene013860:intron | 50.0% | |
| CACCATGCCACTGTTGAAGA+TGG | + | chr7.1:18583407-18583426 | None:intergenic | 50.0% | |
| CCATCGTTAACAACTTGCCG+AGG | + | chr7.1:18583607-18583626 | None:intergenic | 50.0% | |
| CCGAGAAAACTGAACCGGTT+AGG | - | chr7.1:18583338-18583357 | MS.gene013860:intron | 50.0% | |
| CCTCGGCAAGTTGTTAACGA+TGG | - | chr7.1:18583604-18583623 | MS.gene013860:intron | 50.0% | |
| GAAGGAACAGAAACTGCAGC+CGG | + | chr7.1:18584727-18584746 | None:intergenic | 50.0% | |
| GGAGGAACCACCAAAAACCA+TGG | + | chr7.1:18583671-18583690 | None:intergenic | 50.0% | |
| GGTTCAAACCAACCCAACCA+TGG | - | chr7.1:18583651-18583670 | MS.gene013860:intron | 50.0% | |
| GTCCATCTTCAACAGTGGCA+TGG | - | chr7.1:18583402-18583421 | MS.gene013860:intron | 50.0% | |
| TTCTCGGAACCATGTTGGGT+TGG | + | chr7.1:18583325-18583344 | None:intergenic | 50.0% | |
| ! | AGAGGAGGGCACAAAAGTGA+TGG | + | chr7.1:18583829-18583848 | None:intergenic | 50.0% |
| ! | CTGATTGTTGGTGCCCTCTT+TGG | - | chr7.1:18584861-18584880 | MS.gene013860:intron | 50.0% |
| !! | GGAGGTGCTAGTACTGTAAC+AGG | - | chr7.1:18585604-18585623 | MS.gene013860:intron | 50.0% |
| !! | GTTGGGTTGGAGTGTTGTTG+GGG | + | chr7.1:18583312-18583331 | None:intergenic | 50.0% |
| !! | TCTACTGGTTCCAAAACCGC+CGG | - | chr7.1:18583503-18583522 | MS.gene013860:intron | 50.0% |
| !! | TTGGGTTGGAGTGTTGTTGG+GGG | + | chr7.1:18583311-18583330 | None:intergenic | 50.0% |
| CTGAACCGGTTAGGTCAAGG+TGG | - | chr7.1:18583347-18583366 | MS.gene013860:intron | 55.0% | |
| GGTGTCCACCTTGACCTAAC+CGG | + | chr7.1:18583355-18583374 | None:intergenic | 55.0% | |
| TGTAGGAACTGGCACACCAG+AGG | + | chr7.1:18585728-18585747 | None:intergenic | 55.0% | |
| ! | GAGATCTAGACCGGCGGTTT+TGG | + | chr7.1:18583516-18583535 | None:intergenic | 55.0% |
| !! | TGGGTTGGAGTGTTGTTGGG+GGG | + | chr7.1:18583310-18583329 | None:intergenic | 55.0% |
| CAAGTGTGGCCTGCTGCATC+TGG | + | chr7.1:18583552-18583571 | None:intergenic | 60.0% | |
| CCTGCTGCATCTGGCGTTGT+CGG | + | chr7.1:18583543-18583562 | None:intergenic | 60.0% | |
| !! | GGGTTGGAGTGTTGTTGGGG+GGG | + | chr7.1:18583309-18583328 | None:intergenic | 60.0% |
| CCGACAACGCCAGATGCAGC+AGG | - | chr7.1:18583540-18583559 | MS.gene013860:intron | 65.0% | |
| GCTGCATCTGGCGTTGTCGG+CGG | + | chr7.1:18583540-18583559 | None:intergenic | 65.0% | |
| GTCGGCGGCGAGATCTAGAC+CGG | + | chr7.1:18583525-18583544 | None:intergenic | 65.0% | |
| GGCGGCGAGATCTAGACCGG+CGG | + | chr7.1:18583522-18583541 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 18583283 | 18586651 | 18583283 | ID=MS.gene013860 |
| chr7.1 | mRNA | 18583283 | 18586651 | 18583283 | ID=MS.gene013860.t1;Parent=MS.gene013860 |
| chr7.1 | exon | 18586060 | 18586651 | 18586060 | ID=MS.gene013860.t1.exon1;Parent=MS.gene013860.t1 |
| chr7.1 | CDS | 18586060 | 18586651 | 18586060 | ID=cds.MS.gene013860.t1;Parent=MS.gene013860.t1 |
| chr7.1 | exon | 18584133 | 18584335 | 18584133 | ID=MS.gene013860.t1.exon2;Parent=MS.gene013860.t1 |
| chr7.1 | CDS | 18584133 | 18584335 | 18584133 | ID=cds.MS.gene013860.t1;Parent=MS.gene013860.t1 |
| chr7.1 | exon | 18583283 | 18583306 | 18583283 | ID=MS.gene013860.t1.exon3;Parent=MS.gene013860.t1 |
| chr7.1 | CDS | 18583283 | 18583306 | 18583283 | ID=cds.MS.gene013860.t1;Parent=MS.gene013860.t1 |
| Gene Sequence |
| Protein sequence |
