AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene013961

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013961.t1 MTR_7g088890 97.396 768 17 2 1 768 1 765 0.0 1528
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013961.t1 AT2G40950 49.206 756 287 24 32 759 26 712 4.15e-172 512
MS.gene013961.t1 AT3G56660 43.519 540 229 14 231 759 137 611 7.87e-120 374
MS.gene013961.t1 AT3G10800 43.417 638 266 21 144 759 103 667 1.83e-117 369

Find 217 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGATAATCCATTCTATTA+TGG 0.219261 7.2:+19559369 MS.gene013961:CDS
GGTTTAGTGGATAATGTTTC+TGG 0.228446 7.2:+19559058 MS.gene013961:CDS
TGTTGACAGTTGTGGAATTT+TGG 0.245109 7.2:-19560365 None:intergenic
TCAGGTGCTTCTGTGGTTTC+CGG 0.251766 7.2:+19558077 MS.gene013961:CDS
ATCAGAGTCCTGGTGTTTCT+AGG 0.274337 7.2:+19558102 MS.gene013961:CDS
CCGAAAGACTCAAGTTGTTT+TGG 0.282431 7.2:+19559265 MS.gene013961:CDS
ATCGCCATCTCCTACCTCTT+TGG 0.292842 7.2:-19560535 None:intergenic
TTGGAGGGAAGTGTTGTTAA+AGG 0.298541 7.2:+19558383 MS.gene013961:CDS
AAAATACTGAAAATTCTTAC+AGG 0.307136 7.2:+19558219 MS.gene013961:CDS
CCTCTATTTCTTCCAACTTC+GGG 0.314759 7.2:-19559490 None:intergenic
GCACCAGGTGGTGGCGGTGG+TGG 0.314771 7.2:-19558758 None:intergenic
ACCCTCCCAGATCCACTTCC+TGG 0.322326 7.2:+19560414 MS.gene013961:CDS
TTGCCGGGCAGGTGGTCTTT+TGG 0.323779 7.2:-19560477 None:intergenic
GAATGGACCTGTTTCGTCTC+AGG 0.340862 7.2:+19558259 MS.gene013961:CDS
TCAAGGTTCTCAGGTTCCTT+TGG 0.340949 7.2:+19558859 MS.gene013961:CDS
TCATTCATATGACCATTTAC+AGG 0.346777 7.2:-19559139 None:intergenic
GCGGGTTTCAGAAGAAATAT+TGG 0.348033 7.2:-19560343 None:intergenic
CGGGTTCCAGGAAGTGGATC+TGG 0.348649 7.2:-19560420 None:intergenic
TTATCAATCACATGCGAAAT+CGG 0.348829 7.2:-19558044 None:intergenic
ATCCCTCTCCGGCGAATTCA+TGG 0.349100 7.2:-19558315 None:intergenic
GGGGCACCAGGTGGTGGCGG+TGG 0.353015 7.2:-19558761 None:intergenic
GCCAATGCGGAATTATCTTT+AGG 0.353133 7.2:-19559463 None:intergenic
GAGAAAGTGCACAGCTTTCA+AGG 0.360135 7.2:+19558591 MS.gene013961:CDS
GGGAAGATTTGGCCTGTAAA+TGG 0.365839 7.2:+19559127 MS.gene013961:CDS
CTAGTTATGTTAGTGATAGA+TGG 0.373574 7.2:+19559086 MS.gene013961:CDS
TCAGACGACGGTAGTTGTTC+AGG 0.374115 7.2:-19557825 None:intergenic
GAAGGTTTGGTATTTCTGAT+AGG 0.374820 7.2:+19559197 MS.gene013961:CDS
GTCATGGTGGAGGGAAGATT+TGG 0.376373 7.2:+19559116 MS.gene013961:CDS
AGTTGTTCAGGTGGTTGTTC+CGG 0.376510 7.2:-19557813 None:intergenic
TCGCCATCTCCTACCTCTTT+GGG 0.378134 7.2:-19560534 None:intergenic
TGTGAAAGAGGATGTGAAAT+TGG 0.378389 7.2:+19558364 MS.gene013961:CDS
TCTTCCCCGTGTTTCTCCTT+TGG 0.379638 7.2:+19560647 MS.gene013961:CDS
CCTGTTTCGTCTCAGGGATC+GGG 0.383787 7.2:+19558266 MS.gene013961:CDS
TACATCGGGGCACCAGGTGG+TGG 0.394410 7.2:-19558767 None:intergenic
TTTGATGTTTCTCCAACTCC+TGG 0.394532 7.2:+19560294 MS.gene013961:CDS
ATTGATAATTCGCCGGAATC+AGG 0.396736 7.2:+19558059 MS.gene013961:CDS
CTGGATGCAGTGGGTACATC+GGG 0.399640 7.2:-19558781 None:intergenic
GTTATGTTCAGACGGGTTCC+AGG 0.403148 7.2:-19560432 None:intergenic
GGATCGGGGAACGGTGGATC+GGG 0.403786 7.2:+19558281 MS.gene013961:CDS
GACCATAGATGATTTATTGC+CGG 0.403947 7.2:-19560493 None:intergenic
TAAGGCATAGGTGCCATTCC+TGG 0.404229 7.2:-19558800 None:intergenic
ACCACAGAAGCACCTGATTC+CGG 0.404825 7.2:-19558071 None:intergenic
CCTTGAGGTTTAACAACATA+AGG 0.407763 7.2:-19558842 None:intergenic
CCAAAACAACTTGAGTCTTT+CGG 0.407967 7.2:-19559265 None:intergenic
GTTGCTAGTATTAGTTTGTT+GGG 0.408388 7.2:+19558974 MS.gene013961:CDS
TTGCTTCTTTGTATGTTCCT+AGG 0.410557 7.2:+19559317 MS.gene013961:CDS
AATGGTCATATGAATGAATC+TGG 0.410603 7.2:+19559145 MS.gene013961:CDS
AGTTGCTAGTATTAGTTTGT+TGG 0.413297 7.2:+19558973 MS.gene013961:CDS
TCTGGAAGGAATGGGGAAGC+GGG 0.417527 7.2:+19559163 MS.gene013961:CDS
ACCTGTTTCGTCTCAGGGAT+CGG 0.420552 7.2:+19558265 MS.gene013961:CDS
TGGTTTCGTGAAGGAATTGC+AGG 0.423367 7.2:+19559631 MS.gene013961:CDS
CCTGCTCTTGTTGACAGTTG+TGG 0.423616 7.2:-19560373 None:intergenic
GCTGAACAAAGAAGGGCTAT+TGG 0.427676 7.2:+19559541 MS.gene013961:CDS
GCCCGGCAATAAATCATCTA+TGG 0.427714 7.2:+19560491 MS.gene013961:CDS
TTTCAACAACAAGCTCAATC+TGG 0.433911 7.2:+19558512 MS.gene013961:CDS
AAGAAGGAGAAGAGTGAAAC+TGG 0.434906 7.2:+19559430 MS.gene013961:CDS
CATCAGTCTCCGACGGGATA+GGG 0.439678 7.2:-19557983 None:intergenic
ACCTCTATTTCTTCCAACTT+CGG 0.441464 7.2:-19559491 None:intergenic
TGTTAAACCTCAAGGTTCTC+AGG 0.442420 7.2:+19558850 MS.gene013961:CDS
ATGAATGAATCTGGAAGGAA+TGG 0.448209 7.2:+19559154 MS.gene013961:CDS
GAAGTGGATCTGGGAGGGTG+TGG 0.450659 7.2:-19560410 None:intergenic
ATCGGGGCACCAGGTGGTGG+CGG 0.453045 7.2:-19558764 None:intergenic
CTGAAAATTCTTACAGGGAA+AGG 0.454977 7.2:+19558225 MS.gene013961:CDS
TCATCAGTCTCCGACGGGAT+AGG 0.456052 7.2:-19557984 None:intergenic
TTCAGACGGGTTCCAGGAAG+TGG 0.456378 7.2:-19560426 None:intergenic
GGGATCGGGGAACGGTGGAT+CGG 0.458209 7.2:+19558280 MS.gene013961:CDS
ACCATAGATGATTTATTGCC+GGG 0.458374 7.2:-19560492 None:intergenic
AGTGGGTACATCGGGGCACC+AGG 0.458535 7.2:-19558773 None:intergenic
CCCGATCCCTGAGACGAAAC+AGG 0.460311 7.2:-19558266 None:intergenic
GTCAACATCCGAATGTGTAC+AGG 0.460462 7.2:+19559512 MS.gene013961:CDS
TGAGGCTTCAACCTCGGAAT+CGG 0.460632 7.2:-19558884 None:intergenic
CAAAGAAGGGCTATTGGCTC+TGG 0.463181 7.2:+19559547 MS.gene013961:CDS
GAAGCCGCAGCAGTTGGCTG+AGG 0.464585 7.2:-19558902 None:intergenic
AGGATGAGAAGAGGAAAGCA+AGG 0.465492 7.2:+19558555 MS.gene013961:CDS
GTAGGAGATGGCGATGTTGA+TGG 0.465751 7.2:+19560543 MS.gene013961:CDS
CGACCTCCTACTACATTTCG+AGG 0.468018 7.2:-19558459 None:intergenic
ATATTGGCCACTGCTGCTGC+TGG 0.469399 7.2:-19560327 None:intergenic
AGACTTCATATGGTCCTTCA+AGG 0.470842 7.2:-19559581 None:intergenic
TATGAAAGAGGGAGGATACT+AGG 0.474635 7.2:+19559226 MS.gene013961:CDS
CCTTATGTTGTTAAACCTCA+AGG 0.476907 7.2:+19558842 MS.gene013961:CDS
GATCCCGATCTCGATTTCCT+TGG 0.479477 7.2:+19557924 MS.gene013961:CDS
GCATTGGCTATTCCCGAAGT+TGG 0.481462 7.2:+19559478 MS.gene013961:CDS
TGAAAATTCTTACAGGGAAA+GGG 0.481829 7.2:+19558226 MS.gene013961:CDS
GGAACTATTGCTCCAGGAGT+TGG 0.484476 7.2:-19560306 None:intergenic
CATGGCATCTCAAGATGCTC+AGG 0.484756 7.2:+19559405 MS.gene013961:CDS
GGGTTTCCGAATGGAAGGTT+TGG 0.486157 7.2:+19559184 MS.gene013961:CDS
GCAGGTCCAATGCTAAGTTC+TGG 0.487433 7.2:+19560249 MS.gene013961:intron
AATGGACCTGTTTCGTCTCA+GGG 0.487929 7.2:+19558260 MS.gene013961:CDS
TCTCACTAGCCATAATAGAA+TGG 0.490180 7.2:-19559378 None:intergenic
TGGTTCAACTAAAACCTTGA+AGG 0.490584 7.2:+19559567 MS.gene013961:CDS
CTCTTCGAAGCCGCAGCAGT+TGG 0.491101 7.2:-19558908 None:intergenic
ATCTGGAAGGAATGGGGAAG+CGG 0.494855 7.2:+19559162 MS.gene013961:CDS
TGAATGAATCTGGAAGGAAT+GGG 0.497476 7.2:+19559155 MS.gene013961:CDS
CAGTTGCAGAAGACTTCATA+TGG 0.499404 7.2:-19559591 None:intergenic
TCGTCTCAGGGATCGGGGAA+CGG 0.500301 7.2:+19558272 MS.gene013961:CDS
GATAGGAATAATTATGAAAG+AGG 0.503581 7.2:+19559214 MS.gene013961:CDS
GAAATACCAAACCTTCCATT+CGG 0.504063 7.2:-19559190 None:intergenic
AGAGGAAAGCAAGGTTGATG+AGG 0.504690 7.2:+19558564 MS.gene013961:CDS
GTGGATCTGGGAGGGTGTGG+AGG 0.505432 7.2:-19560407 None:intergenic
CTGAGCATCTTGAGATGCCA+TGG 0.508247 7.2:-19559404 None:intergenic
TAGATGATTTATTGCCGGGC+AGG 0.510261 7.2:-19560488 None:intergenic
TTGCCAAAAGACCACCTGCC+CGG 0.510449 7.2:+19560474 MS.gene013961:CDS
GGGTTTCTGCTGAACAAAGA+AGG 0.511157 7.2:+19559533 MS.gene013961:CDS
TCAGGTGGTTGTTCCGGCGG+TGG 0.514009 7.2:-19557807 None:intergenic
GCATTATGTGGAGGAGCTTG+AGG 0.515226 7.2:+19558625 MS.gene013961:CDS
GCTGCTGGAACTATTGCTCC+AGG 0.515460 7.2:-19560312 None:intergenic
TCAAGATGCTCAGGGGAAGA+AGG 0.516725 7.2:+19559414 MS.gene013961:CDS
TGAAAATGAAAATGTGAAAG+AGG 0.516780 7.2:+19558352 MS.gene013961:CDS
GCACAGGGCATCCATGCATA+AGG 0.516883 7.2:-19558818 None:intergenic
CCCGAAGTTGGAAGAAATAG+AGG 0.519264 7.2:+19559490 MS.gene013961:CDS
TCCTAAAGATAATTCCGCAT+TGG 0.522258 7.2:+19559462 MS.gene013961:CDS
GCAGAAACCCTGTACACATT+CGG 0.522493 7.2:-19559520 None:intergenic
TCCAGGAAGTGGATCTGGGA+GGG 0.523504 7.2:-19560415 None:intergenic
TTCTTCAGTTATGTTCAGAC+GGG 0.524750 7.2:-19560439 None:intergenic
TTTGAATTTGGATTCAGTTG+CGG 0.525278 7.2:+19558127 MS.gene013961:CDS
TGGCTCCGAAGTCGCTCTCT+CGG 0.526704 7.2:+19560571 MS.gene013961:CDS
TAGTGGATAATGTTTCTGGT+AGG 0.527201 7.2:+19559062 MS.gene013961:CDS
GGGTTCCAGGAAGTGGATCT+GGG 0.528707 7.2:-19560419 None:intergenic
GTGCACAGCTTTCAAGGCAG+AGG 0.529811 7.2:+19558597 MS.gene013961:CDS
AAGCGGGGTTTCCGAATGGA+AGG 0.530530 7.2:+19559179 MS.gene013961:CDS
TTTAACAACATAAGGAGCAC+AGG 0.531090 7.2:-19558834 None:intergenic
ATCGCCAAGGAAATCGAGAT+CGG 0.531775 7.2:-19557928 None:intergenic
TTCACCAGCTTATCATTCCT+AGG 0.531777 7.2:-19559334 None:intergenic
CCTGGATGCAGTGGGTACAT+CGG 0.531829 7.2:-19558782 None:intergenic
AGCCATGAATTCGCCGGAGA+GGG 0.532866 7.2:+19558313 MS.gene013961:CDS
TCGCCAAGGAAATCGAGATC+GGG 0.535175 7.2:-19557927 None:intergenic
TAGTAAGATTACTTATGTAA+TGG 0.536158 7.2:+19558688 MS.gene013961:CDS
CCGATGTACCCACTGCATCC+AGG 0.537413 7.2:+19558782 MS.gene013961:CDS
AAAATCCGAGAGAGCGACTT+CGG 0.540450 7.2:-19560576 None:intergenic
TTGAAGAAAGAGTCAAATGA+AGG 0.540485 7.2:-19557894 None:intergenic
GTTCTTCAGTTATGTTCAGA+CGG 0.540851 7.2:-19560440 None:intergenic
TGTCCACCACCGCCACCACC+TGG 0.541246 7.2:+19558755 MS.gene013961:CDS
ATCGAACCTCGAAATGTAGT+AGG 0.541329 7.2:+19558453 MS.gene013961:CDS
GTTGGCTGAGGCTTCAACCT+CGG 0.543196 7.2:-19558890 None:intergenic
TTGTTCCGGCGGTGGTTGAA+CGG 0.544558 7.2:-19557799 None:intergenic
GATAAGCTGGTGAAGATCGA+TGG 0.548077 7.2:+19559343 MS.gene013961:CDS
TTCCTTTGGTTCCGATTCCG+AGG 0.552849 7.2:+19558873 MS.gene013961:CDS
CCACAACTGTCAACAAGAGC+AGG 0.555668 7.2:+19560373 MS.gene013961:CDS
GCCGGAATCAGGTGCTTCTG+TGG 0.555970 7.2:+19558070 MS.gene013961:CDS
TAGTAGGAGGTCGTTGTCGA+TGG 0.558283 7.2:+19558469 MS.gene013961:CDS
GGGGAAGCGGGGTTTCCGAA+TGG 0.561151 7.2:+19559175 MS.gene013961:CDS
GTCGTTGTCGATGGAGAGGA+CGG 0.563859 7.2:+19558478 MS.gene013961:CDS
ATAGGAATAATTATGAAAGA+GGG 0.566000 7.2:+19559215 MS.gene013961:CDS
TTAAAGGCTGTGATCTGAAG+AGG 0.569436 7.2:+19558399 MS.gene013961:CDS
ATGATTTATTGCCGGGCAGG+TGG 0.572214 7.2:-19560485 None:intergenic
GGGTACATCGGGGCACCAGG+TGG 0.576517 7.2:-19558770 None:intergenic
AATAGTTCCAGCAGCAGCAG+TGG 0.577132 7.2:+19560320 MS.gene013961:CDS
TCTCAGGGATCGGGGAACGG+TGG 0.577492 7.2:+19558275 MS.gene013961:CDS
AAAGATGAAACATCCCTCTC+CGG 0.578091 7.2:-19558326 None:intergenic
CACATGCCAGAACTTAGCAT+TGG 0.578294 7.2:-19560255 None:intergenic
CTGTTTCGTCTCAGGGATCG+GGG 0.578354 7.2:+19558267 MS.gene013961:CDS
TTGAAGATGAGGATGAGAAG+AGG 0.578374 7.2:+19558546 MS.gene013961:CDS
ATGAAGTCTTCTGCAACTGA+TGG 0.579273 7.2:+19559595 MS.gene013961:CDS
GTTTCCGGTGATCAGAGTCC+TGG 0.579472 7.2:+19558092 MS.gene013961:CDS
GCAGAGGAAGAAGCATTATG+TGG 0.581328 7.2:+19558613 MS.gene013961:CDS
GTCATATGAATGAATCTGGA+AGG 0.581451 7.2:+19559149 MS.gene013961:CDS
CATGATGCATGCAACGCTGA+TGG 0.582211 7.2:+19558017 MS.gene013961:CDS
GGAATAATTATGAAAGAGGG+AGG 0.585137 7.2:+19559218 MS.gene013961:CDS
TGTTCCTAGGAATGATAAGC+TGG 0.588162 7.2:+19559330 MS.gene013961:CDS
GCATGTGATTGATAATTCGC+CGG 0.589032 7.2:+19558052 MS.gene013961:CDS
AGATAATCATCAGTCTCCGA+CGG 0.590359 7.2:-19557990 None:intergenic
GGTTTCTGCTGAACAAAGAA+GGG 0.591609 7.2:+19559534 MS.gene013961:CDS
GAGTGAGAGTAAGAAGAGTG+AGG 0.592637 7.2:+19558937 MS.gene013961:CDS
GATAATCATCAGTCTCCGAC+GGG 0.596708 7.2:-19557989 None:intergenic
CTTGTTGATCCCAAAGAGGT+AGG 0.597487 7.2:+19560525 MS.gene013961:CDS
TGTTCAGGTGGTTGTTCCGG+CGG 0.604479 7.2:-19557810 None:intergenic
AACCTCGGAATCGGAACCAA+AGG 0.604998 7.2:-19558875 None:intergenic
GAAAGGGAAGAGTCTTCGAA+TGG 0.607622 7.2:+19558242 MS.gene013961:CDS
GTACCCACTGCATCCAGGAA+TGG 0.607855 7.2:+19558787 MS.gene013961:CDS
TGGCGATGTTGATGGCATGA+TGG 0.608428 7.2:+19560551 MS.gene013961:CDS
GAAGCCTCAGCCAACTGCTG+CGG 0.610900 7.2:+19558898 MS.gene013961:CDS
ATGCAACAGTGGTTTCGTGA+AGG 0.612420 7.2:+19559622 MS.gene013961:CDS
GAATGAATCTGGAAGGAATG+GGG 0.612489 7.2:+19559156 MS.gene013961:CDS
GATCCCAAAGAGGTAGGAGA+TGG 0.616124 7.2:+19560531 MS.gene013961:CDS
CTGGAAGGAATGGGGAAGCG+GGG 0.617811 7.2:+19559164 MS.gene013961:CDS
GAGGAAGAAGCATTATGTGG+AGG 0.618127 7.2:+19558616 MS.gene013961:CDS
CTGTCACCAAAGGAGAAACA+CGG 0.620177 7.2:-19560653 None:intergenic
AACACCAGGACTCTGATCAC+CGG 0.620315 7.2:-19558096 None:intergenic
GTATGAAGCCATGAATTCGC+CGG 0.621033 7.2:+19558307 MS.gene013961:CDS
TGTCACCAAAGGAGAAACAC+GGG 0.626669 7.2:-19560652 None:intergenic
TGGCTGAGAATGCTACACTT+AGG 0.630909 7.2:+19558708 MS.gene013961:CDS
AAATACTGAAAATTCTTACA+GGG 0.633557 7.2:+19558220 MS.gene013961:CDS
GACGACGGTAGTTGTTCAGG+TGG 0.633995 7.2:-19557822 None:intergenic
TGGCACCTATGCCTTATGCA+TGG 0.634382 7.2:+19558807 MS.gene013961:CDS
GAACCTCGAAATGTAGTAGG+AGG 0.634877 7.2:+19558456 MS.gene013961:CDS
TGTGCTTGTTGATCCCAAAG+AGG 0.635244 7.2:+19560521 MS.gene013961:CDS
CCAAACTTAAAATCTACCAA+AGG 0.635471 7.2:-19559034 None:intergenic
GTGCCATTCCTGGATGCAGT+GGG 0.636238 7.2:-19558790 None:intergenic
CAAACATAAGCTGTCACCAA+AGG 0.638493 7.2:-19560663 None:intergenic
TTCCAGGAAGTGGATCTGGG+AGG 0.639667 7.2:-19560416 None:intergenic
TCTCACCGTTCAACCACCGC+CGG 0.639884 7.2:+19557794 MS.gene013961:CDS
TCAACATCCGAATGTGTACA+GGG 0.639982 7.2:+19559513 MS.gene013961:CDS
GGTGCCATTCCTGGATGCAG+TGG 0.642540 7.2:-19558791 None:intergenic
GAAAGAGGATGTGAAATTGG+AGG 0.644180 7.2:+19558367 MS.gene013961:CDS
GATCTCGATTTCAACGACTA+CGG 0.647229 7.2:+19557846 MS.gene013961:CDS
ATGGCATCTCAAGATGCTCA+GGG 0.649184 7.2:+19559406 MS.gene013961:CDS
GGAGGTCGTTGTCGATGGAG+AGG 0.650672 7.2:+19558474 MS.gene013961:CDS
CTCGATTTCAACGACTACGG+TGG 0.651643 7.2:+19557849 MS.gene013961:CDS
TATGGCTAGTGAGAAAGCCA+TGG 0.652273 7.2:+19559387 MS.gene013961:CDS
ACACTTAGGCAACAATTGAG+TGG 0.653994 7.2:+19558722 MS.gene013961:CDS
GGCATCCATGCATAAGGCAT+AGG 0.660606 7.2:-19558812 None:intergenic
AAGCCATGAATTCGCCGGAG+AGG 0.660751 7.2:+19558312 MS.gene013961:CDS
AAAGAGGATGTGAAATTGGA+GGG 0.661470 7.2:+19558368 MS.gene013961:CDS
ACGTGATTTCGAAATCGCCA+AGG 0.661829 7.2:-19557941 None:intergenic
AGAGTCAAATGAAGGAAGAG+CGG 0.665532 7.2:-19557886 None:intergenic
CTGATGGTAAAATGCAACAG+TGG 0.665578 7.2:+19559611 MS.gene013961:CDS
AGATAATCTCCCTATCCCGT+CGG 0.672222 7.2:+19557974 MS.gene013961:CDS
TTAACAACATAAGGAGCACA+GGG 0.677664 7.2:-19558833 None:intergenic
AAAGGAACCTGAGAACCTTG+AGG 0.689564 7.2:-19558857 None:intergenic
ACATACAAAGAAGCAAGCAG+TGG 0.691640 7.2:-19559310 None:intergenic
AAGTATGTGACTTACTCATG+TGG 0.694107 7.2:+19560624 MS.gene013961:CDS
CTTAGGCAACAATTGAGTGG+TGG 0.698725 7.2:+19558725 MS.gene013961:CDS
AACTTCGGGAATAGCCAATG+CGG 0.702448 7.2:-19559476 None:intergenic
TGGCATCTCAAGATGCTCAG+GGG 0.720143 7.2:+19559407 MS.gene013961:CDS
TGGATGCAGTGGGTACATCG+GGG 0.722347 7.2:-19558780 None:intergenic
GTCACCAAAGGAGAAACACG+GGG 0.765380 7.2:-19560651 None:intergenic
TTGAAATCGAGATCAGACGA+CGG 0.799648 7.2:-19557837 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTGGTAATTAAAAATATT+TGG + chr7.2:19559920-19559939 MS.gene013961:intron 15.0%
!! AAAATACTGAAAATTCTTAC+AGG + chr7.2:19558219-19558238 MS.gene013961:CDS 20.0%
!! AAATACTGAAAATTCTTACA+GGG + chr7.2:19558220-19558239 MS.gene013961:CDS 20.0%
!! ATAGGAATAATTATGAAAGA+GGG + chr7.2:19559215-19559234 MS.gene013961:CDS 20.0%
!! TAGTAAGATTACTTATGTAA+TGG + chr7.2:19558688-19558707 MS.gene013961:CDS 20.0%
! GATAGGAATAATTATGAAAG+AGG + chr7.2:19559214-19559233 MS.gene013961:CDS 25.0%
! TGAAAATGAAAATGTGAAAG+AGG + chr7.2:19558352-19558371 MS.gene013961:CDS 25.0%
! TTGGATGATGATTGTAATTA+TGG - chr7.2:19560095-19560114 None:intergenic 25.0%
!! ACTAATCACATTTTTGTGAT+TGG + chr7.2:19559766-19559785 MS.gene013961:intron 25.0%
!! CTAATCACATTTTTGTGATT+GGG + chr7.2:19559767-19559786 MS.gene013961:intron 25.0%
!! CTTGATAATCCATTCTATTA+TGG + chr7.2:19559369-19559388 MS.gene013961:CDS 25.0%
!! TTTTTCTGTATCATGCTTTT+TGG + chr7.2:19559001-19559020 MS.gene013961:CDS 25.0%
!!! ATTTGATTTGATTGCACTTT+TGG + chr7.2:19560034-19560053 MS.gene013961:intron 25.0%
!!! TGTTTCTAGGTTTTTGAATT+TGG + chr7.2:19558115-19558134 MS.gene013961:CDS 25.0%
AATGGTCATATGAATGAATC+TGG + chr7.2:19559145-19559164 MS.gene013961:CDS 30.0%
CATCTATAGCGTAAAATTAG+AGG - chr7.2:19559681-19559700 None:intergenic 30.0%
CCAAACTTAAAATCTACCAA+AGG - chr7.2:19559037-19559056 None:intergenic 30.0%
CTAGTTATGTTAGTGATAGA+TGG + chr7.2:19559086-19559105 MS.gene013961:CDS 30.0%
CTCAAACTATATCACTAACT+TGG + chr7.2:19559996-19560015 MS.gene013961:intron 30.0%
TAGAGGACATGCATAATTAA+AGG - chr7.2:19559664-19559683 None:intergenic 30.0%
TCATTCATATGACCATTTAC+AGG - chr7.2:19559142-19559161 None:intergenic 30.0%
TGAAAATTCTTACAGGGAAA+GGG + chr7.2:19558226-19558245 MS.gene013961:CDS 30.0%
TTAATTACCAAACAGCAAGA+TGG - chr7.2:19559913-19559932 None:intergenic 30.0%
TTATCAATCACATGCGAAAT+CGG - chr7.2:19558047-19558066 None:intergenic 30.0%
TTGAAGAAAGAGTCAAATGA+AGG - chr7.2:19557897-19557916 None:intergenic 30.0%
TTTGAATTTGGATTCAGTTG+CGG + chr7.2:19558127-19558146 MS.gene013961:CDS 30.0%
! AGGTTCAGTGTTTTCAATTT+TGG + chr7.2:19559803-19559822 MS.gene013961:intron 30.0%
! ATTTTACGCTATAGATGGTT+TGG + chr7.2:19559684-19559703 MS.gene013961:intron 30.0%
! CTCTAATTTTACGCTATAGA+TGG + chr7.2:19559679-19559698 MS.gene013961:intron 30.0%
! GGTTCAGTGTTTTCAATTTT+GGG + chr7.2:19559804-19559823 MS.gene013961:intron 30.0%
! GTATTTTCATTTTCAGTCTC+CGG - chr7.2:19558206-19558225 None:intergenic 30.0%
! GTGGTGATTATATCATGTTT+TGG + chr7.2:19559727-19559746 MS.gene013961:intron 30.0%
! GTTCAGTGTTTTCAATTTTG+GGG + chr7.2:19559805-19559824 MS.gene013961:intron 30.0%
! TTTTGATGGAATTGAAGATG+AGG + chr7.2:19558535-19558554 MS.gene013961:CDS 30.0%
!! AGTTGCTAGTATTAGTTTGT+TGG + chr7.2:19558973-19558992 MS.gene013961:CDS 30.0%
!! GTTAGTGATAGATGGTTTTA+TGG + chr7.2:19559094-19559113 MS.gene013961:CDS 30.0%
!! GTTGCTAGTATTAGTTTGTT+GGG + chr7.2:19558974-19558993 MS.gene013961:CDS 30.0%
!!! CCTTTGGTAGATTTTAAGTT+TGG + chr7.2:19559034-19559053 MS.gene013961:CDS 30.0%
!!! TTGGTAGATTTTAAGTTTGG+AGG + chr7.2:19559037-19559056 MS.gene013961:CDS 30.0%
!!! TTTTAAGTTTGGAGGTTTAG+TGG + chr7.2:19559045-19559064 MS.gene013961:CDS 30.0%
AAAGAGGATGTGAAATTGGA+GGG + chr7.2:19558368-19558387 MS.gene013961:CDS 35.0%
AAGTATGTGACTTACTCATG+TGG + chr7.2:19560624-19560643 MS.gene013961:CDS 35.0%
ACCATAGATGATTTATTGCC+GGG - chr7.2:19560495-19560514 None:intergenic 35.0%
AGGAATGATACATTCTCTTG+TGG + chr7.2:19559708-19559727 MS.gene013961:intron 35.0%
ATCATTGGACGAGAAAATTC+AGG - chr7.2:19560229-19560248 None:intergenic 35.0%
ATGAATGAATCTGGAAGGAA+TGG + chr7.2:19559154-19559173 MS.gene013961:CDS 35.0%
CCAAAACAACTTGAGTCTTT+CGG - chr7.2:19559268-19559287 None:intergenic 35.0%
CCTTATGTTGTTAAACCTCA+AGG + chr7.2:19558842-19558861 MS.gene013961:CDS 35.0%
CCTTGAGGTTTAACAACATA+AGG - chr7.2:19558845-19558864 None:intergenic 35.0%
CTGAAAATTCTTACAGGGAA+AGG + chr7.2:19558225-19558244 MS.gene013961:CDS 35.0%
GAAATACCAAACCTTCCATT+CGG - chr7.2:19559193-19559212 None:intergenic 35.0%
GACCATAGATGATTTATTGC+CGG - chr7.2:19560496-19560515 None:intergenic 35.0%
GGAATAATTATGAAAGAGGG+AGG + chr7.2:19559218-19559237 MS.gene013961:CDS 35.0%
GTCATATGAATGAATCTGGA+AGG + chr7.2:19559149-19559168 MS.gene013961:CDS 35.0%
GTTCTTCAGTTATGTTCAGA+CGG - chr7.2:19560443-19560462 None:intergenic 35.0%
TCCTAAAGATAATTCCGCAT+TGG + chr7.2:19559462-19559481 MS.gene013961:CDS 35.0%
TCTCACTAGCCATAATAGAA+TGG - chr7.2:19559381-19559400 None:intergenic 35.0%
TGAATGAATCTGGAAGGAAT+GGG + chr7.2:19559155-19559174 MS.gene013961:CDS 35.0%
TGGTTCAACTAAAACCTTGA+AGG + chr7.2:19559567-19559586 MS.gene013961:CDS 35.0%
TGTGAAAGAGGATGTGAAAT+TGG + chr7.2:19558364-19558383 MS.gene013961:CDS 35.0%
TTCAAAAACCTAGAAACACC+AGG - chr7.2:19558113-19558132 None:intergenic 35.0%
TTCTTCAGTTATGTTCAGAC+GGG - chr7.2:19560442-19560461 None:intergenic 35.0%
TTGCTTCTTTGTATGTTCCT+AGG + chr7.2:19559317-19559336 MS.gene013961:CDS 35.0%
TTTCAACAACAAGCTCAATC+TGG + chr7.2:19558512-19558531 MS.gene013961:CDS 35.0%
! ACCTCTATTTCTTCCAACTT+CGG - chr7.2:19559494-19559513 None:intergenic 35.0%
! GAAGGTTTGGTATTTCTGAT+AGG + chr7.2:19559197-19559216 MS.gene013961:CDS 35.0%
! GATTGGGTAGCACATTTTAT+AGG + chr7.2:19559783-19559802 MS.gene013961:intron 35.0%
! GGTTTAGTGGATAATGTTTC+TGG + chr7.2:19559058-19559077 MS.gene013961:CDS 35.0%
! TAAGCTCACATGTTTTGTGT+TGG + chr7.2:19559858-19559877 MS.gene013961:intron 35.0%
! TATAGTTTGAGACTCTCTCA+AGG - chr7.2:19559987-19560006 None:intergenic 35.0%
! TGTTGACAGTTGTGGAATTT+TGG - chr7.2:19560368-19560387 None:intergenic 35.0%
! TTAACAACATAAGGAGCACA+GGG - chr7.2:19558836-19558855 None:intergenic 35.0%
! TTTAACAACATAAGGAGCAC+AGG - chr7.2:19558837-19558856 None:intergenic 35.0%
!! GTGCTTTAAAATAGTCAAGC+AGG - chr7.2:19560188-19560207 None:intergenic 35.0%
!! TAAGAAACCATCTTGCTGTT+TGG + chr7.2:19559903-19559922 MS.gene013961:intron 35.0%
!! TAGTGGATAATGTTTCTGGT+AGG + chr7.2:19559062-19559081 MS.gene013961:CDS 35.0%
!! TTCTGTATCATGCTTTTTGG+TGG + chr7.2:19559004-19559023 MS.gene013961:CDS 35.0%
!!! GATAGATGGTTTTATGGTCA+TGG + chr7.2:19559100-19559119 MS.gene013961:CDS 35.0%
AAAGATGAAACATCCCTCTC+CGG - chr7.2:19558329-19558348 None:intergenic 40.0%
AAGAAGGAGAAGAGTGAAAC+TGG + chr7.2:19559430-19559449 MS.gene013961:CDS 40.0%
AAGCAAAAGATGCTCAAGCA+TGG - chr7.2:19560135-19560154 None:intergenic 40.0%
ACACTTAGGCAACAATTGAG+TGG + chr7.2:19558722-19558741 MS.gene013961:CDS 40.0%
ACATACAAAGAAGCAAGCAG+TGG - chr7.2:19559313-19559332 None:intergenic 40.0%
AGACTTCATATGGTCCTTCA+AGG - chr7.2:19559584-19559603 None:intergenic 40.0%
AGAGTCAAATGAAGGAAGAG+CGG - chr7.2:19557889-19557908 None:intergenic 40.0%
AGATAATCATCAGTCTCCGA+CGG - chr7.2:19557993-19558012 None:intergenic 40.0%
ATCGAACCTCGAAATGTAGT+AGG + chr7.2:19558453-19558472 MS.gene013961:CDS 40.0%
ATGAAGTCTTCTGCAACTGA+TGG + chr7.2:19559595-19559614 MS.gene013961:CDS 40.0%
CAAACATAAGCTGTCACCAA+AGG - chr7.2:19560666-19560685 None:intergenic 40.0%
CAAGATGGTTTCTTAACGAC+GGG - chr7.2:19559898-19559917 None:intergenic 40.0%
CAGTTGCAGAAGACTTCATA+TGG - chr7.2:19559594-19559613 None:intergenic 40.0%
CTGATGGTAAAATGCAACAG+TGG + chr7.2:19559611-19559630 MS.gene013961:CDS 40.0%
GAAAGAGGATGTGAAATTGG+AGG + chr7.2:19558367-19558386 MS.gene013961:CDS 40.0%
GAATGAATCTGGAAGGAATG+GGG + chr7.2:19559156-19559175 MS.gene013961:CDS 40.0%
GATCTCGATTTCAACGACTA+CGG + chr7.2:19557846-19557865 MS.gene013961:CDS 40.0%
GCAAGATGGTTTCTTAACGA+CGG - chr7.2:19559899-19559918 None:intergenic 40.0%
GCCAATGCGGAATTATCTTT+AGG - chr7.2:19559466-19559485 None:intergenic 40.0%
GCGGGTTTCAGAAGAAATAT+TGG - chr7.2:19560346-19560365 None:intergenic 40.0%
GGTTTCTGCTGAACAAAGAA+GGG + chr7.2:19559534-19559553 MS.gene013961:CDS 40.0%
GTCAAGCAGGTAATTATGTC+AGG - chr7.2:19560175-19560194 None:intergenic 40.0%
TATGAAAGAGGGAGGATACT+AGG + chr7.2:19559226-19559245 MS.gene013961:CDS 40.0%
TCAACATCCGAATGTGTACA+GGG + chr7.2:19559513-19559532 MS.gene013961:CDS 40.0%
TGTTAAACCTCAAGGTTCTC+AGG + chr7.2:19558850-19558869 MS.gene013961:CDS 40.0%
TGTTCCTAGGAATGATAAGC+TGG + chr7.2:19559330-19559349 MS.gene013961:CDS 40.0%
TTAAAGGCTGTGATCTGAAG+AGG + chr7.2:19558399-19558418 MS.gene013961:CDS 40.0%
TTCACCAGCTTATCATTCCT+AGG - chr7.2:19559337-19559356 None:intergenic 40.0%
TTGAAATCGAGATCAGACGA+CGG - chr7.2:19557840-19557859 None:intergenic 40.0%
TTGAAGATGAGGATGAGAAG+AGG + chr7.2:19558546-19558565 MS.gene013961:CDS 40.0%
TTTGATGTTTCTCCAACTCC+TGG + chr7.2:19560294-19560313 MS.gene013961:CDS 40.0%
! ATTGATAATTCGCCGGAATC+AGG + chr7.2:19558059-19558078 MS.gene013961:CDS 40.0%
! ATTTTCTCGTCCAATGATGC+AGG + chr7.2:19560231-19560250 MS.gene013961:intron 40.0%
! CCTCTATTTCTTCCAACTTC+GGG - chr7.2:19559493-19559512 None:intergenic 40.0%
! GCATGTGATTGATAATTCGC+CGG + chr7.2:19558052-19558071 MS.gene013961:CDS 40.0%
! TGACAGTTGTGGAATTTTGG+CGG - chr7.2:19560365-19560384 None:intergenic 40.0%
!! CCGAAAGACTCAAGTTGTTT+TGG + chr7.2:19559265-19559284 MS.gene013961:CDS 40.0%
!! TACGCTATAGATGGTTTGGT+AGG + chr7.2:19559688-19559707 MS.gene013961:intron 40.0%
!! TTGGAGGGAAGTGTTGTTAA+AGG + chr7.2:19558383-19558402 MS.gene013961:CDS 40.0%
!!! AGATGGTTTTATGGTCATGG+TGG + chr7.2:19559103-19559122 MS.gene013961:CDS 40.0%
!!! CAAGCTCAATCTGGTTTTGA+TGG + chr7.2:19558521-19558540 MS.gene013961:CDS 40.0%
!!! GTTTTGTGTTGGTTGTTCCT+TGG + chr7.2:19559869-19559888 MS.gene013961:intron 40.0%
!!! TTTTGGTGGACTTGTTCCTT+TGG + chr7.2:19559018-19559037 MS.gene013961:CDS 40.0%
AAAATCCGAGAGAGCGACTT+CGG - chr7.2:19560579-19560598 None:intergenic 45.0%
AAAGGAACCTGAGAACCTTG+AGG - chr7.2:19558860-19558879 None:intergenic 45.0%
AACTTCGGGAATAGCCAATG+CGG - chr7.2:19559479-19559498 None:intergenic 45.0%
AATGGACCTGTTTCGTCTCA+GGG + chr7.2:19558260-19558279 MS.gene013961:CDS 45.0%
ACGTGATTTCGAAATCGCCA+AGG - chr7.2:19557944-19557963 None:intergenic 45.0%
AGATAATCTCCCTATCCCGT+CGG + chr7.2:19557974-19557993 MS.gene013961:CDS 45.0%
AGGATGAGAAGAGGAAAGCA+AGG + chr7.2:19558555-19558574 MS.gene013961:CDS 45.0%
AGTTGTTCAGGTGGTTGTTC+CGG - chr7.2:19557816-19557835 None:intergenic 45.0%
ATCAGAGTCCTGGTGTTTCT+AGG + chr7.2:19558102-19558121 MS.gene013961:CDS 45.0%
ATCGCCAAGGAAATCGAGAT+CGG - chr7.2:19557931-19557950 None:intergenic 45.0%
ATGCAACAGTGGTTTCGTGA+AGG + chr7.2:19559622-19559641 MS.gene013961:CDS 45.0%
ATGGCATCTCAAGATGCTCA+GGG + chr7.2:19559406-19559425 MS.gene013961:CDS 45.0%
CACATGCCAGAACTTAGCAT+TGG - chr7.2:19560258-19560277 None:intergenic 45.0%
CCCGAAGTTGGAAGAAATAG+AGG + chr7.2:19559490-19559509 MS.gene013961:CDS 45.0%
CTGTCACCAAAGGAGAAACA+CGG - chr7.2:19560656-19560675 None:intergenic 45.0%
CTTAGGCAACAATTGAGTGG+TGG + chr7.2:19558725-19558744 MS.gene013961:CDS 45.0%
CTTGTTGATCCCAAAGAGGT+AGG + chr7.2:19560525-19560544 MS.gene013961:CDS 45.0%
GAAAGGGAAGAGTCTTCGAA+TGG + chr7.2:19558242-19558261 MS.gene013961:CDS 45.0%
GAACCTCGAAATGTAGTAGG+AGG + chr7.2:19558456-19558475 MS.gene013961:CDS 45.0%
GAAGTCTATCTGACCAAGTG+TGG - chr7.2:19559957-19559976 None:intergenic 45.0%
GAGTGAGAGTAAGAAGAGTG+AGG + chr7.2:19558937-19558956 MS.gene013961:CDS 45.0%
GATAAGCTGGTGAAGATCGA+TGG + chr7.2:19559343-19559362 MS.gene013961:CDS 45.0%
GATAATCATCAGTCTCCGAC+GGG - chr7.2:19557992-19558011 None:intergenic 45.0%
GCAGAAACCCTGTACACATT+CGG - chr7.2:19559523-19559542 None:intergenic 45.0%
GCCCGGCAATAAATCATCTA+TGG + chr7.2:19560491-19560510 MS.gene013961:CDS 45.0%
GCTGAACAAAGAAGGGCTAT+TGG + chr7.2:19559541-19559560 MS.gene013961:CDS 45.0%
GGGAAGATTTGGCCTGTAAA+TGG + chr7.2:19559127-19559146 MS.gene013961:CDS 45.0%
GGGTTTCTGCTGAACAAAGA+AGG + chr7.2:19559533-19559552 MS.gene013961:CDS 45.0%
GTATGAAGCCATGAATTCGC+CGG + chr7.2:19558307-19558326 MS.gene013961:CDS 45.0%
GTCAACATCCGAATGTGTAC+AGG + chr7.2:19559512-19559531 MS.gene013961:CDS 45.0%
TAGATGATTTATTGCCGGGC+AGG - chr7.2:19560491-19560510 None:intergenic 45.0%
TATGGCTAGTGAGAAAGCCA+TGG + chr7.2:19559387-19559406 MS.gene013961:CDS 45.0%
TCAAGGTTCTCAGGTTCCTT+TGG + chr7.2:19558859-19558878 MS.gene013961:CDS 45.0%
TGGCTGAGAATGCTACACTT+AGG + chr7.2:19558708-19558727 MS.gene013961:CDS 45.0%
TGGTTTCGTGAAGGAATTGC+AGG + chr7.2:19559631-19559650 MS.gene013961:CDS 45.0%
TGTCACCAAAGGAGAAACAC+GGG - chr7.2:19560655-19560674 None:intergenic 45.0%
TTCTTAACGACGGGAAACCA+AGG - chr7.2:19559889-19559908 None:intergenic 45.0%
! GAGAAAGTGCACAGCTTTCA+AGG + chr7.2:19558591-19558610 MS.gene013961:CDS 45.0%
! TAGCATTGGACCTGCATCAT+TGG - chr7.2:19560244-19560263 None:intergenic 45.0%
! TCATTTTCAGTCTCCGGTGA+CGG - chr7.2:19558200-19558219 None:intergenic 45.0%
! TGTGCTTGTTGATCCCAAAG+AGG + chr7.2:19560521-19560540 MS.gene013961:CDS 45.0%
!! AGAGGAAAGCAAGGTTGATG+AGG + chr7.2:19558564-19558583 MS.gene013961:CDS 45.0%
!! GACAGTTGTGGAATTTTGGC+GGG - chr7.2:19560364-19560383 None:intergenic 45.0%
!! GAGGAAGAAGCATTATGTGG+AGG + chr7.2:19558616-19558635 MS.gene013961:CDS 45.0%
!! GCAGAGGAAGAAGCATTATG+TGG + chr7.2:19558613-19558632 MS.gene013961:CDS 45.0%
!! GGTTTTATGGTCATGGTGGA+GGG + chr7.2:19559107-19559126 MS.gene013961:CDS 45.0%
!!! AGTTTTGAGCTTTCCGTCAC+CGG + chr7.2:19558184-19558203 MS.gene013961:CDS 45.0%
!!! TGGTTTTATGGTCATGGTGG+AGG + chr7.2:19559106-19559125 MS.gene013961:CDS 45.0%
AACACCAGGACTCTGATCAC+CGG - chr7.2:19558099-19558118 None:intergenic 50.0%
AACCTCGGAATCGGAACCAA+AGG - chr7.2:19558878-19558897 None:intergenic 50.0%
AATAGTTCCAGCAGCAGCAG+TGG + chr7.2:19560320-19560339 MS.gene013961:CDS 50.0%
ACCTGTTTCGTCTCAGGGAT+CGG + chr7.2:19558265-19558284 MS.gene013961:CDS 50.0%
ATCGCCATCTCCTACCTCTT+TGG - chr7.2:19560538-19560557 None:intergenic 50.0%
ATCTGGAAGGAATGGGGAAG+CGG + chr7.2:19559162-19559181 MS.gene013961:CDS 50.0%
ATGATTTATTGCCGGGCAGG+TGG - chr7.2:19560488-19560507 None:intergenic 50.0%
CATGATGCATGCAACGCTGA+TGG + chr7.2:19558017-19558036 MS.gene013961:CDS 50.0%
CATGGCATCTCAAGATGCTC+AGG + chr7.2:19559405-19559424 MS.gene013961:CDS 50.0%
CCACAACTGTCAACAAGAGC+AGG + chr7.2:19560373-19560392 MS.gene013961:CDS 50.0%
CCTGCTCTTGTTGACAGTTG+TGG - chr7.2:19560376-19560395 None:intergenic 50.0%
CGACCTCCTACTACATTTCG+AGG - chr7.2:19558462-19558481 None:intergenic 50.0%
CTCGATTTCAACGACTACGG+TGG + chr7.2:19557849-19557868 MS.gene013961:CDS 50.0%
CTGAGCATCTTGAGATGCCA+TGG - chr7.2:19559407-19559426 None:intergenic 50.0%
GAATGGACCTGTTTCGTCTC+AGG + chr7.2:19558259-19558278 MS.gene013961:CDS 50.0%
GATCCCAAAGAGGTAGGAGA+TGG + chr7.2:19560531-19560550 MS.gene013961:CDS 50.0%
GATCCCGATCTCGATTTCCT+TGG + chr7.2:19557924-19557943 MS.gene013961:CDS 50.0%
GATGCTCAAGCATGGTTGAG+AGG - chr7.2:19560127-19560146 None:intergenic 50.0%
GCAGGTCCAATGCTAAGTTC+TGG + chr7.2:19560249-19560268 MS.gene013961:intron 50.0%
GCATTATGTGGAGGAGCTTG+AGG + chr7.2:19558625-19558644 MS.gene013961:CDS 50.0%
GGAACTATTGCTCCAGGAGT+TGG - chr7.2:19560309-19560328 None:intergenic 50.0%
GGCATCCATGCATAAGGCAT+AGG - chr7.2:19558815-19558834 None:intergenic 50.0%
GGGTTTCCGAATGGAAGGTT+TGG + chr7.2:19559184-19559203 MS.gene013961:CDS 50.0%
GGTCAGATGTCTTCCACACT+TGG + chr7.2:19559941-19559960 MS.gene013961:intron 50.0%
GGTTGAGAGGTGGACAACAT+TGG - chr7.2:19560114-19560133 None:intergenic 50.0%
GTAGGAGATGGCGATGTTGA+TGG + chr7.2:19560543-19560562 MS.gene013961:CDS 50.0%
GTCACCAAAGGAGAAACACG+GGG - chr7.2:19560654-19560673 None:intergenic 50.0%
TAGTAGGAGGTCGTTGTCGA+TGG + chr7.2:19558469-19558488 MS.gene013961:CDS 50.0%
TCAAGATGCTCAGGGGAAGA+AGG + chr7.2:19559414-19559433 MS.gene013961:CDS 50.0%
TCAGACGACGGTAGTTGTTC+AGG - chr7.2:19557828-19557847 None:intergenic 50.0%
TCAGGTGCTTCTGTGGTTTC+CGG + chr7.2:19558077-19558096 MS.gene013961:CDS 50.0%
TCGCCAAGGAAATCGAGATC+GGG - chr7.2:19557930-19557949 None:intergenic 50.0%
TCGCCATCTCCTACCTCTTT+GGG - chr7.2:19560537-19560556 None:intergenic 50.0%
TCTTCCCCGTGTTTCTCCTT+TGG + chr7.2:19560647-19560666 MS.gene013961:CDS 50.0%
TGAGGCTTCAACCTCGGAAT+CGG - chr7.2:19558887-19558906 None:intergenic 50.0%
TGGCACCTATGCCTTATGCA+TGG + chr7.2:19558807-19558826 MS.gene013961:CDS 50.0%
TGGCATCTCAAGATGCTCAG+GGG + chr7.2:19559407-19559426 MS.gene013961:CDS 50.0%
! GTCATGGTGGAGGGAAGATT+TGG + chr7.2:19559116-19559135 MS.gene013961:CDS 50.0%
! GTTATGTTCAGACGGGTTCC+AGG - chr7.2:19560435-19560454 None:intergenic 50.0%
! TTCCTTTGGTTCCGATTCCG+AGG + chr7.2:19558873-19558892 MS.gene013961:CDS 50.0%
!! ACCACAGAAGCACCTGATTC+CGG - chr7.2:19558074-19558093 None:intergenic 50.0%
!! CAAAGAAGGGCTATTGGCTC+TGG + chr7.2:19559547-19559566 MS.gene013961:CDS 50.0%
!! GCATTGGCTATTCCCGAAGT+TGG + chr7.2:19559478-19559497 MS.gene013961:CDS 50.0%
!! TAAGGCATAGGTGCCATTCC+TGG - chr7.2:19558803-19558822 None:intergenic 50.0%
!! TGGCGATGTTGATGGCATGA+TGG + chr7.2:19560551-19560570 MS.gene013961:CDS 50.0%
AAGCCATGAATTCGCCGGAG+AGG + chr7.2:19558312-19558331 MS.gene013961:CDS 55.0%
AAGCGGGGTTTCCGAATGGA+AGG + chr7.2:19559179-19559198 MS.gene013961:CDS 55.0%
AGCCATGAATTCGCCGGAGA+GGG + chr7.2:19558313-19558332 MS.gene013961:CDS 55.0%
ATATTGGCCACTGCTGCTGC+TGG - chr7.2:19560330-19560349 None:intergenic 55.0%
ATCCCTCTCCGGCGAATTCA+TGG - chr7.2:19558318-19558337 None:intergenic 55.0%
CATCAGTCTCCGACGGGATA+GGG - chr7.2:19557986-19558005 None:intergenic 55.0%
CCTGGATGCAGTGGGTACAT+CGG - chr7.2:19558785-19558804 None:intergenic 55.0%
CCTGTTTCGTCTCAGGGATC+GGG + chr7.2:19558266-19558285 MS.gene013961:CDS 55.0%
CTGGATGCAGTGGGTACATC+GGG - chr7.2:19558784-19558803 None:intergenic 55.0%
CTGTTTCGTCTCAGGGATCG+GGG + chr7.2:19558267-19558286 MS.gene013961:CDS 55.0%
GACGACGGTAGTTGTTCAGG+TGG - chr7.2:19557825-19557844 None:intergenic 55.0%
GCTCAAGCATGGTTGAGAGG+TGG - chr7.2:19560124-19560143 None:intergenic 55.0%
GCTGCTGGAACTATTGCTCC+AGG - chr7.2:19560315-19560334 None:intergenic 55.0%
GGGTTCCAGGAAGTGGATCT+GGG - chr7.2:19560422-19560441 None:intergenic 55.0%
GTACCCACTGCATCCAGGAA+TGG + chr7.2:19558787-19558806 MS.gene013961:CDS 55.0%
GTCGTTGTCGATGGAGAGGA+CGG + chr7.2:19558478-19558497 MS.gene013961:CDS 55.0%
GTGCACAGCTTTCAAGGCAG+AGG + chr7.2:19558597-19558616 MS.gene013961:CDS 55.0%
GTTGGCTGAGGCTTCAACCT+CGG - chr7.2:19558893-19558912 None:intergenic 55.0%
GTTTCCGGTGATCAGAGTCC+TGG + chr7.2:19558092-19558111 MS.gene013961:CDS 55.0%
TCATCAGTCTCCGACGGGAT+AGG - chr7.2:19557987-19558006 None:intergenic 55.0%
TCCAGGAAGTGGATCTGGGA+GGG - chr7.2:19560418-19560437 None:intergenic 55.0%
TCTGGAAGGAATGGGGAAGC+GGG + chr7.2:19559163-19559182 MS.gene013961:CDS 55.0%
TGGATGCAGTGGGTACATCG+GGG - chr7.2:19558783-19558802 None:intergenic 55.0%
TGTTCAGGTGGTTGTTCCGG+CGG - chr7.2:19557813-19557832 None:intergenic 55.0%
TTCCAGGAAGTGGATCTGGG+AGG - chr7.2:19560419-19560438 None:intergenic 55.0%
TTGCCAAAAGACCACCTGCC+CGG + chr7.2:19560474-19560493 MS.gene013961:CDS 55.0%
TTGTTCCGGCGGTGGTTGAA+CGG - chr7.2:19557802-19557821 None:intergenic 55.0%
! GCACAGGGCATCCATGCATA+AGG - chr7.2:19558821-19558840 None:intergenic 55.0%
! GTCGCTCTCTCGGATTTTCG+TGG + chr7.2:19560581-19560600 MS.gene013961:CDS 55.0%
! GTGCCATTCCTGGATGCAGT+GGG - chr7.2:19558793-19558812 None:intergenic 55.0%
! TTCAGACGGGTTCCAGGAAG+TGG - chr7.2:19560429-19560448 None:intergenic 55.0%
ACCCTCCCAGATCCACTTCC+TGG + chr7.2:19560414-19560433 MS.gene013961:CDS 60.0%
CCCGATCCCTGAGACGAAAC+AGG - chr7.2:19558269-19558288 None:intergenic 60.0%
CCGATGTACCCACTGCATCC+AGG + chr7.2:19558782-19558801 MS.gene013961:CDS 60.0%
CGGGTTCCAGGAAGTGGATC+TGG - chr7.2:19560423-19560442 None:intergenic 60.0%
CTCTTCGAAGCCGCAGCAGT+TGG - chr7.2:19558911-19558930 None:intergenic 60.0%
CTGGAAGGAATGGGGAAGCG+GGG + chr7.2:19559164-19559183 MS.gene013961:CDS 60.0%
GAAGCCTCAGCCAACTGCTG+CGG + chr7.2:19558898-19558917 MS.gene013961:CDS 60.0%
GAAGTGGATCTGGGAGGGTG+TGG - chr7.2:19560413-19560432 None:intergenic 60.0%
GCCGGAATCAGGTGCTTCTG+TGG + chr7.2:19558070-19558089 MS.gene013961:CDS 60.0%
GGAGGTCGTTGTCGATGGAG+AGG + chr7.2:19558474-19558493 MS.gene013961:CDS 60.0%
TCGTCTCAGGGATCGGGGAA+CGG + chr7.2:19558272-19558291 MS.gene013961:CDS 60.0%
TCTCACCGTTCAACCACCGC+CGG + chr7.2:19557794-19557813 MS.gene013961:CDS 60.0%
TGGCTCCGAAGTCGCTCTCT+CGG + chr7.2:19560571-19560590 MS.gene013961:CDS 60.0%
! TTGCCGGGCAGGTGGTCTTT+TGG - chr7.2:19560480-19560499 None:intergenic 60.0%
!! GGTGCCATTCCTGGATGCAG+TGG - chr7.2:19558794-19558813 None:intergenic 60.0%
GAAGCCGCAGCAGTTGGCTG+AGG - chr7.2:19558905-19558924 None:intergenic 65.0%
GGATCGGGGAACGGTGGATC+GGG + chr7.2:19558281-19558300 MS.gene013961:CDS 65.0%
GGGATCGGGGAACGGTGGAT+CGG + chr7.2:19558280-19558299 MS.gene013961:CDS 65.0%
GGGGAAGCGGGGTTTCCGAA+TGG + chr7.2:19559175-19559194 MS.gene013961:CDS 65.0%
TCAGGTGGTTGTTCCGGCGG+TGG - chr7.2:19557810-19557829 None:intergenic 65.0%
TCTCAGGGATCGGGGAACGG+TGG + chr7.2:19558275-19558294 MS.gene013961:CDS 65.0%
! AGTGGGTACATCGGGGCACC+AGG - chr7.2:19558776-19558795 None:intergenic 65.0%
! GTGGATCTGGGAGGGTGTGG+AGG - chr7.2:19560410-19560429 None:intergenic 65.0%
! TACATCGGGGCACCAGGTGG+TGG - chr7.2:19558770-19558789 None:intergenic 65.0%
TGTCCACCACCGCCACCACC+TGG + chr7.2:19558755-19558774 MS.gene013961:CDS 70.0%
! ATCGGGGCACCAGGTGGTGG+CGG - chr7.2:19558767-19558786 None:intergenic 70.0%
! GGGTACATCGGGGCACCAGG+TGG - chr7.2:19558773-19558792 None:intergenic 70.0%
!! GCACCAGGTGGTGGCGGTGG+TGG - chr7.2:19558761-19558780 None:intergenic 75.0%
!!! GGGGCACCAGGTGGTGGCGG+TGG - chr7.2:19558764-19558783 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 19557780 19560686 19557780 ID=MS.gene013961
chr7.2 mRNA 19557780 19560686 19557780 ID=MS.gene013961.t1;Parent=MS.gene013961
chr7.2 exon 19557780 19559652 19557780 ID=MS.gene013961.t1.exon1;Parent=MS.gene013961.t1
chr7.2 CDS 19557780 19559652 19557780 ID=cds.MS.gene013961.t1;Parent=MS.gene013961.t1
chr7.2 exon 19560253 19560686 19560253 ID=MS.gene013961.t1.exon2;Parent=MS.gene013961.t1
chr7.2 CDS 19560253 19560686 19560253 ID=cds.MS.gene013961.t1;Parent=MS.gene013961.t1
Gene Sequence

>MS.gene013961

ATGGCTGATTCAATTCTCACCGTTCAACCACCGCCGGAACAACCACCTGAACAACTACCGTCGTCTGATCTCGATTTCAACGACTACGGTGGCGAATTCAACAACACCGCTCTTCCTTCATTTGACTCTTTCTTCAATGATTCAGATCCCGATCTCGATTTCCTTGGCGATTTCGAAATCACGTTTGATGATCTAGATAATCTCCCTATCCCGTCGGAGACTGATGATTATCTTTTTCATGATGCATGCAACGCTGATGGTGTTCCGATTTCGCATGTGATTGATAATTCGCCGGAATCAGGTGCTTCTGTGGTTTCCGGTGATCAGAGTCCTGGTGTTTCTAGGTTTTTGAATTTGGATTCAGTTGCGGATGATGATGAGAAAGAGAATTCAGTTGATGTGAAAGTTTTGAGCTTTCCGTCACCGGAGACTGAAAATGAAAATACTGAAAATTCTTACAGGGAAAGGGAAGAGTCTTCGAATGGACCTGTTTCGTCTCAGGGATCGGGGAACGGTGGATCGGGTGTGTATGAAGCCATGAATTCGCCGGAGAGGGATGTTTCATCTTTTCATGAAAATGAAAATGTGAAAGAGGATGTGAAATTGGAGGGAAGTGTTGTTAAAGGCTGTGATCTGAAGAGGAAGAAAGAGAATAGCTATGAAAGTGCTGAGAATCGAACCTCGAAATGTAGTAGGAGGTCGTTGTCGATGGAGAGGACGGAACAACAACAGTTTCAACAACAAGCTCAATCTGGTTTTGATGGAATTGAAGATGAGGATGAGAAGAGGAAAGCAAGGTTGATGAGGAATAGAGAAAGTGCACAGCTTTCAAGGCAGAGGAAGAAGCATTATGTGGAGGAGCTTGAGGAGAAAGTGAGATCAATGCATTCAACAATTACTGATTTAAGTAGTAAGATTACTTATGTAATGGCTGAGAATGCTACACTTAGGCAACAATTGAGTGGTGGTGTGATGTGTCCACCACCGCCACCACCTGGTGCCCCGATGTACCCACTGCATCCAGGAATGGCACCTATGCCTTATGCATGGATGCCCTGTGCTCCTTATGTTGTTAAACCTCAAGGTTCTCAGGTTCCTTTGGTTCCGATTCCGAGGTTGAAGCCTCAGCCAACTGCTGCGGCTTCGAAGAGTAAAAAGAGTGAGAGTAAGAAGAGTGAGGTGAAAACTAAGAAAGTTGCTAGTATTAGTTTGTTGGGTTTGTTTTTCTGTATCATGCTTTTTGGTGGACTTGTTCCTTTGGTAGATTTTAAGTTTGGAGGTTTAGTGGATAATGTTTCTGGTAGGTCTAGTTATGTTAGTGATAGATGGTTTTATGGTCATGGTGGAGGGAAGATTTGGCCTGTAAATGGTCATATGAATGAATCTGGAAGGAATGGGGAAGCGGGGTTTCCGAATGGAAGGTTTGGTATTTCTGATAGGAATAATTATGAAAGAGGGAGGATACTAGGTGAAGAAATGAATGAGCCGAAAGACTCAAGTTGTTTTGGTCATCGAGACAATGCTAGCGAGCCACTGCTTGCTTCTTTGTATGTTCCTAGGAATGATAAGCTGGTGAAGATCGATGGAAACTTGATAATCCATTCTATTATGGCTAGTGAGAAAGCCATGGCATCTCAAGATGCTCAGGGGAAGAAGGAGAAGAGTGAAACTGGTCTTGCAATTCCTAAAGATAATTCCGCATTGGCTATTCCCGAAGTTGGAAGAAATAGAGGTCAACATCCGAATGTGTACAGGGTTTCTGCTGAACAAAGAAGGGCTATTGGCTCTGGTTCAACTAAAACCTTGAAGGACCATATGAAGTCTTCTGCAACTGATGGTAAAATGCAACAGTGGTTTCGTGAAGGAATTGCAGGTGAATATCCTTTAATTATGCATGTCCTCTAATTTTACGCTATAGATGGTTTGGTAGGAATGATACATTCTCTTGTGGTGATTATATCATGTTTTGGTTGTTGCTGTTGAATCACTAATCACATTTTTGTGATTGGGTAGCACATTTTATAGGTTCAGTGTTTTCAATTTTGGGGATATTTCAGTGTTTGAGATGCTTTTTATATTAAGCTCACATGTTTTGTGTTGGTTGTTCCTTGGTTTCCCGTCGTTAAGAAACCATCTTGCTGTTTGGTAATTAAAAATATTTGGTCAGATGTCTTCCACACTTGGTCAGATAGACTTCTTGAATTCCTTGAGAGAGTCTCAAACTATATCACTAACTTGGTTTTAATTGTGCTTAATTTGATTTGATTGCACTTTTGGTTCATTGTTGCATTTATGAAATAGCTTTTATTATGCCATAATTACAATCATCATCCAATGTTGTCCACCTCTCAACCATGCTTGAGCATCTTTTGCTTGTTGTACAAGTTTTATGCCTGACATAATTACCTGCTTGACTATTTTAAAGCACATTAAAGATTGAAGTTATCCTGAATTTTCTCGTCCAATGATGCAGGTCCAATGCTAAGTTCTGGCATGTGTACTGAAGTTTTTCAGTTTGATGTTTCTCCAACTCCTGGAGCAATAGTTCCAGCAGCAGCAGTGGCCAATATTTCTTCTGAAACCCGCCAAAATTCCACAACTGTCAACAAGAGCAGGAACAGAAGAATCCTCCACACCCTCCCAGATCCACTTCCTGGAACCCGTCTGAACATAACTGAAGAACGTGCAAGAAATTTGCCAAAAGACCACCTGCCCGGCAATAAATCATCTATGGTCGTTTCTGTGCTTGTTGATCCCAAAGAGGTAGGAGATGGCGATGTTGATGGCATGATGGCTCCGAAGTCGCTCTCTCGGATTTTCGTGGTTGTTTTAATCGACAGTGTCAAGTATGTGACTTACTCATGTGGTCTTCCCCGTGTTTCTCCTTTGGTGACAGCTTATGTTTGA
Protein sequence

>MS.gene013961.t1

MADSILTVQPPPEQPPEQLPSSDLDFNDYGGEFNNTALPSFDSFFNDSDPDLDFLGDFEITFDDLDNLPIPSETDDYLFHDACNADGVPISHVIDNSPESGASVVSGDQSPGVSRFLNLDSVADDDEKENSVDVKVLSFPSPETENENTENSYREREESSNGPVSSQGSGNGGSGVYEAMNSPERDVSSFHENENVKEDVKLEGSVVKGCDLKRKKENSYESAENRTSKCSRRSLSMERTEQQQFQQQAQSGFDGIEDEDEKRKARLMRNRESAQLSRQRKKHYVEELEEKVRSMHSTITDLSSKITYVMAENATLRQQLSGGVMCPPPPPPGAPMYPLHPGMAPMPYAWMPCAPYVVKPQGSQVPLVPIPRLKPQPTAAASKSKKSESKKSEVKTKKVASISLLGLFFCIMLFGGLVPLVDFKFGGLVDNVSGRSSYVSDRWFYGHGGGKIWPVNGHMNESGRNGEAGFPNGRFGISDRNNYERGRILGEEMNEPKDSSCFGHRDNASEPLLASLYVPRNDKLVKIDGNLIIHSIMASEKAMASQDAQGKKEKSETGLAIPKDNSALAIPEVGRNRGQHPNVYRVSAEQRRAIGSGSTKTLKDHMKSSATDGKMQQWFREGIAGPMLSSGMCTEVFQFDVSPTPGAIVPAAAVANISSETRQNSTTVNKSRNRRILHTLPDPLPGTRLNITEERARNLPKDHLPGNKSSMVVSVLVDPKEVGDGDVDGMMAPKSLSRIFVVVLIDSVKYVTYSCGLPRVSPLVTAYV