Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013973.t1 | XP_003624928.1 | 92.6 | 444 | 32 | 1 | 1 | 443 | 4 | 447 | 1.40E-220 | 775.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013973.t1 | Q9FHK9 | 46.4 | 463 | 196 | 10 | 3 | 443 | 4 | 436 | 3.2e-88 | 327.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013973.t1 | G7L5V3 | 92.6 | 444 | 32 | 1 | 1 | 443 | 1 | 444 | 1.0e-220 | 775.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013973.t1 | TR | IWS1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013973.t1 | MTR_7g089140 | 96.622 | 444 | 14 | 1 | 1 | 443 | 4 | 447 | 0.0 | 882 |
| MS.gene013973.t1 | MTR_7g089140 | 96.622 | 444 | 14 | 1 | 1 | 443 | 1 | 444 | 0.0 | 882 |
| MS.gene013973.t1 | MTR_7g089140 | 97.070 | 273 | 8 | 0 | 1 | 273 | 1 | 273 | 0.0 | 548 |
| MS.gene013973.t1 | MTR_7g089140 | 97.070 | 273 | 8 | 0 | 1 | 273 | 4 | 276 | 0.0 | 548 |
| MS.gene013973.t1 | MTR_3g095380 | 33.175 | 211 | 120 | 6 | 6 | 208 | 3 | 200 | 4.15e-23 | 99.8 |
| MS.gene013973.t1 | MTR_3g095380 | 33.175 | 211 | 120 | 6 | 6 | 208 | 3 | 200 | 5.97e-23 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013973.t1 | AT5G05140 | 46.868 | 463 | 194 | 11 | 3 | 443 | 4 | 436 | 3.15e-120 | 358 |
| MS.gene013973.t1 | AT3G10820 | 41.898 | 432 | 204 | 9 | 3 | 433 | 7 | 392 | 1.38e-88 | 275 |
| MS.gene013973.t1 | AT3G10820 | 41.898 | 432 | 204 | 9 | 3 | 433 | 7 | 392 | 6.08e-86 | 274 |
| MS.gene013973.t1 | AT5G09850 | 30.769 | 221 | 113 | 5 | 6 | 208 | 3 | 201 | 7.13e-22 | 96.7 |
| MS.gene013973.t1 | AT5G09850 | 30.769 | 221 | 113 | 5 | 6 | 208 | 3 | 201 | 7.13e-22 | 96.7 |
| MS.gene013973.t1 | AT5G09850 | 30.769 | 221 | 113 | 5 | 6 | 208 | 3 | 201 | 7.13e-22 | 96.7 |
| MS.gene013973.t1 | AT5G09850 | 30.769 | 221 | 113 | 5 | 6 | 208 | 3 | 201 | 7.13e-22 | 96.7 |
| MS.gene013973.t1 | AT5G09850 | 30.769 | 221 | 113 | 5 | 6 | 208 | 3 | 201 | 2.12e-21 | 95.5 |
Find 111 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAGCTGTAATTGCTAAT+AGG | 0.172892 | 7.2:-19351751 | None:intergenic |
| CCATTGCCGATTGTGATTTC+CGG | 0.189148 | 7.2:-19353944 | None:intergenic |
| TTCAACAACAGATGGATTTC+TGG | 0.196234 | 7.2:-19352890 | None:intergenic |
| TGGGCATTGAGAGGCCTCTT+AGG | 0.273392 | 7.2:-19353538 | None:intergenic |
| CGCTGAATGTTTGAGTTTAG+TGG | 0.274638 | 7.2:-19353463 | None:intergenic |
| CATTGCCGATTGTGATTTCC+GGG | 0.275321 | 7.2:-19353943 | None:intergenic |
| GCCGAAGATGCCTCTGAAAA+TGG | 0.300933 | 7.2:+19353501 | MS.gene013973:CDS |
| CTCTTGAAGTCTTCGCTTAG+TGG | 0.327399 | 7.2:-19353685 | None:intergenic |
| CCTATTAGCAATTACAGCTT+TGG | 0.340233 | 7.2:+19351751 | MS.gene013973:CDS |
| CAAAGCTGTAATTGCTAATA+GGG | 0.344245 | 7.2:-19351750 | None:intergenic |
| TCAGCCGCCATCGGTTTATT+AGG | 0.348688 | 7.2:-19353424 | None:intergenic |
| CTCCTAGACTTAAACTCCTT+TGG | 0.357491 | 7.2:-19351538 | None:intergenic |
| GCTTTCTTTGTTGCCCCAAC+TGG | 0.358676 | 7.2:+19352964 | MS.gene013973:CDS |
| AGTTATCAACAAGCTGAAAA+TGG | 0.359783 | 7.2:+19353708 | MS.gene013973:CDS |
| TTGTATTGTCCTTTGCCTCT+TGG | 0.365164 | 7.2:-19353860 | None:intergenic |
| AGGACTCCCGTCACCTCCTT+TGG | 0.378418 | 7.2:+19352933 | MS.gene013973:CDS |
| TTACTTTCGTTCATCGAATT+CGG | 0.381995 | 7.2:+19351465 | MS.gene013973:CDS |
| AATTTGCAGTCAACTGAGAT+TGG | 0.383050 | 7.2:+19352265 | MS.gene013973:intron |
| AAACCGATGGCGGCTGATAC+TGG | 0.392097 | 7.2:+19353430 | MS.gene013973:CDS |
| CGTTGGACAGACCCTTGCTT+TGG | 0.393563 | 7.2:-19353904 | None:intergenic |
| TGTTATGCTGAATCGTTGTA+AGG | 0.399819 | 7.2:+19351588 | MS.gene013973:CDS |
| TTGTCACGGTTCTTGTTGAA+TGG | 0.419455 | 7.2:-19353277 | None:intergenic |
| GATTGCAGTAGGGAAGAAAA+TGG | 0.423504 | 7.2:+19351712 | MS.gene013973:CDS |
| CGGAAATCACAATCGGCAAT+GGG | 0.431117 | 7.2:+19353945 | MS.gene013973:CDS |
| AGAGTTCAATTGTACCAGTT+GGG | 0.432169 | 7.2:-19352978 | None:intergenic |
| TTGGGATTGAAGATGAAGTC+AGG | 0.434760 | 7.2:+19351421 | None:intergenic |
| AGCTCTTGGCACTCAAACTA+AGG | 0.440911 | 7.2:+19353312 | MS.gene013973:CDS |
| GTCCAAGTGTTCAGATGATT+CGG | 0.441028 | 7.2:+19353650 | MS.gene013973:CDS |
| CCGTCACCTCCTTTGGATGA+AGG | 0.458747 | 7.2:+19352940 | MS.gene013973:CDS |
| CTGTCTTTCTTCCGTTGTCA+CGG | 0.459719 | 7.2:-19353291 | None:intergenic |
| ATGTTTGTAGCTTCAGAAGA+AGG | 0.461419 | 7.2:+19352856 | MS.gene013973:intron |
| TGAGAGTTCGTGCTAGTTGA+CGG | 0.465786 | 7.2:-19352330 | None:intergenic |
| CGTCACCTCCTTTGGATGAA+GGG | 0.466548 | 7.2:+19352941 | MS.gene013973:CDS |
| TCATCACCATTATCATCATC+AGG | 0.473283 | 7.2:-19351637 | None:intergenic |
| GTTTGAAATGTGTATTCCGT+TGG | 0.475671 | 7.2:-19353921 | None:intergenic |
| GGGCATTGAGAGGCCTCTTA+GGG | 0.490032 | 7.2:-19353537 | None:intergenic |
| GAGTTTAAGTCTAGGAGAGA+TGG | 0.491402 | 7.2:+19351544 | MS.gene013973:CDS |
| AACGGAAGAAAGACAGCTCT+TGG | 0.493030 | 7.2:+19353298 | MS.gene013973:CDS |
| TTTGTTGTCCTTGGCAGTGA+CGG | 0.495227 | 7.2:-19353365 | None:intergenic |
| ACAGATGGATTTCTGGAATC+CGG | 0.496893 | 7.2:-19352883 | None:intergenic |
| GCAAAGGACAATACAAGTAA+TGG | 0.500794 | 7.2:+19353867 | MS.gene013973:CDS |
| CCGGAAATCACAATCGGCAA+TGG | 0.503234 | 7.2:+19353944 | MS.gene013973:CDS |
| GAAAATGAAGAAGAGGAAGA+AGG | 0.503793 | 7.2:+19352910 | MS.gene013973:CDS |
| CAAGAGAAGTTCTGTTAGAG+AGG | 0.509666 | 7.2:+19351666 | MS.gene013973:CDS |
| AAGATTATACCTCATCTTCA+CGG | 0.513302 | 7.2:-19351858 | None:intergenic |
| TGCTGCTTCTGATTGTCCAA+AGG | 0.514908 | 7.2:+19351522 | MS.gene013973:CDS |
| GCTGGTCAATGCGTGGGTGA+AGG | 0.515961 | 7.2:+19352706 | MS.gene013973:CDS |
| AGAGCAAGGTGGATTGCAGT+AGG | 0.520399 | 7.2:+19351701 | MS.gene013973:CDS |
| GCAATCACAACTTGCTGCTG+AGG | 0.525782 | 7.2:+19351807 | MS.gene013973:CDS |
| CACAATCGGCAATGGGGCAA+CGG | 0.528995 | 7.2:+19353952 | MS.gene013973:CDS |
| AGCCGAATCATCTGAACACT+TGG | 0.534167 | 7.2:-19353652 | None:intergenic |
| ATAAATGATCTTCCAAAGCA+AGG | 0.538473 | 7.2:+19353892 | MS.gene013973:CDS |
| ACATCTTGCTGGGCATTGAG+AGG | 0.541123 | 7.2:-19353547 | None:intergenic |
| GTCACCTCCTTTGGATGAAG+GGG | 0.541178 | 7.2:+19352942 | MS.gene013973:CDS |
| GTGAATCATCTAAGAAAGCA+TGG | 0.544384 | 7.2:+19352295 | MS.gene013973:CDS |
| GGGTGCTAGCAAAGAGAGCA+AGG | 0.546467 | 7.2:+19351687 | MS.gene013973:CDS |
| TAATTGCAGCCAAGAGGCAA+AGG | 0.551496 | 7.2:+19353851 | MS.gene013973:intron |
| TCAAACCCGGAAATCACAAT+CGG | 0.553682 | 7.2:+19353938 | MS.gene013973:CDS |
| TGTAAAGTTCTTCGATGGCA+TGG | 0.555348 | 7.2:+19353110 | MS.gene013973:intron |
| TGTTGTTGAAAATGAAGAAG+AGG | 0.557042 | 7.2:+19352903 | MS.gene013973:CDS |
| CATGTTGCTACAGTCTGACT+CGG | 0.562250 | 7.2:+19352074 | MS.gene013973:intron |
| ACGGCTGTTTCATTAGATGC+CGG | 0.562358 | 7.2:-19353346 | None:intergenic |
| TAAATGATCTTCCAAAGCAA+GGG | 0.564834 | 7.2:+19353893 | MS.gene013973:CDS |
| GAGAGTTCAATTGTACCAGT+TGG | 0.566913 | 7.2:-19352979 | None:intergenic |
| CCTTCATCCAAAGGAGGTGA+CGG | 0.567401 | 7.2:-19352940 | None:intergenic |
| CGGAATACACATTTCAAACC+CGG | 0.569195 | 7.2:+19353925 | MS.gene013973:CDS |
| TTCGATGGCATGGATGATGA+TGG | 0.571056 | 7.2:+19353120 | MS.gene013973:CDS |
| GAGTTCAATTGTACCAGTTG+GGG | 0.574661 | 7.2:-19352977 | None:intergenic |
| TAGGGAAGAAAATGGAGTGA+TGG | 0.575118 | 7.2:+19351720 | MS.gene013973:CDS |
| CTTCATCCAAAGGAGGTGAC+GGG | 0.575720 | 7.2:-19352939 | None:intergenic |
| TGGTACAATTGAACTCTCAC+AGG | 0.578719 | 7.2:+19352984 | MS.gene013973:CDS |
| GTTATGCTGAATCGTTGTAA+GGG | 0.581949 | 7.2:+19351589 | MS.gene013973:CDS |
| GAGCAAGGTGGATTGCAGTA+GGG | 0.582197 | 7.2:+19351702 | MS.gene013973:CDS |
| AGGCATCTTCGGCTCCACAT+TGG | 0.582725 | 7.2:-19353491 | None:intergenic |
| AAAACAGTACTGTCCCTAAG+AGG | 0.584288 | 7.2:+19353524 | MS.gene013973:CDS |
| AAGAAAGCCCCTTCATCCAA+AGG | 0.586587 | 7.2:-19352949 | None:intergenic |
| TTCTAGTGGATGGAAAGAGC+TGG | 0.587363 | 7.2:+19352688 | MS.gene013973:intron |
| CAAAGCAAGGGTCTGTCCAA+CGG | 0.592243 | 7.2:+19353905 | MS.gene013973:CDS |
| TGGGATTGAAGATGAAGTCA+GGG | 0.594781 | 7.2:+19351422 | None:intergenic |
| TCTAAGAAAGCATGGATCGA+AGG | 0.595986 | 7.2:+19352303 | MS.gene013973:CDS |
| AATGAAGAAGAGGAAGAAGG+AGG | 0.597918 | 7.2:+19352913 | MS.gene013973:CDS |
| AAGAGAAGTTCTGTTAGAGA+GGG | 0.600208 | 7.2:+19351667 | MS.gene013973:CDS |
| ACTCTCTGTCGATCTTCTGA+AGG | 0.600474 | 7.2:+19352134 | MS.gene013973:CDS |
| GACGATGTAAAGTTCTTCGA+TGG | 0.605011 | 7.2:+19353105 | MS.gene013973:intron |
| AATTATTAATTGCAGCCAAG+AGG | 0.608124 | 7.2:+19353845 | MS.gene013973:intron |
| CGACCAGTATCAGCCGCCAT+CGG | 0.609021 | 7.2:-19353433 | None:intergenic |
| TCAACAACCACACCTGTCGC+AGG | 0.609609 | 7.2:+19352731 | MS.gene013973:CDS |
| TGAAACAGCCGTCACTGCCA+AGG | 0.610149 | 7.2:+19353357 | MS.gene013973:CDS |
| GCAGTCAACTGAGATTGGAA+AGG | 0.610845 | 7.2:+19352270 | MS.gene013973:intron |
| TGCTGTTTGAGTCTCTGAGG+AGG | 0.611179 | 7.2:+19352097 | MS.gene013973:CDS |
| CATTCAGCGAAAAGCCAATG+TGG | 0.612860 | 7.2:+19353477 | MS.gene013973:CDS |
| TCTCAATAACCGTGAAGATG+AGG | 0.613333 | 7.2:+19351849 | MS.gene013973:CDS |
| AATTCTACCTGCGACAGGTG+TGG | 0.614711 | 7.2:-19352738 | None:intergenic |
| CAGGGTCACTTGATCAGTGG+AGG | 0.617583 | 7.2:+19351440 | MS.gene013973:CDS |
| TTCAACAAGAACCGTGACAA+CGG | 0.624350 | 7.2:+19353280 | MS.gene013973:CDS |
| GGAAAGAGCTGGTCAATGCG+TGG | 0.625905 | 7.2:+19352699 | MS.gene013973:CDS |
| GTCCAAAGGAGTTTAAGTCT+AGG | 0.627009 | 7.2:+19351536 | MS.gene013973:CDS |
| TCTGTGCCTGATGATGATAA+TGG | 0.629006 | 7.2:+19351631 | MS.gene013973:CDS |
| CGGTGCTGTTTGAGTCTCTG+AGG | 0.632670 | 7.2:+19352094 | MS.gene013973:CDS |
| GAAAGAGCTGGTCAATGCGT+GGG | 0.636719 | 7.2:+19352700 | MS.gene013973:CDS |
| TCGTTGTAAGGGGTGTGAGA+AGG | 0.640457 | 7.2:+19351600 | MS.gene013973:CDS |
| AAGCAGCAACAACAATTGCA+TGG | 0.641026 | 7.2:-19351507 | None:intergenic |
| AGTCAGGGTCACTTGATCAG+TGG | 0.646882 | 7.2:+19351437 | MS.gene013973:CDS |
| AGCTTCAGAAGAAGGCACAC+CGG | 0.647483 | 7.2:+19352864 | MS.gene013973:intron |
| GGTGAGGCCTAATAAACCGA+TGG | 0.659654 | 7.2:+19353417 | MS.gene013973:CDS |
| TTATGCTGAATCGTTGTAAG+GGG | 0.662020 | 7.2:+19351590 | MS.gene013973:CDS |
| GAGGCCTAATAAACCGATGG+CGG | 0.667726 | 7.2:+19353420 | MS.gene013973:CDS |
| TTGGCACTCAAACTAAGGAG+AGG | 0.668123 | 7.2:+19353317 | MS.gene013973:CDS |
| AAAGCCCCTTCATCCAAAGG+AGG | 0.683333 | 7.2:-19352946 | None:intergenic |
| GGAAATCACAATCGGCAATG+GGG | 0.692012 | 7.2:+19353946 | MS.gene013973:CDS |
| TGCTAGCAAAGAGAGCAAGG+TGG | 0.724881 | 7.2:+19351690 | MS.gene013973:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTACAAAATTAATTCATGT+TGG | + | chr7.2:19352819-19352838 | MS.gene013973:intron | 15.0% |
| !!! | AGTATGATTTATTTTTTTCA+TGG | + | chr7.2:19352356-19352375 | MS.gene013973:intron | 15.0% |
| !!! | TTAAATTGATGATTGTAAAT+GGG | + | chr7.2:19353223-19353242 | MS.gene013973:intron | 15.0% |
| !! | AAAATGGTTCAAATTAACTA+AGG | - | chr7.2:19352491-19352510 | None:intergenic | 20.0% |
| !! | GATATGAATCAAAACAATAA+CGG | - | chr7.2:19352579-19352598 | None:intergenic | 20.0% |
| !! | GTATATATGAAACTGAATTT+GGG | + | chr7.2:19353057-19353076 | MS.gene013973:intron | 20.0% |
| !! | TGTATATATGAAACTGAATT+TGG | + | chr7.2:19353056-19353075 | MS.gene013973:intron | 20.0% |
| !! | TTCTCAAACTTATATTTCAA+AGG | + | chr7.2:19353032-19353051 | MS.gene013973:intron | 20.0% |
| !! | TTGAAATATAAGTTTGAGAA+GGG | - | chr7.2:19353032-19353051 | None:intergenic | 20.0% |
| !!! | ATCTGTTAAATGTTTTCAAT+TGG | + | chr7.2:19352621-19352640 | MS.gene013973:intron | 20.0% |
| !!! | CTTAAATTGATGATTGTAAA+TGG | + | chr7.2:19353222-19353241 | MS.gene013973:intron | 20.0% |
| !!! | TAAATTGATGATTGTAAATG+GGG | + | chr7.2:19353224-19353243 | MS.gene013973:intron | 20.0% |
| !!! | TAATCTTTTCTAATTTCTAG+TGG | + | chr7.2:19352674-19352693 | MS.gene013973:intron | 20.0% |
| !!! | TGGTTTATTTTATACAATCA+TGG | + | chr7.2:19352404-19352423 | MS.gene013973:intron | 20.0% |
| !!! | TGTTTTGATATGGTTTTTTT+TGG | + | chr7.2:19351979-19351998 | MS.gene013973:intron | 20.0% |
| !!! | TTTGAAATATAAGTTTGAGA+AGG | - | chr7.2:19353033-19353052 | None:intergenic | 20.0% |
| ! | TCACTATCATTACATAATCA+TGG | + | chr7.2:19352451-19352470 | MS.gene013973:intron | 25.0% |
| !! | AACAATCTTAAAAAAAGCAC+TGG | - | chr7.2:19352224-19352243 | None:intergenic | 25.0% |
| !! | ATGTTTGATGTGATGATTTT+TGG | + | chr7.2:19351948-19351967 | MS.gene013973:intron | 25.0% |
| !! | GCATTAATTTTGTAAGTTTG+TGG | + | chr7.2:19353595-19353614 | MS.gene013973:intron | 25.0% |
| !! | TTTTATCTACCTTATTAGTG+TGG | + | chr7.2:19352761-19352780 | MS.gene013973:intron | 25.0% |
| !!! | AGTTTAGAATTTGAGTTGTT+CGG | - | chr7.2:19352650-19352669 | None:intergenic | 25.0% |
| !!! | CTTCTGAAACACAAAAATTA+AGG | - | chr7.2:19353631-19353650 | None:intergenic | 25.0% |
| !!! | TTGATATGGTTTTTTTTGGA+TGG | + | chr7.2:19351983-19352002 | MS.gene013973:intron | 25.0% |
| AAGATTATACCTCATCTTCA+CGG | - | chr7.2:19351861-19351880 | None:intergenic | 30.0% | |
| AATTATTAATTGCAGCCAAG+AGG | + | chr7.2:19353845-19353864 | MS.gene013973:intron | 30.0% | |
| AGTTATCAACAAGCTGAAAA+TGG | + | chr7.2:19353708-19353727 | MS.gene013973:CDS | 30.0% | |
| ATAAATGATCTTCCAAAGCA+AGG | + | chr7.2:19353892-19353911 | MS.gene013973:CDS | 30.0% | |
| ATAAGTTTGAGAAGGGAAAA+AGG | - | chr7.2:19353025-19353044 | None:intergenic | 30.0% | |
| ATTGACACCAAACTTTAGAT+AGG | + | chr7.2:19352541-19352560 | MS.gene013973:intron | 30.0% | |
| ATTGATGAGTACAATTATGC+TGG | + | chr7.2:19352785-19352804 | MS.gene013973:intron | 30.0% | |
| CAAAGCTGTAATTGCTAATA+GGG | - | chr7.2:19351753-19351772 | None:intergenic | 30.0% | |
| CACATGACTAACTAAGAAAA+TGG | - | chr7.2:19352507-19352526 | None:intergenic | 30.0% | |
| CATCAATGAGTTATGAATTG+AGG | - | chr7.2:19353813-19353832 | None:intergenic | 30.0% | |
| TAAATGATCTTCCAAAGCAA+GGG | + | chr7.2:19353893-19353912 | MS.gene013973:CDS | 30.0% | |
| TCATCAATACCACACTAATA+AGG | - | chr7.2:19352773-19352792 | None:intergenic | 30.0% | |
| TGTTGTTGAAAATGAAGAAG+AGG | + | chr7.2:19352903-19352922 | MS.gene013973:CDS | 30.0% | |
| TTACTTTCGTTCATCGAATT+CGG | + | chr7.2:19351465-19351484 | MS.gene013973:CDS | 30.0% | |
| TTCCTTGTGTTGTATATATC+TGG | + | chr7.2:19353083-19353102 | MS.gene013973:intron | 30.0% | |
| ! | AATCATCAATTTAAGACGAG+GGG | - | chr7.2:19353217-19353236 | None:intergenic | 30.0% |
| ! | ACAATCATCAATTTAAGACG+AGG | - | chr7.2:19353219-19353238 | None:intergenic | 30.0% |
| ! | CAATCATCAATTTAAGACGA+GGG | - | chr7.2:19353218-19353237 | None:intergenic | 30.0% |
| ! | TATTTTGCTTACATCTTGCT+GGG | - | chr7.2:19353560-19353579 | None:intergenic | 30.0% |
| ! | TCATTCACCTATCTAAAGTT+TGG | - | chr7.2:19352551-19352570 | None:intergenic | 30.0% |
| ! | TCTTCATTTTCAACAACAGA+TGG | - | chr7.2:19352901-19352920 | None:intergenic | 30.0% |
| !! | GCATTTTTGTTCTTGTTTGA+AGG | + | chr7.2:19352005-19352024 | MS.gene013973:intron | 30.0% |
| !! | TGATGTGATGATTTTTGGAA+AGG | + | chr7.2:19351953-19351972 | MS.gene013973:intron | 30.0% |
| !! | TTATTTTGCTTACATCTTGC+TGG | - | chr7.2:19353561-19353580 | None:intergenic | 30.0% |
| !!! | CTTTTCTAATTTCTAGTGGA+TGG | + | chr7.2:19352678-19352697 | MS.gene013973:intron | 30.0% |
| !!! | GGAAAGGATATGTTTTGATA+TGG | + | chr7.2:19351969-19351988 | MS.gene013973:intron | 30.0% |
| AAGAGAAGTTCTGTTAGAGA+GGG | + | chr7.2:19351667-19351686 | MS.gene013973:CDS | 35.0% | |
| AATTTGCAGTCAACTGAGAT+TGG | + | chr7.2:19352265-19352284 | MS.gene013973:intron | 35.0% | |
| AGAGTTCAATTGTACCAGTT+GGG | - | chr7.2:19352981-19353000 | None:intergenic | 35.0% | |
| ATGTTTGTAGCTTCAGAAGA+AGG | + | chr7.2:19352856-19352875 | MS.gene013973:intron | 35.0% | |
| CCAAAGCTGTAATTGCTAAT+AGG | - | chr7.2:19351754-19351773 | None:intergenic | 35.0% | |
| CCTATTAGCAATTACAGCTT+TGG | + | chr7.2:19351751-19351770 | MS.gene013973:CDS | 35.0% | |
| CTTTAGATAGGTGAATGACT+TGG | + | chr7.2:19352553-19352572 | MS.gene013973:intron | 35.0% | |
| GAAAATGAAGAAGAGGAAGA+AGG | + | chr7.2:19352910-19352929 | MS.gene013973:CDS | 35.0% | |
| GCAAAGGACAATACAAGTAA+TGG | + | chr7.2:19353867-19353886 | MS.gene013973:CDS | 35.0% | |
| GTCCAGATATATACAACACA+AGG | - | chr7.2:19353088-19353107 | None:intergenic | 35.0% | |
| GTGAATCATCTAAGAAAGCA+TGG | + | chr7.2:19352295-19352314 | MS.gene013973:CDS | 35.0% | |
| GTTATGCTGAATCGTTGTAA+GGG | + | chr7.2:19351589-19351608 | MS.gene013973:CDS | 35.0% | |
| TAAAAAATTCTACCTGCGAC+AGG | - | chr7.2:19352746-19352765 | None:intergenic | 35.0% | |
| TCATCACCATTATCATCATC+AGG | - | chr7.2:19351640-19351659 | None:intergenic | 35.0% | |
| TGTTATGCTGAATCGTTGTA+AGG | + | chr7.2:19351588-19351607 | MS.gene013973:CDS | 35.0% | |
| TGTTTCTTGTCTGCAAATTG+TGG | + | chr7.2:19352384-19352403 | MS.gene013973:intron | 35.0% | |
| TTATGCTGAATCGTTGTAAG+GGG | + | chr7.2:19351590-19351609 | MS.gene013973:CDS | 35.0% | |
| ! | AACTAAGGAGAGGAATTTTC+CGG | + | chr7.2:19353327-19353346 | MS.gene013973:CDS | 35.0% |
| ! | GTACTGTTTTCCATTTTCAG+AGG | - | chr7.2:19353514-19353533 | None:intergenic | 35.0% |
| ! | GTTTGAAATGTGTATTCCGT+TGG | - | chr7.2:19353924-19353943 | None:intergenic | 35.0% |
| ! | TGAATCTTTCTTTGTCGCTT+TGG | + | chr7.2:19352164-19352183 | MS.gene013973:intron | 35.0% |
| ! | TGGTGTCAATGTTAACATCA+TGG | - | chr7.2:19352531-19352550 | None:intergenic | 35.0% |
| ! | TTCAACAACAGATGGATTTC+TGG | - | chr7.2:19352893-19352912 | None:intergenic | 35.0% |
| !! | AATCTTTCTTTGTCGCTTTG+GGG | + | chr7.2:19352166-19352185 | MS.gene013973:intron | 35.0% |
| !! | GAATCTTTCTTTGTCGCTTT+GGG | + | chr7.2:19352165-19352184 | MS.gene013973:intron | 35.0% |
| AAAACAGTACTGTCCCTAAG+AGG | + | chr7.2:19353524-19353543 | MS.gene013973:CDS | 40.0% | |
| AAGCAGCAACAACAATTGCA+TGG | - | chr7.2:19351510-19351529 | None:intergenic | 40.0% | |
| AATGAAGAAGAGGAAGAAGG+AGG | + | chr7.2:19352913-19352932 | MS.gene013973:CDS | 40.0% | |
| CAAGAGAAGTTCTGTTAGAG+AGG | + | chr7.2:19351666-19351685 | MS.gene013973:CDS | 40.0% | |
| CGGAATACACATTTCAAACC+CGG | + | chr7.2:19353925-19353944 | MS.gene013973:CDS | 40.0% | |
| CTCCTAGACTTAAACTCCTT+TGG | - | chr7.2:19351541-19351560 | None:intergenic | 40.0% | |
| GACGATGTAAAGTTCTTCGA+TGG | + | chr7.2:19353105-19353124 | MS.gene013973:intron | 40.0% | |
| GAGAGTTCAATTGTACCAGT+TGG | - | chr7.2:19352982-19353001 | None:intergenic | 40.0% | |
| GAGTTCAATTGTACCAGTTG+GGG | - | chr7.2:19352980-19352999 | None:intergenic | 40.0% | |
| GAGTTTAAGTCTAGGAGAGA+TGG | + | chr7.2:19351544-19351563 | MS.gene013973:CDS | 40.0% | |
| GATTGCAGTAGGGAAGAAAA+TGG | + | chr7.2:19351712-19351731 | MS.gene013973:CDS | 40.0% | |
| GTCCAAAGGAGTTTAAGTCT+AGG | + | chr7.2:19351536-19351555 | MS.gene013973:CDS | 40.0% | |
| GTCCAAGTGTTCAGATGATT+CGG | + | chr7.2:19353650-19353669 | MS.gene013973:CDS | 40.0% | |
| TAGGGAAGAAAATGGAGTGA+TGG | + | chr7.2:19351720-19351739 | MS.gene013973:CDS | 40.0% | |
| TCAAACCCGGAAATCACAAT+CGG | + | chr7.2:19353938-19353957 | MS.gene013973:CDS | 40.0% | |
| TCAGCACATGAAGAAAAACG+AGG | + | chr7.2:19353390-19353409 | MS.gene013973:CDS | 40.0% | |
| TCTCAATAACCGTGAAGATG+AGG | + | chr7.2:19351849-19351868 | MS.gene013973:CDS | 40.0% | |
| TGGTACAATTGAACTCTCAC+AGG | + | chr7.2:19352984-19353003 | MS.gene013973:CDS | 40.0% | |
| TGTAAAGTTCTTCGATGGCA+TGG | + | chr7.2:19353110-19353129 | MS.gene013973:intron | 40.0% | |
| TTCAACAAGAACCGTGACAA+CGG | + | chr7.2:19353280-19353299 | MS.gene013973:CDS | 40.0% | |
| TTGTATTGTCCTTTGCCTCT+TGG | - | chr7.2:19353863-19353882 | None:intergenic | 40.0% | |
| TTGTCACGGTTCTTGTTGAA+TGG | - | chr7.2:19353280-19353299 | None:intergenic | 40.0% | |
| ! | CGCTGAATGTTTGAGTTTAG+TGG | - | chr7.2:19353466-19353485 | None:intergenic | 40.0% |
| ! | CTACCTAGCTTTCGTTGTTA+CGG | + | chr7.2:19353176-19353195 | MS.gene013973:intron | 40.0% |
| ! | TCTAAGAAAGCATGGATCGA+AGG | + | chr7.2:19352303-19352322 | MS.gene013973:CDS | 40.0% |
| ! | TCTGTGCCTGATGATGATAA+TGG | + | chr7.2:19351631-19351650 | MS.gene013973:CDS | 40.0% |
| !! | ACAGATGGATTTCTGGAATC+CGG | - | chr7.2:19352886-19352905 | None:intergenic | 40.0% |
| !! | ATCTTTCTTTGTCGCTTTGG+GGG | + | chr7.2:19352167-19352186 | MS.gene013973:intron | 40.0% |
| !!! | TCCATTTTCAGAGGCATCTT+CGG | - | chr7.2:19353505-19353524 | None:intergenic | 40.0% |
| AACGGAAGAAAGACAGCTCT+TGG | + | chr7.2:19353298-19353317 | MS.gene013973:CDS | 45.0% | |
| AAGAAAGCCCCTTCATCCAA+AGG | - | chr7.2:19352952-19352971 | None:intergenic | 45.0% | |
| ACTCTCTGTCGATCTTCTGA+AGG | + | chr7.2:19352134-19352153 | MS.gene013973:CDS | 45.0% | |
| AGCCGAATCATCTGAACACT+TGG | - | chr7.2:19353655-19353674 | None:intergenic | 45.0% | |
| AGCTCTTGGCACTCAAACTA+AGG | + | chr7.2:19353312-19353331 | MS.gene013973:CDS | 45.0% | |
| CATGAAGAAAAACGAGGCTG+TGG | + | chr7.2:19353396-19353415 | MS.gene013973:CDS | 45.0% | |
| CATGTTGCTACAGTCTGACT+CGG | + | chr7.2:19352074-19352093 | MS.gene013973:intron | 45.0% | |
| CATTCAGCGAAAAGCCAATG+TGG | + | chr7.2:19353477-19353496 | MS.gene013973:CDS | 45.0% | |
| CGGAAATCACAATCGGCAAT+GGG | + | chr7.2:19353945-19353964 | MS.gene013973:CDS | 45.0% | |
| CTCTTGAAGTCTTCGCTTAG+TGG | - | chr7.2:19353688-19353707 | None:intergenic | 45.0% | |
| CTGTCTTTCTTCCGTTGTCA+CGG | - | chr7.2:19353294-19353313 | None:intergenic | 45.0% | |
| GAACCGTAACAACGAAAGCT+AGG | - | chr7.2:19353182-19353201 | None:intergenic | 45.0% | |
| GCAGTCAACTGAGATTGGAA+AGG | + | chr7.2:19352270-19352289 | MS.gene013973:intron | 45.0% | |
| GGAAATCACAATCGGCAATG+GGG | + | chr7.2:19353946-19353965 | MS.gene013973:CDS | 45.0% | |
| TAATTGCAGCCAAGAGGCAA+AGG | + | chr7.2:19353851-19353870 | MS.gene013973:intron | 45.0% | |
| TGAGAGTTCGTGCTAGTTGA+CGG | - | chr7.2:19352333-19352352 | None:intergenic | 45.0% | |
| TTCGATGGCATGGATGATGA+TGG | + | chr7.2:19353120-19353139 | MS.gene013973:CDS | 45.0% | |
| TTGGCACTCAAACTAAGGAG+AGG | + | chr7.2:19353317-19353336 | MS.gene013973:CDS | 45.0% | |
| ! | ACGGCTGTTTCATTAGATGC+CGG | - | chr7.2:19353349-19353368 | None:intergenic | 45.0% |
| ! | CATTGCCGATTGTGATTTCC+GGG | - | chr7.2:19353946-19353965 | None:intergenic | 45.0% |
| ! | CCATTGCCGATTGTGATTTC+CGG | - | chr7.2:19353947-19353966 | None:intergenic | 45.0% |
| ! | TGCTGCTTCTGATTGTCCAA+AGG | + | chr7.2:19351522-19351541 | MS.gene013973:CDS | 45.0% |
| ! | TTCTAGTGGATGGAAAGAGC+TGG | + | chr7.2:19352688-19352707 | MS.gene013973:intron | 45.0% |
| ! | TTTGTTGTCCTTGGCAGTGA+CGG | - | chr7.2:19353368-19353387 | None:intergenic | 45.0% |
| !!! | AACTTGCTGCTGAGGTTTTG+AGG | + | chr7.2:19351815-19351834 | MS.gene013973:CDS | 45.0% |
| !!! | GTGCTGACTTTTGTTGTCCT+TGG | - | chr7.2:19353377-19353396 | None:intergenic | 45.0% |
| AAAGCCCCTTCATCCAAAGG+AGG | - | chr7.2:19352949-19352968 | None:intergenic | 50.0% | |
| AATTCTACCTGCGACAGGTG+TGG | - | chr7.2:19352741-19352760 | None:intergenic | 50.0% | |
| AGAAAAACGAGGCTGTGGTG+AGG | + | chr7.2:19353401-19353420 | MS.gene013973:CDS | 50.0% | |
| AGTCAGGGTCACTTGATCAG+TGG | + | chr7.2:19351437-19351456 | MS.gene013973:CDS | 50.0% | |
| CAAAGCAAGGGTCTGTCCAA+CGG | + | chr7.2:19353905-19353924 | MS.gene013973:CDS | 50.0% | |
| CCGGAAATCACAATCGGCAA+TGG | + | chr7.2:19353944-19353963 | MS.gene013973:CDS | 50.0% | |
| CCTTCATCCAAAGGAGGTGA+CGG | - | chr7.2:19352943-19352962 | None:intergenic | 50.0% | |
| CGTCACCTCCTTTGGATGAA+GGG | + | chr7.2:19352941-19352960 | MS.gene013973:CDS | 50.0% | |
| CTTCATCCAAAGGAGGTGAC+GGG | - | chr7.2:19352942-19352961 | None:intergenic | 50.0% | |
| GAAAGAGCTGGTCAATGCGT+GGG | + | chr7.2:19352700-19352719 | MS.gene013973:CDS | 50.0% | |
| GAGGCCTAATAAACCGATGG+CGG | + | chr7.2:19353420-19353439 | MS.gene013973:CDS | 50.0% | |
| GCTTTCTTTGTTGCCCCAAC+TGG | + | chr7.2:19352964-19352983 | MS.gene013973:CDS | 50.0% | |
| GGTGAGGCCTAATAAACCGA+TGG | + | chr7.2:19353417-19353436 | MS.gene013973:CDS | 50.0% | |
| GTCACCTCCTTTGGATGAAG+GGG | + | chr7.2:19352942-19352961 | MS.gene013973:CDS | 50.0% | |
| TGCTAGCAAAGAGAGCAAGG+TGG | + | chr7.2:19351690-19351709 | MS.gene013973:CDS | 50.0% | |
| ! | AGCTTCAGAAGAAGGCACAC+CGG | + | chr7.2:19352864-19352883 | MS.gene013973:intron | 50.0% |
| ! | GCCGAAGATGCCTCTGAAAA+TGG | + | chr7.2:19353501-19353520 | MS.gene013973:CDS | 50.0% |
| ! | TCGTTGTAAGGGGTGTGAGA+AGG | + | chr7.2:19351600-19351619 | MS.gene013973:CDS | 50.0% |
| ! | TGCTGTTTGAGTCTCTGAGG+AGG | + | chr7.2:19352097-19352116 | MS.gene013973:CDS | 50.0% |
| !! | ACATCTTGCTGGGCATTGAG+AGG | - | chr7.2:19353550-19353569 | None:intergenic | 50.0% |
| !! | AGAGCAAGGTGGATTGCAGT+AGG | + | chr7.2:19351701-19351720 | MS.gene013973:CDS | 50.0% |
| !! | GAGCAAGGTGGATTGCAGTA+GGG | + | chr7.2:19351702-19351721 | MS.gene013973:CDS | 50.0% |
| !! | GCAATCACAACTTGCTGCTG+AGG | + | chr7.2:19351807-19351826 | MS.gene013973:CDS | 50.0% |
| !! | TCAGCCGCCATCGGTTTATT+AGG | - | chr7.2:19353427-19353446 | None:intergenic | 50.0% |
| AGGCATCTTCGGCTCCACAT+TGG | - | chr7.2:19353494-19353513 | None:intergenic | 55.0% | |
| CACAATCGGCAATGGGGCAA+CGG | + | chr7.2:19353952-19353971 | MS.gene013973:CDS | 55.0% | |
| CAGGGTCACTTGATCAGTGG+AGG | + | chr7.2:19351440-19351459 | MS.gene013973:CDS | 55.0% | |
| CCGTCACCTCCTTTGGATGA+AGG | + | chr7.2:19352940-19352959 | MS.gene013973:CDS | 55.0% | |
| CGTTGGACAGACCCTTGCTT+TGG | - | chr7.2:19353907-19353926 | None:intergenic | 55.0% | |
| GGAAAGAGCTGGTCAATGCG+TGG | + | chr7.2:19352699-19352718 | MS.gene013973:CDS | 55.0% | |
| GGGTGCTAGCAAAGAGAGCA+AGG | + | chr7.2:19351687-19351706 | MS.gene013973:CDS | 55.0% | |
| TCAACAACCACACCTGTCGC+AGG | + | chr7.2:19352731-19352750 | MS.gene013973:CDS | 55.0% | |
| TGAAACAGCCGTCACTGCCA+AGG | + | chr7.2:19353357-19353376 | MS.gene013973:CDS | 55.0% | |
| ! | AAACCGATGGCGGCTGATAC+TGG | + | chr7.2:19353430-19353449 | MS.gene013973:CDS | 55.0% |
| !! | CGGTGCTGTTTGAGTCTCTG+AGG | + | chr7.2:19352094-19352113 | MS.gene013973:CDS | 55.0% |
| !! | GGGCATTGAGAGGCCTCTTA+GGG | - | chr7.2:19353540-19353559 | None:intergenic | 55.0% |
| !! | TGGGCATTGAGAGGCCTCTT+AGG | - | chr7.2:19353541-19353560 | None:intergenic | 55.0% |
| AGGACTCCCGTCACCTCCTT+TGG | + | chr7.2:19352933-19352952 | MS.gene013973:CDS | 60.0% | |
| CGACCAGTATCAGCCGCCAT+CGG | - | chr7.2:19353436-19353455 | None:intergenic | 60.0% | |
| GCTGGTCAATGCGTGGGTGA+AGG | + | chr7.2:19352706-19352725 | MS.gene013973:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 19351433 | 19353984 | 19351433 | ID=MS.gene013973 |
| chr7.2 | mRNA | 19351433 | 19353984 | 19351433 | ID=MS.gene013973.t1;Parent=MS.gene013973 |
| chr7.2 | exon | 19351433 | 19351870 | 19351433 | ID=MS.gene013973.t1.exon1;Parent=MS.gene013973.t1 |
| chr7.2 | CDS | 19351433 | 19351870 | 19351433 | ID=cds.MS.gene013973.t1;Parent=MS.gene013973.t1 |
| chr7.2 | exon | 19352087 | 19352155 | 19352087 | ID=MS.gene013973.t1.exon2;Parent=MS.gene013973.t1 |
| chr7.2 | CDS | 19352087 | 19352155 | 19352087 | ID=cds.MS.gene013973.t1;Parent=MS.gene013973.t1 |
| chr7.2 | exon | 19352274 | 19352356 | 19352274 | ID=MS.gene013973.t1.exon3;Parent=MS.gene013973.t1 |
| chr7.2 | CDS | 19352274 | 19352356 | 19352274 | ID=cds.MS.gene013973.t1;Parent=MS.gene013973.t1 |
| chr7.2 | exon | 19352694 | 19352752 | 19352694 | ID=MS.gene013973.t1.exon4;Parent=MS.gene013973.t1 |
| chr7.2 | CDS | 19352694 | 19352752 | 19352694 | ID=cds.MS.gene013973.t1;Parent=MS.gene013973.t1 |
| chr7.2 | exon | 19352866 | 19353005 | 19352866 | ID=MS.gene013973.t1.exon5;Parent=MS.gene013973.t1 |
| chr7.2 | CDS | 19352866 | 19353005 | 19352866 | ID=cds.MS.gene013973.t1;Parent=MS.gene013973.t1 |
| chr7.2 | exon | 19353117 | 19353144 | 19353117 | ID=MS.gene013973.t1.exon6;Parent=MS.gene013973.t1 |
| chr7.2 | CDS | 19353117 | 19353144 | 19353117 | ID=cds.MS.gene013973.t1;Parent=MS.gene013973.t1 |
| chr7.2 | exon | 19353260 | 19353567 | 19353260 | ID=MS.gene013973.t1.exon7;Parent=MS.gene013973.t1 |
| chr7.2 | CDS | 19353260 | 19353567 | 19353260 | ID=cds.MS.gene013973.t1;Parent=MS.gene013973.t1 |
| chr7.2 | exon | 19353648 | 19353729 | 19353648 | ID=MS.gene013973.t1.exon8;Parent=MS.gene013973.t1 |
| chr7.2 | CDS | 19353648 | 19353729 | 19353648 | ID=cds.MS.gene013973.t1;Parent=MS.gene013973.t1 |
| chr7.2 | exon | 19353860 | 19353984 | 19353860 | ID=MS.gene013973.t1.exon9;Parent=MS.gene013973.t1 |
| chr7.2 | CDS | 19353860 | 19353984 | 19353860 | ID=cds.MS.gene013973.t1;Parent=MS.gene013973.t1 |
| Gene Sequence |
| Protein sequence |
