Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014009.t1 | XP_003625012.1 | 100 | 482 | 0 | 0 | 1 | 482 | 1 | 482 | 1.40E-229 | 805.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014009.t1 | Q2HW56 | 100.0 | 482 | 0 | 0 | 1 | 482 | 1 | 482 | 3.4e-232 | 805.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014009.t1 | V7CXS4 | 89.8 | 482 | 36 | 5 | 1 | 478 | 1 | 473 | 1.2e-198 | 702.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014009.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014009.t1 | MTR_7g090020 | 100.000 | 482 | 0 | 0 | 1 | 482 | 1 | 482 | 0.0 | 993 |
| MS.gene014009.t1 | MTR_1g051025 | 79.208 | 505 | 69 | 8 | 1 | 482 | 1 | 492 | 0.0 | 727 |
| MS.gene014009.t1 | MTR_5g090770 | 34.239 | 368 | 212 | 9 | 24 | 386 | 66 | 408 | 2.36e-52 | 183 |
| MS.gene014009.t1 | MTR_5g090770 | 34.239 | 368 | 212 | 9 | 24 | 386 | 66 | 408 | 1.82e-51 | 184 |
| MS.gene014009.t1 | MTR_2g028950 | 35.156 | 384 | 222 | 9 | 6 | 386 | 44 | 403 | 7.91e-51 | 181 |
| MS.gene014009.t1 | MTR_2g028950 | 35.156 | 384 | 222 | 9 | 6 | 386 | 44 | 403 | 3.43e-50 | 180 |
| MS.gene014009.t1 | MTR_2g039880 | 30.376 | 372 | 216 | 7 | 24 | 388 | 65 | 400 | 4.14e-33 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014009.t1 | AT2G41370 | 78.893 | 488 | 76 | 10 | 3 | 478 | 4 | 476 | 0.0 | 744 |
| MS.gene014009.t1 | AT3G57130 | 75.625 | 480 | 82 | 8 | 2 | 476 | 4 | 453 | 0.0 | 713 |
| MS.gene014009.t1 | AT3G57130 | 75.301 | 166 | 33 | 2 | 2 | 162 | 4 | 166 | 2.32e-83 | 255 |
| MS.gene014009.t1 | AT4G19660 | 31.880 | 367 | 208 | 7 | 25 | 386 | 56 | 385 | 5.30e-46 | 169 |
| MS.gene014009.t1 | AT4G19660 | 31.880 | 367 | 208 | 7 | 25 | 386 | 56 | 385 | 7.53e-46 | 169 |
| MS.gene014009.t1 | AT5G45110 | 30.990 | 384 | 234 | 8 | 6 | 386 | 40 | 395 | 4.44e-42 | 158 |
| MS.gene014009.t1 | AT5G45110 | 30.990 | 384 | 234 | 8 | 6 | 386 | 40 | 395 | 7.46e-42 | 156 |
| MS.gene014009.t1 | AT1G64280 | 29.132 | 357 | 221 | 6 | 32 | 386 | 73 | 399 | 7.96e-33 | 132 |
| MS.gene014009.t1 | AT4G26120 | 29.640 | 361 | 209 | 9 | 33 | 386 | 76 | 398 | 1.26e-31 | 128 |
| MS.gene014009.t1 | AT4G26120 | 29.640 | 361 | 209 | 9 | 33 | 386 | 77 | 399 | 1.36e-31 | 128 |
Find 119 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATAGAAAATCTGAAGTT+AGG | 0.230108 | 7.2:+18648389 | None:intergenic |
| GATGCGAAGCTCTTCGATTT+TGG | 0.235029 | 7.2:+18648825 | None:intergenic |
| TGTGGGCCAGACCCACCTTC+TGG | 0.259914 | 7.2:-18650556 | MS.gene014009:CDS |
| ATGATGGTGGTGAGGCATTA+AGG | 0.333824 | 7.2:+18648780 | None:intergenic |
| AACAAGACATGCACCAACTA+TGG | 0.344045 | 7.2:-18648927 | MS.gene014009:CDS |
| CTAATGCTTCATCAAGGTTT+AGG | 0.354695 | 7.2:+18648635 | None:intergenic |
| AAGCACAACCTTAGTTTGTT+TGG | 0.359212 | 7.2:+18648334 | None:intergenic |
| GGAGATGGTCTCACCGGATA+TGG | 0.367743 | 7.2:-18648491 | MS.gene014009:CDS |
| TGCAGCCGATGTTAACTTCC+CGG | 0.370396 | 7.2:-18648551 | MS.gene014009:CDS |
| CAACCACGGTCACCACAATT+AGG | 0.374903 | 7.2:+18650379 | None:intergenic |
| CCATCAACTGTTCTCACATT+CGG | 0.388403 | 7.2:+18648439 | None:intergenic |
| AACTTCCCGGCTGGTCCAAC+GGG | 0.394050 | 7.2:-18648538 | MS.gene014009:CDS |
| CATCAACTGTTCTCACATTC+GGG | 0.411634 | 7.2:+18648440 | None:intergenic |
| CTATTCAAAGGTGCTGTCCC+TGG | 0.412212 | 7.2:-18648373 | MS.gene014009:CDS |
| CTGCAATTCTCAACGGCATA+AGG | 0.421725 | 7.2:+18648607 | None:intergenic |
| AGAAGTTGTGAAAGCCTTGT+TGG | 0.425240 | 7.2:-18648581 | MS.gene014009:CDS |
| TGTTATTGTTGTTGTGGCTA+TGG | 0.425330 | 7.2:+18648176 | None:intergenic |
| GAGATCTTAGTGAGTCTTCA+AGG | 0.426128 | 7.2:+18650713 | None:intergenic |
| GGGTTGACTCGGTTTCCTGA+TGG | 0.427587 | 7.2:+18650526 | None:intergenic |
| GAATAGAAAATCTGAAGTTA+GGG | 0.433840 | 7.2:+18648390 | None:intergenic |
| TCGTAACCAACTGAGTTAAC+TGG | 0.436058 | 7.2:+18650475 | None:intergenic |
| AGTACTTCAAGAATGGATTC+TGG | 0.438677 | 7.2:-18648106 | MS.gene014009:CDS |
| GGTTGACTCGGTTTCCTGAT+GGG | 0.440013 | 7.2:+18650527 | None:intergenic |
| AACACCAGACCTAGCTGAAC+CGG | 0.442219 | 7.2:+18650501 | None:intergenic |
| AGCAATACAGCCACCATATC+CGG | 0.442702 | 7.2:+18648478 | None:intergenic |
| TTCTTCAGAAAATTCTTCTG+TGG | 0.443436 | 7.2:-18650574 | MS.gene014009:CDS |
| CTAGTGAAACTCATGGTAAT+GGG | 0.452837 | 7.2:-18648664 | MS.gene014009:CDS |
| GCTAGTGAAACTCATGGTAA+TGG | 0.456091 | 7.2:-18648665 | MS.gene014009:CDS |
| TCTAATCCAGAAGGTGGGTC+TGG | 0.456640 | 7.2:+18650550 | None:intergenic |
| CATTAAGGAGCGGCGTGATA+AGG | 0.463719 | 7.2:+18648795 | None:intergenic |
| GGTTCAATGTGAGTTAATCC+AGG | 0.466615 | 7.2:+18648355 | None:intergenic |
| GTCTTCAAGGTCGGCTGCAG+CGG | 0.467472 | 7.2:+18648735 | None:intergenic |
| GTTATACCAGTTAACTCAGT+TGG | 0.472537 | 7.2:-18650481 | MS.gene014009:CDS |
| TCCCACCTTGTAGCAAAATC+AGG | 0.472615 | 7.2:-18648895 | MS.gene014009:CDS |
| AATCCATGTTATTGTTGTTG+TGG | 0.476042 | 7.2:+18648170 | None:intergenic |
| TCAAATGAGTACTTCAAGAA+TGG | 0.477419 | 7.2:-18648113 | MS.gene014009:CDS |
| GGTCGGCTGCAGCGGTGAGA+TGG | 0.490105 | 7.2:+18648743 | None:intergenic |
| CTTGTTATGTCAAGGGAAGA+AGG | 0.491332 | 7.2:-18648289 | MS.gene014009:CDS |
| GCCGATGTTAACTTCCCGGC+TGG | 0.496241 | 7.2:-18648547 | MS.gene014009:CDS |
| AGTTGATGGTGTTACACCCT+TGG | 0.497853 | 7.2:-18648425 | MS.gene014009:CDS |
| ATTGTGGTGACCGTGGTTGT+TGG | 0.504368 | 7.2:-18650375 | MS.gene014009:CDS |
| TAACTTCCCGGCTGGTCCAA+CGG | 0.512321 | 7.2:-18648539 | MS.gene014009:CDS |
| ACAACAATAACATGGATTCA+AGG | 0.512387 | 7.2:-18648165 | MS.gene014009:CDS |
| TCTTCAGAAAATTCTTCTGT+GGG | 0.516918 | 7.2:-18650573 | MS.gene014009:CDS |
| ACGCTTGTCCGTTGATGAGA+AGG | 0.520055 | 7.2:+18650671 | None:intergenic |
| AAACAAACTAAGGTTGTGCT+TGG | 0.520870 | 7.2:-18648332 | MS.gene014009:CDS |
| CCGAATGTGAGAACAGTTGA+TGG | 0.521071 | 7.2:-18648439 | MS.gene014009:CDS |
| CCTTCTGGATTAGACCCATC+AGG | 0.521120 | 7.2:-18650541 | MS.gene014009:CDS |
| ACATTGAACCAAACAAACTA+AGG | 0.522706 | 7.2:-18648342 | MS.gene014009:CDS |
| GCTACATATTGCAGCGGAGA+TGG | 0.524554 | 7.2:-18648506 | MS.gene014009:CDS |
| TGCTACAAGGTGGGAACATG+TGG | 0.531996 | 7.2:+18648903 | None:intergenic |
| CTGCAGCTCTTGTTATGTCA+AGG | 0.533449 | 7.2:-18648297 | MS.gene014009:CDS |
| TAGGGTTCTTAGAATGTCCA+AGG | 0.536805 | 7.2:+18648408 | None:intergenic |
| CCATCCGGTTCAGCTAGGTC+TGG | 0.539454 | 7.2:-18650505 | MS.gene014009:CDS |
| GGAAACCGAGTCAACCCATC+CGG | 0.539988 | 7.2:-18650520 | MS.gene014009:CDS |
| GGTCGTGATGGTGAGGATGA+TGG | 0.543235 | 7.2:+18648764 | None:intergenic |
| TACTTAAACCTTCTCATCAA+CGG | 0.546164 | 7.2:-18650679 | MS.gene014009:CDS |
| ATGTATCATCATCACTCTCA+TGG | 0.548599 | 7.2:-18648043 | MS.gene014009:CDS |
| AGGTTGGTGTATCTTAACCT+TGG | 0.550322 | 7.2:-18648145 | MS.gene014009:CDS |
| CTTGCAGCCGCTAGATACTT+CGG | 0.551437 | 7.2:-18650310 | MS.gene014009:CDS |
| TCACATTCGGGTCAGCGTGA+TGG | 0.551477 | 7.2:+18648452 | None:intergenic |
| CTGAACCGGATGGGTTGACT+CGG | 0.552813 | 7.2:+18650515 | None:intergenic |
| TATTGTTGTTGTGGCTATGG+TGG | 0.553140 | 7.2:+18648179 | None:intergenic |
| CAATAACATGGATTCAAGGT+TGG | 0.554832 | 7.2:-18648161 | MS.gene014009:CDS |
| GGCCTAGGTTCATGTTTCTG+AGG | 0.555362 | 7.2:+18650400 | None:intergenic |
| TGCAGCGGAGATGGTCTCAC+CGG | 0.562963 | 7.2:-18648497 | MS.gene014009:CDS |
| GTGATGATGATAATACTCAC+AGG | 0.563231 | 7.2:-18648084 | MS.gene014009:CDS |
| AAACTCATGGTAATGGGAGA+AGG | 0.568060 | 7.2:-18648658 | MS.gene014009:CDS |
| ACAGCTTGCATTGCTCACTC+AGG | 0.569799 | 7.2:-18650281 | MS.gene014009:intron |
| GTAATGCTAATGCTTCATCA+AGG | 0.571238 | 7.2:+18648629 | None:intergenic |
| GTTCAATGTGAGTTAATCCA+GGG | 0.571864 | 7.2:+18648356 | None:intergenic |
| GTGAAAGCCTTGTTGGAACT+CGG | 0.572326 | 7.2:-18648574 | MS.gene014009:CDS |
| ATGCTTCAGTTTCTGTACAG+TGG | 0.576559 | 7.2:-18650439 | MS.gene014009:CDS |
| TTTCATTACATCTTCAATCG+AGG | 0.580013 | 7.2:+18648969 | None:intergenic |
| CTCGACGTCTGAGGAGTCGA+GGG | 0.584832 | 7.2:+18648687 | None:intergenic |
| TGCAGCTCTTGTTATGTCAA+GGG | 0.587236 | 7.2:-18648296 | MS.gene014009:CDS |
| AAGAGCAAGATCAACGGCTG+AGG | 0.588511 | 7.2:+18650339 | None:intergenic |
| CGGTCACCACAATTAGGCCT+AGG | 0.589003 | 7.2:+18650385 | None:intergenic |
| TTCTCTACTGCAATTCTCAA+CGG | 0.590267 | 7.2:+18648600 | None:intergenic |
| TCAACCCATCCGGTTCAGCT+AGG | 0.592108 | 7.2:-18650510 | MS.gene014009:CDS |
| CTAAGATGCATCTGTGTGCG+TGG | 0.593852 | 7.2:+18650611 | None:intergenic |
| TAAGGAGCGGCGTGATAAGG+AGG | 0.595576 | 7.2:+18648798 | None:intergenic |
| GGGAACATGTGGTCCATAGT+TGG | 0.598309 | 7.2:+18648914 | None:intergenic |
| GATGGGTCTAATCCAGAAGG+TGG | 0.598545 | 7.2:+18650544 | None:intergenic |
| ACAGAAACAACTAGCGAGCA+TGG | 0.599468 | 7.2:-18649001 | MS.gene014009:intron |
| AGTTAACTCAGTTGGTTACG+AGG | 0.607152 | 7.2:-18650473 | MS.gene014009:CDS |
| GATGGTCTCACCGGATATGG+TGG | 0.607668 | 7.2:-18648488 | MS.gene014009:CDS |
| CGAGGGCTCGTCTCATCCGA+CGG | 0.607669 | 7.2:+18648704 | None:intergenic |
| CAGCGGTGAGATGGTCGTGA+TGG | 0.610483 | 7.2:+18648752 | None:intergenic |
| CCAGACCTAGCTGAACCGGA+TGG | 0.611566 | 7.2:+18650505 | None:intergenic |
| GCTCGACGTCTGAGGAGTCG+AGG | 0.612628 | 7.2:+18648686 | None:intergenic |
| AGATCTTAGTGAGTCTTCAA+GGG | 0.612991 | 7.2:+18650714 | None:intergenic |
| TTTCACTAGCTCGACGTCTG+AGG | 0.613557 | 7.2:+18648678 | None:intergenic |
| TCTTCATTCATATTATGATG+AGG | 0.620406 | 7.2:+18648205 | None:intergenic |
| CCTGATGGGTCTAATCCAGA+AGG | 0.623455 | 7.2:+18650541 | None:intergenic |
| CAGACCTAGCTGAACCGGAT+GGG | 0.623790 | 7.2:+18650506 | None:intergenic |
| TGGTGAGGATGATGGTGGTG+AGG | 0.629304 | 7.2:+18648772 | None:intergenic |
| ATGAGAGTGATGATGATACA+TGG | 0.631388 | 7.2:+18648045 | None:intergenic |
| CGTGATGGTGAGGATGATGG+TGG | 0.631651 | 7.2:+18648767 | None:intergenic |
| CGTCGAGCTAGTGAAACTCA+TGG | 0.635542 | 7.2:-18648671 | MS.gene014009:CDS |
| TAGCCACAACAACAATAACA+TGG | 0.640552 | 7.2:-18648173 | MS.gene014009:CDS |
| CATGAACCTAGGCCTAATTG+TGG | 0.646688 | 7.2:-18650391 | MS.gene014009:CDS |
| GGCTGCACCGAGTTCCAACA+AGG | 0.646855 | 7.2:+18648567 | None:intergenic |
| TCATTTGAGTATTAGCACCA+AGG | 0.650291 | 7.2:+18648128 | None:intergenic |
| GTGAGATGGTCGTGATGGTG+AGG | 0.655300 | 7.2:+18648757 | None:intergenic |
| ATGGGTCTAATCCAGAAGGT+GGG | 0.656727 | 7.2:+18650545 | None:intergenic |
| ATCTCCGCTGCAATATGTAG+CGG | 0.657846 | 7.2:+18648508 | None:intergenic |
| AGTATCAAGAGCAAGATCAA+CGG | 0.660445 | 7.2:+18650333 | None:intergenic |
| AGGGTTCTTAGAATGTCCAA+GGG | 0.662287 | 7.2:+18648409 | None:intergenic |
| TTCAACTCCGAAGTATCTAG+CGG | 0.662542 | 7.2:+18650303 | None:intergenic |
| TTCCTCAGAAACATGAACCT+AGG | 0.668829 | 7.2:-18650402 | MS.gene014009:CDS |
| AACTCCGCTACATATTGCAG+CGG | 0.669845 | 7.2:-18648512 | MS.gene014009:CDS |
| GGTGGTGAGGCATTAAGGAG+CGG | 0.674544 | 7.2:+18648785 | None:intergenic |
| AATGTGTATGCCAACAACCA+CGG | 0.675672 | 7.2:+18650365 | None:intergenic |
| TGATGATGATAATACTCACA+GGG | 0.685503 | 7.2:-18648083 | MS.gene014009:CDS |
| ACCAGCCGGGAAGTTAACAT+CGG | 0.692763 | 7.2:+18648546 | None:intergenic |
| TTGAAGACCAGAAAATCCGT+CGG | 0.696642 | 7.2:-18648720 | MS.gene014009:CDS |
| AGGCCTAATTGTGGTGACCG+TGG | 0.704495 | 7.2:-18650382 | MS.gene014009:CDS |
| GAAACAACTAGCGAGCATGG+TGG | 0.736366 | 7.2:-18648998 | MS.gene014009:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAGGAATTTTTTTAT+AGG | - | chr7.2:18649635-18649654 | MS.gene014009:intron | 10.0% |
| !! | AAAACAATAATAAAGAGAAA+AGG | + | chr7.2:18648505-18648524 | None:intergenic | 15.0% |
| !! | ATCACAAATTAACAAAAATA+TGG | + | chr7.2:18649120-18649139 | None:intergenic | 15.0% |
| !! | TATGGAAAAAATAAAATCAA+AGG | + | chr7.2:18649102-18649121 | None:intergenic | 15.0% |
| !!! | CATCAATTTTTTAATGAAAT+AGG | - | chr7.2:18648767-18648786 | MS.gene014009:CDS | 15.0% |
| !!! | AACATTGATGCATTTTTTAT+AGG | - | chr7.2:18649621-18649640 | MS.gene014009:intron | 20.0% |
| !!! | ATGTTTTTTATCTGTCTTTA+CGG | + | chr7.2:18649049-18649068 | None:intergenic | 20.0% |
| ! | AAAAAACTACATTTCATGCA+AGG | + | chr7.2:18649486-18649505 | None:intergenic | 25.0% |
| ! | AAAAACTACATTTCATGCAA+GGG | + | chr7.2:18649485-18649504 | None:intergenic | 25.0% |
| ! | AAAGGAATCAATTAATGTGA+CGG | + | chr7.2:18649084-18649103 | None:intergenic | 25.0% |
| ! | AATTTAGAAACTCATTCTAG+TGG | + | chr7.2:18649230-18649249 | None:intergenic | 25.0% |
| ! | ATTTAGAAACTCATTCTAGT+GGG | + | chr7.2:18649229-18649248 | None:intergenic | 25.0% |
| ! | ATTTCATGTTATGTATGTAC+TGG | - | chr7.2:18649153-18649172 | MS.gene014009:intron | 25.0% |
| ! | CAATAATAAAGAGAAAAGGA+AGG | + | chr7.2:18648501-18648520 | None:intergenic | 25.0% |
| ! | GACAGTAGAATTAATTAATG+AGG | + | chr7.2:18648983-18649002 | None:intergenic | 25.0% |
| ! | TCAACAATAGATAGATAACT+TGG | - | chr7.2:18648863-18648882 | MS.gene014009:CDS | 25.0% |
| ! | TCTTCATTCATATTATGATG+AGG | + | chr7.2:18650546-18650565 | None:intergenic | 25.0% |
| ! | TTCTCTACTACACTTATTAA+TGG | + | chr7.2:18648530-18648549 | None:intergenic | 25.0% |
| !! | ACTTCAGATTTTCTATTCAA+AGG | - | chr7.2:18650363-18650382 | MS.gene014009:CDS | 25.0% |
| !! | CTATTTAAAACCTAATTGCT+TGG | - | chr7.2:18649579-18649598 | MS.gene014009:intron | 25.0% |
| !! | GAATAGAAAATCTGAAGTTA+GGG | + | chr7.2:18650361-18650380 | None:intergenic | 25.0% |
| !! | TGAATAGAAAATCTGAAGTT+AGG | + | chr7.2:18650362-18650381 | None:intergenic | 25.0% |
| !!! | ATTTGGTCTTAAAGAAGAAA+AGG | - | chr7.2:18649336-18649355 | MS.gene014009:intron | 25.0% |
| !!! | ATTTTGGCTATGATATCAAT+AGG | + | chr7.2:18649910-18649929 | None:intergenic | 25.0% |
| !!! | CATATATAATAGCATTGATG+CGG | + | chr7.2:18649551-18649570 | None:intergenic | 25.0% |
| !!! | TTTGGTCTTAAAGAAGAAAA+GGG | - | chr7.2:18649337-18649356 | MS.gene014009:intron | 25.0% |
| !!! | TTTTGGCTATGATATCAATA+GGG | + | chr7.2:18649909-18649928 | None:intergenic | 25.0% |
| !!! | TTTTTGTTAATTAATGGGTG+AGG | - | chr7.2:18648711-18648730 | MS.gene014009:CDS | 25.0% |
| ACAACAATAACATGGATTCA+AGG | - | chr7.2:18650583-18650602 | MS.gene014009:CDS | 30.0% | |
| ACATTGAACCAAACAAACTA+AGG | - | chr7.2:18650406-18650425 | MS.gene014009:CDS | 30.0% | |
| ATACATTCACTTTCCTCATT+TGG | - | chr7.2:18649319-18649338 | MS.gene014009:intron | 30.0% | |
| ATCTATCTATTGTTGATCGA+TGG | + | chr7.2:18648859-18648878 | None:intergenic | 30.0% | |
| ATGAGGAAAGTGAATGTATT+TGG | + | chr7.2:18649318-18649337 | None:intergenic | 30.0% | |
| ATGTATGTACTGGAAATTAG+AGG | - | chr7.2:18649163-18649182 | MS.gene014009:intron | 30.0% | |
| CAATAGATAGATAACTTGGT+TGG | - | chr7.2:18648867-18648886 | MS.gene014009:CDS | 30.0% | |
| GAAAGAGAGTTAGACATAAA+TGG | + | chr7.2:18649364-18649383 | None:intergenic | 30.0% | |
| GAAGACACAAGATCAAATAA+TGG | + | chr7.2:18648900-18648919 | None:intergenic | 30.0% | |
| TACTTAAACCTTCTCATCAA+CGG | - | chr7.2:18648069-18648088 | MS.gene014009:CDS | 30.0% | |
| TCAAATGAGTACTTCAAGAA+TGG | - | chr7.2:18650635-18650654 | MS.gene014009:CDS | 30.0% | |
| TCTATCTATTGTTGATCGAT+GGG | + | chr7.2:18648858-18648877 | None:intergenic | 30.0% | |
| TCTCTTTCATTTACCAAATG+AGG | - | chr7.2:18649376-18649395 | MS.gene014009:intron | 30.0% | |
| TCTTCAGAAAATTCTTCTGT+GGG | - | chr7.2:18648175-18648194 | MS.gene014009:CDS | 30.0% | |
| TGAGGAAAGTGAATGTATTT+GGG | + | chr7.2:18649317-18649336 | None:intergenic | 30.0% | |
| TTCTTCAGAAAATTCTTCTG+TGG | - | chr7.2:18648174-18648193 | MS.gene014009:CDS | 30.0% | |
| TTTCATTACATCTTCAATCG+AGG | + | chr7.2:18649782-18649801 | None:intergenic | 30.0% | |
| ! | AATCCATGTTATTGTTGTTG+TGG | + | chr7.2:18650581-18650600 | None:intergenic | 30.0% |
| ! | TGATGATGATAATACTCACA+GGG | - | chr7.2:18650665-18650684 | MS.gene014009:CDS | 30.0% |
| !! | TTCTTCTTTAAGACCAAATG+AGG | + | chr7.2:18649335-18649354 | None:intergenic | 30.0% |
| AAACAAACTAAGGTTGTGCT+TGG | - | chr7.2:18650416-18650435 | MS.gene014009:CDS | 35.0% | |
| AGATCTTAGTGAGTCTTCAA+GGG | + | chr7.2:18648037-18648056 | None:intergenic | 35.0% | |
| AGTATCAAGAGCAAGATCAA+CGG | + | chr7.2:18648418-18648437 | None:intergenic | 35.0% | |
| ATGTATCATCATCACTCTCA+TGG | - | chr7.2:18650705-18650724 | MS.gene014009:CDS | 35.0% | |
| CAATAACATGGATTCAAGGT+TGG | - | chr7.2:18650587-18650606 | MS.gene014009:CDS | 35.0% | |
| CGATTTCATTCCAAGCAATT+AGG | + | chr7.2:18649592-18649611 | None:intergenic | 35.0% | |
| CTAATGCTTCATCAAGGTTT+AGG | + | chr7.2:18650116-18650135 | None:intergenic | 35.0% | |
| CTAGTGAAACTCATGGTAAT+GGG | - | chr7.2:18650084-18650103 | MS.gene014009:intron | 35.0% | |
| GTAATGCTAATGCTTCATCA+AGG | + | chr7.2:18650122-18650141 | None:intergenic | 35.0% | |
| GTTATACCAGTTAACTCAGT+TGG | - | chr7.2:18648267-18648286 | MS.gene014009:CDS | 35.0% | |
| GTTCAATGTGAGTTAATCCA+GGG | + | chr7.2:18650395-18650414 | None:intergenic | 35.0% | |
| TAGCCACAACAACAATAACA+TGG | - | chr7.2:18650575-18650594 | MS.gene014009:CDS | 35.0% | |
| TCATTTGAGTATTAGCACCA+AGG | + | chr7.2:18650623-18650642 | None:intergenic | 35.0% | |
| TTCTCTACTGCAATTCTCAA+CGG | + | chr7.2:18650151-18650170 | None:intergenic | 35.0% | |
| ! | ACATGACAGTTTTCTCGATT+TGG | - | chr7.2:18649193-18649212 | MS.gene014009:intron | 35.0% |
| ! | AGATGTTTTGCAAGTACTTC+TGG | + | chr7.2:18649886-18649905 | None:intergenic | 35.0% |
| ! | AGTACTTCAAGAATGGATTC+TGG | - | chr7.2:18650642-18650661 | MS.gene014009:CDS | 35.0% |
| ! | ATGAGAGTGATGATGATACA+TGG | + | chr7.2:18650706-18650725 | None:intergenic | 35.0% |
| ! | ATGTTTTGCAAGTACTTCTG+GGG | + | chr7.2:18649884-18649903 | None:intergenic | 35.0% |
| ! | GAGGAATGAGAATGAGATTT+TGG | - | chr7.2:18648730-18648749 | MS.gene014009:CDS | 35.0% |
| ! | GATGTTTTGCAAGTACTTCT+GGG | + | chr7.2:18649885-18649904 | None:intergenic | 35.0% |
| ! | GTGATGATGATAATACTCAC+AGG | - | chr7.2:18650664-18650683 | MS.gene014009:CDS | 35.0% |
| ! | TGTTATTGTTGTTGTGGCTA+TGG | + | chr7.2:18650575-18650594 | None:intergenic | 35.0% |
| !! | AAGCACAACCTTAGTTTGTT+TGG | + | chr7.2:18650417-18650436 | None:intergenic | 35.0% |
| !!! | GTGGTTTTGTTATCCTCATT+TGG | + | chr7.2:18649392-18649411 | None:intergenic | 35.0% |
| !!! | TCGTATGTTTTTTGGGTCTT+GGG | - | chr7.2:18648631-18648650 | MS.gene014009:CDS | 35.0% |
| !!! | TGACCAGTCGTATGTTTTTT+GGG | - | chr7.2:18648624-18648643 | MS.gene014009:CDS | 35.0% |
| !!! | TGTCTTGTTTTCTTGATGCT+AGG | + | chr7.2:18649810-18649829 | None:intergenic | 35.0% |
| !!! | TTCCACAGTTACTGGTTTTT+GGG | - | chr7.2:18648657-18648676 | MS.gene014009:CDS | 35.0% |
| !!! | TTTCCACAGTTACTGGTTTT+TGG | - | chr7.2:18648656-18648675 | MS.gene014009:CDS | 35.0% |
| AACAAGACATGCACCAACTA+TGG | - | chr7.2:18649821-18649840 | MS.gene014009:intron | 40.0% | |
| AATGTGTATGCCAACAACCA+CGG | + | chr7.2:18648386-18648405 | None:intergenic | 40.0% | |
| AGACCCAAAAAACATACGAC+TGG | + | chr7.2:18648630-18648649 | None:intergenic | 40.0% | |
| AGCAAAGAGAAGAAAGTGAG+TGG | + | chr7.2:18649411-18649430 | None:intergenic | 40.0% | |
| AGGGTTCTTAGAATGTCCAA+GGG | + | chr7.2:18650342-18650361 | None:intergenic | 40.0% | |
| AGTTAACTCAGTTGGTTACG+AGG | - | chr7.2:18648275-18648294 | MS.gene014009:CDS | 40.0% | |
| ATGCTTCAGTTTCTGTACAG+TGG | - | chr7.2:18648309-18648328 | MS.gene014009:CDS | 40.0% | |
| CATCAACTGTTCTCACATTC+GGG | + | chr7.2:18650311-18650330 | None:intergenic | 40.0% | |
| CATGCAAGGGAAAAGAGTTT+GGG | + | chr7.2:18649472-18649491 | None:intergenic | 40.0% | |
| CCATCAACTGTTCTCACATT+CGG | + | chr7.2:18650312-18650331 | None:intergenic | 40.0% | |
| GAGATCTTAGTGAGTCTTCA+AGG | + | chr7.2:18648038-18648057 | None:intergenic | 40.0% | |
| GCTAGTGAAACTCATGGTAA+TGG | - | chr7.2:18650083-18650102 | MS.gene014009:intron | 40.0% | |
| GGTTCAATGTGAGTTAATCC+AGG | + | chr7.2:18650396-18650415 | None:intergenic | 40.0% | |
| TAGGGTTCTTAGAATGTCCA+AGG | + | chr7.2:18650343-18650362 | None:intergenic | 40.0% | |
| TCAAGCAACAAACTGTGAAG+AGG | + | chr7.2:18649019-18649038 | None:intergenic | 40.0% | |
| TCATGCAAGGGAAAAGAGTT+TGG | + | chr7.2:18649473-18649492 | None:intergenic | 40.0% | |
| TCGTAACCAACTGAGTTAAC+TGG | + | chr7.2:18648276-18648295 | None:intergenic | 40.0% | |
| TTCCCAAAAACCAGTAACTG+TGG | + | chr7.2:18648662-18648681 | None:intergenic | 40.0% | |
| TTCCTCAGAAACATGAACCT+AGG | - | chr7.2:18648346-18648365 | MS.gene014009:CDS | 40.0% | |
| TTGAAGACCAGAAAATCCGT+CGG | - | chr7.2:18650028-18650047 | MS.gene014009:intron | 40.0% | |
| TTGGGAATTTCCACAGTTAC+TGG | - | chr7.2:18648649-18648668 | MS.gene014009:CDS | 40.0% | |
| ! | ACCTGATTTTGCTACAAGGT+GGG | + | chr7.2:18649857-18649876 | None:intergenic | 40.0% |
| ! | AGAAGTTGTGAAAGCCTTGT+TGG | - | chr7.2:18650167-18650186 | MS.gene014009:intron | 40.0% |
| ! | AGGGAAAAGAGTTTGGGATT+TGG | + | chr7.2:18649466-18649485 | None:intergenic | 40.0% |
| ! | CTTGTTATGTCAAGGGAAGA+AGG | - | chr7.2:18650459-18650478 | MS.gene014009:CDS | 40.0% |
| ! | GAAGACCTGATTTTGCTACA+AGG | + | chr7.2:18649861-18649880 | None:intergenic | 40.0% |
| ! | TATTGTTGTTGTGGCTATGG+TGG | + | chr7.2:18650572-18650591 | None:intergenic | 40.0% |
| ! | TGCAGCTCTTGTTATGTCAA+GGG | - | chr7.2:18650452-18650471 | MS.gene014009:CDS | 40.0% |
| ! | TGTTTTGCAAGTACTTCTGG+GGG | + | chr7.2:18649883-18649902 | None:intergenic | 40.0% |
| ! | TTCAACTCCGAAGTATCTAG+CGG | + | chr7.2:18648448-18648467 | None:intergenic | 40.0% |
| !! | AAACTCATGGTAATGGGAGA+AGG | - | chr7.2:18650090-18650109 | MS.gene014009:intron | 40.0% |
| !! | AGGTTGGTGTATCTTAACCT+TGG | - | chr7.2:18650603-18650622 | MS.gene014009:CDS | 40.0% |
| !! | GATTTTCTGGTCTTCAAGGT+CGG | + | chr7.2:18650025-18650044 | None:intergenic | 40.0% |
| !!! | AGTTACTGGTTTTTGGGAAC+TGG | - | chr7.2:18648663-18648682 | MS.gene014009:CDS | 40.0% |
| !!! | GTCGTATGTTTTTTGGGTCT+TGG | - | chr7.2:18648630-18648649 | MS.gene014009:CDS | 40.0% |
| !!! | GTGACCAGTCGTATGTTTTT+TGG | - | chr7.2:18648623-18648642 | MS.gene014009:CDS | 40.0% |
| !!! | GTTACTGGTTTTTGGGAACT+GGG | - | chr7.2:18648664-18648683 | MS.gene014009:CDS | 40.0% |
| AACTCCGCTACATATTGCAG+CGG | - | chr7.2:18650236-18650255 | MS.gene014009:intron | 45.0% | |
| ACAGAAACAACTAGCGAGCA+TGG | - | chr7.2:18649747-18649766 | MS.gene014009:intron | 45.0% | |
| AGCAATACAGCCACCATATC+CGG | + | chr7.2:18650273-18650292 | None:intergenic | 45.0% | |
| ATCTCCGCTGCAATATGTAG+CGG | + | chr7.2:18650243-18650262 | None:intergenic | 45.0% | |
| ATGGGTCTAATCCAGAAGGT+GGG | + | chr7.2:18648206-18648225 | None:intergenic | 45.0% | |
| CATGAACCTAGGCCTAATTG+TGG | - | chr7.2:18648357-18648376 | MS.gene014009:CDS | 45.0% | |
| CCGAATGTGAGAACAGTTGA+TGG | - | chr7.2:18650309-18650328 | MS.gene014009:CDS | 45.0% | |
| CTGCAATTCTCAACGGCATA+AGG | + | chr7.2:18650144-18650163 | None:intergenic | 45.0% | |
| TCCCACCTTGTAGCAAAATC+AGG | - | chr7.2:18649853-18649872 | MS.gene014009:intron | 45.0% | |
| ! | CTGCAGCTCTTGTTATGTCA+AGG | - | chr7.2:18650451-18650470 | MS.gene014009:CDS | 45.0% |
| ! | GACCTGATTTTGCTACAAGG+TGG | + | chr7.2:18649858-18649877 | None:intergenic | 45.0% |
| ! | GATGCGAAGCTCTTCGATTT+TGG | + | chr7.2:18649926-18649945 | None:intergenic | 45.0% |
| !! | AGTTGATGGTGTTACACCCT+TGG | - | chr7.2:18650323-18650342 | MS.gene014009:CDS | 45.0% |
| !! | ATGATGGTGGTGAGGCATTA+AGG | + | chr7.2:18649971-18649990 | None:intergenic | 45.0% |
| !! | GACGGATTTTCTGGTCTTCA+AGG | + | chr7.2:18650029-18650048 | None:intergenic | 45.0% |
| !! | GTGAAAGCCTTGTTGGAACT+CGG | - | chr7.2:18650174-18650193 | MS.gene014009:intron | 45.0% |
| !!! | ATTATTTTTTGTTAATTAAT+GGG | - | chr7.2:18648706-18648725 | MS.gene014009:CDS | 5.0% |
| !!! | TATTATTTTTTGTTAATTAA+TGG | - | chr7.2:18648705-18648724 | MS.gene014009:CDS | 5.0% |
| AACACCAGACCTAGCTGAAC+CGG | + | chr7.2:18648250-18648269 | None:intergenic | 50.0% | |
| AAGAGCAAGATCAACGGCTG+AGG | + | chr7.2:18648412-18648431 | None:intergenic | 50.0% | |
| ACAGCTTGCATTGCTCACTC+AGG | - | chr7.2:18648467-18648486 | MS.gene014009:CDS | 50.0% | |
| ACCAGCCGGGAAGTTAACAT+CGG | + | chr7.2:18650205-18650224 | None:intergenic | 50.0% | |
| ATTGTGGTGACCGTGGTTGT+TGG | - | chr7.2:18648373-18648392 | MS.gene014009:CDS | 50.0% | |
| CAACCACGGTCACCACAATT+AGG | + | chr7.2:18648372-18648391 | None:intergenic | 50.0% | |
| CATTAAGGAGCGGCGTGATA+AGG | + | chr7.2:18649956-18649975 | None:intergenic | 50.0% | |
| CGTCGAGCTAGTGAAACTCA+TGG | - | chr7.2:18650077-18650096 | MS.gene014009:intron | 50.0% | |
| CTAAGATGCATCTGTGTGCG+TGG | + | chr7.2:18648140-18648159 | None:intergenic | 50.0% | |
| CTTGCAGCCGCTAGATACTT+CGG | - | chr7.2:18648438-18648457 | MS.gene014009:CDS | 50.0% | |
| GAAACAACTAGCGAGCATGG+TGG | - | chr7.2:18649750-18649769 | MS.gene014009:intron | 50.0% | |
| GATGGGTCTAATCCAGAAGG+TGG | + | chr7.2:18648207-18648226 | None:intergenic | 50.0% | |
| GCTACATATTGCAGCGGAGA+TGG | - | chr7.2:18650242-18650261 | MS.gene014009:intron | 50.0% | |
| GGGAACATGTGGTCCATAGT+TGG | + | chr7.2:18649837-18649856 | None:intergenic | 50.0% | |
| TCTAATCCAGAAGGTGGGTC+TGG | + | chr7.2:18648201-18648220 | None:intergenic | 50.0% | |
| TGCAGCCGATGTTAACTTCC+CGG | - | chr7.2:18650197-18650216 | MS.gene014009:intron | 50.0% | |
| TGCTACAAGGTGGGAACATG+TGG | + | chr7.2:18649848-18649867 | None:intergenic | 50.0% | |
| TTTCACTAGCTCGACGTCTG+AGG | + | chr7.2:18650073-18650092 | None:intergenic | 50.0% | |
| ! | ACGCTTGTCCGTTGATGAGA+AGG | + | chr7.2:18648080-18648099 | None:intergenic | 50.0% |
| ! | CCTGATGGGTCTAATCCAGA+AGG | + | chr7.2:18648210-18648229 | None:intergenic | 50.0% |
| ! | CCTTCTGGATTAGACCCATC+AGG | - | chr7.2:18648207-18648226 | MS.gene014009:CDS | 50.0% |
| ! | GGCCTAGGTTCATGTTTCTG+AGG | + | chr7.2:18648351-18648370 | None:intergenic | 50.0% |
| !! | CTATTCAAAGGTGCTGTCCC+TGG | - | chr7.2:18650375-18650394 | MS.gene014009:CDS | 50.0% |
| !! | CTGGTTTTTGGGAACTGGGA+AGG | - | chr7.2:18648668-18648687 | MS.gene014009:CDS | 50.0% |
| !! | GACGTTGTTTTCAGCGTCGA+AGG | - | chr7.2:18648105-18648124 | MS.gene014009:CDS | 50.0% |
| !! | GGTTGACTCGGTTTCCTGAT+GGG | + | chr7.2:18648224-18648243 | None:intergenic | 50.0% |
| !! | GTCTCATCCGACGGATTTTC+TGG | + | chr7.2:18650038-18650057 | None:intergenic | 50.0% |
| !! | TGTAGCGGAGTTTTACCCGT+TGG | + | chr7.2:18650228-18650247 | None:intergenic | 50.0% |
| AGGCCTAATTGTGGTGACCG+TGG | - | chr7.2:18648366-18648385 | MS.gene014009:CDS | 55.0% | |
| CAGACCTAGCTGAACCGGAT+GGG | + | chr7.2:18648245-18648264 | None:intergenic | 55.0% | |
| CGGTCACCACAATTAGGCCT+AGG | + | chr7.2:18648366-18648385 | None:intergenic | 55.0% | |
| CGTGCACTAGCTGACTGTGT+TGG | + | chr7.2:18649282-18649301 | None:intergenic | 55.0% | |
| GATGGTCTCACCGGATATGG+TGG | - | chr7.2:18650260-18650279 | MS.gene014009:intron | 55.0% | |
| GGAAACCGAGTCAACCCATC+CGG | - | chr7.2:18648228-18648247 | MS.gene014009:CDS | 55.0% | |
| GGAGATGGTCTCACCGGATA+TGG | - | chr7.2:18650257-18650276 | MS.gene014009:intron | 55.0% | |
| TAAGGAGCGGCGTGATAAGG+AGG | + | chr7.2:18649953-18649972 | None:intergenic | 55.0% | |
| TCAACCCATCCGGTTCAGCT+AGG | - | chr7.2:18648238-18648257 | MS.gene014009:CDS | 55.0% | |
| TCACATTCGGGTCAGCGTGA+TGG | + | chr7.2:18650299-18650318 | None:intergenic | 55.0% | |
| ! | CGTGATGGTGAGGATGATGG+TGG | + | chr7.2:18649984-18650003 | None:intergenic | 55.0% |
| ! | GGTCGTGATGGTGAGGATGA+TGG | + | chr7.2:18649987-18650006 | None:intergenic | 55.0% |
| ! | GGTGGTGAGGCATTAAGGAG+CGG | + | chr7.2:18649966-18649985 | None:intergenic | 55.0% |
| ! | GTGAGATGGTCGTGATGGTG+AGG | + | chr7.2:18649994-18650013 | None:intergenic | 55.0% |
| ! | GTTTTACCCGTTGGACCAGC+CGG | + | chr7.2:18650219-18650238 | None:intergenic | 55.0% |
| ! | TAACTTCCCGGCTGGTCCAA+CGG | - | chr7.2:18650209-18650228 | MS.gene014009:intron | 55.0% |
| ! | TTTTACCCGTTGGACCAGCC+GGG | + | chr7.2:18650218-18650237 | None:intergenic | 55.0% |
| !! | CTGAACCGGATGGGTTGACT+CGG | + | chr7.2:18648236-18648255 | None:intergenic | 55.0% |
| !! | GGGTTGACTCGGTTTCCTGA+TGG | + | chr7.2:18648225-18648244 | None:intergenic | 55.0% |
| !! | TGGTGAGGATGATGGTGGTG+AGG | + | chr7.2:18649979-18649998 | None:intergenic | 55.0% |
| CAGCGGTGAGATGGTCGTGA+TGG | + | chr7.2:18649999-18650018 | None:intergenic | 60.0% | |
| CCAGACCTAGCTGAACCGGA+TGG | + | chr7.2:18648246-18648265 | None:intergenic | 60.0% | |
| CCATCCGGTTCAGCTAGGTC+TGG | - | chr7.2:18648243-18648262 | MS.gene014009:CDS | 60.0% | |
| CTCGACGTCTGAGGAGTCGA+GGG | + | chr7.2:18650064-18650083 | None:intergenic | 60.0% | |
| GCCGATGTTAACTTCCCGGC+TGG | - | chr7.2:18650201-18650220 | MS.gene014009:intron | 60.0% | |
| GGCTGCACCGAGTTCCAACA+AGG | + | chr7.2:18650184-18650203 | None:intergenic | 60.0% | |
| GTCTTCAAGGTCGGCTGCAG+CGG | + | chr7.2:18650016-18650035 | None:intergenic | 60.0% | |
| TGCAGCGGAGATGGTCTCAC+CGG | - | chr7.2:18650251-18650270 | MS.gene014009:intron | 60.0% | |
| ! | AACTTCCCGGCTGGTCCAAC+GGG | - | chr7.2:18650210-18650229 | MS.gene014009:intron | 60.0% |
| CGAGGGCTCGTCTCATCCGA+CGG | + | chr7.2:18650047-18650066 | None:intergenic | 65.0% | |
| GCTCGACGTCTGAGGAGTCG+AGG | + | chr7.2:18650065-18650084 | None:intergenic | 65.0% | |
| TGTGGGCCAGACCCACCTTC+TGG | - | chr7.2:18648192-18648211 | MS.gene014009:CDS | 65.0% | |
| GGTCGGCTGCAGCGGTGAGA+TGG | + | chr7.2:18650008-18650027 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 18648030 | 18650740 | 18648030 | ID=MS.gene014009 |
| chr7.2 | mRNA | 18648030 | 18650740 | 18648030 | ID=MS.gene014009.t1;Parent=MS.gene014009 |
| chr7.2 | exon | 18650282 | 18650740 | 18650282 | ID=MS.gene014009.t1.exon1;Parent=MS.gene014009.t1 |
| chr7.2 | CDS | 18650282 | 18650740 | 18650282 | ID=cds.MS.gene014009.t1;Parent=MS.gene014009.t1 |
| chr7.2 | exon | 18648030 | 18649019 | 18648030 | ID=MS.gene014009.t1.exon2;Parent=MS.gene014009.t1 |
| chr7.2 | CDS | 18648030 | 18649019 | 18648030 | ID=cds.MS.gene014009.t1;Parent=MS.gene014009.t1 |
| Gene Sequence |
| Protein sequence |
