AlfalfaGEDB | MS.gene014011

M. sativa cultivar XinJiangDaYe / MS.gene014011

KEGG: -
GO: -
PFAM: PF19239.2

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014011.t1	XP_003625016.2	94.7	379	20	0	1	379	1	379	1.20E-207	732.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014011.t1	F4K933	42.1	382	182	8	7	378	17	369	6.0e-75	282.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014011.t1	G7KQU4	94.7	379	20	0	1	379	1	379	8.6e-208	732.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene014011.t1	TF	HRT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014011.t1	MTR_7g090060	94.723	379	20	0	1	379	1	379	0.0	747
MS.gene014011.t1	MTR_6g092520	74.263	373	85	3	6	378	2	363	0.0	556
MS.gene014011.t1	MTR_6g092500	61.062	113	39	1	3	115	46	153	3.49e-42	145
MS.gene014011.t1	MTR_6g092480	44.715	123	42	1	125	247	9	105	5.13e-26	110
MS.gene014011.t1	MTR_6g092480	65.909	44	15	0	270	313	311	354	1.98e-11	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014011.t1	AT5G56780	42.010	388	186	9	1	378	11	369	4.98e-91	282
MS.gene014011.t1	AT5G56770	42.529	174	76	4	2	174	51	201	1.12e-35	131

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Find 109 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTGCCAGGAACATAA+AGG	0.395561	7.2:-18630662	MS.gene014011:CDS
AAACCACAACTATGCGATGA+GGG	0.622038	7.2:+18632271	None:intergenic
AAACTGGATGAAGCTGACAG+TGG	0.772229	7.2:-18631094	MS.gene014011:CDS
AAAGGTGCCAGGAACATAAA+GGG	0.538956	7.2:-18630661	MS.gene014011:CDS
AACCGGTTAAAGGAAGAAAA+AGG	0.410668	7.2:-18630679	MS.gene014011:CDS
AACCGGTTGTCTTCTACAAG+TGG	0.530917	7.2:+18630694	None:intergenic
AACGGGAAGGTCATTGTTTC+AGG	0.214002	7.2:-18632148	MS.gene014011:CDS
AACTATGCGATGAGGGTCAG+TGG	0.590571	7.2:+18632278	None:intergenic
AAGGTTGTGAATCCTGTATC+TGG	0.479106	7.2:+18632383	None:intergenic
AATGCTTTCTAATTCTGACT+TGG	0.501548	7.2:+18630847	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTGGACCCATTTAAAA+TGG	+	chr7.2:18632183-18632202	None:intergenic	30.0%
AATGCTTTCTAATTCTGACT+TGG	+	chr7.2:18633007-18633026	None:intergenic	30.0%
AATTAGCAGTGCTCATTTAA+AGG	-	chr7.2:18632004-18632023	MS.gene014011:intron	30.0%
AATTCATAGCTTAAGAATGG+AGG	+	chr7.2:18631988-18632007	None:intergenic	30.0%
AGCATTTGAAGAATATCATC+AGG	+	chr7.2:18632619-18632638	None:intergenic	30.0%
AGCCCAGAAAATTATCTAAA+TGG	+	chr7.2:18630886-18630905	None:intergenic	30.0%
ATGCTTTCTAATTCTGACTT+GGG	+	chr7.2:18633006-18633025	None:intergenic	30.0%
CATGAGAATGCTAAAATTTG+CGG	-	chr7.2:18632865-18632884	MS.gene014011:intron	30.0%
CTCAAATAAACACACATACA+CGG	-	chr7.2:18631063-18631082	MS.gene014011:CDS	30.0%
CTTCCCAATTGTTTATAGAT+GGG	-	chr7.2:18631742-18631761	MS.gene014011:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	18630631	18633242	18630631	ID=MS.gene014011
chr7.2	mRNA	18630631	18633242	18630631	ID=MS.gene014011.t1;Parent=MS.gene014011
chr7.2	exon	18633171	18633242	18633171	ID=MS.gene014011.t1.exon1;Parent=MS.gene014011.t1
chr7.2	CDS	18633171	18633242	18633171	ID=cds.MS.gene014011.t1;Parent=MS.gene014011.t1
chr7.2	exon	18632104	18632460	18632104	ID=MS.gene014011.t1.exon2;Parent=MS.gene014011.t1
chr7.2	CDS	18632104	18632460	18632104	ID=cds.MS.gene014011.t1;Parent=MS.gene014011.t1
chr7.2	exon	18630631	18631350	18630631	ID=MS.gene014011.t1.exon3;Parent=MS.gene014011.t1
chr7.2	CDS	18630631	18631350	18630631	ID=cds.MS.gene014011.t1;Parent=MS.gene014011.t1

Gene Sequence

>MS.gene014011

ATGGTCGTCAACAGATTGAAGCGGGAGCAATGTGACCGAACAAAACATGATTCTAGCTTCTCCCACTGGAAGGTTCATATCAATTTTCTATATATCTTTTCTATTGTTAATAATAATGTGTTGTGTTTCTTATGTTAATGTTTCTACGAATCTGAGGTAAATAGAGTCTTGTATTTATAAAATATGTGCCAGTGATGCCTAAAGCCTAATACTTCATTCTTTTAGTGATTATTGTTAGTGTTAATTCTCCTTCCATTTAGATAATTTTCTGGGCTGCCACTTTTTAAAGTTTTCAATTTATACTTTGAAGAAAAAGCTATTGATTGTATGATGGCGTAGTGCTTAAAGAGGATGTGTGATGTGTGTCAGACTAAAAAATCTCAAGAACAAGATATTTTTTTATTTGGTTATTGGCCCAGTGGCCAACACATGCTCAAATAAACACACATACACGGGGAGGGGGAAGTGTGTTGACCCGGGATCAAACCTGGGATTCCACGTAAAATGTCCTCAAAGCCAAACCACTAGACTCTAATAGCAAGGACGAAAAGAATTCATCTCTAAGTCATTGAATTGATGACAAAAAATTAATTGAATGAATAAGTTTTACATGAAACTGAGTTTATATACTCCATATTATAGTGAAGTTAACAACTAAGCTAAGTTGTTATTACTAAATAACTAAAGCCATAATAGAATGACGAAAACTAGTTCTTTCAACTGTACAAATCTGGTTACCTTCTTACCTTGGTTTGGTTGCTCGTGTTATAAACTGTTTTCAGATTCTTATCGGTCCTTCTGATTGGGAAGACTATTCCAAAGAAAAGGAAGGATCTACCAGATACAGGATTCACAACCTTCCTCAGAAATTGGGTCCGGGGGTGTACGAGCTTGGAGTAGCTGTGTCGCGTAGTAATCTGGGCCGTGAAATTTACAAGCTTGCCACTGACCCTCATCGCATAGTTGTGGTTTACCTTGGAAAAGCTGACAATGTGAGAGCAAGACTCCAGCGTTATGGCAGGAATGGAGCTCATTTGAATAACACTTGTATGTCAGATGACTCTTCTCTACGAACGGGAAGGTCATTGTTTCAGGAGATATTTTCACAAGGCTTCCCAATTGTTTATAGATGGGCTCCTGTAAGTACATATCTGATATTTCATTTGCATTTCAGATTTAATATCAAGATGATTGCAACTGAACATGTATTAATGGGTTCGGAAGTTAAGCTAGATGACTATTAGCTTCAGCATCTTAGGTTCGTTTCAAAAAAGTCATTGATTGGAAATGCACGTTATCATATGATAGTATAGGGTATAACTCAAAGGTTTTGGATAAATCAGATAAAATTTGACCTCCATTCTTAAGCTATGAATTAGCAGTGCTCATTTAAAGGCCTGAAATCTATGTAATTTAGGTTGTAATTTTAAGAGTTATGTTTGAATTTGAGTATATAGTGAAATACTAAACATATTTCATTTAATTCTTAGTCATAATTGAATGATCATTTCATTATTGTATCTAGATTGTTCTTAGAGCTAACCCAATTCCATTTTAAATGGGTCCAGTTTTGCTTTGGCCTGAAGTGCTGTGTATTGGGTTTGTTCAGTTCTAGAGATATGTTAGGATCCAAAAGTGACACAATCAAAATTTAGGACAAGGTTAGGGATAGCTATAACCCGTCTCTTGCTTGCCACTAGTCTATTATGATAATTCATATTTATGTCTATACCTAATGTCTCTGATGGAATTCAAAATCTACTGTTAATATGTGGTGTCGCATTTTACGAAATTTGGCACAAAATACATTTGCATCTTACACAAAAGATATATAAAAGTGCAATTTTTTGGAACTATAATGGTTTATCTGTGCAATGTTGTTTATTGAACAGATGCAAAACGAGGGAGATGCCCTGAGAACAGAATCTCAGCTGCTTAGTACATTTGATTATGCATGGAACACAATCAGCAATGGTACACGGAGGCCTGATGATATTCTTCAAATGCTCAACAAATTAGCTTCAGGCACTAGAACATTTTCAGATGTGGCCAAATTGCTTCTACCTTTCACCCAGAGGAAAGTGGGGATACCAATTAAATCAAGCAAGCTGCCTCTGACAGATGACAAACTGGATGAAGCTGACAGTGGCAGCTACAACGTCCTATCCCGTGTGTTCAAATTAAACAGGTCACGTCCTAGGATAGTTCAGGATACCACTGGTGGTAGTGCCACTCATGAGAATGCTAAAATTTGCGGAGTGATGTTGGCCGATGGTTCTATTTGTAAAAGGCCACCGGTTGAAAAAAGAGTGAGGTGTCCTGAACACAAAGGAATGAGAATAAATGCGTCCGCCGCCAAAGCAATCAGATCACCCAAGTCAGAATTAGAAAGCATTGTAGGTAATGCTTATAGGTACCAAAATGCCAGCCATGATGTAGAAGACCCTCCACAAAGAATGGTTAAGAGTCATGTTGATGAGGGTATCGCCAAAACCATTATGTGTGGAATCATCTTGGATGATGGATCCACTTGTAGAAGACAACCGGTTAAAGGAAGAAAAAGGTGCCAGGAACATAAAGGGAGGAGAATTCGTGCAAATTCGAAAAAATAA

Protein sequence

>MS.gene014011.t1

MVVNRLKREQCDRTKHDSSFSHWKILIGPSDWEDYSKEKEGSTRYRIHNLPQKLGPGVYELGVAVSRSNLGREIYKLATDPHRIVVVYLGKADNVRARLQRYGRNGAHLNNTCMSDDSSLRTGRSLFQEIFSQGFPIVYRWAPMQNEGDALRTESQLLSTFDYAWNTISNGTRRPDDILQMLNKLASGTRTFSDVAKLLLPFTQRKVGIPIKSSKLPLTDDKLDEADSGSYNVLSRVFKLNRSRPRIVQDTTGGSATHENAKICGVMLADGSICKRPPVEKRVRCPEHKGMRINASAAKAIRSPKSELESIVGNAYRYQNASHDVEDPPQRMVKSHVDEGIAKTIMCGIILDDGSTCRRQPVKGRKRCQEHKGRRIRANSKK