AlfalfaGEDB | MS.gene014025

M. sativa cultivar XinJiangDaYe / MS.gene014025

KEGG: K14492
GO: GO:0000160 GO:0007165 GO:0008150 GO:0009987 GO:0035556 GO:0050789 GO:0050794 GO:0065007
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014025.t1	XP_024626467.1	99.2	133	0	1	1	133	1	132	5.90E-66	261.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014025.t1	O80366	81.2	133	25	0	1	133	1	133	5.2e-55	216.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014025.t1	A0A072U1M0	99.2	133	0	1	1	133	1	132	4.3e-66	261.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene014025.t1	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014025.t1	MTR_7g490310	99.248	133	0	1	1	133	1	132	6.08e-94	278
MS.gene014025.t1	MTR_8g038620	78.195	133	27	1	1	133	1	131	3.66e-68	209
MS.gene014025.t1	MTR_3g015490	70.866	127	33	2	7	133	2	124	2.96e-55	176
MS.gene014025.t1	MTR_5g036480	61.364	132	44	3	3	133	9	134	1.39e-48	162
MS.gene014025.t1	MTR_6g007460	48.925	186	32	3	1	133	3	178	4.68e-48	159
MS.gene014025.t1	MTR_1g049100	64.286	126	37	2	8	133	7	124	1.24e-47	158
MS.gene014025.t1	MTR_3g078613	59.231	130	43	2	4	133	18	137	5.39e-47	156
MS.gene014025.t1	MTR_3g093860	59.677	124	42	3	10	133	19	134	2.14e-45	150
MS.gene014025.t1	MTR_3g078613	58.779	131	43	3	4	133	18	138	3.14e-45	152
MS.gene014025.t1	MTR_3g088630	58.696	138	44	4	6	133	19	153	7.82e-45	152

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014025.t1	AT3G57040	81.203	133	25	0	1	133	1	133	1.31e-73	226
MS.gene014025.t1	AT3G57040	81.203	133	25	0	1	133	1	133	1.31e-73	226
MS.gene014025.t1	AT2G41310	75.940	133	30	1	1	133	1	131	7.48e-68	211
MS.gene014025.t1	AT3G48100	59.542	131	44	2	3	133	19	140	2.02e-48	159
MS.gene014025.t1	AT1G59940	62.698	126	37	2	8	133	32	147	1.23e-47	159
MS.gene014025.t1	AT1G19050	59.524	126	41	1	8	133	23	138	9.51e-47	156
MS.gene014025.t1	AT3G56380	56.154	130	48	2	4	133	15	135	2.49e-46	153
MS.gene014025.t1	AT1G74890	60.317	126	40	2	8	133	17	132	2.79e-46	155
MS.gene014025.t1	AT2G40670	56.250	128	49	1	6	133	26	146	3.28e-46	153
MS.gene014025.t1	AT1G59940	62.698	126	37	2	8	133	124	239	5.62e-46	157

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Find 61 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCATAGCCTGTCATGCC+AGG	0.488050	7.2:-18445230	None:intergenic
AACAGTACCGCGCTTTGCAC+TGG	0.489795	7.2:-18447494	None:intergenic
AACTATACCTGATGATTGTT+AGG	0.391930	7.2:-18445028	None:intergenic
AACTGTTGTTTGACGATGTC+AGG	0.386145	7.2:-18448401	None:intergenic
ACTCCGAGAAGACTGAAAAT+TGG	0.325876	7.2:+18448368	MS.gene014025:CDS
AGAGAGACGATTGGCAAGGA+AGG	0.504204	7.2:-18447585	None:intergenic
AGAGTCACAGTTTCATGTTT+TGG	0.318671	7.2:+18444573	MS.gene014025:CDS
AGGGGAATTCTACGCTCTCT+TGG	0.449168	7.2:+18448247	MS.gene014025:intron
ATAACAGATTACTGTATGCC+TGG	0.512220	7.2:+18445212	MS.gene014025:CDS
ATAGAAAGGTCGTGCCGTCG+TGG	0.590783	7.2:+18447521	MS.gene014025:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATGCAACAAAAACTCA+AGG	+	chr7.2:18448151-18448170	MS.gene014025:intron	30.0%
AACATTTGATCTTCATCACA+TGG	-	chr7.2:18447173-18447192	None:intergenic	30.0%
AACTACGTTGTTTGAGAAAA+GGG	-	chr7.2:18445366-18445385	None:intergenic	30.0%
AACTATACCTGATGATTGTT+AGG	-	chr7.2:18445031-18445050	None:intergenic	30.0%
AAGAAAATCAAGGTAAGCTT+TGG	+	chr7.2:18445257-18445276	MS.gene014025:intron	30.0%
AAGATTCTCTCTGATATTAC+AGG	+	chr7.2:18445996-18446015	MS.gene014025:intron	30.0%
AATATACCATTCACTTGTGT+AGG	-	chr7.2:18447255-18447274	None:intergenic	30.0%
AATTTAAATGTGTAGGAGCA+TGG	+	chr7.2:18446754-18446773	MS.gene014025:intron	30.0%
ACAACGTAGTTAGATTCAAA+TGG	+	chr7.2:18445375-18445394	MS.gene014025:intron	30.0%
AGATAATGCAATATTCAGCA+CGG	-	chr7.2:18448023-18448042	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	18444559	18448439	18444559	ID=MS.gene014025
chr7.2	mRNA	18444559	18448439	18444559	ID=MS.gene014025.t1;Parent=MS.gene014025
chr7.2	exon	18444559	18444661	18444559	ID=MS.gene014025.t1.exon1;Parent=MS.gene014025.t1
chr7.2	CDS	18444559	18444661	18444559	ID=cds.MS.gene014025.t1;Parent=MS.gene014025.t1
chr7.2	exon	18444936	18445042	18444936	ID=MS.gene014025.t1.exon2;Parent=MS.gene014025.t1
chr7.2	CDS	18444936	18445042	18444936	ID=cds.MS.gene014025.t1;Parent=MS.gene014025.t1
chr7.2	exon	18445191	18445268	18445191	ID=MS.gene014025.t1.exon3;Parent=MS.gene014025.t1
chr7.2	CDS	18445191	18445268	18445191	ID=cds.MS.gene014025.t1;Parent=MS.gene014025.t1
chr7.2	exon	18446018	18446088	18446018	ID=MS.gene014025.t1.exon4;Parent=MS.gene014025.t1
chr7.2	CDS	18446018	18446088	18446018	ID=cds.MS.gene014025.t1;Parent=MS.gene014025.t1
chr7.2	exon	18446195	18446234	18446195	ID=MS.gene014025.t1.exon5;Parent=MS.gene014025.t1
chr7.2	CDS	18446195	18446234	18446195	ID=cds.MS.gene014025.t1;Parent=MS.gene014025.t1
chr7.2	exon	18447362	18447644	18447362	ID=MS.gene014025.t1.exon6;Parent=MS.gene014025.t1
chr7.2	CDS	18447362	18447644	18447362	ID=cds.MS.gene014025.t1;Parent=MS.gene014025.t1
chr7.2	exon	18448249	18448439	18448249	ID=MS.gene014025.t1.exon7;Parent=MS.gene014025.t1
chr7.2	CDS	18448249	18448439	18448249	ID=cds.MS.gene014025.t1;Parent=MS.gene014025.t1

Gene Sequence

>MS.gene014025

ATGGGAATGGCTGCAGAGTCACAGTTTCATGTTTTGGCTGTTGATGACAGCATCATAGATAGGAAGCTTATTGAGAGGCTTCTCAAAACATCTTCATATCAGGGTAACTTTTGAGGGCCAAATATAGCATAATCTGATGAACTTTTTTGGATCTTTTCCTTTCTTAAACACATAATCCATTATACTATGATAATGTTGTTTTTTTTTTTGACAAATACCATGTTAATGTTTTTTTTGGACACAAGTACTATGTTAATGTTTTTCTTTTTGGACAAATACTATGTTAATGTTTATTTATTTATTTTGGACAAATACTATGTTAATGTTATTATAACAGAATGAATGAATGAATGGACTTTTTGTTTTCACAATGGCAGTTACTACAGTTGATTCTGGTAGCAAGGCTTTAGAGTTTTTGGGTTTGTGTGAGAATGATGATGAGACCAACCCAAATACACCATCTGTATTTCCTAACAATCATCAGGTATAGTTTTGTTGTTGTACTCAAAAAAATGTGACAAGATTTTTATTTTTTTAATCACCTTGATGCAGTAACTTTTTCAACTTTATAATGTTAGATTAGATGGTTTTTTCTGGAATTCTGAAATTCCTTGGATTTTTGTGTTTTATAGGAAGTGGAGGTGAATCTTGTTATAACAGATTACTGTATGCCTGGCATGACAGGCTATGATTTGCTTAAGAAAATCAAGGTAAGCTTTGGTTTCCATTCCTGACTCATCTATATCTTTTAACCAATATTTATTGTCCACTTTAATCACTCTTTCTAGCTATAAGATTGTTTTTCCCTTTTCTCAAACAACGTAGTTAGATTCAAATGGTTAATGATCTTTGATATAAGTCAAATCGATCGGAAATATCCGAGTTTGGTCTATGCCTAAAACAATTATTGATCATGTCTTACTTATTTCTCATTTCTCAGCCGTACTTCATATTAGCAAGTCCCTTTTGTCTGAGATCAAAAAAATTACTTTTTGGTTTAACCATCCAGTTTTTAAAGGAAAAGAGTCTTTGCAATCCGGAGTTCGGTCGGGAATTAAGTCTAGTAAAAGCTTGTGCCAACCAGAATTCGATTTCGATTTCTCTTAAACAATATGTCTTTAAATGGAACTTTGAGAACATAAAATTTAGTAGGAAAAAAAAACTATAGATTCATTCTAATTTGGCAATTTGTTATTGCTGAAAGTTATCAACTTGGACTAGTTTTATTACTTGTACTCCAGCAATAATTCACCTGAATGCTTTTCAGTTTTCCACTGAAAACAAATCAGGTTCAATAGATCATCAAAAGATTTTGTTTCCAAAAAGGGCATACTTTTGTATATTGTAGTAACTAGATTTGTTTTTTATTGAAAAAACTGTTTGAGAATATCTGAAAATTCTGTGCAACACTTATTCAACCTGGAACCAAAGACTTATAAGATTCTCTCTGATATTACAGGAATCATCATCATTGAGAAACATACCAGTGGTGATTATGTCATCTGAAAATGTGCCTTCAAGAATTAATAGGTAATAAAATTTACAGTACATTATTTCATTTTATTTCTATTTTTCCACTTTGGTCATTTTAATTATATCAGAACTATATACTAATGAAATCTATCAAATGTAACAGATGCTTGGAGGAAGGAGCAGAAGAGTTTTTCTTGAAGCCTGTAAGGCTATCAGATTTAAACAAACTTAAACCTCACATGAAGAAAACCAAATTGAAAGATCCAAATCAAGAAACAGAACAAAAGATAGAAAATTCAGAAATTCTTGAAAATGAAGAACAGCATCAAGCATCAAAATCTCAACATTCACATTTAGAGTCAGAGTCACAAACACAGACACAGTTACAAGCACATTCAACTATAGATCAACAGCAACAATCACTACAACAAGCCAACAATAACAAGAGAAAGAGTGTGGAACAAAGTCTTTCATCTGAGACTGACAGAACAAGACCAAGATACAGTGGCATTGCTACTGTTGTATGATGATAAATCATTTGGCAAATAATTTTCTTGAATTTCAAAGTGTAATTCTTATTTAACTTTCTTGAAAAATTAAATATTAACTTGGGTGTTGGTTTATATAGGCTCTATAGGAGTGTAGTGTAGAGTTGTTCCCTGTAAACATTTCCTGGAAATATTCCCTTCCAATTTTGTTTCATATGAAAATGAAAAGAAAAAAATTTAAATGTGTAGGAGCATGGTTGTTTTCGGATTCTAGTGCTATAGACTTACATTGTCACCAGAAAATGAACTTTTTATATTAAAAAAGAAAACAGAAAATGAACTTTGATCATATATTTAATAGCATTATCAGTGCCCCGTGAGTTTAGCGACATGATTTTATGAAACTCCAAAATGTAGCTTTTGCCAAAATCTTGGTGCTTCATCATATCTCTTTCAATATCACCATCATTCTAACATGCATTTGGTAAATTATTTTAGTATATTTATAATAGTAATTTTGTCTTCAAACTGAAGTGTTCCAGAATAGGCTTAAGCCCATTCCATCGACGGACTAGATCAATAAGAAACATGCTATGGGGCTACACCTGCACTGACGGTATACATGAGCCGGTCAGTTATTGTTATCAGCTCCATGTGATGAAGATCAAATGTTGATCTGTAGATCATATCGGATTCCTTCAACGGGAATACACCCTATAACCTTGAAGGTCACCTACACAAGTGAATGGTATATTCACTTCTAATCTTAAAACCTTTCAGTCACTCGATCGCAAACTAAATTGATCATTAGACTGCTTGTACGTACACCACTCTCATTGAAGAGTTGCCATCGTCCATTGCTGCATCACCTCAACTCCGATCGTTGGTCTAGATTCAATTTGAATCGTTGGTGCCGCTCGAGGACAGATTCCTACAATCTCACCGCAAAACCCTTTGTTACAGATATGAGACGGCCAGTGCAAAGCGCGGTACTGTTCTACATAGAAAGGTCGTGCCGTCGTGGTTCATCTTCTCCTAAGTTTGCTGACGACACCACAACGTTGTCCTTCCTTGCCAATCGTCTCTCTGCTCAAGGATCAACTTGGTGGTCTAGATGGCAAGTCTGTACACCACAACCTAATCACATTGGTTGAAAAAAAAACACAAATGATAGATGAACACAATCAACGGATTGCTCACATTGAGAAAAACCAATAGCAGATCTCTGCCATCATCACCACTCAGCTTGAATCGCAATGATATCCCGACGAATAGCTTCAGCCTGAAGAAACAGTTAGATATGCTCCTCACTCCTCATCAGAGAGGTCACAAATATACGCTTAAACCATGAAATCCCAATAGGAAGAAACAGTTAGCCGATCTTGCAGGTACGTTGAGCTTCTGGTGACCTTTAGGAAGAAACAAATGAGGAGAACCGTGAAATCCATTCTTGGTGATTGATTTCAATTTGGTCTACAATTGTATCATCAACCGGCCCACCCGTGCTGAATATTGCATTATCTTTGTCAGCTCATCTCAAGATGAGCTGCCGTGCTGTGAATAATGAAATATCTACAATTGAAGGTGATCTCAAGGCATGACGGGTATGCTTTATGAACTCTCTAAAATCAAAAGATGCAACAAAAACTCAAGGTCGTCAACAAGCCAAGTAGCTTGAGAATATCTGAAGTTGCACCTAAACCCCAAGGCATTATCAAAGTAAACTAAGGGGAATTCTACGCTCTCTTGGAGCCAGAGCTTAGTGATGAAGTCGACAATGATGAAGAGGCGTTAGGCCCTGAGGCAAGAATGAAGCTAAAAAGACTAGTGCTAGACAGCAGAAAAAAGACTCCGAGAAGACTGAAAATTGGGGTCAATCTGCCTGACATCGTCAAACAACAGTTGACTTCCAGTCTTTAG

Protein sequence

>MS.gene014025.t1

MGMAAESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLCENDDETNPNTPSVFPNNHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFLKPSCHRPLLHHLNSDRWSRFNLNRWCRSRTDSYNLTAKPFVTDMRRPVQSAVLFYIERSCRRGSSSPKFADDTTTLSFLANRLSAQGSTWWSRWQVWEFYALLEPELSDEVDNDEEALGPEARMKLKRLVLDSRKKTPRRLKIGVNLPDIVKQQLTSSL