Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014037.t1 | XP_003625051.2 | 95.4 | 219 | 9 | 1 | 1 | 218 | 1 | 219 | 1.90E-107 | 398.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014037.t1 | Q9M1K1 | 44.6 | 224 | 106 | 7 | 7 | 218 | 6 | 223 | 6.5e-35 | 149.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014037.t1 | G7KRQ0 | 95.4 | 219 | 9 | 1 | 1 | 218 | 1 | 219 | 1.4e-107 | 398.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene014037.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014037.t1 | MTR_7g090410 | 95.434 | 219 | 9 | 1 | 1 | 218 | 1 | 219 | 1.65e-125 | 356 |
MS.gene014037.t1 | MTR_1g048720 | 58.772 | 228 | 74 | 7 | 1 | 218 | 1 | 218 | 2.41e-75 | 228 |
MS.gene014037.t1 | MTR_1g048720 | 58.772 | 228 | 74 | 7 | 1 | 218 | 1 | 218 | 3.64e-75 | 228 |
MS.gene014037.t1 | MTR_1g048750 | 56.034 | 232 | 74 | 6 | 1 | 222 | 1 | 214 | 6.81e-73 | 223 |
MS.gene014037.t1 | MTR_1g048720 | 58.333 | 228 | 74 | 8 | 1 | 218 | 1 | 217 | 9.09e-73 | 221 |
MS.gene014037.t1 | MTR_1g048720 | 58.333 | 228 | 74 | 8 | 1 | 218 | 1 | 217 | 1.07e-72 | 222 |
MS.gene014037.t1 | MTR_1g048710 | 57.456 | 228 | 68 | 7 | 1 | 218 | 1 | 209 | 1.50e-65 | 203 |
MS.gene014037.t1 | MTR_0007s0330 | 34.211 | 152 | 91 | 4 | 66 | 215 | 6 | 150 | 1.07e-11 | 61.6 |
MS.gene014037.t1 | MTR_0007s0330 | 32.121 | 165 | 103 | 4 | 66 | 228 | 18 | 175 | 1.27e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014037.t1 | AT3G56970 | 44.348 | 230 | 109 | 7 | 1 | 218 | 1 | 223 | 1.82e-50 | 165 |
MS.gene014037.t1 | AT3G56980 | 43.644 | 236 | 107 | 7 | 1 | 218 | 1 | 228 | 7.48e-42 | 143 |
MS.gene014037.t1 | AT2G41240 | 40.664 | 241 | 122 | 7 | 1 | 231 | 1 | 230 | 3.42e-41 | 141 |
MS.gene014037.t1 | AT2G41240 | 40.249 | 241 | 122 | 8 | 1 | 231 | 1 | 229 | 1.14e-38 | 134 |
MS.gene014037.t1 | AT5G04150 | 45.000 | 160 | 79 | 3 | 63 | 218 | 83 | 237 | 5.97e-36 | 127 |
MS.gene014037.t1 | AT5G04150 | 45.000 | 160 | 79 | 3 | 63 | 218 | 83 | 237 | 1.62e-35 | 127 |
Find 42 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTTCTTGGCCATAAGTTT+AGG | 0.279241 | 7.2:+18280279 | None:intergenic |
AGCATTGTGGTTAAGCTTCT+TGG | 0.288890 | 7.2:+18280266 | None:intergenic |
GCTTCTTGGCCATAAGTTTA+GGG | 0.303457 | 7.2:+18280280 | None:intergenic |
TCACTTCGTTCACTTCTTCC+CGG | 0.311784 | 7.2:-18280201 | MS.gene014037:CDS |
TCTTCTTCTTCTAAAACCTT+TGG | 0.334379 | 7.2:-18279048 | MS.gene014037:CDS |
TCAATCTCAACATGTTCCTT+TGG | 0.352411 | 7.2:+18280315 | None:intergenic |
GCCACCATCCCCTAAACTTA+TGG | 0.372270 | 7.2:-18280289 | MS.gene014037:CDS |
TTGATGTGTTTAGAAAATAA+TGG | 0.374175 | 7.2:-18279087 | MS.gene014037:CDS |
AAGACACGTGAAATTGTTAC+CGG | 0.393671 | 7.2:+18279339 | None:intergenic |
AAACATGGGATGGCTCTTAG+AGG | 0.417919 | 7.2:-18280424 | MS.gene014037:CDS |
TATTACCGTTTGATCTTCAC+CGG | 0.440214 | 7.2:+18280182 | None:intergenic |
GCACGGGTTAATTAGAAGCT+TGG | 0.441997 | 7.2:-18278588 | MS.gene014037:CDS |
GGGATGGCTCTTAGAGGAGT+TGG | 0.478368 | 7.2:-18280418 | MS.gene014037:CDS |
CTCAGATAGAGGAATCTTGT+AGG | 0.481665 | 7.2:+18279113 | None:intergenic |
TCTTCTTCTAAAACCTTTGG+AGG | 0.482465 | 7.2:-18279045 | MS.gene014037:CDS |
CACATCAAGATCTCAGATAG+AGG | 0.501569 | 7.2:+18279102 | None:intergenic |
ATGTTTGAGTATGAGAACTT+AGG | 0.501753 | 7.2:+18280441 | None:intergenic |
TTGGCCATAAGTTTAGGGGA+TGG | 0.512241 | 7.2:+18280285 | None:intergenic |
AGGAACATGTTGAGATTGAA+AGG | 0.537866 | 7.2:-18280311 | MS.gene014037:CDS |
GCCATAAGTTTAGGGGATGG+TGG | 0.542896 | 7.2:+18280288 | None:intergenic |
CTTCTAAAACCTTTGGAGGG+AGG | 0.546758 | 7.2:-18279041 | MS.gene014037:CDS |
TTTGAGTATGAGAACTTAGG+TGG | 0.557960 | 7.2:+18280444 | None:intergenic |
ACGTGTCTTAAAGTACATAC+CGG | 0.558220 | 7.2:-18279325 | MS.gene014037:CDS |
ACAAAAGCAGAATTGTAACT+TGG | 0.558897 | 7.2:+18279195 | None:intergenic |
CTTCTTCTAAAACCTTTGGA+GGG | 0.566421 | 7.2:-18279044 | MS.gene014037:CDS |
TCTTCCCGGTGAAGATCAAA+CGG | 0.568161 | 7.2:-18280187 | MS.gene014037:intron |
ATAGAAGAGCCTCCCTCCAA+AGG | 0.569392 | 7.2:+18279032 | None:intergenic |
GGTGAAGAGAATTGATGATA+CGG | 0.572582 | 7.2:+18280336 | None:intergenic |
CTTCTTGGCCATAAGTTTAG+GGG | 0.575873 | 7.2:+18280281 | None:intergenic |
AAGTTCTCATACTCAAACAT+GGG | 0.594178 | 7.2:-18280438 | MS.gene014037:CDS |
TCTCATACTCAAACATGGGA+TGG | 0.596383 | 7.2:-18280434 | MS.gene014037:CDS |
TTACCATAATAATATAGTGG+GGG | 0.598517 | 7.2:+18278547 | None:intergenic |
TACCATAATAATATAGTGGG+GGG | 0.599211 | 7.2:+18278548 | None:intergenic |
TAAGTTCTCATACTCAAACA+TGG | 0.607041 | 7.2:-18280439 | MS.gene014037:CDS |
GATTTACAAAAGCAAGTGCA+AGG | 0.608962 | 7.2:-18279303 | MS.gene014037:CDS |
TCATCAATTCTCTTCACCAA+AGG | 0.612543 | 7.2:-18280331 | MS.gene014037:CDS |
GGTTAATTAGAAGCTTGGAA+AGG | 0.644231 | 7.2:-18278583 | MS.gene014037:CDS |
TTGAGTATGAGAACTTAGGT+GGG | 0.650167 | 7.2:+18280445 | None:intergenic |
CAGTTAACAAAGAATCGCAA+AGG | 0.655004 | 7.2:-18279227 | MS.gene014037:CDS |
TTTACCATAATAATATAGTG+GGG | 0.658365 | 7.2:+18278546 | None:intergenic |
ATTACCGTTTGATCTTCACC+GGG | 0.685907 | 7.2:+18280183 | None:intergenic |
GATCACGTTCACTAGCATTG+TGG | 0.694395 | 7.2:+18280253 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GATATATTAATTAAAAGTTT+AGG | - | chr7.2:18280355-18280374 | MS.gene014037:CDS | 10.0% |
!!! | AAGCTATTTTTTAAAATGAT+AGG | - | chr7.2:18278941-18278960 | MS.gene014037:intron | 15.0% |
!!! | AATTTATTTTGCAAACATTT+TGG | + | chr7.2:18279237-18279256 | None:intergenic | 15.0% |
!!! | ATAGCTAATTATTCTTTTAA+AGG | - | chr7.2:18279366-18279385 | MS.gene014037:intron | 15.0% |
!!! | TTAATTAAAAGTTTAGGATT+TGG | - | chr7.2:18280361-18280380 | MS.gene014037:CDS | 15.0% |
!!! | TTTTGGTTAGATTTTTATTT+TGG | + | chr7.2:18279220-18279239 | None:intergenic | 15.0% |
!! | AAGCAGAAAAATAATCATTT+GGG | - | chr7.2:18280302-18280321 | MS.gene014037:CDS | 20.0% |
!! | GATACCAATTTATAGAAAAT+TGG | + | chr7.2:18278866-18278885 | None:intergenic | 20.0% |
!! | TTGATGTGTTTAGAAAATAA+TGG | - | chr7.2:18279919-18279938 | MS.gene014037:intron | 20.0% |
!!! | AGTTTTAATCTGACTTTTAT+TGG | - | chr7.2:18279098-18279117 | MS.gene014037:CDS | 20.0% |
!!! | TAACCTACTTTAAGAAAAAA+GGG | - | chr7.2:18279411-18279430 | MS.gene014037:intron | 20.0% |
!!! | TAGTACATATTTTAATAGCA+CGG | - | chr7.2:18280401-18280420 | MS.gene014037:CDS | 20.0% |
! | CCAATTTATAGAAAATTGGA+AGG | + | chr7.2:18278862-18278881 | None:intergenic | 25.0% |
! | CCCTAATTGTTTACTATTAA+GGG | - | chr7.2:18280137-18280156 | MS.gene014037:intron | 25.0% |
! | CCCTTAATAGTAAACAATTA+GGG | + | chr7.2:18280140-18280159 | None:intergenic | 25.0% |
! | GAAGCAGAAAAATAATCATT+TGG | - | chr7.2:18280301-18280320 | MS.gene014037:CDS | 25.0% |
! | TATGTGCAAAAAATTAGAGA+TGG | - | chr7.2:18279318-18279337 | MS.gene014037:CDS | 25.0% |
! | TCCCTTAATAGTAAACAATT+AGG | + | chr7.2:18280141-18280160 | None:intergenic | 25.0% |
! | TGACGTATTCATAATATGAA+TGG | - | chr7.2:18279541-18279560 | MS.gene014037:intron | 25.0% |
! | TTACCATAATAATATAGTGG+GGG | + | chr7.2:18280462-18280481 | None:intergenic | 25.0% |
!! | CCTTCCAATTTTCTATAAAT+TGG | - | chr7.2:18278859-18278878 | MS.gene014037:intron | 25.0% |
!! | GTAACCTACTTTAAGAAAAA+AGG | - | chr7.2:18279410-18279429 | MS.gene014037:intron | 25.0% |
!!! | AGTACATATTTTAATAGCAC+GGG | - | chr7.2:18280402-18280421 | MS.gene014037:CDS | 25.0% |
!!! | ATTTATTTTGCAATGTTTGC+AGG | - | chr7.2:18280217-18280236 | MS.gene014037:CDS | 25.0% |
!!! | GTTCTCTTTTTGACTAATTA+AGG | + | chr7.2:18278623-18278642 | None:intergenic | 25.0% |
!!! | TTTAGCTTTATATAACTCCA+TGG | - | chr7.2:18278970-18278989 | MS.gene014037:intron | 25.0% |
AAATAATCATTTGGGCACTA+TGG | - | chr7.2:18280310-18280329 | MS.gene014037:CDS | 30.0% | |
AAGTTCTCATACTCAAACAT+GGG | - | chr7.2:18278568-18278587 | MS.gene014037:CDS | 30.0% | |
ACAAAAGCAGAATTGTAACT+TGG | + | chr7.2:18279814-18279833 | None:intergenic | 30.0% | |
ATGATAGATGATTAATCCAG+AGG | + | chr7.2:18279153-18279172 | None:intergenic | 30.0% | |
ATGTTTGAGTATGAGAACTT+AGG | + | chr7.2:18278568-18278587 | None:intergenic | 30.0% | |
CTGGATTAATCATCTATCAT+TGG | - | chr7.2:18279153-18279172 | MS.gene014037:CDS | 30.0% | |
GCCCTAATTGTTTACTATTA+AGG | - | chr7.2:18280136-18280155 | MS.gene014037:intron | 30.0% | |
TAAGTTCTCATACTCAAACA+TGG | - | chr7.2:18278567-18278586 | MS.gene014037:CDS | 30.0% | |
! | CTGTTTGTTTCGTAATGTTT+TGG | - | chr7.2:18279465-18279484 | MS.gene014037:intron | 30.0% |
! | TACCATAATAATATAGTGGG+GGG | + | chr7.2:18280461-18280480 | None:intergenic | 30.0% |
!! | CTTCTATAACTTGCATTTTC+AGG | - | chr7.2:18279990-18280009 | MS.gene014037:intron | 30.0% |
!! | TCTTCTTCTTCTAAAACCTT+TGG | - | chr7.2:18279958-18279977 | MS.gene014037:intron | 30.0% |
!!! | AATGTTTTGGAACTATGTCA+CGG | - | chr7.2:18279478-18279497 | MS.gene014037:intron | 30.0% |
!!! | ACACCCTTTTTTCTTAAAGT+AGG | + | chr7.2:18279417-18279436 | None:intergenic | 30.0% |
!!! | TTTTTTCTGCAACATCAACA+TGG | + | chr7.2:18279638-18279657 | None:intergenic | 30.0% |
AAGACACGTGAAATTGTTAC+CGG | + | chr7.2:18279670-18279689 | None:intergenic | 35.0% | |
ACGTGTCTTAAAGTACATAC+CGG | - | chr7.2:18279681-18279700 | MS.gene014037:intron | 35.0% | |
AGGAACATGTTGAGATTGAA+AGG | - | chr7.2:18278695-18278714 | MS.gene014037:intron | 35.0% | |
CAGTTAACAAAGAATCGCAA+AGG | - | chr7.2:18279779-18279798 | MS.gene014037:intron | 35.0% | |
CTAGAGATAAGCATACTCAT+AGG | + | chr7.2:18279021-18279040 | None:intergenic | 35.0% | |
CTATGAGTATGCTTATCTCT+AGG | - | chr7.2:18279019-18279038 | MS.gene014037:CDS | 35.0% | |
GATTTACAAAAGCAAGTGCA+AGG | - | chr7.2:18279703-18279722 | MS.gene014037:intron | 35.0% | |
GCAGAAAAAAATGAGCATTC+CGG | - | chr7.2:18279648-18279667 | MS.gene014037:intron | 35.0% | |
GCTTTATATAACTCCATGGT+TGG | - | chr7.2:18278974-18278993 | MS.gene014037:intron | 35.0% | |
GGTTAATTAGAAGCTTGGAA+AGG | - | chr7.2:18280423-18280442 | MS.gene014037:CDS | 35.0% | |
TATTACCGTTTGATCTTCAC+CGG | + | chr7.2:18278827-18278846 | None:intergenic | 35.0% | |
TCAATCTCAACATGTTCCTT+TGG | + | chr7.2:18278694-18278713 | None:intergenic | 35.0% | |
TCATCAATTCTCTTCACCAA+AGG | - | chr7.2:18278675-18278694 | MS.gene014037:intron | 35.0% | |
TTGAGTATGAGAACTTAGGT+GGG | + | chr7.2:18278564-18278583 | None:intergenic | 35.0% | |
TTTGAGTATGAGAACTTAGG+TGG | + | chr7.2:18278565-18278584 | None:intergenic | 35.0% | |
! | CTTTTGTAGTTTCGACAAGT+AGG | - | chr7.2:18279827-18279846 | MS.gene014037:intron | 35.0% |
! | GGTGAAGAGAATTGATGATA+CGG | + | chr7.2:18278673-18278692 | None:intergenic | 35.0% |
! | TATTTTGCAATGTTTGCAGG+TGG | - | chr7.2:18280220-18280239 | MS.gene014037:CDS | 35.0% |
!! | CTTCTTCTAAAACCTTTGGA+GGG | - | chr7.2:18279962-18279981 | MS.gene014037:intron | 35.0% |
!! | TCTTCTTCTAAAACCTTTGG+AGG | - | chr7.2:18279961-18279980 | MS.gene014037:intron | 35.0% |
!! | TGCACTTGCTTTTGTAAATC+CGG | + | chr7.2:18279703-18279722 | None:intergenic | 35.0% |
AGCATTGTGGTTAAGCTTCT+TGG | + | chr7.2:18278743-18278762 | None:intergenic | 40.0% | |
AGCTTCTTGGCCATAAGTTT+AGG | + | chr7.2:18278730-18278749 | None:intergenic | 40.0% | |
ATTACCGTTTGATCTTCACC+GGG | + | chr7.2:18278826-18278845 | None:intergenic | 40.0% | |
ATTGGACCAGAGACTATTCT+TGG | - | chr7.2:18279171-18279190 | MS.gene014037:CDS | 40.0% | |
CACATCAAGATCTCAGATAG+AGG | + | chr7.2:18279907-18279926 | None:intergenic | 40.0% | |
CTCAGATAGAGGAATCTTGT+AGG | + | chr7.2:18279896-18279915 | None:intergenic | 40.0% | |
CTTCTTGGCCATAAGTTTAG+GGG | + | chr7.2:18278728-18278747 | None:intergenic | 40.0% | |
GCTTCTTGGCCATAAGTTTA+GGG | + | chr7.2:18278729-18278748 | None:intergenic | 40.0% | |
GTTGATCCAAGAATAGTCTC+TGG | + | chr7.2:18279180-18279199 | None:intergenic | 40.0% | |
TCTCATACTCAAACATGGGA+TGG | - | chr7.2:18278572-18278591 | MS.gene014037:CDS | 40.0% | |
TGCCCCCCACTATATTATTA+TGG | - | chr7.2:18280456-18280475 | MS.gene014037:CDS | 40.0% | |
TTTCATCATCAGACCAACCA+TGG | + | chr7.2:18278990-18279009 | None:intergenic | 40.0% | |
AAACATGGGATGGCTCTTAG+AGG | - | chr7.2:18278582-18278601 | MS.gene014037:CDS | 45.0% | |
GATCACGTTCACTAGCATTG+TGG | + | chr7.2:18278756-18278775 | None:intergenic | 45.0% | |
GTGCTCACGATTTCTGTGTT+TGG | - | chr7.2:18279063-18279082 | MS.gene014037:CDS | 45.0% | |
TCACTTCGTTCACTTCTTCC+CGG | - | chr7.2:18278805-18278824 | MS.gene014037:intron | 45.0% | |
TCTTCCCGGTGAAGATCAAA+CGG | - | chr7.2:18278819-18278838 | MS.gene014037:intron | 45.0% | |
TTGGCCATAAGTTTAGGGGA+TGG | + | chr7.2:18278724-18278743 | None:intergenic | 45.0% | |
! | GCACGGGTTAATTAGAAGCT+TGG | - | chr7.2:18280418-18280437 | MS.gene014037:CDS | 45.0% |
!! | CTTCTAAAACCTTTGGAGGG+AGG | - | chr7.2:18279965-18279984 | MS.gene014037:intron | 45.0% |
ATAGAAGAGCCTCCCTCCAA+AGG | + | chr7.2:18279977-18279996 | None:intergenic | 50.0% | |
GCCACCATCCCCTAAACTTA+TGG | - | chr7.2:18278717-18278736 | MS.gene014037:intron | 50.0% | |
GCCATAAGTTTAGGGGATGG+TGG | + | chr7.2:18278721-18278740 | None:intergenic | 50.0% | |
GGGATGGCTCTTAGAGGAGT+TGG | - | chr7.2:18278588-18278607 | MS.gene014037:CDS | 55.0% | |
TTTATTGGACCCCGCTCGAG+TGG | - | chr7.2:18279113-18279132 | MS.gene014037:CDS | 55.0% | |
AACCCCACCATCCACTCGAG+CGG | + | chr7.2:18279127-18279146 | None:intergenic | 60.0% | |
ACCCCACCATCCACTCGAGC+GGG | + | chr7.2:18279126-18279145 | None:intergenic | 65.0% | |
ACCCCGCTCGAGTGGATGGT+GGG | - | chr7.2:18279121-18279140 | MS.gene014037:CDS | 65.0% | |
TTGGACCCCGCTCGAGTGGA+TGG | - | chr7.2:18279117-18279136 | MS.gene014037:CDS | 65.0% | |
!! | GCTCGAGTGGATGGTGGGGT+TGG | - | chr7.2:18279126-18279145 | MS.gene014037:CDS | 65.0% |
!! | GGATGGTGGGGTTGGTCCTC+TGG | - | chr7.2:18279134-18279153 | MS.gene014037:CDS | 65.0% |
CCCCACCATCCACTCGAGCG+GGG | + | chr7.2:18279125-18279144 | None:intergenic | 70.0% | |
CCCCGCTCGAGTGGATGGTG+GGG | - | chr7.2:18279122-18279141 | MS.gene014037:CDS | 70.0% | |
GACCCCGCTCGAGTGGATGG+TGG | - | chr7.2:18279120-18279139 | MS.gene014037:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 18278547 | 18280481 | 18278547 | ID=MS.gene014037 |
chr7.2 | mRNA | 18278547 | 18280481 | 18278547 | ID=MS.gene014037.t1;Parent=MS.gene014037 |
chr7.2 | exon | 18280188 | 18280481 | 18280188 | ID=MS.gene014037.t1.exon1;Parent=MS.gene014037.t1 |
chr7.2 | CDS | 18280188 | 18280481 | 18280188 | ID=cds.MS.gene014037.t1;Parent=MS.gene014037.t1 |
chr7.2 | exon | 18279017 | 18279376 | 18279017 | ID=MS.gene014037.t1.exon2;Parent=MS.gene014037.t1 |
chr7.2 | CDS | 18279017 | 18279376 | 18279017 | ID=cds.MS.gene014037.t1;Parent=MS.gene014037.t1 |
chr7.2 | exon | 18278547 | 18278609 | 18278547 | ID=MS.gene014037.t1.exon3;Parent=MS.gene014037.t1 |
chr7.2 | CDS | 18278547 | 18278609 | 18278547 | ID=cds.MS.gene014037.t1;Parent=MS.gene014037.t1 |
Gene Sequence |
Protein sequence |