Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014104.t1 | XP_003625136.1 | 98.5 | 205 | 3 | 0 | 1 | 205 | 29 | 233 | 8.90E-93 | 349.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014104.t1 | O22230 | 51.8 | 199 | 71 | 4 | 2 | 177 | 48 | 244 | 1.0e-44 | 181.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014104.t1 | G7KTH6 | 98.5 | 205 | 3 | 0 | 1 | 205 | 29 | 233 | 6.4e-93 | 349.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene014104.t1 | TF | HSF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014104.t1 | MTR_7g091370 | 98.537 | 205 | 3 | 0 | 1 | 205 | 29 | 233 | 1.33e-149 | 414 |
MS.gene014104.t1 | MTR_5g089170 | 43.011 | 186 | 96 | 2 | 2 | 177 | 33 | 218 | 4.12e-45 | 150 |
MS.gene014104.t1 | MTR_5g010680 | 42.781 | 187 | 72 | 2 | 2 | 153 | 32 | 218 | 3.61e-44 | 150 |
MS.gene014104.t1 | MTR_1g100777 | 37.778 | 225 | 94 | 3 | 2 | 180 | 26 | 250 | 2.79e-43 | 147 |
MS.gene014104.t1 | MTR_5g017470 | 42.775 | 173 | 75 | 1 | 2 | 150 | 17 | 189 | 1.10e-42 | 145 |
MS.gene014104.t1 | MTR_3g101870 | 37.321 | 209 | 81 | 3 | 2 | 162 | 32 | 238 | 2.09e-41 | 144 |
MS.gene014104.t1 | MTR_0020s0020 | 41.799 | 189 | 74 | 2 | 2 | 154 | 41 | 229 | 7.92e-39 | 136 |
MS.gene014104.t1 | MTR_5g029680 | 47.887 | 142 | 70 | 2 | 2 | 142 | 40 | 178 | 2.77e-36 | 132 |
MS.gene014104.t1 | MTR_4g088900 | 44.025 | 159 | 81 | 4 | 2 | 153 | 41 | 198 | 5.06e-36 | 125 |
MS.gene014104.t1 | MTR_1g061170 | 47.518 | 141 | 63 | 2 | 2 | 142 | 57 | 186 | 3.59e-35 | 129 |
MS.gene014104.t1 | MTR_6g043060 | 57.143 | 84 | 36 | 0 | 2 | 85 | 30 | 113 | 5.40e-33 | 121 |
MS.gene014104.t1 | MTR_3g104550 | 44.681 | 141 | 69 | 2 | 2 | 142 | 54 | 185 | 2.13e-32 | 120 |
MS.gene014104.t1 | MTR_7g095680 | 58.333 | 84 | 35 | 0 | 2 | 85 | 57 | 140 | 2.53e-32 | 120 |
MS.gene014104.t1 | MTR_1g071360 | 39.773 | 176 | 80 | 4 | 2 | 175 | 40 | 191 | 1.28e-31 | 117 |
MS.gene014104.t1 | MTR_1g071360 | 39.773 | 176 | 80 | 4 | 2 | 175 | 37 | 188 | 1.76e-31 | 117 |
MS.gene014104.t1 | MTR_1g102860 | 54.545 | 99 | 42 | 1 | 2 | 100 | 48 | 143 | 7.68e-31 | 115 |
MS.gene014104.t1 | MTR_8g083100 | 56.471 | 85 | 37 | 0 | 2 | 86 | 30 | 114 | 2.44e-30 | 116 |
MS.gene014104.t1 | MTR_8g087540 | 43.750 | 128 | 61 | 2 | 2 | 128 | 20 | 137 | 1.22e-29 | 113 |
MS.gene014104.t1 | MTR_2g100680 | 56.471 | 85 | 37 | 0 | 2 | 86 | 39 | 123 | 2.12e-29 | 113 |
MS.gene014104.t1 | MTR_4g077970 | 41.549 | 142 | 78 | 2 | 2 | 142 | 20 | 157 | 1.14e-27 | 108 |
MS.gene014104.t1 | MTR_6g086805 | 38.462 | 156 | 71 | 2 | 2 | 144 | 19 | 162 | 1.63e-27 | 107 |
MS.gene014104.t1 | MTR_2g100670 | 52.941 | 85 | 40 | 0 | 2 | 86 | 41 | 125 | 2.73e-27 | 105 |
MS.gene014104.t1 | MTR_8g105780 | 54.118 | 85 | 38 | 1 | 2 | 85 | 30 | 114 | 6.68e-27 | 105 |
MS.gene014104.t1 | MTR_2g100670 | 52.941 | 85 | 40 | 0 | 2 | 86 | 149 | 233 | 1.52e-26 | 105 |
MS.gene014104.t1 | MTR_2g017890 | 44.330 | 97 | 54 | 0 | 2 | 98 | 23 | 119 | 2.09e-26 | 104 |
MS.gene014104.t1 | MTR_5g047190 | 37.634 | 93 | 51 | 2 | 2 | 87 | 1 | 93 | 3.22e-15 | 68.6 |
MS.gene014104.t1 | MTR_4g045757 | 46.939 | 49 | 26 | 0 | 3 | 51 | 23 | 71 | 1.18e-12 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014104.t1 | AT2G41690 | 61.176 | 170 | 48 | 3 | 2 | 153 | 48 | 217 | 8.11e-66 | 203 |
MS.gene014104.t1 | AT5G62020 | 39.506 | 243 | 87 | 7 | 2 | 191 | 31 | 266 | 6.82e-45 | 151 |
MS.gene014104.t1 | AT1G46264 | 41.237 | 194 | 76 | 3 | 2 | 157 | 42 | 235 | 4.53e-42 | 145 |
MS.gene014104.t1 | AT4G36990 | 46.328 | 177 | 77 | 3 | 2 | 160 | 22 | 198 | 5.12e-40 | 138 |
MS.gene014104.t1 | AT4G11660 | 40.196 | 204 | 76 | 2 | 2 | 159 | 67 | 270 | 1.23e-39 | 139 |
MS.gene014104.t1 | AT1G32330 | 46.809 | 141 | 75 | 0 | 2 | 142 | 45 | 185 | 9.14e-37 | 134 |
MS.gene014104.t1 | AT1G32330 | 46.809 | 141 | 75 | 0 | 2 | 142 | 45 | 185 | 9.78e-37 | 134 |
MS.gene014104.t1 | AT4G17750 | 61.176 | 85 | 33 | 0 | 2 | 86 | 60 | 144 | 1.74e-34 | 127 |
MS.gene014104.t1 | AT5G03720 | 42.945 | 163 | 80 | 3 | 2 | 163 | 63 | 213 | 5.04e-34 | 125 |
MS.gene014104.t1 | AT5G03720 | 42.945 | 163 | 80 | 3 | 2 | 163 | 63 | 213 | 5.04e-34 | 125 |
MS.gene014104.t1 | AT5G43840 | 54.639 | 97 | 44 | 0 | 2 | 98 | 27 | 123 | 1.85e-33 | 121 |
MS.gene014104.t1 | AT3G51910 | 57.471 | 87 | 37 | 0 | 2 | 88 | 37 | 123 | 3.27e-32 | 117 |
MS.gene014104.t1 | AT3G63350 | 60.241 | 83 | 33 | 0 | 2 | 84 | 36 | 118 | 4.62e-32 | 117 |
MS.gene014104.t1 | AT2G26150 | 44.681 | 141 | 69 | 3 | 2 | 142 | 52 | 183 | 8.29e-32 | 118 |
MS.gene014104.t1 | AT2G26150 | 44.681 | 141 | 69 | 3 | 2 | 142 | 52 | 183 | 8.29e-32 | 118 |
MS.gene014104.t1 | AT3G02990 | 45.390 | 141 | 72 | 1 | 2 | 142 | 31 | 166 | 1.91e-31 | 119 |
MS.gene014104.t1 | AT3G24520 | 42.657 | 143 | 64 | 2 | 2 | 144 | 25 | 149 | 4.81e-31 | 115 |
MS.gene014104.t1 | AT3G22830 | 57.955 | 88 | 37 | 0 | 2 | 89 | 69 | 156 | 1.72e-30 | 115 |
MS.gene014104.t1 | AT5G16820 | 57.647 | 85 | 36 | 0 | 2 | 86 | 35 | 119 | 1.05e-29 | 114 |
MS.gene014104.t1 | AT5G16820 | 57.647 | 85 | 36 | 0 | 2 | 86 | 35 | 119 | 1.05e-29 | 114 |
MS.gene014104.t1 | AT4G13980 | 48.980 | 98 | 50 | 0 | 2 | 99 | 31 | 128 | 4.64e-29 | 112 |
MS.gene014104.t1 | AT5G54070 | 51.807 | 83 | 40 | 0 | 2 | 84 | 79 | 161 | 3.74e-28 | 108 |
MS.gene014104.t1 | AT5G45710 | 35.135 | 185 | 97 | 4 | 13 | 187 | 32 | 203 | 6.89e-26 | 102 |
MS.gene014104.t1 | AT5G45710 | 35.135 | 185 | 97 | 4 | 13 | 187 | 32 | 203 | 6.89e-26 | 102 |
MS.gene014104.t1 | AT1G67970 | 40.667 | 150 | 74 | 4 | 2 | 148 | 27 | 164 | 2.20e-25 | 101 |
MS.gene014104.t1 | AT4G18880 | 51.899 | 79 | 38 | 0 | 20 | 98 | 41 | 119 | 2.09e-24 | 99.4 |
MS.gene014104.t1 | AT4G18870 | 38.750 | 80 | 49 | 0 | 2 | 81 | 154 | 233 | 8.47e-18 | 79.7 |
MS.gene014104.t1 | AT4G18870 | 36.250 | 80 | 50 | 1 | 2 | 81 | 21 | 99 | 5.92e-14 | 69.3 |
Find 38 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGGAGAAAGAAGGATTAAA+AGG | 0.312750 | 7.2:-17565719 | MS.gene014104:CDS |
TTTGATCTTCATCAGAATCT+TGG | 0.337536 | 7.2:+17565967 | None:intergenic |
ATAAAAGGCCAATGCTGTTT+GGG | 0.344706 | 7.2:-17565761 | MS.gene014104:CDS |
AAGCTAAAGATGATGATAAA+AGG | 0.345414 | 7.2:-17565776 | MS.gene014104:CDS |
GTAAAGTTGCAACAAGTAGA+TGG | 0.356542 | 7.2:-17566091 | MS.gene014104:CDS |
GTGTAAAGAACTACTTGATT+TGG | 0.382134 | 7.2:-17565832 | MS.gene014104:CDS |
AATGCTGTTTGGGGTGAGAT+TGG | 0.405597 | 7.2:-17565751 | MS.gene014104:CDS |
GATAAAAGGCCAATGCTGTT+TGG | 0.412696 | 7.2:-17565762 | MS.gene014104:CDS |
CGATGAAGGAACGGCGTTTG+TGG | 0.421292 | 7.2:-17567244 | MS.gene014104:CDS |
TCATCAACCTCATCAACTTC+GGG | 0.428531 | 7.2:-17565939 | MS.gene014104:CDS |
GATATCACACCATCGGTTAT+CGG | 0.429226 | 7.2:+17567273 | None:intergenic |
GGCGTTTGTGGTGTGGCAGC+CGG | 0.436959 | 7.2:-17567232 | MS.gene014104:CDS |
TGCAATGAAAGATTCAAGAA+AGG | 0.469330 | 7.2:-17566062 | MS.gene014104:CDS |
GAGAGTTACTATCCGAGATT+CGG | 0.475046 | 7.2:-17566034 | MS.gene014104:CDS |
TTGCTATGCTTGAAGAGTGT+TGG | 0.486048 | 7.2:+17567186 | None:intergenic |
ATCATCAACCTCATCAACTT+CGG | 0.493338 | 7.2:-17565940 | MS.gene014104:CDS |
CTGAGCTAACAAGCATGAAA+AGG | 0.494508 | 7.2:-17565857 | MS.gene014104:CDS |
GAGCAACAAGCAACAACAAA+CGG | 0.533270 | 7.2:-17565997 | MS.gene014104:CDS |
ATGTTCAACAAGGAGAAAGA+AGG | 0.541421 | 7.2:-17565728 | MS.gene014104:CDS |
AATCTCACCCCAAACAGCAT+TGG | 0.559832 | 7.2:+17565753 | None:intergenic |
AGATTCGGAGAAGAAAAGCT+TGG | 0.562625 | 7.2:-17566019 | MS.gene014104:CDS |
TAACCGATGGTGTGATATCG+TGG | 0.574458 | 7.2:-17567269 | MS.gene014104:CDS |
TAAAGTTGCAACAAGTAGAT+GGG | 0.577262 | 7.2:-17566090 | MS.gene014104:CDS |
GTTTGTGGTGTGGCAGCCGG+CGG | 0.593281 | 7.2:-17567229 | MS.gene014104:CDS |
TTCGGGTTACACTAATCTAG+TGG | 0.594205 | 7.2:-17565922 | MS.gene014104:CDS |
TGAAAACAAGCGACTCAAAG+AGG | 0.607328 | 7.2:-17565898 | MS.gene014104:CDS |
GTCGAGGATCCGATAACCGA+TGG | 0.607491 | 7.2:-17567282 | MS.gene014104:CDS |
AGTGTAACCCGAAGTTGATG+AGG | 0.609806 | 7.2:+17565932 | None:intergenic |
GTGATATCGTGGAACGATGA+AGG | 0.614245 | 7.2:-17567258 | MS.gene014104:CDS |
ATCGTGGAACGATGAAGGAA+CGG | 0.618716 | 7.2:-17567253 | MS.gene014104:CDS |
GAAGACATACATGTTGGTCG+AGG | 0.623457 | 7.2:-17567298 | None:intergenic |
AAGGAACGGCGTTTGTGGTG+TGG | 0.626326 | 7.2:-17567239 | MS.gene014104:CDS |
ATATCACGAGCAAACTCCGC+CGG | 0.632816 | 7.2:+17567213 | None:intergenic |
GCGACTCAAAGAGGAAAATG+TGG | 0.640956 | 7.2:-17565889 | MS.gene014104:CDS |
TATGCTTGAAGAGTGTTGGA+AGG | 0.652326 | 7.2:+17567190 | None:intergenic |
GTGAGATTGGATGTTCAACA+AGG | 0.660188 | 7.2:-17565738 | MS.gene014104:CDS |
GTTCCACGATATCACACCAT+CGG | 0.688849 | 7.2:+17567266 | None:intergenic |
TAAAAGGCCAATGCTGTTTG+GGG | 0.694963 | 7.2:-17565760 | MS.gene014104:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGTTTATTATTTCAAATTTT+GGG | + | chr7.2:17566097-17566116 | None:intergenic | 10.0% |
!! | AAAATTAAATACCTATTTGT+GGG | - | chr7.2:17566821-17566840 | MS.gene014104:intron | 15.0% |
!! | AATAATAAACAGAGAAAAAA+TGG | - | chr7.2:17566106-17566125 | MS.gene014104:intron | 15.0% |
!! | TAAAATTAAATACCTATTTG+TGG | - | chr7.2:17566820-17566839 | MS.gene014104:intron | 15.0% |
!! | TTCAATTTATACCAAAAAAA+TGG | - | chr7.2:17567142-17567161 | MS.gene014104:intron | 15.0% |
!! | TTTAAGAAAGAATTCATATT+TGG | + | chr7.2:17566729-17566748 | None:intergenic | 15.0% |
!!! | AATTCATTGTTTATTTTTGA+AGG | - | chr7.2:17566466-17566485 | MS.gene014104:intron | 15.0% |
!!! | AGTATTTTCAATTAAGATAT+AGG | - | chr7.2:17566299-17566318 | MS.gene014104:intron | 15.0% |
!!! | CTGTTTATTATTTCAAATTT+TGG | + | chr7.2:17566098-17566117 | None:intergenic | 15.0% |
!!! | GTATTTTCAATTAAGATATA+GGG | - | chr7.2:17566300-17566319 | MS.gene014104:intron | 15.0% |
!!! | GTTTATTATTTCAAATTTTG+GGG | + | chr7.2:17566096-17566115 | None:intergenic | 15.0% |
!!! | TTTTTATTTTGTGAAGTATT+AGG | - | chr7.2:17565974-17565993 | MS.gene014104:CDS | 15.0% |
!! | AAAAAGGATAGGAAAAAAAA+AGG | - | chr7.2:17566159-17566178 | MS.gene014104:intron | 20.0% |
!! | ATATTTGTTTAACCTAGTTT+AGG | - | chr7.2:17566220-17566239 | MS.gene014104:intron | 20.0% |
!! | ATCTAAATATACGATCAATT+TGG | + | chr7.2:17566029-17566048 | None:intergenic | 20.0% |
!!! | AGAGAATATTTTATATCTTC+TGG | + | chr7.2:17566331-17566350 | None:intergenic | 20.0% |
!!! | GTAAAGTTTTGTTAAGAAAA+AGG | - | chr7.2:17566143-17566162 | MS.gene014104:intron | 20.0% |
!!! | TGTATTAAAAGCATGTTTTA+TGG | + | chr7.2:17566706-17566725 | None:intergenic | 20.0% |
!!! | TTAGATTTTGTTAAATGTGA+AGG | - | chr7.2:17566269-17566288 | MS.gene014104:intron | 20.0% |
! | AAGCTAAAGATGATGATAAA+AGG | - | chr7.2:17567174-17567193 | MS.gene014104:CDS | 25.0% |
! | AATATAGTTAACCTGTTTCA+TGG | + | chr7.2:17566205-17566224 | None:intergenic | 25.0% |
! | ATAGAAAATTCAATGTTGGT+GGG | - | chr7.2:17566492-17566511 | MS.gene014104:intron | 25.0% |
! | CTCATGTTAATTGACATTAT+GGG | - | chr7.2:17566382-17566401 | MS.gene014104:intron | 25.0% |
! | TCATGTTAATTGACATTATG+GGG | - | chr7.2:17566383-17566402 | MS.gene014104:intron | 25.0% |
! | TCTCATGTTAATTGACATTA+TGG | - | chr7.2:17566381-17566400 | MS.gene014104:intron | 25.0% |
!! | TTTTCAATTAAGATATAGGG+TGG | - | chr7.2:17566303-17566322 | MS.gene014104:intron | 25.0% |
!!! | GTTTTGTTAAGAAAAAGGAT+AGG | - | chr7.2:17566148-17566167 | MS.gene014104:intron | 25.0% |
!!! | TCATTGTTTATTTTTGAAGG+AGG | - | chr7.2:17566469-17566488 | MS.gene014104:intron | 25.0% |
AAGGAGAAAGAAGGATTAAA+AGG | - | chr7.2:17567231-17567250 | MS.gene014104:CDS | 30.0% | |
ACAACACTTAATAAGCAACA+TGG | - | chr7.2:17566649-17566668 | MS.gene014104:intron | 30.0% | |
CATGTTAATTGACATTATGG+GGG | - | chr7.2:17566384-17566403 | MS.gene014104:intron | 30.0% | |
GACTTGTGAGTTTGAATTTA+AGG | + | chr7.2:17566434-17566453 | None:intergenic | 30.0% | |
GAGGATAGAAAATTCAATGT+TGG | - | chr7.2:17566488-17566507 | MS.gene014104:intron | 30.0% | |
GATAGAAAATTCAATGTTGG+TGG | - | chr7.2:17566491-17566510 | MS.gene014104:intron | 30.0% | |
GTGTAAAGAACTACTTGATT+TGG | - | chr7.2:17567118-17567137 | MS.gene014104:intron | 30.0% | |
TAAAGTTGCAACAAGTAGAT+GGG | - | chr7.2:17566860-17566879 | MS.gene014104:intron | 30.0% | |
TACCAAAAAAATGGAAGAAG+AGG | - | chr7.2:17567151-17567170 | MS.gene014104:intron | 30.0% | |
TCTTTCATGATGAACTTAAG+TGG | - | chr7.2:17566768-17566787 | MS.gene014104:intron | 30.0% | |
TGCAATGAAAGATTCAAGAA+AGG | - | chr7.2:17566888-17566907 | MS.gene014104:intron | 30.0% | |
TTAGATGTATGTACGTACAT+AGG | + | chr7.2:17565819-17565838 | None:intergenic | 30.0% | |
TTTGATCTTCATCAGAATCT+TGG | + | chr7.2:17566986-17567005 | None:intergenic | 30.0% | |
!!! | TTCCTCTTCTTCCATTTTTT+TGG | + | chr7.2:17567156-17567175 | None:intergenic | 30.0% |
ACCTATTTGTGGGATGTATA+GGG | - | chr7.2:17566831-17566850 | MS.gene014104:intron | 35.0% | |
ATCATCAACCTCATCAACTT+CGG | - | chr7.2:17567010-17567029 | MS.gene014104:intron | 35.0% | |
ATGTTCAACAAGGAGAAAGA+AGG | - | chr7.2:17567222-17567241 | MS.gene014104:CDS | 35.0% | |
ATTAACATGAGAAACGAGGA+TGG | + | chr7.2:17566373-17566392 | None:intergenic | 35.0% | |
GTAAAGTTGCAACAAGTAGA+TGG | - | chr7.2:17566859-17566878 | MS.gene014104:intron | 35.0% | |
GTCAATTAACATGAGAAACG+AGG | + | chr7.2:17566377-17566396 | None:intergenic | 35.0% | |
TAATTGACATTATGGGGGTT+TGG | - | chr7.2:17566389-17566408 | MS.gene014104:intron | 35.0% | |
TACCTATTTGTGGGATGTAT+AGG | - | chr7.2:17566830-17566849 | MS.gene014104:intron | 35.0% | |
TCAACGCAAAAACCTAAACT+AGG | + | chr7.2:17566235-17566254 | None:intergenic | 35.0% | |
! | ATAAAAGGCCAATGCTGTTT+GGG | - | chr7.2:17567189-17567208 | MS.gene014104:CDS | 35.0% |
! | GTTTTATGGTGCCTTACTAA+TGG | + | chr7.2:17566692-17566711 | None:intergenic | 35.0% |
! | TGAGTAAAGCACCATTAGTA+AGG | - | chr7.2:17566678-17566697 | MS.gene014104:intron | 35.0% |
!!! | GCAACTTCTCTAGTTTTGTA+CGG | - | chr7.2:17565783-17565802 | MS.gene014104:CDS | 35.0% |
AGATTCGGAGAAGAAAAGCT+TGG | - | chr7.2:17566931-17566950 | MS.gene014104:intron | 40.0% | |
CTGAGCTAACAAGCATGAAA+AGG | - | chr7.2:17567093-17567112 | MS.gene014104:intron | 40.0% | |
GAGAGTTACTATCCGAGATT+CGG | - | chr7.2:17566916-17566935 | MS.gene014104:intron | 40.0% | |
GAGCAACAAGCAACAACAAA+CGG | - | chr7.2:17566953-17566972 | MS.gene014104:intron | 40.0% | |
GATAAAAGGCCAATGCTGTT+TGG | - | chr7.2:17567188-17567207 | MS.gene014104:CDS | 40.0% | |
GTGAGATTGGATGTTCAACA+AGG | - | chr7.2:17567212-17567231 | MS.gene014104:CDS | 40.0% | |
TCATCAACCTCATCAACTTC+GGG | - | chr7.2:17567011-17567030 | MS.gene014104:intron | 40.0% | |
TCATGAGTACTCCATGAAAC+AGG | - | chr7.2:17566191-17566210 | MS.gene014104:intron | 40.0% | |
TCCCTATACATCCCACAAAT+AGG | + | chr7.2:17566835-17566854 | None:intergenic | 40.0% | |
TGAAAACAAGCGACTCAAAG+AGG | - | chr7.2:17567052-17567071 | MS.gene014104:intron | 40.0% | |
! | AGCTTTTCTTCTCCGAATCT+CGG | + | chr7.2:17566931-17566950 | None:intergenic | 40.0% |
! | GATATCACACCATCGGTTAT+CGG | + | chr7.2:17565680-17565699 | None:intergenic | 40.0% |
! | TAAAAGGCCAATGCTGTTTG+GGG | - | chr7.2:17567190-17567209 | MS.gene014104:CDS | 40.0% |
! | TTCGGGTTACACTAATCTAG+TGG | - | chr7.2:17567028-17567047 | MS.gene014104:intron | 40.0% |
! | TTGCTATGCTTGAAGAGTGT+TGG | + | chr7.2:17565767-17565786 | None:intergenic | 40.0% |
!! | ATTATGGGGGTTTGGTAATG+AGG | - | chr7.2:17566397-17566416 | MS.gene014104:intron | 40.0% |
!! | TATGCTTGAAGAGTGTTGGA+AGG | + | chr7.2:17565763-17565782 | None:intergenic | 40.0% |
AATCTCACCCCAAACAGCAT+TGG | + | chr7.2:17567200-17567219 | None:intergenic | 45.0% | |
ATCGTGGAACGATGAAGGAA+CGG | - | chr7.2:17565697-17565716 | MS.gene014104:CDS | 45.0% | |
GCGACTCAAAGAGGAAAATG+TGG | - | chr7.2:17567061-17567080 | MS.gene014104:intron | 45.0% | |
GTGATATCGTGGAACGATGA+AGG | - | chr7.2:17565692-17565711 | MS.gene014104:CDS | 45.0% | |
GTTCCACGATATCACACCAT+CGG | + | chr7.2:17565687-17565706 | None:intergenic | 45.0% | |
TAACCGATGGTGTGATATCG+TGG | - | chr7.2:17565681-17565700 | MS.gene014104:CDS | 45.0% | |
TCTCTCCCTATTCAATACCC+CGG | - | chr7.2:17566346-17566365 | MS.gene014104:intron | 45.0% | |
! | AATGCTGTTTGGGGTGAGAT+TGG | - | chr7.2:17567199-17567218 | MS.gene014104:CDS | 45.0% |
!! | AGTGTAACCCGAAGTTGATG+AGG | + | chr7.2:17567021-17567040 | None:intergenic | 45.0% |
!! | ATGGTCCGGGGTATTGAATA+GGG | + | chr7.2:17566354-17566373 | None:intergenic | 45.0% |
ATATCACGAGCAAACTCCGC+CGG | + | chr7.2:17565740-17565759 | None:intergenic | 50.0% | |
ATGAGAAACGAGGATGGTCC+GGG | + | chr7.2:17566367-17566386 | None:intergenic | 50.0% | |
CATGAGAAACGAGGATGGTC+CGG | + | chr7.2:17566368-17566387 | None:intergenic | 50.0% | |
!! | GATGGTCCGGGGTATTGAAT+AGG | + | chr7.2:17566355-17566374 | None:intergenic | 50.0% |
AAGGAACGGCGTTTGTGGTG+TGG | - | chr7.2:17565711-17565730 | MS.gene014104:CDS | 55.0% | |
CGATGAAGGAACGGCGTTTG+TGG | - | chr7.2:17565706-17565725 | MS.gene014104:CDS | 55.0% | |
GTCGAGGATCCGATAACCGA+TGG | - | chr7.2:17565668-17565687 | MS.gene014104:CDS | 55.0% | |
TGAGAAACGAGGATGGTCCG+GGG | + | chr7.2:17566366-17566385 | None:intergenic | 55.0% | |
GGCGTTTGTGGTGTGGCAGC+CGG | - | chr7.2:17565718-17565737 | MS.gene014104:CDS | 65.0% | |
GTTTGTGGTGTGGCAGCCGG+CGG | - | chr7.2:17565721-17565740 | MS.gene014104:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 17565662 | 17567310 | 17565662 | ID=MS.gene014104 |
chr7.2 | mRNA | 17565662 | 17567310 | 17565662 | ID=MS.gene014104.t1;Parent=MS.gene014104 |
chr7.2 | exon | 17567152 | 17567310 | 17567152 | ID=MS.gene014104.t1.exon1;Parent=MS.gene014104.t1 |
chr7.2 | CDS | 17567152 | 17567310 | 17567152 | ID=cds.MS.gene014104.t1;Parent=MS.gene014104.t1 |
chr7.2 | exon | 17565662 | 17566120 | 17565662 | ID=MS.gene014104.t1.exon2;Parent=MS.gene014104.t1 |
chr7.2 | CDS | 17565662 | 17566120 | 17565662 | ID=cds.MS.gene014104.t1;Parent=MS.gene014104.t1 |
Gene Sequence |
Protein sequence |