Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014156.t1 | XP_024625805.1 | 89.7 | 348 | 35 | 1 | 1 | 348 | 1 | 347 | 1.00E-157 | 566.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014156.t1 | Q9SVY1 | 95.1 | 182 | 8 | 1 | 168 | 348 | 195 | 376 | 1.2e-106 | 387.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014156.t1 | A0A396H3I2 | 89.7 | 348 | 35 | 1 | 1 | 348 | 1 | 347 | 7.4e-158 | 566.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014156.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014156.t1 | MTR_1g093095 | 75.000 | 172 | 40 | 1 | 174 | 342 | 99 | 270 | 1.99e-97 | 291 |
| MS.gene014156.t1 | MTR_4g059870 | 33.540 | 161 | 90 | 5 | 184 | 343 | 61 | 205 | 5.17e-21 | 94.4 |
| MS.gene014156.t1 | MTR_1g016010 | 34.146 | 164 | 89 | 6 | 182 | 343 | 62 | 208 | 5.48e-21 | 94.0 |
| MS.gene014156.t1 | MTR_1g094115 | 35.526 | 152 | 78 | 7 | 187 | 336 | 56 | 189 | 1.46e-20 | 92.8 |
| MS.gene014156.t1 | MTR_1g094115 | 33.951 | 162 | 87 | 7 | 177 | 336 | 63 | 206 | 1.52e-20 | 92.8 |
| MS.gene014156.t1 | MTR_1g112270 | 33.540 | 161 | 89 | 6 | 177 | 336 | 60 | 203 | 1.97e-20 | 92.8 |
| MS.gene014156.t1 | MTR_1g112270 | 33.540 | 161 | 89 | 6 | 177 | 336 | 71 | 214 | 2.03e-20 | 92.8 |
| MS.gene014156.t1 | MTR_8g017210 | 33.333 | 159 | 86 | 6 | 184 | 340 | 85 | 225 | 3.01e-20 | 92.0 |
| MS.gene014156.t1 | MTR_2g099990 | 32.716 | 162 | 89 | 6 | 177 | 336 | 62 | 205 | 4.88e-20 | 91.3 |
| MS.gene014156.t1 | MTR_2g090745 | 34.091 | 176 | 96 | 8 | 163 | 336 | 9 | 166 | 1.25e-19 | 89.7 |
| MS.gene014156.t1 | MTR_2g093960 | 35.971 | 139 | 80 | 4 | 184 | 321 | 55 | 185 | 1.44e-19 | 89.4 |
| MS.gene014156.t1 | MTR_2g099990 | 33.117 | 154 | 83 | 6 | 185 | 336 | 1 | 136 | 5.03e-19 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014156.t1 | AT3G57670 | 61.818 | 385 | 96 | 8 | 4 | 348 | 3 | 376 | 8.09e-142 | 407 |
| MS.gene014156.t1 | AT1G51220 | 54.722 | 360 | 125 | 8 | 1 | 345 | 1 | 337 | 1.31e-124 | 361 |
| MS.gene014156.t1 | AT3G20880 | 56.923 | 325 | 107 | 8 | 45 | 345 | 95 | 410 | 1.77e-119 | 351 |
| MS.gene014156.t1 | AT1G13290 | 68.868 | 212 | 40 | 4 | 119 | 328 | 54 | 241 | 1.04e-102 | 305 |
| MS.gene014156.t1 | AT1G34790 | 64.159 | 226 | 72 | 1 | 119 | 344 | 83 | 299 | 3.69e-101 | 300 |
| MS.gene014156.t1 | AT1G08290 | 75.148 | 169 | 38 | 2 | 174 | 338 | 164 | 332 | 3.01e-96 | 289 |
| MS.gene014156.t1 | AT1G34370 | 38.816 | 152 | 81 | 5 | 184 | 326 | 28 | 176 | 2.91e-26 | 106 |
| MS.gene014156.t1 | AT1G34370 | 38.816 | 152 | 81 | 5 | 184 | 326 | 238 | 386 | 8.35e-26 | 108 |
| MS.gene014156.t1 | AT1G34370 | 38.816 | 152 | 81 | 5 | 184 | 326 | 238 | 386 | 8.35e-26 | 108 |
| MS.gene014156.t1 | AT5G22890 | 39.744 | 156 | 81 | 6 | 184 | 329 | 211 | 363 | 1.51e-23 | 100 |
| MS.gene014156.t1 | AT5G03150 | 33.333 | 165 | 93 | 5 | 184 | 347 | 76 | 224 | 6.04e-22 | 97.1 |
| MS.gene014156.t1 | AT1G55110 | 35.404 | 161 | 85 | 6 | 182 | 340 | 84 | 227 | 1.48e-21 | 95.5 |
| MS.gene014156.t1 | AT1G55110 | 35.404 | 161 | 85 | 6 | 182 | 340 | 84 | 227 | 1.48e-21 | 95.5 |
| MS.gene014156.t1 | AT1G55110 | 35.404 | 161 | 85 | 6 | 182 | 340 | 84 | 227 | 1.48e-21 | 95.5 |
| MS.gene014156.t1 | AT2G02070 | 33.540 | 161 | 89 | 5 | 177 | 336 | 68 | 211 | 1.85e-20 | 92.8 |
| MS.gene014156.t1 | AT2G02070 | 33.540 | 161 | 89 | 5 | 177 | 336 | 68 | 211 | 1.85e-20 | 92.8 |
| MS.gene014156.t1 | AT2G02080 | 33.974 | 156 | 85 | 5 | 182 | 336 | 75 | 213 | 3.02e-20 | 92.0 |
| MS.gene014156.t1 | AT2G02080 | 33.974 | 156 | 85 | 5 | 182 | 336 | 75 | 213 | 3.02e-20 | 92.0 |
| MS.gene014156.t1 | AT2G02080 | 33.974 | 156 | 85 | 5 | 182 | 336 | 75 | 213 | 3.02e-20 | 92.0 |
| MS.gene014156.t1 | AT2G02080 | 33.974 | 156 | 85 | 5 | 182 | 336 | 75 | 213 | 3.02e-20 | 92.0 |
| MS.gene014156.t1 | AT5G66730 | 35.032 | 157 | 82 | 7 | 182 | 336 | 53 | 191 | 3.07e-20 | 92.0 |
| MS.gene014156.t1 | AT1G14580 | 33.951 | 162 | 87 | 6 | 177 | 336 | 69 | 212 | 9.12e-20 | 90.5 |
| MS.gene014156.t1 | AT1G14580 | 33.951 | 162 | 87 | 6 | 177 | 336 | 69 | 212 | 9.12e-20 | 90.5 |
| MS.gene014156.t1 | AT1G14580 | 33.951 | 162 | 87 | 6 | 177 | 336 | 83 | 226 | 9.82e-20 | 90.5 |
| MS.gene014156.t1 | AT2G02080 | 34.641 | 153 | 82 | 5 | 185 | 336 | 1 | 136 | 1.65e-19 | 89.4 |
| MS.gene014156.t1 | AT2G02080 | 34.641 | 153 | 82 | 5 | 185 | 336 | 1 | 136 | 1.65e-19 | 89.4 |
| MS.gene014156.t1 | AT3G45260 | 35.065 | 154 | 83 | 5 | 184 | 336 | 62 | 199 | 2.98e-19 | 89.0 |
| MS.gene014156.t1 | AT3G45260 | 35.065 | 154 | 83 | 5 | 184 | 336 | 62 | 199 | 2.98e-19 | 89.0 |
| MS.gene014156.t1 | AT5G44160 | 31.515 | 165 | 95 | 5 | 184 | 347 | 21 | 168 | 1.13e-18 | 87.0 |
| MS.gene014156.t1 | AT5G60470 | 33.117 | 154 | 86 | 5 | 184 | 336 | 58 | 195 | 1.20e-18 | 87.0 |
| MS.gene014156.t1 | AT5G44160 | 31.515 | 165 | 95 | 5 | 184 | 347 | 60 | 207 | 1.31e-18 | 87.0 |
| MS.gene014156.t1 | AT5G60470 | 33.117 | 154 | 86 | 5 | 184 | 336 | 63 | 200 | 1.39e-18 | 87.0 |
| MS.gene014156.t1 | AT5G60470 | 33.117 | 154 | 86 | 5 | 184 | 336 | 67 | 204 | 1.40e-18 | 87.0 |
| MS.gene014156.t1 | AT4G02670 | 32.298 | 161 | 92 | 4 | 177 | 336 | 69 | 213 | 1.76e-18 | 86.3 |
| MS.gene014156.t1 | AT4G02670 | 32.298 | 161 | 92 | 4 | 177 | 336 | 71 | 215 | 1.89e-18 | 86.3 |
| MS.gene014156.t1 | AT3G50700 | 32.484 | 157 | 88 | 5 | 182 | 337 | 55 | 194 | 1.95e-18 | 86.3 |
| MS.gene014156.t1 | AT1G03840 | 32.298 | 161 | 91 | 6 | 177 | 336 | 55 | 198 | 3.31e-18 | 85.9 |
| MS.gene014156.t1 | AT1G03840 | 31.056 | 161 | 93 | 5 | 177 | 336 | 57 | 200 | 3.52e-18 | 85.9 |
| MS.gene014156.t1 | AT3G13810 | 31.677 | 161 | 93 | 5 | 177 | 336 | 81 | 225 | 1.33e-17 | 84.3 |
| MS.gene014156.t1 | AT3G13810 | 31.677 | 161 | 93 | 5 | 177 | 336 | 86 | 230 | 1.37e-17 | 84.3 |
| MS.gene014156.t1 | AT3G13810 | 31.677 | 161 | 93 | 5 | 177 | 336 | 86 | 230 | 1.37e-17 | 84.3 |
| MS.gene014156.t1 | AT3G13810 | 31.677 | 161 | 93 | 5 | 177 | 336 | 87 | 231 | 1.45e-17 | 84.0 |
| MS.gene014156.t1 | AT3G13810 | 31.677 | 161 | 93 | 5 | 177 | 336 | 67 | 211 | 1.54e-17 | 84.0 |
| MS.gene014156.t1 | AT3G13810 | 31.677 | 161 | 93 | 5 | 177 | 336 | 73 | 217 | 1.69e-17 | 84.0 |
| MS.gene014156.t1 | AT1G25250 | 29.496 | 139 | 88 | 5 | 182 | 317 | 54 | 185 | 1.78e-13 | 71.2 |
| MS.gene014156.t1 | AT1G25250 | 29.496 | 139 | 88 | 5 | 182 | 317 | 31 | 162 | 2.08e-13 | 70.9 |
| MS.gene014156.t1 | AT1G68130 | 30.935 | 139 | 85 | 5 | 182 | 317 | 62 | 192 | 3.79e-13 | 70.5 |
Find 72 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGATTCATGGTTAATAAT+AGG | 0.242177 | 7.4:-16478626 | MS.gene014156:CDS |
| AAAGATCATATCAAAGCTTT+TGG | 0.279015 | 7.4:-16476707 | MS.gene014156:CDS |
| TGTGTGCCTCTTAGAGATTC+AGG | 0.280812 | 7.4:+16476992 | None:intergenic |
| GGAAGTGGACATGCTGCTTA+TGG | 0.286552 | 7.4:-16476686 | MS.gene014156:CDS |
| GTTGGTGAGGATTCTTGTTC+AGG | 0.320459 | 7.4:-16478645 | MS.gene014156:CDS |
| AAAAGAATTGTGGGAAGCTT+TGG | 0.349652 | 7.4:-16476772 | MS.gene014156:CDS |
| GAAGAGAAAAGATTAGAGTA+AGG | 0.352738 | 7.4:+16479098 | None:intergenic |
| GGATTCTTGTTCAGGATTCA+TGG | 0.360583 | 7.4:-16478637 | MS.gene014156:CDS |
| ATGATGATGATAGTGGAAAA+AGG | 0.364911 | 7.4:+16478968 | None:intergenic |
| AAACCCTAGTGCTGCTGAAA+TGG | 0.370039 | 7.4:-16478727 | MS.gene014156:CDS |
| GGCTTAACAAAGGACAATAT+TGG | 0.383450 | 7.4:-16478605 | MS.gene014156:CDS |
| CCTTGTTACTGTTGTGCACC+AGG | 0.388233 | 7.4:-16476947 | MS.gene014156:CDS |
| AGAGGTAGTTCTTCTCTTAG+AGG | 0.403255 | 7.4:+16478918 | None:intergenic |
| ACTCCTTCTCAGATTCTCAT+TGG | 0.410986 | 7.4:-16478576 | MS.gene014156:CDS |
| TCTTTGAGAGGCTTTGCTCT+TGG | 0.418075 | 7.4:+16476902 | None:intergenic |
| GAAGTGGACATGCTGCTTAT+GGG | 0.418215 | 7.4:-16476685 | MS.gene014156:CDS |
| ATTTCAGCAGCACTAGGGTT+TGG | 0.419339 | 7.4:+16478729 | None:intergenic |
| GATCTCTGAGGAGTTATTAG+AGG | 0.433036 | 7.4:+16478689 | None:intergenic |
| GAAGGGTTTGAATTTGAAGA+TGG | 0.443053 | 7.4:+16479041 | None:intergenic |
| AGGAAATATGATGATGATAG+TGG | 0.447261 | 7.4:+16478961 | None:intergenic |
| TTCCCTTTCTTCTAAATCCA+TGG | 0.448360 | 7.4:+16478809 | None:intergenic |
| AGACCTTCCTTGCACTGCCA+TGG | 0.468218 | 7.4:-16478826 | MS.gene014156:CDS |
| TGCCATGGATTTAGAAGAAA+GGG | 0.480220 | 7.4:-16478811 | MS.gene014156:CDS |
| TCTTGCTCTACTTCAGAAGC+TGG | 0.480582 | 7.4:+16476635 | None:intergenic |
| AGGAGAAGGTGGTGAAGAAG+AGG | 0.481051 | 7.4:+16478941 | None:intergenic |
| CTAAGAGGCACACAACCAAC+AGG | 0.487480 | 7.4:-16476983 | MS.gene014156:CDS |
| TTGTTGTGGTGGTGAAGAAA+AGG | 0.494029 | 7.4:+16479002 | None:intergenic |
| GAAGCCATTTCAGCAGCACT+AGG | 0.500052 | 7.4:+16478723 | None:intergenic |
| TCTTCTCTTAGAGGAGGAGA+AGG | 0.501187 | 7.4:+16478927 | None:intergenic |
| AAGAGAAAAGATTAGAGTAA+GGG | 0.501589 | 7.4:+16479099 | None:intergenic |
| GAACTCATGAAAAGAATTGT+GGG | 0.503233 | 7.4:-16476781 | MS.gene014156:CDS |
| AGAACTCATGAAAAGAATTG+TGG | 0.519976 | 7.4:-16476782 | MS.gene014156:CDS |
| TTAGAAGAAAGGGAAGAAGA+TGG | 0.524706 | 7.4:-16478801 | MS.gene014156:CDS |
| GTTACTGTTGCACTTCACAT+AGG | 0.528079 | 7.4:-16478756 | MS.gene014156:CDS |
| ATGAGAATCTGAGAAGGAGT+AGG | 0.530035 | 7.4:+16478579 | None:intergenic |
| TGTTGTGGTGGTGAAGAAAA+GGG | 0.533983 | 7.4:+16479003 | None:intergenic |
| CATGCTGCTTATGGGTGTGA+TGG | 0.534441 | 7.4:-16476677 | MS.gene014156:CDS |
| GTTGGAATTAGGCTTAAAAG+AGG | 0.534675 | 7.4:+16478900 | None:intergenic |
| CATGGATCACAGTACAGAAA+AGG | 0.538411 | 7.4:-16477016 | MS.gene014156:CDS |
| CTGCCATGGATTTAGAAGAA+AGG | 0.539425 | 7.4:-16478812 | MS.gene014156:CDS |
| AATCCATGGCAGTGCAAGGA+AGG | 0.544023 | 7.4:+16478823 | None:intergenic |
| AGGTATGGTTATTGTTGTTG+TGG | 0.546230 | 7.4:+16478988 | None:intergenic |
| GGTGGTGAAGAAAAGGGTGG+TGG | 0.550176 | 7.4:+16479009 | None:intergenic |
| TATGGTTATTGTTGTTGTGG+TGG | 0.558394 | 7.4:+16478991 | None:intergenic |
| AAGCTTTGGTATTGTATCTG+TGG | 0.559395 | 7.4:-16476758 | MS.gene014156:CDS |
| ACACATTACAAGAGGAAACA+TGG | 0.569309 | 7.4:-16476863 | MS.gene014156:CDS |
| ACAGGGCAAGAAAACTGAGT+TGG | 0.573007 | 7.4:+16478552 | None:intergenic |
| TGAGAATCTGAGAAGGAGTA+GGG | 0.575360 | 7.4:+16478580 | None:intergenic |
| AAAGGTCCTGAATCTCTAAG+AGG | 0.580235 | 7.4:-16476998 | MS.gene014156:CDS |
| AGTGTTCTAAAATCTTTGAG+AGG | 0.584894 | 7.4:+16476890 | None:intergenic |
| CTTGTTACTGTTGTGCACCA+GGG | 0.585436 | 7.4:-16476946 | MS.gene014156:CDS |
| AGAGTAAGGGTTATCAGCCA+TGG | 0.585920 | 7.4:+16479112 | None:intergenic |
| TCTCTTAGAGGAGGAGAAGG+TGG | 0.585932 | 7.4:+16478930 | None:intergenic |
| GGTAGTTCTTCTCTTAGAGG+AGG | 0.595867 | 7.4:+16478921 | None:intergenic |
| CACTTCAAACACATTACAAG+AGG | 0.601250 | 7.4:-16476871 | MS.gene014156:CDS |
| AAGCCATTTCAGCAGCACTA+GGG | 0.602433 | 7.4:+16478724 | None:intergenic |
| TCTAAATCCATGGCAGTGCA+AGG | 0.604858 | 7.4:+16478819 | None:intergenic |
| GGTAGCCTTAGCATTCCTGT+TGG | 0.607467 | 7.4:+16476968 | None:intergenic |
| TCAATGTTGTTTCTGCACCC+TGG | 0.610178 | 7.4:+16476929 | None:intergenic |
| CACAACCAACAGGAATGCTA+AGG | 0.612992 | 7.4:-16476973 | MS.gene014156:CDS |
| ATCACTGATAAAGAACATGT+TGG | 0.619011 | 7.4:-16478663 | MS.gene014156:CDS |
| CAATAGATATAACAACATGC+AGG | 0.621278 | 7.4:-16478514 | MS.gene014156:intron |
| GGACCAATGAGAATCTGAGA+AGG | 0.626496 | 7.4:+16478573 | None:intergenic |
| GTTAATAATAGGCTTAACAA+AGG | 0.627528 | 7.4:-16478615 | MS.gene014156:CDS |
| TGATAAAGAACATGTTGGTG+AGG | 0.633314 | 7.4:-16478658 | MS.gene014156:CDS |
| AGATCAACAAGAACATGAGG+TGG | 0.635764 | 7.4:-16478856 | MS.gene014156:CDS |
| CATGTGTAGAAAATGTAGCA+AGG | 0.640710 | 7.4:-16476828 | MS.gene014156:CDS |
| CCTGGTGCACAACAGTAACA+AGG | 0.646997 | 7.4:+16476947 | None:intergenic |
| TGAAGATCAACAAGAACATG+AGG | 0.648021 | 7.4:-16478859 | MS.gene014156:CDS |
| GTGTGATGGATTTGAAGAAG+AGG | 0.666362 | 7.4:-16476663 | MS.gene014156:CDS |
| TGTGGTGGTGAAGAAAAGGG+TGG | 0.675317 | 7.4:+16479006 | None:intergenic |
| ATCAGTGATAGTGATCTCTG+AGG | 0.722446 | 7.4:+16478677 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAAATATTTTTTATTT+TGG | + | chr7.4:16478581-16478600 | None:intergenic | 0.0% |
| !! | AAAAATAAAATTGATTACTA+AGG | + | chr7.4:16478364-16478383 | None:intergenic | 10.0% |
| !! | AAAATAAAATTGATTACTAA+GGG | + | chr7.4:16478363-16478382 | None:intergenic | 10.0% |
| !!! | TATTTTTAAAATTACAGTTT+TGG | - | chr7.4:16478231-16478250 | MS.gene014156:intron | 10.0% |
| !! | ATAGCATATATTAATTTCAT+TGG | - | chr7.4:16477636-16477655 | MS.gene014156:intron | 15.0% |
| !!! | TTTTAAACCTTGAATTATAA+AGG | + | chr7.4:16477327-16477346 | None:intergenic | 15.0% |
| !! | AATTTAGAGATAGAAAAATG+TGG | - | chr7.4:16478115-16478134 | MS.gene014156:intron | 20.0% |
| !! | AATTTGAAGATGGAAAAATA+TGG | + | chr7.4:16476687-16476706 | None:intergenic | 20.0% |
| !! | ATTAAACTATGGAAAAAAGA+AGG | + | chr7.4:16478020-16478039 | None:intergenic | 20.0% |
| !! | TATTAATGTACAATCATGAA+GGG | + | chr7.4:16478469-16478488 | None:intergenic | 20.0% |
| !! | TTATTAATGTACAATCATGA+AGG | + | chr7.4:16478470-16478489 | None:intergenic | 20.0% |
| !! | TTTCAAAAACTATTTCAAAC+AGG | - | chr7.4:16478337-16478356 | MS.gene014156:intron | 20.0% |
| !!! | AAAAACTAAAGAAGAGTTTT+TGG | + | chr7.4:16478192-16478211 | None:intergenic | 20.0% |
| !!! | AAAAATTTTCTGTTCTATAC+AGG | + | chr7.4:16477893-16477912 | None:intergenic | 20.0% |
| !!! | ATTTATTTTAATGATCGATC+TGG | + | chr7.4:16477927-16477946 | None:intergenic | 20.0% |
| !!! | GTCTTCAATTTTTTAGTTTT+GGG | - | chr7.4:16478259-16478278 | MS.gene014156:intron | 20.0% |
| !!! | TATAAGTCTTCTTTTTACAA+TGG | + | chr7.4:16478315-16478334 | None:intergenic | 20.0% |
| !!! | TCATATTTTTCTTGTTTTGT+TGG | + | chr7.4:16476856-16476875 | None:intergenic | 20.0% |
| !!! | TGTCTTCAATTTTTTAGTTT+TGG | - | chr7.4:16478258-16478277 | MS.gene014156:intron | 20.0% |
| ! | AAGAAAGTTATTGACAGAAA+AGG | + | chr7.4:16477395-16477414 | None:intergenic | 25.0% |
| ! | AAGAGAAAAGATTAGAGTAA+GGG | + | chr7.4:16476639-16476658 | None:intergenic | 25.0% |
| ! | ACAGATTTCAATGTAGTAAA+AGG | + | chr7.4:16477846-16477865 | None:intergenic | 25.0% |
| ! | AGAAAGTTATTGACAGAAAA+GGG | + | chr7.4:16477394-16477413 | None:intergenic | 25.0% |
| ! | AGTTTAGTCAATCAAAGAAA+AGG | + | chr7.4:16477802-16477821 | None:intergenic | 25.0% |
| ! | ATGGAAAAATATGGTTGAAT+TGG | + | chr7.4:16476678-16476697 | None:intergenic | 25.0% |
| ! | CAAAAAGAAAGAAATGAAAG+AGG | + | chr7.4:16477506-16477525 | None:intergenic | 25.0% |
| ! | GTTAATAATAGGCTTAACAA+AGG | - | chr7.4:16477120-16477139 | MS.gene014156:intron | 25.0% |
| ! | TAAAAAATTGTTCCTCTTTG+TGG | - | chr7.4:16477950-16477969 | MS.gene014156:intron | 25.0% |
| !! | AAAGATCATATCAAAGCTTT+TGG | - | chr7.4:16479028-16479047 | MS.gene014156:CDS | 25.0% |
| !! | GTTTTTATAGATGCATATGT+GGG | - | chr7.4:16478694-16478713 | MS.gene014156:CDS | 25.0% |
| !! | TTCAGTAGATCTTGATAATA+AGG | + | chr7.4:16478540-16478559 | None:intergenic | 25.0% |
| !! | TTCTGAAGAAAGAAAAAAGA+AGG | + | chr7.4:16477590-16477609 | None:intergenic | 25.0% |
| !! | TTTTTATAGATGCATATGTG+GGG | - | chr7.4:16478695-16478714 | MS.gene014156:CDS | 25.0% |
| !!! | TGTTTTTATAGATGCATATG+TGG | - | chr7.4:16478693-16478712 | MS.gene014156:CDS | 25.0% |
| !!! | TTTCTTGTTTTGTTGGAATT+AGG | + | chr7.4:16476849-16476868 | None:intergenic | 25.0% |
| AAAAAGAAGGCAAATTTGGA+TGG | + | chr7.4:16478007-16478026 | None:intergenic | 30.0% | |
| AGAACTCATGAAAAGAATTG+TGG | - | chr7.4:16478953-16478972 | MS.gene014156:CDS | 30.0% | |
| AGTCAATCAAAGAAAAGGAA+AGG | + | chr7.4:16477797-16477816 | None:intergenic | 30.0% | |
| ATCACTGATAAAGAACATGT+TGG | - | chr7.4:16477072-16477091 | MS.gene014156:intron | 30.0% | |
| ATTCATATATACTGAGAGAC+TGG | - | chr7.4:16477753-16477772 | MS.gene014156:intron | 30.0% | |
| ATTTGGATGGTATATTAGCA+TGG | + | chr7.4:16477994-16478013 | None:intergenic | 30.0% | |
| CAATAGATATAACAACATGC+AGG | - | chr7.4:16477221-16477240 | MS.gene014156:intron | 30.0% | |
| CACACTTCCTTTATAATTCA+AGG | - | chr7.4:16477317-16477336 | MS.gene014156:intron | 30.0% | |
| CAGGATTCATGGTTAATAAT+AGG | - | chr7.4:16477109-16477128 | MS.gene014156:intron | 30.0% | |
| GAAAGAAAAAAGAAGGAAAG+AGG | + | chr7.4:16477583-16477602 | None:intergenic | 30.0% | |
| GAACTCATGAAAAGAATTGT+GGG | - | chr7.4:16478954-16478973 | MS.gene014156:CDS | 30.0% | |
| GAAGAGAAAAGATTAGAGTA+AGG | + | chr7.4:16476640-16476659 | None:intergenic | 30.0% | |
| TCTCTCAGTATATATGAATC+AGG | + | chr7.4:16477752-16477771 | None:intergenic | 30.0% | |
| TGAAACAAAACAGAAGAACA+AGG | + | chr7.4:16477292-16477311 | None:intergenic | 30.0% | |
| TGAAGGGCAAAGATTTAATT+TGG | + | chr7.4:16478453-16478472 | None:intergenic | 30.0% | |
| TGGAAAAAAGAAGGCAAATT+TGG | + | chr7.4:16478011-16478030 | None:intergenic | 30.0% | |
| TTCATATATACTGAGAGACT+GGG | - | chr7.4:16477754-16477773 | MS.gene014156:intron | 30.0% | |
| ! | AATTTTCTGTTCTATACAGG+TGG | + | chr7.4:16477890-16477909 | None:intergenic | 30.0% |
| ! | AGCTAGTGTTAAATTTTGCA+TGG | - | chr7.4:16477695-16477714 | MS.gene014156:intron | 30.0% |
| ! | AGGAAATATGATGATGATAG+TGG | + | chr7.4:16476777-16476796 | None:intergenic | 30.0% |
| ! | ATTTTCTGTTCTATACAGGT+GGG | + | chr7.4:16477889-16477908 | None:intergenic | 30.0% |
| ! | CTACATTTTCTACACATGAA+TGG | + | chr7.4:16478905-16478924 | None:intergenic | 30.0% |
| ! | GTAGATCTTGATAATAAGGT+CGG | + | chr7.4:16478536-16478555 | None:intergenic | 30.0% |
| ! | GTTCTGATTTTAAACACAAG+AGG | - | chr7.4:16478999-16479018 | MS.gene014156:CDS | 30.0% |
| ! | TCAATGTAGTAAAAGGCATA+AGG | + | chr7.4:16477839-16477858 | None:intergenic | 30.0% |
| ! | TCCTTGATTTGAACCATTAA+CGG | - | chr7.4:16477414-16477433 | MS.gene014156:intron | 30.0% |
| ! | TTTTATAGATGCATATGTGG+GGG | - | chr7.4:16478696-16478715 | MS.gene014156:CDS | 30.0% |
| !! | AGTGTTCTAAAATCTTTGAG+AGG | + | chr7.4:16478848-16478867 | None:intergenic | 30.0% |
| !! | ATGATGATGATAGTGGAAAA+AGG | + | chr7.4:16476770-16476789 | None:intergenic | 30.0% |
| !!! | TGAAAGTTTTAGAGCAAACA+GGG | + | chr7.4:16477203-16477222 | None:intergenic | 30.0% |
| !!! | TTGAAAGTTTTAGAGCAAAC+AGG | + | chr7.4:16477204-16477223 | None:intergenic | 30.0% |
| !!! | TTTTGGAAAGTGTTTCAAAC+AGG | + | chr7.4:16478175-16478194 | None:intergenic | 30.0% |
| AAAAAGAAGGAAAGAGGTCA+AGG | + | chr7.4:16477577-16477596 | None:intergenic | 35.0% | |
| AAAAGAATTGTGGGAAGCTT+TGG | - | chr7.4:16478963-16478982 | MS.gene014156:CDS | 35.0% | |
| AAACAGAAGAACAAGGTCTT+TGG | + | chr7.4:16477285-16477304 | None:intergenic | 35.0% | |
| ACACATTACAAGAGGAAACA+TGG | - | chr7.4:16478872-16478891 | MS.gene014156:CDS | 35.0% | |
| ACCGTTAATGGTTCAAATCA+AGG | + | chr7.4:16477418-16477437 | None:intergenic | 35.0% | |
| ATCAAAGAAAAGGAAAGGTG+TGG | + | chr7.4:16477792-16477811 | None:intergenic | 35.0% | |
| CACTTCAAACACATTACAAG+AGG | - | chr7.4:16478864-16478883 | MS.gene014156:CDS | 35.0% | |
| CATGTGTAGAAAATGTAGCA+AGG | - | chr7.4:16478907-16478926 | MS.gene014156:CDS | 35.0% | |
| GAAGGGTTTGAATTTGAAGA+TGG | + | chr7.4:16476697-16476716 | None:intergenic | 35.0% | |
| GGCTTAACAAAGGACAATAT+TGG | - | chr7.4:16477130-16477149 | MS.gene014156:intron | 35.0% | |
| GTATATTAGCATGGTTGGAT+TGG | + | chr7.4:16477985-16478004 | None:intergenic | 35.0% | |
| GTTGGAATTAGGCTTAAAAG+AGG | + | chr7.4:16476838-16476857 | None:intergenic | 35.0% | |
| TGAAGATCAACAAGAACATG+AGG | - | chr7.4:16476876-16476895 | MS.gene014156:CDS | 35.0% | |
| TGATAAAGAACATGTTGGTG+AGG | - | chr7.4:16477077-16477096 | MS.gene014156:intron | 35.0% | |
| TGCCATGGATTTAGAAGAAA+GGG | - | chr7.4:16476924-16476943 | MS.gene014156:CDS | 35.0% | |
| TTAGAAGAAAGGGAAGAAGA+TGG | - | chr7.4:16476934-16476953 | MS.gene014156:CDS | 35.0% | |
| TTCCCTTTCTTCTAAATCCA+TGG | + | chr7.4:16476929-16476948 | None:intergenic | 35.0% | |
| ! | AAGCTTTGGTATTGTATCTG+TGG | - | chr7.4:16478977-16478996 | MS.gene014156:CDS | 35.0% |
| ! | AGGTATGGTTATTGTTGTTG+TGG | + | chr7.4:16476750-16476769 | None:intergenic | 35.0% |
| ! | GCTATAACTCTAGAAGAAAG+AGG | + | chr7.4:16477621-16477640 | None:intergenic | 35.0% |
| ! | TATGGTTATTGTTGTTGTGG+TGG | + | chr7.4:16476747-16476766 | None:intergenic | 35.0% |
| !! | CATATCAAAGCTTTTGGAAG+TGG | - | chr7.4:16479034-16479053 | MS.gene014156:CDS | 35.0% |
| !! | GATGATAGTGGAAAAAGGTA+TGG | + | chr7.4:16476765-16476784 | None:intergenic | 35.0% |
| AAAGGTCCTGAATCTCTAAG+AGG | - | chr7.4:16478737-16478756 | MS.gene014156:CDS | 40.0% | |
| AAGCATCAGAGAACCGTTAA+TGG | + | chr7.4:16477430-16477449 | None:intergenic | 40.0% | |
| ACTCCTTCTCAGATTCTCAT+TGG | - | chr7.4:16477159-16477178 | MS.gene014156:intron | 40.0% | |
| AGAGGTAGTTCTTCTCTTAG+AGG | + | chr7.4:16476820-16476839 | None:intergenic | 40.0% | |
| AGATCAACAAGAACATGAGG+TGG | - | chr7.4:16476879-16476898 | MS.gene014156:CDS | 40.0% | |
| ATGAGAATCTGAGAAGGAGT+AGG | + | chr7.4:16477159-16477178 | None:intergenic | 40.0% | |
| ATTAACGGTTCTCTGATGCT+TGG | - | chr7.4:16477429-16477448 | MS.gene014156:intron | 40.0% | |
| CATGGATCACAGTACAGAAA+AGG | - | chr7.4:16478719-16478738 | MS.gene014156:CDS | 40.0% | |
| CTGCCATGGATTTAGAAGAA+AGG | - | chr7.4:16476923-16476942 | MS.gene014156:CDS | 40.0% | |
| GGATGGTATATTAGCATGGT+TGG | + | chr7.4:16477990-16478009 | None:intergenic | 40.0% | |
| GGATTCTTGTTCAGGATTCA+TGG | - | chr7.4:16477098-16477117 | MS.gene014156:intron | 40.0% | |
| GTTACTGTTGCACTTCACAT+AGG | - | chr7.4:16476979-16476998 | MS.gene014156:CDS | 40.0% | |
| TCTGATGCTTGGATAGAAAG+AGG | - | chr7.4:16477440-16477459 | MS.gene014156:intron | 40.0% | |
| TGAGAATCTGAGAAGGAGTA+GGG | + | chr7.4:16477158-16477177 | None:intergenic | 40.0% | |
| ! | AGAAAAGGAAAGGTGTGGTA+AGG | + | chr7.4:16477787-16477806 | None:intergenic | 40.0% |
| ! | ATCAGTGATAGTGATCTCTG+AGG | + | chr7.4:16477061-16477080 | None:intergenic | 40.0% |
| ! | GATCTCTGAGGAGTTATTAG+AGG | + | chr7.4:16477049-16477068 | None:intergenic | 40.0% |
| ! | TGTTGTGGTGGTGAAGAAAA+GGG | + | chr7.4:16476735-16476754 | None:intergenic | 40.0% |
| ! | TTGTTGTGGTGGTGAAGAAA+AGG | + | chr7.4:16476736-16476755 | None:intergenic | 40.0% |
| !! | GTGTGATGGATTTGAAGAAG+AGG | - | chr7.4:16479072-16479091 | MS.gene014156:CDS | 40.0% |
| !!! | CTTTTGCTGTTAGAGGAGAT+TGG | - | chr7.4:16478930-16478949 | MS.gene014156:CDS | 40.0% |
| AAGCCATTTCAGCAGCACTA+GGG | + | chr7.4:16477014-16477033 | None:intergenic | 45.0% | |
| ACAGGGCAAGAAAACTGAGT+TGG | + | chr7.4:16477186-16477205 | None:intergenic | 45.0% | |
| AGAAGCAGAAGCAGAAGCAA+TGG | + | chr7.4:16477367-16477386 | None:intergenic | 45.0% | |
| ATTTCAGCAGCACTAGGGTT+TGG | + | chr7.4:16477009-16477028 | None:intergenic | 45.0% | |
| CACAACCAACAGGAATGCTA+AGG | - | chr7.4:16478762-16478781 | MS.gene014156:CDS | 45.0% | |
| CTTGTTACTGTTGTGCACCA+GGG | - | chr7.4:16478789-16478808 | MS.gene014156:CDS | 45.0% | |
| GGACCAATGAGAATCTGAGA+AGG | + | chr7.4:16477165-16477184 | None:intergenic | 45.0% | |
| GGTAGTTCTTCTCTTAGAGG+AGG | + | chr7.4:16476817-16476836 | None:intergenic | 45.0% | |
| TCTAAATCCATGGCAGTGCA+AGG | + | chr7.4:16476919-16476938 | None:intergenic | 45.0% | |
| TCTTCTCTTAGAGGAGGAGA+AGG | + | chr7.4:16476811-16476830 | None:intergenic | 45.0% | |
| TCTTGCTCTACTTCAGAAGC+TGG | + | chr7.4:16479103-16479122 | None:intergenic | 45.0% | |
| TGGACTAAGAAGCCACAAAG+AGG | + | chr7.4:16477965-16477984 | None:intergenic | 45.0% | |
| TGTGTGCCTCTTAGAGATTC+AGG | + | chr7.4:16478746-16478765 | None:intergenic | 45.0% | |
| ! | AAACCCTAGTGCTGCTGAAA+TGG | - | chr7.4:16477008-16477027 | MS.gene014156:CDS | 45.0% |
| ! | GAAGTGGACATGCTGCTTAT+GGG | - | chr7.4:16479050-16479069 | MS.gene014156:CDS | 45.0% |
| ! | GTTGGTGAGGATTCTTGTTC+AGG | - | chr7.4:16477090-16477109 | MS.gene014156:intron | 45.0% |
| ! | TCTTTGAGAGGCTTTGCTCT+TGG | + | chr7.4:16478836-16478855 | None:intergenic | 45.0% |
| !! | AGAAAAGGGTGGTGGTTTTG+TGG | + | chr7.4:16476721-16476740 | None:intergenic | 45.0% |
| !! | TCAATGTTGTTTCTGCACCC+TGG | + | chr7.4:16478809-16478828 | None:intergenic | 45.0% |
| !!! | AGCAAGGCTTTTGCTGTTAG+AGG | - | chr7.4:16478923-16478942 | MS.gene014156:CDS | 45.0% |
| !! | AATATAATTTAATTAAACTA+TGG | + | chr7.4:16478031-16478050 | None:intergenic | 5.0% |
| !!! | TTATTTTAAGAAATAATTTT+GGG | - | chr7.4:16477670-16477689 | MS.gene014156:intron | 5.0% |
| !!! | TTTATTTTAAGAAATAATTT+TGG | - | chr7.4:16477669-16477688 | MS.gene014156:intron | 5.0% |
| AATCCATGGCAGTGCAAGGA+AGG | + | chr7.4:16476915-16476934 | None:intergenic | 50.0% | |
| AGGAGAAGGTGGTGAAGAAG+AGG | + | chr7.4:16476797-16476816 | None:intergenic | 50.0% | |
| CCTGGTGCACAACAGTAACA+AGG | + | chr7.4:16478791-16478810 | None:intergenic | 50.0% | |
| CCTTGTTACTGTTGTGCACC+AGG | - | chr7.4:16478788-16478807 | MS.gene014156:CDS | 50.0% | |
| GAAGCCATTTCAGCAGCACT+AGG | + | chr7.4:16477015-16477034 | None:intergenic | 50.0% | |
| TAGATGCATATGTGGGGGCA+TGG | - | chr7.4:16478701-16478720 | MS.gene014156:CDS | 50.0% | |
| TCTCTTAGAGGAGGAGAAGG+TGG | + | chr7.4:16476808-16476827 | None:intergenic | 50.0% | |
| ! | CATGCTGCTTATGGGTGTGA+TGG | - | chr7.4:16479058-16479077 | MS.gene014156:CDS | 50.0% |
| ! | CTAAGAGGCACACAACCAAC+AGG | - | chr7.4:16478752-16478771 | MS.gene014156:CDS | 50.0% |
| ! | GGAAGTGGACATGCTGCTTA+TGG | - | chr7.4:16479049-16479068 | MS.gene014156:CDS | 50.0% |
| ! | GGTAGCCTTAGCATTCCTGT+TGG | + | chr7.4:16478770-16478789 | None:intergenic | 50.0% |
| ! | TGTGGTGGTGAAGAAAAGGG+TGG | + | chr7.4:16476732-16476751 | None:intergenic | 50.0% |
| !!! | GGTGGTGGTTTTGTGGAGAA+GGG | + | chr7.4:16476714-16476733 | None:intergenic | 50.0% |
| AGACCTTCCTTGCACTGCCA+TGG | - | chr7.4:16476909-16476928 | MS.gene014156:CDS | 55.0% | |
| GGTGGTGAAGAAAAGGGTGG+TGG | + | chr7.4:16476729-16476748 | None:intergenic | 55.0% | |
| !!! | GGGTGGTGGTTTTGTGGAGA+AGG | + | chr7.4:16476715-16476734 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 16476625 | 16479132 | 16476625 | ID=MS.gene014156 |
| chr7.4 | mRNA | 16476625 | 16479132 | 16476625 | ID=MS.gene014156.t1;Parent=MS.gene014156 |
| chr7.4 | exon | 16478515 | 16479132 | 16478515 | ID=MS.gene014156.t1.exon1;Parent=MS.gene014156.t1 |
| chr7.4 | CDS | 16478515 | 16479132 | 16478515 | ID=cds.MS.gene014156.t1;Parent=MS.gene014156.t1 |
| chr7.4 | exon | 16476625 | 16477053 | 16476625 | ID=MS.gene014156.t1.exon2;Parent=MS.gene014156.t1 |
| chr7.4 | CDS | 16476625 | 16477053 | 16476625 | ID=cds.MS.gene014156.t1;Parent=MS.gene014156.t1 |
| Gene Sequence |
| Protein sequence |
