AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01417

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01417.t1 MTR_2g013370 88.406 276 29 2 1 275 1 274 8.39e-172 475
MS.gene01417.t1 MTR_4g089095 52.258 310 101 11 1 275 1 298 4.70e-85 256
MS.gene01417.t1 MTR_4g089095 51.331 263 85 9 44 275 14 264 6.63e-72 222
MS.gene01417.t1 MTR_3g091820 67.606 71 22 1 30 99 27 97 2.80e-29 113
MS.gene01417.t1 MTR_2g096740 48.092 131 56 5 46 175 62 181 6.40e-29 111
MS.gene01417.t1 MTR_4g088580 63.415 82 28 2 48 127 57 138 6.59e-29 113
MS.gene01417.t1 MTR_2g096740 48.092 131 56 5 46 175 77 196 8.56e-29 111
MS.gene01417.t1 MTR_8g479350 60.241 83 30 2 39 120 63 143 1.16e-28 112
MS.gene01417.t1 MTR_7g024670 60.920 87 29 2 38 119 69 155 1.19e-27 110
MS.gene01417.t1 MTR_4g063780 59.302 86 29 2 45 125 74 158 1.35e-27 108
MS.gene01417.t1 MTR_4g022370 35.514 214 100 9 45 228 81 286 6.07e-27 107
MS.gene01417.t1 MTR_8g079060 53.488 86 39 1 31 116 15 99 1.01e-26 104
MS.gene01417.t1 MTR_2g093220 65.789 76 23 2 25 99 21 94 1.08e-26 105
MS.gene01417.t1 MTR_8g068210 60.870 69 26 1 40 107 26 94 2.19e-26 105
MS.gene01417.t1 MTR_2g014170 83.673 49 8 0 45 93 44 92 2.46e-26 105
MS.gene01417.t1 MTR_8g015840 60.811 74 22 1 20 93 1 67 2.92e-26 102
MS.gene01417.t1 MTR_4g461080 61.728 81 28 2 20 97 1 81 6.91e-26 103
MS.gene01417.t1 MTR_8g027295 70.690 58 16 1 44 100 22 79 8.25e-26 102
MS.gene01417.t1 MTR_3g090430 74.138 58 14 1 45 101 50 107 1.55e-25 103
MS.gene01417.t1 MTR_7g059400 79.245 53 10 1 48 99 78 130 1.80e-25 103
MS.gene01417.t1 MTR_1g077600 64.179 67 21 2 34 99 33 97 2.93e-25 102
MS.gene01417.t1 MTR_1g077600 64.179 67 21 2 34 99 33 97 2.94e-25 101
MS.gene01417.t1 MTR_4g109980 80.000 50 10 0 44 93 38 87 4.12e-25 102
MS.gene01417.t1 MTR_2g059540 79.592 49 10 0 45 93 30 78 1.07e-24 98.6
MS.gene01417.t1 MTR_3g077750 46.296 108 43 2 1 93 1 108 3.58e-24 99.8
MS.gene01417.t1 MTR_1g056810 74.074 54 13 1 47 99 13 66 5.54e-24 98.6
MS.gene01417.t1 MTR_4g082060 50.562 89 42 2 16 103 93 180 3.15e-23 98.6
MS.gene01417.t1 MTR_5g031440 75.000 48 12 0 46 93 43 90 3.56e-23 97.1
MS.gene01417.t1 MTR_3g435480 51.087 92 24 3 28 98 98 189 8.50e-23 97.4
MS.gene01417.t1 MTR_7g010950 74.074 54 13 1 46 98 135 188 1.05e-22 97.4
MS.gene01417.t1 MTR_6g027450 67.857 56 17 1 46 100 89 144 2.76e-22 94.7
MS.gene01417.t1 MTR_2g014060 78.261 46 10 0 48 93 27 72 2.87e-22 94.7
MS.gene01417.t1 MTR_6g027460 67.241 58 18 1 44 100 94 151 2.99e-22 95.1
MS.gene01417.t1 MTR_2g016030 62.963 54 20 0 46 99 47 100 5.91e-22 90.1
MS.gene01417.t1 MTR_7g086780 67.857 56 17 1 46 100 99 154 6.48e-22 94.7
MS.gene01417.t1 MTR_6g012450 73.077 52 13 1 48 98 138 189 6.91e-22 95.1
MS.gene01417.t1 MTR_5g041420 48.387 93 29 2 25 98 99 191 1.33e-21 92.4
MS.gene01417.t1 MTR_8g044220 66.038 53 17 1 48 99 120 172 5.31e-21 92.0
MS.gene01417.t1 MTR_5g041530 38.843 121 69 2 33 152 127 243 3.32e-20 89.4
MS.gene01417.t1 MTR_5g041380 47.436 78 41 0 48 125 129 206 5.90e-20 88.6
MS.gene01417.t1 MTR_5g041400 50.704 71 35 0 48 118 121 191 6.83e-20 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01417.t1 AT1G28310 63.855 83 29 1 20 101 1 83 7.31e-29 112
MS.gene01417.t1 AT1G28310 63.855 83 29 1 20 101 25 107 1.28e-28 112
MS.gene01417.t1 AT5G60200 56.842 95 35 3 19 112 32 121 7.07e-28 108
MS.gene01417.t1 AT5G66940 53.763 93 40 2 23 113 7 98 2.12e-27 106
MS.gene01417.t1 AT3G55370 66.667 66 21 1 45 109 75 140 3.08e-27 108
MS.gene01417.t1 AT3G55370 66.667 66 21 1 45 109 75 140 3.16e-27 107
MS.gene01417.t1 AT3G55370 66.667 66 21 1 45 109 120 185 3.61e-27 108
MS.gene01417.t1 AT1G51700 57.500 80 30 1 33 108 16 95 4.20e-27 104
MS.gene01417.t1 AT5G60850 58.621 87 32 2 34 116 36 122 4.32e-27 107
MS.gene01417.t1 AT3G45610 59.211 76 28 2 44 118 38 111 1.14e-26 104
MS.gene01417.t1 AT3G61850 75.439 57 13 1 44 99 60 116 2.24e-26 104
MS.gene01417.t1 AT3G61850 75.439 57 13 1 44 99 60 116 2.24e-26 104
MS.gene01417.t1 AT2G28510 77.193 57 12 1 44 99 46 102 2.47e-26 104
MS.gene01417.t1 AT3G61850 75.439 57 13 1 44 99 72 128 2.74e-26 104
MS.gene01417.t1 AT3G61850 75.439 57 13 1 44 99 60 116 3.33e-26 105
MS.gene01417.t1 AT3G61850 75.439 57 13 1 44 99 72 128 3.78e-26 105
MS.gene01417.t1 AT3G50410 72.881 59 15 1 42 99 26 84 7.95e-26 102
MS.gene01417.t1 AT2G37590 61.429 70 24 2 35 101 76 145 1.10e-25 103
MS.gene01417.t1 AT4G24060 67.164 67 19 2 34 99 43 107 1.50e-25 103
MS.gene01417.t1 AT1G64620 57.692 78 31 1 16 93 21 96 2.03e-25 103
MS.gene01417.t1 AT1G07640 70.690 58 15 1 46 101 21 78 3.72e-25 101
MS.gene01417.t1 AT2G28810 77.551 49 11 0 45 93 76 124 3.84e-25 102
MS.gene01417.t1 AT4G38000 50.538 93 40 2 45 137 40 126 3.87e-25 100
MS.gene01417.t1 AT3G21270 79.245 53 10 1 46 97 29 81 4.24e-25 99.4
MS.gene01417.t1 AT2G28810 77.551 49 11 0 45 93 93 141 5.31e-25 102
MS.gene01417.t1 AT4G21050 66.129 62 20 1 48 108 26 87 6.07e-25 99.4
MS.gene01417.t1 AT1G07640 70.690 58 15 1 46 101 77 134 6.32e-25 102
MS.gene01417.t1 AT5G02460 73.214 56 14 1 45 99 94 149 7.17e-25 102
MS.gene01417.t1 AT1G07640 70.690 58 15 1 46 101 85 142 7.78e-25 101
MS.gene01417.t1 AT1G21340 52.381 84 37 2 21 101 11 94 3.34e-24 98.6
MS.gene01417.t1 AT2G46590 74.000 50 13 0 44 93 66 115 4.75e-24 99.8
MS.gene01417.t1 AT2G46590 74.000 50 13 0 44 93 78 127 5.28e-24 100
MS.gene01417.t1 AT5G65590 64.615 65 17 2 36 99 36 95 1.04e-23 98.2
MS.gene01417.t1 AT3G52440 67.797 59 18 1 48 105 27 85 1.07e-23 97.1
MS.gene01417.t1 AT3G52440 68.966 58 17 1 48 104 46 103 1.49e-23 97.1
MS.gene01417.t1 AT4G00940 54.217 83 30 2 19 100 48 123 2.58e-23 96.7
MS.gene01417.t1 AT4G00940 54.217 83 30 2 19 100 48 123 2.58e-23 96.7
MS.gene01417.t1 AT4G00940 54.217 83 30 2 19 100 48 123 2.58e-23 96.7
MS.gene01417.t1 AT3G47500 76.923 52 11 1 48 98 112 163 7.11e-23 97.8
MS.gene01417.t1 AT5G62430 48.936 94 39 3 20 108 24 113 7.97e-23 95.5
MS.gene01417.t1 AT1G47655 70.000 50 15 0 44 93 27 76 1.59e-22 92.8
MS.gene01417.t1 AT4G21040 65.455 55 19 0 48 102 27 81 1.62e-22 93.2
MS.gene01417.t1 AT1G69570 72.222 54 14 1 46 98 132 185 2.10e-22 95.9
MS.gene01417.t1 AT5G62940 78.261 46 10 0 48 93 75 120 2.86e-22 95.1
MS.gene01417.t1 AT5G39660 75.000 52 12 1 48 98 140 191 3.43e-22 95.9
MS.gene01417.t1 AT5G39660 75.000 52 12 1 48 98 140 191 3.43e-22 95.9
MS.gene01417.t1 AT5G39660 75.000 52 12 1 48 98 140 191 3.43e-22 95.9
MS.gene01417.t1 AT1G26790 73.077 52 13 1 48 98 113 164 5.36e-22 94.4
MS.gene01417.t1 AT2G34140 68.519 54 16 1 46 98 58 111 5.65e-22 90.1
MS.gene01417.t1 AT1G29160 68.519 54 16 1 46 98 62 115 7.54e-22 90.1
MS.gene01417.t1 AT4G21080 60.714 56 22 0 48 103 27 82 1.63e-21 90.9
MS.gene01417.t1 AT4G21030 59.574 47 19 0 48 94 23 69 9.09e-14 68.6

Find 64 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAAACTCAAGCTCTTTA+AGG 0.165512 2.2:-69194431 MS.gene01417:CDS
TTGGGAGGATATTGATTCTT+TGG 0.256542 2.2:-69194250 MS.gene01417:CDS
ATTACCTTCTGATTGATCTT+TGG 0.282882 2.2:+69194536 None:intergenic
TTTCTCATAGAAGGAGTCTT+TGG 0.340630 2.2:+69194924 None:intergenic
TTGCTGGTATCTCCCATGGC+TGG 0.373727 2.2:+69194307 None:intergenic
GAAGGTAATAATGAAGAGTT+TGG 0.377362 2.2:-69194522 MS.gene01417:CDS
ATTCTGCCTGTTGGCATTTG+AGG 0.380271 2.2:+69194638 None:intergenic
TGGTGAAGAGTTTAAAATAA+TGG 0.381474 2.2:-69194388 MS.gene01417:CDS
TTTGATCTTGCAACAAGGTT+TGG 0.387583 2.2:+69194958 None:intergenic
GGACTAAAGGTGGTACTCTA+AGG 0.389801 2.2:-69194767 MS.gene01417:CDS
TCTTGCAAGCTCTGCAGAAA+TGG 0.390626 2.2:+69194796 None:intergenic
AATAGAAAGCTTTGGTATTG+AGG 0.392436 2.2:+69194459 None:intergenic
AATAATGAAGAGTTTGGTAT+TGG 0.406113 2.2:-69194516 MS.gene01417:CDS
GGCATTTGAGGTGGTGGTGG+AGG 0.410239 2.2:+69194650 None:intergenic
GTTGGCATTTGAGGTGGTGG+TGG 0.415446 2.2:+69194647 None:intergenic
AAAGAGCTTGAGTTTGAGAA+TGG 0.415643 2.2:+69194435 None:intergenic
AAGCTTTGGTATTGAGGAAA+AGG 0.415750 2.2:+69194465 None:intergenic
TCATCCAATGGATATAACTA+TGG 0.419434 2.2:-69194408 MS.gene01417:CDS
CAACTGATCTAAATGTTCCT+TGG 0.420889 2.2:-69194224 MS.gene01417:CDS
TTTCTAGTAGAGGTGTTGAT+TGG 0.423681 2.2:-69194983 MS.gene01417:CDS
TCCATGCCACTACTTGTTGC+TGG 0.431157 2.2:+69194291 None:intergenic
AACTGATCTAAATGTTCCTT+GGG 0.432000 2.2:-69194223 MS.gene01417:CDS
GAGGTGGTGTTAATAGAAGT+TGG 0.432478 2.2:+69194690 None:intergenic
ATGTTCCTGTTGGTGGTGTT+AGG 0.438700 2.2:-69194743 MS.gene01417:CDS
TTCTTCCTAACACCACCAAC+AGG 0.450348 2.2:+69194738 None:intergenic
TTCACCATAGTTATATCCAT+TGG 0.450485 2.2:+69194404 None:intergenic
GCATGGATATGTCAAACTAT+TGG 0.455144 2.2:-69194275 MS.gene01417:CDS
GTATTTGTAGAGTCACATCT+TGG 0.457892 2.2:+69194861 None:intergenic
CTAAGGAATGTTCCTGTTGG+TGG 0.457905 2.2:-69194750 MS.gene01417:CDS
AGTGCAATGTTAAACACTAA+TGG 0.464844 2.2:-69194345 MS.gene01417:CDS
GCAGAGCTTGCAAGAGACAT+TGG 0.471598 2.2:-69194788 MS.gene01417:CDS
TGCTGGTATCTCCCATGGCT+GGG 0.480908 2.2:+69194308 None:intergenic
CCTGTTGGCATTTGAGGTGG+TGG 0.484699 2.2:+69194644 None:intergenic
AGAATGGGAATAGAAAGCTT+TGG 0.494931 2.2:+69194451 None:intergenic
CTTGTTGCAAGATCAAAACT+TGG 0.495155 2.2:-69194952 MS.gene01417:CDS
CCACCACCTCAAATGCCAAC+AGG 0.506248 2.2:-69194644 MS.gene01417:CDS
TGAAGAGTTTGGTATTGGTA+AGG 0.508499 2.2:-69194511 MS.gene01417:CDS
TATGTCAAACTATTGGAGTT+GGG 0.508899 2.2:-69194268 MS.gene01417:CDS
TGCAAGAGACATTGGACTAA+AGG 0.515682 2.2:-69194780 MS.gene01417:CDS
AAGAGCTTGAGTTTGAGAAT+GGG 0.526214 2.2:+69194436 None:intergenic
ATATGTCAAACTATTGGAGT+TGG 0.531877 2.2:-69194269 MS.gene01417:CDS
TTGGTACTCATCAGATTCTG+TGG 0.543797 2.2:+69194555 None:intergenic
TCTAAGCAAGTTTCTAGTAG+AGG 0.557594 2.2:-69194993 MS.gene01417:CDS
CTTGTTGCTGGTATCTCCCA+TGG 0.557935 2.2:+69194303 None:intergenic
GTTATTGTAGTAACAAAACT+TGG 0.560267 2.2:+69194839 None:intergenic
GGTGTTAATAGAAGTTGGAG+AGG 0.561058 2.2:+69194695 None:intergenic
CTGCCTGTTGGCATTTGAGG+TGG 0.562704 2.2:+69194641 None:intergenic
AGAGATTCATGCATAGAAGA+AGG 0.563751 2.2:+69194603 None:intergenic
ATGTTAAACACTAATGGTAG+TGG 0.570415 2.2:-69194339 MS.gene01417:CDS
ACTCTAAGGAATGTTCCTGT+TGG 0.580863 2.2:-69194753 MS.gene01417:CDS
GTGGCACTATTACCCAGCCA+TGG 0.580959 2.2:-69194320 MS.gene01417:CDS
ACCAGCAACAAGTAGTGGCA+TGG 0.584219 2.2:-69194292 MS.gene01417:CDS
TGAAGAGTTTAAAATAATGG+AGG 0.607082 2.2:-69194385 MS.gene01417:CDS
GAGATACCAGCAACAAGTAG+TGG 0.607387 2.2:-69194297 MS.gene01417:CDS
TGGCACTATTACCCAGCCAT+GGG 0.615856 2.2:-69194319 MS.gene01417:CDS
AGTACCAAAGATCAATCAGA+AGG 0.617584 2.2:-69194540 MS.gene01417:CDS
AGCTCTTTAAGGTCATCCAA+TGG 0.620244 2.2:-69194420 MS.gene01417:CDS
TTCATGCATAGAAGAAGGTG+TGG 0.623493 2.2:+69194608 None:intergenic
CAAGCTCTGCAGAAATGGCG+AGG 0.631289 2.2:+69194801 None:intergenic
GTACTCATCAGATTCTGTGG+TGG 0.648289 2.2:+69194558 None:intergenic
AAGAGACATTGGACTAAAGG+TGG 0.661565 2.2:-69194777 MS.gene01417:CDS
GTCAAACTATTGGAGTTGGG+AGG 0.665707 2.2:-69194265 MS.gene01417:CDS
GCAACAAAATCAGCAACTAG+AGG 0.669254 2.2:-69194895 MS.gene01417:CDS
TTGATATCAGAATCATCCCA+AGG 0.669368 2.2:+69194207 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AATAATGAAGAGTTTGGTAT+TGG - chr2.2:69194689-69194708 MS.gene01417:CDS 25.0%
! GTTATTGTAGTAACAAAACT+TGG + chr2.2:69194369-69194388 None:intergenic 25.0%
!! TGAAGAGTTTAAAATAATGG+AGG - chr2.2:69194820-69194839 MS.gene01417:CDS 25.0%
!! TGGTGAAGAGTTTAAAATAA+TGG - chr2.2:69194817-69194836 MS.gene01417:CDS 25.0%
AACTGATCTAAATGTTCCTT+GGG - chr2.2:69194982-69195001 MS.gene01417:CDS 30.0%
AGTGCAATGTTAAACACTAA+TGG - chr2.2:69194860-69194879 MS.gene01417:CDS 30.0%
ATATGTCAAACTATTGGAGT+TGG - chr2.2:69194936-69194955 MS.gene01417:CDS 30.0%
ATGTTAAACACTAATGGTAG+TGG - chr2.2:69194866-69194885 MS.gene01417:CDS 30.0%
ATTACCTTCTGATTGATCTT+TGG + chr2.2:69194672-69194691 None:intergenic 30.0%
GAAGGTAATAATGAAGAGTT+TGG - chr2.2:69194683-69194702 MS.gene01417:CDS 30.0%
TATGTCAAACTATTGGAGTT+GGG - chr2.2:69194937-69194956 MS.gene01417:CDS 30.0%
TCATCCAATGGATATAACTA+TGG - chr2.2:69194797-69194816 MS.gene01417:CDS 30.0%
TTCACCATAGTTATATCCAT+TGG + chr2.2:69194804-69194823 None:intergenic 30.0%
! AATAGAAAGCTTTGGTATTG+AGG + chr2.2:69194749-69194768 None:intergenic 30.0%
AAAGAGCTTGAGTTTGAGAA+TGG + chr2.2:69194773-69194792 None:intergenic 35.0%
AAGAGCTTGAGTTTGAGAAT+GGG + chr2.2:69194772-69194791 None:intergenic 35.0%
AGAATGGGAATAGAAAGCTT+TGG + chr2.2:69194757-69194776 None:intergenic 35.0%
AGAGATTCATGCATAGAAGA+AGG + chr2.2:69194605-69194624 None:intergenic 35.0%
AGTACCAAAGATCAATCAGA+AGG - chr2.2:69194665-69194684 MS.gene01417:CDS 35.0%
CAACTGATCTAAATGTTCCT+TGG - chr2.2:69194981-69195000 MS.gene01417:CDS 35.0%
CTTGTTGCAAGATCAAAACT+TGG - chr2.2:69194253-69194272 MS.gene01417:CDS 35.0%
GCATGGATATGTCAAACTAT+TGG - chr2.2:69194930-69194949 MS.gene01417:CDS 35.0%
GTATTTGTAGAGTCACATCT+TGG + chr2.2:69194347-69194366 None:intergenic 35.0%
TCTCAAACTCAAGCTCTTTA+AGG - chr2.2:69194774-69194793 MS.gene01417:CDS 35.0%
TTGATATCAGAATCATCCCA+AGG + chr2.2:69195001-69195020 None:intergenic 35.0%
TTTCTCATAGAAGGAGTCTT+TGG + chr2.2:69194284-69194303 None:intergenic 35.0%
TTTGATCTTGCAACAAGGTT+TGG + chr2.2:69194250-69194269 None:intergenic 35.0%
! AAGCTTTGGTATTGAGGAAA+AGG + chr2.2:69194743-69194762 None:intergenic 35.0%
! GGTGCTAATAGTAGTTTTTG+AGG + chr2.2:69194537-69194556 None:intergenic 35.0%
!! CAAGTTTTGATCTTGCAACA+AGG + chr2.2:69194255-69194274 None:intergenic 35.0%
!! GCTAATAGTAGTTTTTGAGG+TGG + chr2.2:69194534-69194553 None:intergenic 35.0%
!! TCTAAGCAAGTTTCTAGTAG+AGG - chr2.2:69194212-69194231 MS.gene01417:CDS 35.0%
!! TGAAGAGTTTGGTATTGGTA+AGG - chr2.2:69194694-69194713 MS.gene01417:CDS 35.0%
!! TTGGGAGGATATTGATTCTT+TGG - chr2.2:69194955-69194974 MS.gene01417:CDS 35.0%
!! TTTCTAGTAGAGGTGTTGAT+TGG - chr2.2:69194222-69194241 MS.gene01417:CDS 35.0%
!!! GGTTTTATTATTCTGCCTGT+TGG + chr2.2:69194579-69194598 None:intergenic 35.0%
!!! TGCTGTTGTTTTCTCATAGA+AGG + chr2.2:69194293-69194312 None:intergenic 35.0%
AAGAGACATTGGACTAAAGG+TGG - chr2.2:69194428-69194447 MS.gene01417:CDS 40.0%
GCAACAAAATCAGCAACTAG+AGG - chr2.2:69194310-69194329 MS.gene01417:CDS 40.0%
GGTGTTAATAGAAGTTGGAG+AGG + chr2.2:69194513-69194532 None:intergenic 40.0%
TGCAAGAGACATTGGACTAA+AGG - chr2.2:69194425-69194444 MS.gene01417:CDS 40.0%
TTCATGCATAGAAGAAGGTG+TGG + chr2.2:69194600-69194619 None:intergenic 40.0%
TTCTGTGGTGGCAAAAAAGA+TGG + chr2.2:69194638-69194657 None:intergenic 40.0%
TTGGTACTCATCAGATTCTG+TGG + chr2.2:69194653-69194672 None:intergenic 40.0%
! ACTCTAAGGAATGTTCCTGT+TGG - chr2.2:69194452-69194471 MS.gene01417:CDS 40.0%
! GAGGTGGTGTTAATAGAAGT+TGG + chr2.2:69194518-69194537 None:intergenic 40.0%
!! AGCTCTTTAAGGTCATCCAA+TGG - chr2.2:69194785-69194804 MS.gene01417:CDS 40.0%
ATTCTGCCTGTTGGCATTTG+AGG + chr2.2:69194570-69194589 None:intergenic 45.0%
CTAAGGAATGTTCCTGTTGG+TGG - chr2.2:69194455-69194474 MS.gene01417:CDS 45.0%
GAGATACCAGCAACAAGTAG+TGG - chr2.2:69194908-69194927 MS.gene01417:CDS 45.0%
GGACTAAAGGTGGTACTCTA+AGG - chr2.2:69194438-69194457 MS.gene01417:CDS 45.0%
GTACTCATCAGATTCTGTGG+TGG + chr2.2:69194650-69194669 None:intergenic 45.0%
GTCAAACTATTGGAGTTGGG+AGG - chr2.2:69194940-69194959 MS.gene01417:CDS 45.0%
TCTTGCAAGCTCTGCAGAAA+TGG + chr2.2:69194412-69194431 None:intergenic 45.0%
TGTGGTGGCAAAAAAGATGG+TGG + chr2.2:69194635-69194654 None:intergenic 45.0%
TTCTTCCTAACACCACCAAC+AGG + chr2.2:69194470-69194489 None:intergenic 45.0%
!! ATGTTCCTGTTGGTGGTGTT+AGG - chr2.2:69194462-69194481 MS.gene01417:CDS 45.0%
ACCAGCAACAAGTAGTGGCA+TGG - chr2.2:69194913-69194932 MS.gene01417:CDS 50.0%
CTTGTTGCTGGTATCTCCCA+TGG + chr2.2:69194905-69194924 None:intergenic 50.0%
GCAGAGCTTGCAAGAGACAT+TGG - chr2.2:69194417-69194436 MS.gene01417:CDS 50.0%
TGGCACTATTACCCAGCCAT+GGG - chr2.2:69194886-69194905 MS.gene01417:CDS 50.0%
! TCCATGCCACTACTTGTTGC+TGG + chr2.2:69194917-69194936 None:intergenic 50.0%
CAAGCTCTGCAGAAATGGCG+AGG + chr2.2:69194407-69194426 None:intergenic 55.0%
CCACCACCTCAAATGCCAAC+AGG - chr2.2:69194561-69194580 MS.gene01417:CDS 55.0%
CTGCCTGTTGGCATTTGAGG+TGG + chr2.2:69194567-69194586 None:intergenic 55.0%
GTGGCACTATTACCCAGCCA+TGG - chr2.2:69194885-69194904 MS.gene01417:CDS 55.0%
TGCTGGTATCTCCCATGGCT+GGG + chr2.2:69194900-69194919 None:intergenic 55.0%
TTGCTGGTATCTCCCATGGC+TGG + chr2.2:69194901-69194920 None:intergenic 55.0%
! CCTGTTGGCATTTGAGGTGG+TGG + chr2.2:69194564-69194583 None:intergenic 55.0%
! GTTGGCATTTGAGGTGGTGG+TGG + chr2.2:69194561-69194580 None:intergenic 55.0%
!! GGCATTTGAGGTGGTGGTGG+AGG + chr2.2:69194558-69194577 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 69194200 69195027 69194200 ID=MS.gene01417
chr2.2 mRNA 69194200 69195027 69194200 ID=MS.gene01417.t1;Parent=MS.gene01417
chr2.2 exon 69194200 69195027 69194200 ID=MS.gene01417.t1.exon1;Parent=MS.gene01417.t1
chr2.2 CDS 69194200 69195027 69194200 ID=cds.MS.gene01417.t1;Parent=MS.gene01417.t1
Gene Sequence

>MS.gene01417

ATGGGCTTGAGTTCTAAGCAAGTTTCTAGTAGAGGTGTTGATTGGAACCAAACCTTGTTGCAAGATCAAAACTTGGAACTTCCAAAGACTCCTTCTATGAGAAAACAACAGCAACAAAATCAGCAACTAGAGGCAGTGAATTGTCCAAGATGTGACTCTACAAATACCAAGTTTTGTTACTACAATAACTATAACAAGTCTCAACCTCGCCATTTCTGCAGAGCTTGCAAGAGACATTGGACTAAAGGTGGTACTCTAAGGAATGTTCCTGTTGGTGGTGTTAGGAAGAATAAGAGAGTCAAGATATCAACCTCTCCAACTTCTATTAACACCACCTCAAAAACTACTATTAGCACCTCCACCACCACCTCAAATGCCAACAGGCAGAATAATAAAACCACACCTTCTTCTATGCATGAATCTCTTATTCATCCACCATCTTTTTTGCCACCACAGAATCTGATGAGTACCAAAGATCAATCAGAAGGTAATAATGAAGAGTTTGGTATTGGTAAGGACATGTTTCTGAGTTCATCTATGCCTTTTCCTCAATACCAAAGCTTTCTATTCCCATTCTCAAACTCAAGCTCTTTAAGGTCATCCAATGGATATAACTATGGTGAAGAGTTTAAAATAATGGAGGAATCAACTATTAACAACAGTGCAATGTTAAACACTAATGGTAGTGGCACTATTACCCAGCCATGGGAGATACCAGCAACAAGTAGTGGCATGGATATGTCAAACTATTGGAGTTGGGAGGATATTGATTCTTTGGTCTCAACTGATCTAAATGTTCCTTGGGATGATTCTGATATCAAACCTTGA
Protein sequence

>MS.gene01417.t1

MGLSSKQVSSRGVDWNQTLLQDQNLELPKTPSMRKQQQQNQQLEAVNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGVRKNKRVKISTSPTSINTTSKTTISTSTTTSNANRQNNKTTPSSMHESLIHPPSFLPPQNLMSTKDQSEGNNEEFGIGKDMFLSSSMPFPQYQSFLFPFSNSSSLRSSNGYNYGEEFKIMEESTINNSAMLNTNGSGTITQPWEIPATSSGMDMSNYWSWEDIDSLVSTDLNVPWDDSDIKP