AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014170.t1 MTR_7g092540 90.873 252 21 1 1 252 55 304 1.30e-169 471
MS.gene014170.t1 MTR_7g092540 90.873 252 21 1 1 252 55 304 3.05e-169 469
MS.gene014170.t1 MTR_1g052470 56.175 251 74 5 32 252 115 359 8.27e-78 240
MS.gene014170.t1 MTR_1g052470 51.208 207 65 5 32 208 115 315 2.32e-49 165
MS.gene014170.t1 MTR_2g098310 42.688 253 94 9 35 252 157 393 3.35e-45 156
MS.gene014170.t1 MTR_2g098310 42.688 253 94 9 35 252 157 393 4.16e-45 156
MS.gene014170.t1 MTR_6g052280 84.706 85 13 0 150 234 13 97 5.98e-44 145
MS.gene014170.t1 MTR_4g065870 38.710 248 119 6 33 252 174 416 2.11e-43 152
MS.gene014170.t1 MTR_4g065870 38.710 248 119 6 33 252 174 416 3.32e-43 152
MS.gene014170.t1 MTR_2g098310 37.413 286 93 10 35 250 157 426 3.08e-38 139
MS.gene014170.t1 MTR_3g028520 39.286 224 119 4 40 252 166 383 1.21e-37 136
MS.gene014170.t1 MTR_3g027650 39.286 224 119 4 40 252 166 383 1.21e-37 136
MS.gene014170.t1 MTR_3g027650 39.286 224 119 4 40 252 166 383 1.35e-37 136
MS.gene014170.t1 MTR_2g098310 39.316 234 91 9 35 233 157 374 1.34e-32 123
MS.gene014170.t1 MTR_4g033295 76.471 68 16 0 185 252 112 179 2.05e-30 112
MS.gene014170.t1 MTR_8g036235 34.237 295 130 5 2 252 103 377 2.16e-30 117
MS.gene014170.t1 MTR_4g033295 76.471 68 16 0 185 252 112 179 4.07e-30 111
MS.gene014170.t1 MTR_4g065870 33.624 229 120 4 33 232 174 399 5.00e-30 116
MS.gene014170.t1 MTR_1g116790 55.556 108 45 2 146 252 221 326 4.16e-29 112
MS.gene014170.t1 MTR_3g027650 35.323 201 113 4 40 229 166 360 2.69e-24 100
MS.gene014170.t1 MTR_4g033295 84.444 45 7 0 185 229 112 156 3.19e-20 85.5
MS.gene014170.t1 MTR_2g098310 34.742 213 88 9 31 208 153 349 2.28e-18 83.6
MS.gene014170.t1 MTR_8g036235 31.716 268 127 5 2 229 103 354 2.94e-18 83.6
MS.gene014170.t1 MTR_1g017350 54.839 62 28 0 191 252 260 321 5.31e-15 74.3
MS.gene014170.t1 MTR_1g017350 54.839 62 28 0 191 252 260 321 5.75e-15 73.9
MS.gene014170.t1 MTR_1g017350 54.839 62 28 0 191 252 260 321 5.94e-15 73.9
MS.gene014170.t1 MTR_1g017350 54.839 62 28 0 191 252 260 321 6.31e-15 73.9
MS.gene014170.t1 MTR_4g131160 56.452 62 26 1 191 252 196 256 7.49e-15 73.6
MS.gene014170.t1 MTR_4g131160 56.452 62 26 1 191 252 199 259 7.93e-15 73.6
MS.gene014170.t1 MTR_1g080890 52.174 69 32 1 184 252 186 253 2.17e-14 72.0
MS.gene014170.t1 MTR_3g498825 54.839 62 28 0 191 252 147 208 2.39e-14 71.6
MS.gene014170.t1 MTR_5g048860 53.226 62 29 0 191 252 365 426 6.61e-14 71.2
MS.gene014170.t1 MTR_8g012290 51.613 62 30 0 191 252 291 352 1.94e-13 69.7
MS.gene014170.t1 MTR_7g053410 51.613 62 30 0 191 252 317 378 1.96e-13 69.7
MS.gene014170.t1 MTR_8g012290 51.613 62 30 0 191 252 291 352 2.00e-13 69.7
MS.gene014170.t1 MTR_7g053410 51.613 62 30 0 191 252 317 378 2.07e-13 69.7
MS.gene014170.t1 MTR_3g116770 53.226 62 29 0 191 252 191 252 2.37e-13 69.3
MS.gene014170.t1 MTR_3g116770 53.226 62 29 0 191 252 191 252 2.38e-13 69.3
MS.gene014170.t1 MTR_8g065740 51.613 62 30 0 191 252 305 366 3.08e-13 69.3
MS.gene014170.t1 MTR_8g099880 50.000 62 31 0 191 252 145 206 2.29e-12 66.2
MS.gene014170.t1 MTR_4g070320 47.826 69 34 1 184 252 138 204 2.37e-12 66.2
MS.gene014170.t1 MTR_8g062240 48.387 62 32 0 191 252 151 212 4.93e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014170.t1 AT2G42280 48.673 226 97 6 36 252 125 340 5.98e-43 149
MS.gene014170.t1 AT2G42280 48.673 226 97 6 36 252 125 340 1.22e-42 149
MS.gene014170.t1 AT2G43140 62.766 94 34 1 160 252 102 195 1.58e-33 121
MS.gene014170.t1 AT1G51140 58.333 108 38 3 145 252 265 365 2.08e-33 124
MS.gene014170.t1 AT2G43140 62.766 94 34 1 160 252 199 292 7.74e-33 122
MS.gene014170.t1 AT1G05805 62.366 93 33 2 161 252 253 344 1.10e-29 114
MS.gene014170.t1 AT1G35460 70.000 70 21 0 183 252 173 242 1.54e-28 109
MS.gene014170.t1 AT4G09180 67.105 76 23 1 177 252 172 245 3.66e-27 105
MS.gene014170.t1 AT1G35460 76.596 47 11 0 183 229 173 219 9.58e-19 82.4
MS.gene014170.t1 AT2G24260 52.778 72 33 1 181 252 25 95 2.33e-15 73.6
MS.gene014170.t1 AT2G42280 40.110 182 90 6 36 208 125 296 5.14e-15 73.6
MS.gene014170.t1 AT2G24260 52.778 72 33 1 181 252 128 198 5.64e-15 73.9
MS.gene014170.t1 AT5G58010 56.452 62 26 1 191 252 99 159 6.84e-15 73.2
MS.gene014170.t1 AT4G30980 56.452 62 26 1 191 252 130 190 2.47e-14 71.6
MS.gene014170.t1 AT4G30980 56.452 62 26 1 191 252 178 238 2.90e-14 72.0
MS.gene014170.t1 AT1G10120 54.839 62 28 0 191 252 206 267 4.50e-14 71.2
MS.gene014170.t1 AT1G10120 54.839 62 28 0 191 252 206 267 4.50e-14 71.2
MS.gene014170.t1 AT5G50915 54.839 62 28 0 191 252 136 197 5.44e-14 70.5
MS.gene014170.t1 AT5G50915 54.839 62 28 0 191 252 136 197 5.44e-14 70.5
MS.gene014170.t1 AT5G50915 54.839 62 28 0 191 252 136 197 5.79e-14 70.1
MS.gene014170.t1 AT5G50915 54.839 62 28 0 191 252 136 197 5.79e-14 70.1
MS.gene014170.t1 AT1G68920 51.613 62 30 0 191 252 303 364 1.04e-13 70.5
MS.gene014170.t1 AT1G68920 51.613 62 30 0 191 252 303 364 1.04e-13 70.5
MS.gene014170.t1 AT1G68920 51.613 62 30 0 191 252 303 364 1.04e-13 70.5
MS.gene014170.t1 AT1G68920 51.613 62 30 0 191 252 302 363 1.07e-13 70.5
MS.gene014170.t1 AT4G34530 51.613 62 30 0 191 252 172 233 1.26e-13 69.7
MS.gene014170.t1 AT1G26260 53.226 62 29 0 191 252 223 284 1.81e-13 69.7
MS.gene014170.t1 AT1G26260 53.226 62 29 0 191 252 223 284 1.81e-13 69.7
MS.gene014170.t1 AT1G26260 53.226 62 29 0 191 252 223 284 1.81e-13 69.7
MS.gene014170.t1 AT1G26260 53.226 62 29 0 191 252 223 284 1.81e-13 69.7
MS.gene014170.t1 AT1G26260 53.226 62 29 0 191 252 201 262 1.91e-13 69.7
MS.gene014170.t1 AT1G26260 53.226 62 29 0 191 252 172 233 2.01e-13 69.3
MS.gene014170.t1 AT3G07340 51.613 62 30 0 191 252 258 319 3.94e-13 68.9
MS.gene014170.t1 AT3G07340 51.613 62 30 0 191 252 258 319 4.57e-13 68.6
MS.gene014170.t1 AT1G25330 48.387 62 32 0 191 252 104 165 5.97e-13 66.6
MS.gene014170.t1 AT5G48560 50.000 62 31 0 191 252 301 362 1.30e-12 67.4
MS.gene014170.t1 AT5G48560 50.000 62 31 0 191 252 301 362 1.31e-12 67.4
MS.gene014170.t1 AT4G36540 44.444 72 38 1 181 252 133 202 3.30e-12 65.5
MS.gene014170.t1 AT4G36540 44.444 72 38 1 181 252 133 202 3.35e-12 65.5
MS.gene014170.t1 AT1G18400 48.387 62 32 0 191 252 145 206 7.15e-12 63.9
MS.gene014170.t1 AT3G23690 48.387 62 32 0 191 252 191 252 7.51e-12 64.7
MS.gene014170.t1 AT1G18400 48.387 62 32 0 191 252 145 206 1.17e-11 63.5
MS.gene014170.t1 AT1G59640 48.387 62 32 0 191 252 136 197 1.77e-11 63.2
MS.gene014170.t1 AT2G18300 46.774 62 33 0 191 252 185 246 2.83e-11 63.2
MS.gene014170.t1 AT2G18300 46.774 62 33 0 191 252 185 246 2.85e-11 63.2
MS.gene014170.t1 AT2G18300 46.774 62 33 0 191 252 185 246 3.95e-11 62.8
MS.gene014170.t1 AT1G59640 48.387 62 32 0 191 252 136 197 7.13e-11 62.0

Find 51 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTCACCTTTATGATTAAA+AGG 0.243027 7.4:+16260670 None:intergenic
CTCAAGGAAGAAGGACTTCT+TGG 0.270896 7.4:+16259613 None:intergenic
CTTTATGATTAAAAGGATTA+TGG 0.272914 7.4:+16260677 None:intergenic
AACATATTGAACAATCAAAT+TGG 0.290694 7.4:-16259643 MS.gene014170:CDS
ACCCTTTCGGCAAGGCTTCT+AGG 0.305032 7.4:+16259216 None:intergenic
CCGAGTTCTTCTTACCCTTT+CGG 0.326997 7.4:+16259203 None:intergenic
ATGCTGCTCGGAACAGAATC+TGG 0.330247 7.4:+16259267 None:intergenic
AATGTTTATTGTGGAGAATT+TGG 0.338878 7.4:-16259298 MS.gene014170:CDS
AATGAGGATGCTCAATATTA+TGG 0.342968 7.4:-16259511 MS.gene014170:CDS
ATTCTGACCTTATCAATGTT+TGG 0.345820 7.4:+16259144 None:intergenic
AACAACAACATCATCTCCTT+TGG 0.393746 7.4:-16260520 MS.gene014170:CDS
TCCTAGAAGCCTTGCCGAAA+GGG 0.399735 7.4:-16259217 MS.gene014170:CDS
AACATCATCTCCTTTGGAAA+TGG 0.414195 7.4:-16260514 MS.gene014170:intron
CTCTTTGCTCTGATGCTGCT+CGG 0.438402 7.4:+16259255 None:intergenic
ACCACTCTGTCTTAAAAGAT+TGG 0.442108 7.4:+16260564 None:intergenic
AAAGGAGATGATGTTGTTGT+TGG 0.459546 7.4:+16260522 None:intergenic
TCGGAACAGAATCTGGAAAC+TGG 0.461159 7.4:+16259274 None:intergenic
CATTTATGATTCTAATGACC+AGG 0.461256 7.4:-16259479 MS.gene014170:intron
GGTTGTTCCAAACATTGATA+AGG 0.462084 7.4:-16259151 MS.gene014170:intron
AGACAGAGTGGTTCCCATGC+TGG 0.479729 7.4:-16260553 MS.gene014170:CDS
AAAGGTGTTGAAAACTATGA+TGG 0.487777 7.4:-16259703 MS.gene014170:CDS
CACATCAGAAATGTTAGACT+TGG 0.499859 7.4:-16259025 MS.gene014170:CDS
AAGACACATGAATTCTCAGC+AGG 0.502231 7.4:-16260620 MS.gene014170:CDS
TTCTCAGCAGGGTTATAGAA+TGG 0.503073 7.4:-16260608 MS.gene014170:CDS
ATCATCAGAAATGTTTATTG+TGG 0.507405 7.4:-16259307 MS.gene014170:CDS
TTGATGTTACTCAGAACGTA+GGG 0.512000 7.4:-16259380 MS.gene014170:intron
GATAACATTCTCAAGGAAGA+AGG 0.538937 7.4:+16259604 None:intergenic
ATCCTAGAAGCCTTGCCGAA+AGG 0.543719 7.4:-16259218 MS.gene014170:CDS
AACTCTAAAACGAGGAGTGA+TGG 0.547308 7.4:-16259577 MS.gene014170:CDS
TTCTTCTTACCCTTTCGGCA+AGG 0.550067 7.4:+16259208 None:intergenic
CCGAAAGGGTAAGAAGAACT+CGG 0.565752 7.4:-16259203 MS.gene014170:CDS
CTCCTTGTCTTCGATCATCA+CGG 0.577461 7.4:+16259539 None:intergenic
AAAACGAGGAGTGATGGCAT+TGG 0.578334 7.4:-16259571 MS.gene014170:CDS
GCAGGGTATGAATCTATGAA+AGG 0.606763 7.4:-16259721 MS.gene014170:intron
TTTGATGTTACTCAGAACGT+AGG 0.607876 7.4:-16259381 MS.gene014170:intron
AAGGTGTTGAAAACTATGAT+GGG 0.612325 7.4:-16259702 MS.gene014170:CDS
GTTATGTGATAACATTCTCA+AGG 0.612399 7.4:+16259597 None:intergenic
TACTACAATACCATTTCCAA+AGG 0.613692 7.4:+16260504 None:intergenic
AGCAGCATCAGAGCAAAGAG+AGG 0.624459 7.4:-16259252 MS.gene014170:CDS
ACGAATGAGAAAATTGCAAG+AGG 0.630200 7.4:-16259172 MS.gene014170:CDS
TATAGAATGGATCAACACAA+AGG 0.657311 7.4:-16260595 MS.gene014170:CDS
AGCCGTGATGATCGAAGACA+AGG 0.662100 7.4:-16259541 MS.gene014170:CDS
GTTGGAGAAATGACCAGCAT+GGG 0.675608 7.4:+16260540 None:intergenic
TGTTGGAGAAATGACCAGCA+TGG 0.677077 7.4:+16260539 None:intergenic
CGTGATGATCGAAGACAAGG+AGG 0.691311 7.4:-16259538 MS.gene014170:CDS
AGACACATGAATTCTCAGCA+GGG 0.696388 7.4:-16260619 MS.gene014170:CDS
GATGGGGTGAATGACAGTGA+TGG 0.701721 7.4:-16259685 MS.gene014170:CDS
TGATGTTACTCAGAACGTAG+GGG 0.704763 7.4:-16259379 MS.gene014170:intron
AAGACAAGGAGGTAGCAATG+AGG 0.720936 7.4:-16259527 MS.gene014170:CDS
AGGTGTTGAAAACTATGATG+GGG 0.756832 7.4:-16259701 MS.gene014170:CDS
TATCACATAACTCTAAAACG+AGG 0.781502 7.4:-16259585 MS.gene014170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAACATAACTTTTTTT+AGG - chr7.4:16259465-16259484 MS.gene014170:intron 10.0%
!! AAAAAAGTTATTTATGTACA+AGG - chr7.4:16259706-16259725 MS.gene014170:CDS 15.0%
!! AAAAACATAATTGTCTTAAA+AGG + chr7.4:16260580-16260599 None:intergenic 15.0%
!! AAAAAGTTATTTATGTACAA+GGG - chr7.4:16259707-16259726 MS.gene014170:CDS 15.0%
!! AAAACATAATTGTCTTAAAA+GGG + chr7.4:16260579-16260598 None:intergenic 15.0%
!! GCTAAATCTAAAAAAAAAAT+GGG - chr7.4:16259499-16259518 MS.gene014170:CDS 15.0%
!! TGCTAAATCTAAAAAAAAAA+TGG - chr7.4:16259498-16259517 MS.gene014170:CDS 15.0%
!! TTATCATTAAGAATAGAATT+CGG - chr7.4:16259540-16259559 MS.gene014170:CDS 15.0%
!!! AGTTAAACATTGTTTAATTT+TGG - chr7.4:16260610-16260629 MS.gene014170:CDS 15.0%
!! AAACATAATTGTCTTAAAAG+GGG + chr7.4:16260578-16260597 None:intergenic 20.0%
!! AACAATTTCTGTCTAATTTA+TGG - chr7.4:16259760-16259779 MS.gene014170:intron 20.0%
!! AACATATTGAACAATCAAAT+TGG - chr7.4:16260026-16260045 MS.gene014170:intron 20.0%
!! CTTTATGATTAAAAGGATTA+TGG + chr7.4:16258995-16259014 None:intergenic 20.0%
!!! ATTCTATTTTAAGAAAGTGT+AGG + chr7.4:16259298-16259317 None:intergenic 20.0%
!!! ATTTAGTGTTAAATGACTTT+TGG - chr7.4:16259440-16259459 MS.gene014170:intron 20.0%
!!! CATAATCCTTTTAATCATAA+AGG - chr7.4:16258993-16259012 MS.gene014170:CDS 20.0%
!!! TTCTATTTTAAGAAAGTGTA+GGG + chr7.4:16259297-16259316 None:intergenic 20.0%
! AACATAATTGTCTTAAAAGG+GGG + chr7.4:16260577-16260596 None:intergenic 25.0%
! AATGTTTATTGTGGAGAATT+TGG - chr7.4:16260371-16260390 MS.gene014170:intron 25.0%
! ACTAAAATTGTATCTTGTGT+TGG + chr7.4:16259400-16259419 None:intergenic 25.0%
! ATCATCAGAAATGTTTATTG+TGG - chr7.4:16260362-16260381 MS.gene014170:intron 25.0%
! GCATATAAATGTAAATTGCA+GGG - chr7.4:16259931-16259950 MS.gene014170:intron 25.0%
! TGCATATAAATGTAAATTGC+AGG - chr7.4:16259930-16259949 MS.gene014170:intron 25.0%
! TGTATTTCATTGTAGTTACA+TGG - chr7.4:16259627-16259646 MS.gene014170:CDS 25.0%
! TTGTCACCTTTATGATTAAA+AGG + chr7.4:16259002-16259021 None:intergenic 25.0%
!! AACATTTCTGATGATTTTCT+TGG + chr7.4:16260357-16260376 None:intergenic 25.0%
!! TTTCTTCTAGACAACTTTTT+AGG - chr7.4:16259243-16259262 MS.gene014170:CDS 25.0%
!!! GCAATTTTTTGTGAATATAG+TGG - chr7.4:16259358-16259377 MS.gene014170:CDS 25.0%
AAGTTAACCTGTTATATACC+TGG + chr7.4:16260211-16260230 None:intergenic 30.0%
AAGTTATTTATGTACAAGGG+AGG - chr7.4:16259710-16259729 MS.gene014170:CDS 30.0%
AATGAGGATGCTCAATATTA+TGG - chr7.4:16260158-16260177 MS.gene014170:intron 30.0%
AATTGCGAATCAGCAAAATT+AGG + chr7.4:16260269-16260288 None:intergenic 30.0%
ATTCTGACCTTATCAATGTT+TGG + chr7.4:16260528-16260547 None:intergenic 30.0%
CATTTATGATTCTAATGACC+AGG - chr7.4:16260190-16260209 MS.gene014170:intron 30.0%
CTAATGTGATTCATATTGCT+AGG + chr7.4:16259884-16259903 None:intergenic 30.0%
GATTCAAATCATGAGATAGT+AGG - chr7.4:16259799-16259818 MS.gene014170:intron 30.0%
GTTATGTGATAACATTCTCA+AGG + chr7.4:16260075-16260094 None:intergenic 30.0%
TACTACAATACCATTTCCAA+AGG + chr7.4:16259168-16259187 None:intergenic 30.0%
TAGGAGACAAAATTGCATTT+AGG + chr7.4:16260250-16260269 None:intergenic 30.0%
TATAGAATGGATCAACACAA+AGG - chr7.4:16259074-16259093 MS.gene014170:intron 30.0%
! CTAGTTCAATGTTTCTTTTG+GGG - chr7.4:16259266-16259285 MS.gene014170:CDS 30.0%
! GCTAGTTCAATGTTTCTTTT+GGG - chr7.4:16259265-16259284 MS.gene014170:CDS 30.0%
! TAGTTCAATGTTTCTTTTGG+GGG - chr7.4:16259267-16259286 MS.gene014170:CDS 30.0%
!! AAAGGTGTTGAAAACTATGA+TGG - chr7.4:16259966-16259985 MS.gene014170:intron 30.0%
!! AAGGTGTTGAAAACTATGAT+GGG - chr7.4:16259967-16259986 MS.gene014170:intron 30.0%
!! TATCACATAACTCTAAAACG+AGG - chr7.4:16260084-16260103 MS.gene014170:intron 30.0%
AAAGGAGATGATGTTGTTGT+TGG + chr7.4:16259150-16259169 None:intergenic 35.0%
AAATGCTAAACAAGCATAGG+TGG - chr7.4:16259834-16259853 MS.gene014170:intron 35.0%
AACAACAACATCATCTCCTT+TGG - chr7.4:16259149-16259168 MS.gene014170:intron 35.0%
ACCACTCTGTCTTAAAAGAT+TGG + chr7.4:16259108-16259127 None:intergenic 35.0%
ACGAATGAGAAAATTGCAAG+AGG - chr7.4:16260497-16260516 MS.gene014170:intron 35.0%
CACAAATGCTAAACAAGCAT+AGG - chr7.4:16259831-16259850 MS.gene014170:intron 35.0%
CACATCAGAAATGTTAGACT+TGG - chr7.4:16260644-16260663 MS.gene014170:CDS 35.0%
CTAATGACCAGGTATATAAC+AGG - chr7.4:16260201-16260220 MS.gene014170:intron 35.0%
CTAATTCTAACGCTATTCGT+TGG + chr7.4:16259601-16259620 None:intergenic 35.0%
CTATGCTTGTTTAGCATTTG+TGG + chr7.4:16259833-16259852 None:intergenic 35.0%
GATAACATTCTCAAGGAAGA+AGG + chr7.4:16260068-16260087 None:intergenic 35.0%
GGTTGTTCCAAACATTGATA+AGG - chr7.4:16260518-16260537 MS.gene014170:CDS 35.0%
TTGATGTTACTCAGAACGTA+GGG - chr7.4:16260289-16260308 MS.gene014170:intron 35.0%
TTTGATGTTACTCAGAACGT+AGG - chr7.4:16260288-16260307 MS.gene014170:intron 35.0%
! AACATCATCTCCTTTGGAAA+TGG - chr7.4:16259155-16259174 MS.gene014170:CDS 35.0%
!! AGGTGTTGAAAACTATGATG+GGG - chr7.4:16259968-16259987 MS.gene014170:intron 35.0%
!! GGCTAGTTCAATGTTTCTTT+TGG - chr7.4:16259264-16259283 MS.gene014170:CDS 35.0%
!!! ACCAATCTTTTAAGACAGAG+TGG - chr7.4:16259104-16259123 MS.gene014170:intron 35.0%
AAGACACATGAATTCTCAGC+AGG - chr7.4:16259049-16259068 MS.gene014170:intron 40.0%
AGACACATGAATTCTCAGCA+GGG - chr7.4:16259050-16259069 MS.gene014170:intron 40.0%
GCAGGGTATGAATCTATGAA+AGG - chr7.4:16259948-16259967 MS.gene014170:intron 40.0%
GTGAATATAGTGGTCAGCTA+AGG - chr7.4:16259368-16259387 MS.gene014170:CDS 40.0%
TATAGTGGTCAGCTAAGGTT+TGG - chr7.4:16259373-16259392 MS.gene014170:intron 40.0%
TGATGTTACTCAGAACGTAG+GGG - chr7.4:16260290-16260309 MS.gene014170:intron 40.0%
TTCTCAGCAGGGTTATAGAA+TGG - chr7.4:16259061-16259080 MS.gene014170:intron 40.0%
!! AACTCTAAAACGAGGAGTGA+TGG - chr7.4:16260092-16260111 MS.gene014170:intron 40.0%
AAAACGAGGAGTGATGGCAT+TGG - chr7.4:16260098-16260117 MS.gene014170:intron 45.0%
AAGACAAGGAGGTAGCAATG+AGG - chr7.4:16260142-16260161 MS.gene014170:intron 45.0%
CCGAAAGGGTAAGAAGAACT+CGG - chr7.4:16260466-16260485 MS.gene014170:intron 45.0%
CCGAGTTCTTCTTACCCTTT+CGG + chr7.4:16260469-16260488 None:intergenic 45.0%
CTCAAGGAAGAAGGACTTCT+TGG + chr7.4:16260059-16260078 None:intergenic 45.0%
CTCCTTGTCTTCGATCATCA+CGG + chr7.4:16260133-16260152 None:intergenic 45.0%
GTTGGAGAAATGACCAGCAT+GGG + chr7.4:16259132-16259151 None:intergenic 45.0%
TCGGAACAGAATCTGGAAAC+TGG + chr7.4:16260398-16260417 None:intergenic 45.0%
TGTTGGAGAAATGACCAGCA+TGG + chr7.4:16259133-16259152 None:intergenic 45.0%
TTCTTCTTACCCTTTCGGCA+AGG + chr7.4:16260464-16260483 None:intergenic 45.0%
!!! TTAACTTTTTTTTTTTTATT+AGG - chr7.4:16260224-16260243 MS.gene014170:intron 5.0%
AGCAGCATCAGAGCAAAGAG+AGG - chr7.4:16260417-16260436 MS.gene014170:intron 50.0%
AGCCGTGATGATCGAAGACA+AGG - chr7.4:16260128-16260147 MS.gene014170:intron 50.0%
ATCCTAGAAGCCTTGCCGAA+AGG - chr7.4:16260451-16260470 MS.gene014170:intron 50.0%
ATGCTGCTCGGAACAGAATC+TGG + chr7.4:16260405-16260424 None:intergenic 50.0%
CGTGATGATCGAAGACAAGG+AGG - chr7.4:16260131-16260150 MS.gene014170:intron 50.0%
CTCTTTGCTCTGATGCTGCT+CGG + chr7.4:16260417-16260436 None:intergenic 50.0%
GATGGGGTGAATGACAGTGA+TGG - chr7.4:16259984-16260003 MS.gene014170:intron 50.0%
TCCTAGAAGCCTTGCCGAAA+GGG - chr7.4:16260452-16260471 MS.gene014170:intron 50.0%
ACCCTTTCGGCAAGGCTTCT+AGG + chr7.4:16260456-16260475 None:intergenic 55.0%
AGACAGAGTGGTTCCCATGC+TGG - chr7.4:16259116-16259135 MS.gene014170:intron 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 16258987 16260704 16258987 ID=MS.gene014170
chr7.4 mRNA 16258987 16260704 16258987 ID=MS.gene014170.t1;Parent=MS.gene014170
chr7.4 exon 16260515 16260704 16260515 ID=MS.gene014170.t1.exon1;Parent=MS.gene014170.t1
chr7.4 CDS 16260515 16260704 16260515 ID=cds.MS.gene014170.t1;Parent=MS.gene014170.t1
chr7.4 exon 16259480 16259739 16259480 ID=MS.gene014170.t1.exon2;Parent=MS.gene014170.t1
chr7.4 CDS 16259480 16259739 16259480 ID=cds.MS.gene014170.t1;Parent=MS.gene014170.t1
chr7.4 exon 16259152 16259388 16259152 ID=MS.gene014170.t1.exon3;Parent=MS.gene014170.t1
chr7.4 CDS 16259152 16259388 16259152 ID=cds.MS.gene014170.t1;Parent=MS.gene014170.t1
chr7.4 exon 16258987 16259055 16258987 ID=MS.gene014170.t1.exon4;Parent=MS.gene014170.t1
chr7.4 CDS 16258987 16259055 16258987 ID=cds.MS.gene014170.t1;Parent=MS.gene014170.t1
Gene Sequence

>MS.gene014170

ATGGACCATAATCCTTTTAATCATAAAGGTGACAACAACAACAACGAGTCTTCATTATCTCAAAGACACATGAATTCTCAGCAGGGTTATAGAATGGATCAACACAAAGGTTTTTATACCAATCTTTTAAGACAGAGTGGTTCCCATGCTGGTCATTTCTCCAACAACAACATCATCTCCTTTGGAAATGGTATTGTAGTACTTTTTCTATTTCTGTTTTTTGTCTTGATTTTGACTTTTTTGTTCAATGATTTAATTTCTTCTAGACAACTTTTTAGGCTAGTTCAATGTTTCTTTTGGGGGCTGTCCCTACACTTTCTTAAAATAGAATTTGAAATTATAATTAATATTTTGTGCTCAAGAAATAGAGTGCAATTTTTTGTGAATATAGTGGTCAGCTAAGGTTTGGTCCAACACAAGATACAATTTTAGTCATCGTAGAGAGACATTTGCATTTAGTGTTAAATGACTTTTGGAAATTAAAACATAACTTTTTTTAGGACAGACATGTTGCTAAATCTAAAAAAAAAATGGGAGCTAAATCAATTTTTTTTTATCATTAAGAATAGAATTCGGAATTTTGAGTTTACAACACTCACACATACTATGCACCAACGAATAGCGTTAGAATTAGATAGATTGTATTTCATTGTAGTTACATGGATATTCAACATAAATATATAACGTATACATAAGTTATTTATGTGTGTAACAAAAAAAAAAAAGTTATTTATGTACAAGGGAGGCATTTATGTCTAATTATTATTTTTTTTAACAATTTCTGTCTAATTTATGGTTGTTTATAATTTGCTGATTCAAATCATGAGATAGTAGGACTTAATTCCACAAATGCTAAACAAGCATAGGTGGATTCATTCTCTGAAGATTTATTTACCTAGCAATATGAATCACATTAGATTTTCACATTTTTAAACATTATTTATGCATATAAATGTAAATTGCAGGGTATGAATCTATGAAAGGTGTTGAAAACTATGATGGGGTGAATGACAGTGATGGTGAACTTACTCTATCTATGAACATATTGAACAATCAAATTGGCTTCTCACCAAGAAGTCCTTCTTCCTTGAGAATGTTATCACATAACTCTAAAACGAGGAGTGATGGCATTGGAACAACTAGCCGTGATGATCGAAGACAAGGAGGTAGCAATGAGGATGCTCAATATTATGGTCATAAATTCATTTATGATTCTAATGACCAGGTATATAACAGGTTAACTTTTTTTTTTTTATTAGGCCTAAATGCAATTTTGTCTCCTAATTTTGCTGATTCGCAATTTTGATGTTACTCAGAACGTAGGGGTACGAAATCAAGTTGATACACTATCACATCAGTTGAGTTTGCCAAGAAAATCATCAGAAATGTTTATTGTGGAGAATTTGGTCCAGTTTCCAGATTCTGTTCCGAGCAGCATCAGAGCAAAGAGAGGCTTTGCAACACATCCTAGAAGCCTTGCCGAAAGGGTAAGAAGAACTCGGATAAGTGAACGAATGAGAAAATTGCAAGAGGTTGTTCCAAACATTGATAAGGTCAGAATCATCATCACACAGTTGTTGATTTTTTCCCCCTTTTAAGACAATTATGTTTTTGTGTTTAGAAAGTTAAACATTGTTTAATTTTGGCAGCAAACTTGCACATCAGAAATGTTAGACTTGGCTGTAGAGTACATTAAAGATCTTCAAAAACAATTAAAG
Protein sequence

>MS.gene014170.t1

MDHNPFNHKGDNNNNESSLSQRHMNSQQGYRMDQHKGFYTNLLRQSGSHAGHFSNNNIISFGNGYESMKGVENYDGVNDSDGELTLSMNILNNQIGFSPRSPSSLRMLSHNSKTRSDGIGTTSRDDRRQGGSNEDAQYYGHKFIYDSNDQNVGVRNQVDTLSHQLSLPRKSSEMFIVENLVQFPDSVPSSIRAKRGFATHPRSLAERVRRTRISERMRKLQEVVPNIDKQTCTSEMLDLAVEYIKDLQKQLK