Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014171.t1 | XP_003625199.1 | 91.9 | 160 | 13 | 0 | 1 | 160 | 159 | 318 | 6.20E-74 | 287 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014171.t1 | Q66GR3 | 63.7 | 124 | 42 | 1 | 44 | 164 | 235 | 358 | 4.1e-34 | 146.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014171.t1 | G7KUF7 | 91.9 | 160 | 13 | 0 | 1 | 160 | 159 | 318 | 4.4e-74 | 287.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene014171.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014171.t1 | MTR_7g092540 | 91.875 | 160 | 13 | 0 | 1 | 160 | 159 | 318 | 8.94e-107 | 308 |
MS.gene014171.t1 | MTR_7g092540 | 89.262 | 149 | 16 | 0 | 1 | 149 | 159 | 307 | 8.40e-96 | 280 |
MS.gene014171.t1 | MTR_1g052470 | 57.377 | 183 | 49 | 3 | 1 | 157 | 191 | 370 | 6.59e-61 | 193 |
MS.gene014171.t1 | MTR_4g065870 | 66.667 | 108 | 36 | 0 | 55 | 162 | 325 | 432 | 1.54e-46 | 157 |
MS.gene014171.t1 | MTR_6g052280 | 83.721 | 86 | 14 | 0 | 44 | 129 | 13 | 98 | 2.94e-45 | 145 |
MS.gene014171.t1 | MTR_2g098310 | 65.741 | 108 | 37 | 0 | 55 | 162 | 302 | 409 | 2.40e-44 | 151 |
MS.gene014171.t1 | MTR_2g098310 | 70.526 | 95 | 28 | 0 | 55 | 149 | 302 | 396 | 1.95e-41 | 144 |
MS.gene014171.t1 | MTR_3g028520 | 51.079 | 139 | 66 | 1 | 27 | 165 | 266 | 402 | 2.10e-40 | 141 |
MS.gene014171.t1 | MTR_3g027650 | 51.079 | 139 | 66 | 1 | 27 | 165 | 266 | 402 | 2.10e-40 | 141 |
MS.gene014171.t1 | MTR_4g065870 | 69.565 | 92 | 28 | 0 | 55 | 146 | 325 | 416 | 4.02e-40 | 140 |
MS.gene014171.t1 | MTR_2g098310 | 49.650 | 143 | 37 | 1 | 55 | 162 | 302 | 444 | 4.13e-37 | 133 |
MS.gene014171.t1 | MTR_3g027650 | 55.833 | 120 | 51 | 1 | 27 | 146 | 266 | 383 | 1.20e-36 | 131 |
MS.gene014171.t1 | MTR_4g033295 | 69.620 | 79 | 24 | 0 | 79 | 157 | 112 | 190 | 2.53e-34 | 120 |
MS.gene014171.t1 | MTR_8g036235 | 58.772 | 114 | 47 | 0 | 44 | 157 | 275 | 388 | 2.57e-33 | 122 |
MS.gene014171.t1 | MTR_1g116790 | 52.101 | 119 | 54 | 2 | 40 | 157 | 221 | 337 | 2.83e-31 | 115 |
MS.gene014171.t1 | MTR_4g033295 | 74.286 | 70 | 18 | 0 | 79 | 148 | 112 | 181 | 5.64e-31 | 111 |
MS.gene014171.t1 | MTR_2g098310 | 68.493 | 73 | 23 | 0 | 55 | 127 | 302 | 374 | 1.35e-27 | 107 |
MS.gene014171.t1 | MTR_1g052470 | 50.000 | 128 | 35 | 3 | 1 | 102 | 191 | 315 | 8.59e-27 | 103 |
MS.gene014171.t1 | MTR_4g065870 | 66.667 | 69 | 23 | 0 | 55 | 123 | 325 | 393 | 2.31e-26 | 103 |
MS.gene014171.t1 | MTR_3g027650 | 51.546 | 97 | 45 | 1 | 27 | 123 | 266 | 360 | 2.70e-23 | 94.7 |
MS.gene014171.t1 | MTR_4g033295 | 84.444 | 45 | 7 | 0 | 79 | 123 | 112 | 156 | 2.61e-20 | 83.6 |
MS.gene014171.t1 | MTR_4g131160 | 54.412 | 68 | 30 | 1 | 85 | 152 | 199 | 265 | 1.20e-16 | 76.6 |
MS.gene014171.t1 | MTR_4g131160 | 54.412 | 68 | 30 | 1 | 85 | 152 | 196 | 262 | 1.21e-16 | 76.6 |
MS.gene014171.t1 | MTR_1g017350 | 52.113 | 71 | 34 | 0 | 85 | 155 | 260 | 330 | 1.23e-16 | 76.6 |
MS.gene014171.t1 | MTR_1g017350 | 52.113 | 71 | 34 | 0 | 85 | 155 | 260 | 330 | 1.25e-16 | 76.6 |
MS.gene014171.t1 | MTR_1g017350 | 52.113 | 71 | 34 | 0 | 85 | 155 | 260 | 330 | 1.40e-16 | 76.6 |
MS.gene014171.t1 | MTR_1g017350 | 52.113 | 71 | 34 | 0 | 85 | 155 | 260 | 330 | 1.41e-16 | 76.6 |
MS.gene014171.t1 | MTR_8g036235 | 57.500 | 80 | 34 | 0 | 44 | 123 | 275 | 354 | 1.57e-16 | 76.3 |
MS.gene014171.t1 | MTR_1g080890 | 50.667 | 75 | 36 | 1 | 78 | 152 | 186 | 259 | 4.37e-16 | 75.1 |
MS.gene014171.t1 | MTR_5g048860 | 50.000 | 74 | 37 | 0 | 85 | 158 | 365 | 438 | 5.20e-16 | 75.1 |
MS.gene014171.t1 | MTR_3g498825 | 53.731 | 67 | 31 | 0 | 85 | 151 | 147 | 213 | 7.44e-16 | 73.9 |
MS.gene014171.t1 | MTR_7g053410 | 48.649 | 74 | 38 | 0 | 85 | 158 | 317 | 390 | 1.13e-15 | 74.3 |
MS.gene014171.t1 | MTR_7g053410 | 48.649 | 74 | 38 | 0 | 85 | 158 | 317 | 390 | 1.20e-15 | 74.3 |
MS.gene014171.t1 | MTR_3g116770 | 50.000 | 74 | 37 | 0 | 85 | 158 | 191 | 264 | 1.29e-15 | 73.9 |
MS.gene014171.t1 | MTR_3g116770 | 50.000 | 74 | 37 | 0 | 85 | 158 | 191 | 264 | 1.31e-15 | 73.9 |
MS.gene014171.t1 | MTR_8g065740 | 50.725 | 69 | 34 | 0 | 85 | 153 | 305 | 373 | 3.92e-15 | 72.4 |
MS.gene014171.t1 | MTR_8g012290 | 45.946 | 74 | 40 | 0 | 85 | 158 | 291 | 364 | 7.03e-15 | 72.0 |
MS.gene014171.t1 | MTR_8g012290 | 45.946 | 74 | 40 | 0 | 85 | 158 | 291 | 364 | 7.03e-15 | 72.0 |
MS.gene014171.t1 | MTR_4g070320 | 45.679 | 81 | 42 | 1 | 78 | 158 | 138 | 216 | 9.90e-15 | 70.9 |
MS.gene014171.t1 | MTR_8g099880 | 49.275 | 69 | 35 | 0 | 85 | 153 | 145 | 213 | 2.70e-14 | 69.7 |
MS.gene014171.t1 | MTR_2g098310 | 66.667 | 48 | 16 | 0 | 55 | 102 | 302 | 349 | 3.58e-14 | 69.7 |
MS.gene014171.t1 | MTR_8g062240 | 44.595 | 74 | 41 | 0 | 85 | 158 | 151 | 224 | 2.16e-13 | 66.6 |
MS.gene014171.t1 | MTR_5g037250 | 43.243 | 74 | 42 | 0 | 85 | 158 | 112 | 185 | 2.33e-12 | 63.5 |
MS.gene014171.t1 | MTR_7g092510 | 41.892 | 74 | 43 | 0 | 85 | 158 | 173 | 246 | 3.12e-12 | 63.9 |
MS.gene014171.t1 | MTR_1g018090 | 53.846 | 65 | 29 | 1 | 86 | 150 | 275 | 338 | 8.42e-12 | 62.8 |
MS.gene014171.t1 | MTR_3g103030 | 50.769 | 65 | 31 | 1 | 86 | 150 | 230 | 293 | 1.57e-11 | 62.0 |
MS.gene014171.t1 | MTR_1g059270 | 40.845 | 71 | 42 | 0 | 85 | 155 | 160 | 230 | 3.03e-11 | 61.2 |
MS.gene014171.t1 | MTR_1g059270 | 42.029 | 69 | 40 | 0 | 85 | 153 | 160 | 228 | 3.99e-11 | 60.1 |
MS.gene014171.t1 | MTR_5g005110 | 50.769 | 65 | 31 | 1 | 86 | 150 | 225 | 288 | 7.29e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014171.t1 | AT2G42280 | 65.000 | 120 | 39 | 1 | 44 | 160 | 235 | 354 | 1.31e-45 | 153 |
MS.gene014171.t1 | AT2G42280 | 67.290 | 107 | 32 | 1 | 44 | 147 | 235 | 341 | 1.16e-39 | 138 |
MS.gene014171.t1 | AT1G51140 | 57.143 | 119 | 44 | 3 | 39 | 157 | 265 | 376 | 9.07e-39 | 136 |
MS.gene014171.t1 | AT2G43140 | 58.095 | 105 | 43 | 1 | 54 | 157 | 102 | 206 | 8.92e-37 | 127 |
MS.gene014171.t1 | AT2G43140 | 58.095 | 105 | 43 | 1 | 54 | 157 | 199 | 303 | 3.73e-36 | 127 |
MS.gene014171.t1 | AT1G05805 | 55.856 | 111 | 47 | 2 | 55 | 164 | 253 | 362 | 1.86e-33 | 122 |
MS.gene014171.t1 | AT1G35460 | 61.628 | 86 | 33 | 0 | 77 | 162 | 173 | 258 | 2.80e-33 | 119 |
MS.gene014171.t1 | AT4G09180 | 59.783 | 92 | 35 | 1 | 71 | 162 | 172 | 261 | 3.12e-31 | 114 |
MS.gene014171.t1 | AT1G35460 | 76.596 | 47 | 11 | 0 | 77 | 123 | 173 | 219 | 1.86e-18 | 79.7 |
MS.gene014171.t1 | AT2G24260 | 51.282 | 78 | 37 | 1 | 75 | 152 | 25 | 101 | 4.01e-17 | 76.6 |
MS.gene014171.t1 | AT5G58010 | 54.412 | 68 | 30 | 1 | 85 | 152 | 99 | 165 | 8.74e-17 | 76.3 |
MS.gene014171.t1 | AT2G24260 | 55.882 | 68 | 29 | 1 | 85 | 152 | 138 | 204 | 1.11e-16 | 76.6 |
MS.gene014171.t1 | AT4G30980 | 54.412 | 68 | 30 | 1 | 85 | 152 | 130 | 196 | 2.85e-16 | 75.1 |
MS.gene014171.t1 | AT4G30980 | 54.412 | 68 | 30 | 1 | 85 | 152 | 178 | 244 | 3.50e-16 | 75.1 |
MS.gene014171.t1 | AT1G10120 | 53.623 | 69 | 32 | 0 | 85 | 153 | 206 | 274 | 6.91e-16 | 74.3 |
MS.gene014171.t1 | AT1G10120 | 53.623 | 69 | 32 | 0 | 85 | 153 | 206 | 274 | 6.91e-16 | 74.3 |
MS.gene014171.t1 | AT4G34530 | 48.649 | 74 | 38 | 0 | 85 | 158 | 172 | 245 | 1.03e-15 | 73.9 |
MS.gene014171.t1 | AT5G50915 | 53.731 | 67 | 31 | 0 | 85 | 151 | 136 | 202 | 1.94e-15 | 72.4 |
MS.gene014171.t1 | AT5G50915 | 53.731 | 67 | 31 | 0 | 85 | 151 | 136 | 202 | 1.94e-15 | 72.4 |
MS.gene014171.t1 | AT5G50915 | 53.731 | 67 | 31 | 0 | 85 | 151 | 136 | 202 | 1.97e-15 | 72.4 |
MS.gene014171.t1 | AT5G50915 | 53.731 | 67 | 31 | 0 | 85 | 151 | 136 | 202 | 1.97e-15 | 72.4 |
MS.gene014171.t1 | AT1G68920 | 50.725 | 69 | 34 | 0 | 85 | 153 | 302 | 370 | 2.24e-15 | 73.6 |
MS.gene014171.t1 | AT1G68920 | 50.725 | 69 | 34 | 0 | 85 | 153 | 303 | 371 | 2.37e-15 | 73.2 |
MS.gene014171.t1 | AT1G68920 | 50.725 | 69 | 34 | 0 | 85 | 153 | 303 | 371 | 2.37e-15 | 73.2 |
MS.gene014171.t1 | AT1G68920 | 50.725 | 69 | 34 | 0 | 85 | 153 | 303 | 371 | 2.37e-15 | 73.2 |
MS.gene014171.t1 | AT3G07340 | 47.297 | 74 | 39 | 0 | 85 | 158 | 258 | 331 | 4.51e-15 | 72.4 |
MS.gene014171.t1 | AT3G07340 | 47.297 | 74 | 39 | 0 | 85 | 158 | 258 | 331 | 4.98e-15 | 72.4 |
MS.gene014171.t1 | AT1G26260 | 52.239 | 67 | 32 | 0 | 85 | 151 | 223 | 289 | 1.35e-14 | 70.9 |
MS.gene014171.t1 | AT1G26260 | 52.239 | 67 | 32 | 0 | 85 | 151 | 223 | 289 | 1.35e-14 | 70.9 |
MS.gene014171.t1 | AT1G26260 | 52.239 | 67 | 32 | 0 | 85 | 151 | 223 | 289 | 1.35e-14 | 70.9 |
MS.gene014171.t1 | AT1G26260 | 52.239 | 67 | 32 | 0 | 85 | 151 | 223 | 289 | 1.35e-14 | 70.9 |
MS.gene014171.t1 | AT1G26260 | 52.239 | 67 | 32 | 0 | 85 | 151 | 201 | 267 | 1.37e-14 | 70.9 |
MS.gene014171.t1 | AT1G25330 | 41.837 | 98 | 50 | 3 | 85 | 177 | 104 | 199 | 1.59e-14 | 69.3 |
MS.gene014171.t1 | AT1G26260 | 52.239 | 67 | 32 | 0 | 85 | 151 | 172 | 238 | 1.67e-14 | 70.5 |
MS.gene014171.t1 | AT5G48560 | 49.254 | 67 | 34 | 0 | 85 | 151 | 301 | 367 | 5.80e-14 | 69.3 |
MS.gene014171.t1 | AT5G48560 | 49.254 | 67 | 34 | 0 | 85 | 151 | 301 | 367 | 5.94e-14 | 69.3 |
MS.gene014171.t1 | AT3G23690 | 45.946 | 74 | 40 | 0 | 85 | 158 | 191 | 264 | 6.99e-14 | 68.9 |
MS.gene014171.t1 | AT4G36540 | 36.111 | 108 | 63 | 2 | 75 | 178 | 133 | 238 | 9.10e-14 | 68.2 |
MS.gene014171.t1 | AT4G36540 | 35.455 | 110 | 63 | 2 | 75 | 178 | 133 | 240 | 9.79e-14 | 68.2 |
MS.gene014171.t1 | AT1G18400 | 47.761 | 67 | 35 | 0 | 85 | 151 | 145 | 211 | 4.18e-13 | 65.5 |
MS.gene014171.t1 | AT1G18400 | 47.761 | 67 | 35 | 0 | 85 | 151 | 145 | 211 | 5.91e-13 | 65.5 |
MS.gene014171.t1 | AT1G59640 | 44.595 | 74 | 41 | 0 | 85 | 158 | 136 | 209 | 6.02e-13 | 65.5 |
MS.gene014171.t1 | AT3G57800 | 43.243 | 74 | 42 | 0 | 85 | 158 | 204 | 277 | 6.33e-13 | 66.2 |
MS.gene014171.t1 | AT2G42300 | 43.243 | 74 | 42 | 0 | 85 | 158 | 185 | 258 | 8.01e-13 | 65.5 |
MS.gene014171.t1 | AT2G42300 | 43.243 | 74 | 42 | 0 | 85 | 158 | 185 | 258 | 8.60e-13 | 65.1 |
MS.gene014171.t1 | AT5G62610 | 36.957 | 92 | 57 | 1 | 85 | 176 | 153 | 243 | 9.75e-13 | 65.1 |
MS.gene014171.t1 | AT5G62610 | 36.957 | 92 | 57 | 1 | 85 | 176 | 153 | 243 | 9.75e-13 | 65.1 |
MS.gene014171.t1 | AT2G18300 | 46.377 | 69 | 37 | 0 | 85 | 153 | 185 | 253 | 9.97e-13 | 65.5 |
MS.gene014171.t1 | AT2G18300 | 46.377 | 69 | 37 | 0 | 85 | 153 | 185 | 253 | 1.04e-12 | 65.5 |
MS.gene014171.t1 | AT2G18300 | 46.377 | 69 | 37 | 0 | 85 | 153 | 185 | 253 | 1.13e-12 | 65.5 |
MS.gene014171.t1 | AT1G73830 | 44.776 | 67 | 37 | 0 | 85 | 151 | 147 | 213 | 1.32e-12 | 64.3 |
MS.gene014171.t1 | AT1G73830 | 44.776 | 67 | 37 | 0 | 85 | 151 | 147 | 213 | 1.37e-12 | 64.3 |
MS.gene014171.t1 | AT1G59640 | 47.761 | 67 | 35 | 0 | 85 | 151 | 136 | 202 | 1.52e-12 | 65.1 |
MS.gene014171.t1 | AT2G42280 | 56.452 | 62 | 24 | 1 | 44 | 102 | 235 | 296 | 6.42e-12 | 62.8 |
MS.gene014171.t1 | AT4G33880 | 53.846 | 65 | 29 | 1 | 86 | 150 | 267 | 330 | 9.76e-12 | 62.8 |
MS.gene014171.t1 | AT2G14760 | 53.846 | 65 | 29 | 1 | 86 | 150 | 238 | 301 | 9.78e-12 | 62.4 |
MS.gene014171.t1 | AT1G27740 | 47.887 | 71 | 36 | 1 | 80 | 150 | 162 | 231 | 3.23e-11 | 60.5 |
Find 29 sgRNAs with CRISPR-Local
Find 48 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCCTTTCGGCAAGGCTTCT+AGG | 0.305032 | 7.2:+16347475 | None:intergenic |
CCGAGTTCTTCTTACCCTTT+CGG | 0.326997 | 7.2:+16347462 | None:intergenic |
ATGCTGCTCGGAACAGAATC+TGG | 0.330247 | 7.2:+16347526 | None:intergenic |
AATGTTTATTGTGGAGAATT+TGG | 0.338878 | 7.2:-16347557 | MS.gene014171:CDS |
AATGAGGATGCTCAATATTA+TGG | 0.342968 | 7.2:-16347770 | MS.gene014171:CDS |
ATTCTGACCTTATCAATGTT+TGG | 0.345820 | 7.2:+16347403 | None:intergenic |
TCCTAGAAGCCTTGCCGAAA+GGG | 0.399735 | 7.2:-16347476 | MS.gene014171:CDS |
CTCTTTGCTCTGATGCTGCT+CGG | 0.438402 | 7.2:+16347514 | None:intergenic |
TCGGAACAGAATCTGGAAAC+TGG | 0.461159 | 7.2:+16347533 | None:intergenic |
CATTTATGATTCTAATGACC+AGG | 0.461256 | 7.2:-16347738 | MS.gene014171:intron |
GGTTGTTCCAAACATTGATA+AGG | 0.462084 | 7.2:-16347410 | MS.gene014171:intron |
CAAAAGAAACTTAAACAACT+TGG | 0.475468 | 7.2:+16347063 | None:intergenic |
CACATCAGAAATGTTAGACT+TGG | 0.499859 | 7.2:-16347284 | MS.gene014171:CDS |
ATCATCAGAAATGTTTATTG+TGG | 0.507405 | 7.2:-16347566 | MS.gene014171:CDS |
TTGATGTTACTCAGAACGTA+GGG | 0.512000 | 7.2:-16347639 | MS.gene014171:intron |
ATCCTAGAAGCCTTGCCGAA+AGG | 0.543719 | 7.2:-16347477 | MS.gene014171:CDS |
AACTCTAAAACGAGGAGTGA+TGG | 0.547308 | 7.2:-16347836 | MS.gene014171:CDS |
TTCTTCTTACCCTTTCGGCA+AGG | 0.550067 | 7.2:+16347467 | None:intergenic |
CCGAAAGGGTAAGAAGAACT+CGG | 0.565752 | 7.2:-16347462 | MS.gene014171:CDS |
CTCCTTGTCTTCGATCATCA+CGG | 0.577461 | 7.2:+16347798 | None:intergenic |
AAAACGAGGAGTGATGGCAT+TGG | 0.578334 | 7.2:-16347830 | MS.gene014171:CDS |
TTTGATGTTACTCAGAACGT+AGG | 0.607876 | 7.2:-16347640 | MS.gene014171:intron |
AGCAGCATCAGAGCAAAGAG+AGG | 0.624459 | 7.2:-16347511 | MS.gene014171:CDS |
ACGAATGAGAAAATTGCAAG+AGG | 0.630200 | 7.2:-16347431 | MS.gene014171:CDS |
AGCCGTGATGATCGAAGACA+AGG | 0.662100 | 7.2:-16347800 | MS.gene014171:CDS |
CGTGATGATCGAAGACAAGG+AGG | 0.691311 | 7.2:-16347797 | MS.gene014171:CDS |
TGATGTTACTCAGAACGTAG+GGG | 0.704763 | 7.2:-16347638 | MS.gene014171:intron |
AAGACAAGGAGGTAGCAATG+AGG | 0.720936 | 7.2:-16347786 | MS.gene014171:CDS |
TATCACATAACTCTAAAACG+AGG | 0.781502 | 7.2:-16347844 | MS.gene014171:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAACATAATTGTCTTAAA+AGG | + | chr7.2:16347535-16347554 | None:intergenic | 15.0% |
!! | AAAACATAATTGTCTTAAAA+GGG | + | chr7.2:16347534-16347553 | None:intergenic | 15.0% |
!! | ATTAAAATATATATTAGTGC+AGG | + | chr7.2:16347740-16347759 | None:intergenic | 15.0% |
!!! | AGTTAAACATTGTTTAATTT+TGG | - | chr7.2:16347565-16347584 | MS.gene014171:CDS | 15.0% |
!! | AAACATAATTGTCTTAAAAG+GGG | + | chr7.2:16347533-16347552 | None:intergenic | 20.0% |
!! | AGATCTTCAAAAACAATTAA+AGG | - | chr7.2:16347638-16347657 | MS.gene014171:intron | 20.0% |
! | AACATAATTGTCTTAAAAGG+GGG | + | chr7.2:16347532-16347551 | None:intergenic | 25.0% |
! | AATGTTTATTGTGGAGAATT+TGG | - | chr7.2:16347326-16347345 | MS.gene014171:intron | 25.0% |
! | ATCATCAGAAATGTTTATTG+TGG | - | chr7.2:16347317-16347336 | MS.gene014171:intron | 25.0% |
! | CAAAAGAAACTTAAACAACT+TGG | + | chr7.2:16347823-16347842 | None:intergenic | 25.0% |
!! | AACATTTCTGATGATTTTCT+TGG | + | chr7.2:16347312-16347331 | None:intergenic | 25.0% |
!! | TTCTTTTGTACAGGTAATAA+AGG | - | chr7.2:16347835-16347854 | MS.gene014171:CDS | 25.0% |
!!! | TGTTTAAGTTTCTTTTGTAC+AGG | - | chr7.2:16347826-16347845 | MS.gene014171:CDS | 25.0% |
AAGTTAACCTGTTATATACC+TGG | + | chr7.2:16347166-16347185 | None:intergenic | 30.0% | |
AATGAGGATGCTCAATATTA+TGG | - | chr7.2:16347113-16347132 | MS.gene014171:CDS | 30.0% | |
AATTGCGAATCAGCAAAATT+AGG | + | chr7.2:16347224-16347243 | None:intergenic | 30.0% | |
ACTAATCATGATTAACTGCA+TGG | + | chr7.2:16347712-16347731 | None:intergenic | 30.0% | |
ATTCTGACCTTATCAATGTT+TGG | + | chr7.2:16347483-16347502 | None:intergenic | 30.0% | |
CATTTATGATTCTAATGACC+AGG | - | chr7.2:16347145-16347164 | MS.gene014171:intron | 30.0% | |
TAACTGCATGGAAATGAATA+GGG | + | chr7.2:16347700-16347719 | None:intergenic | 30.0% | |
TAGGAGACAAAATTGCATTT+AGG | + | chr7.2:16347205-16347224 | None:intergenic | 30.0% | |
TTAACTGCATGGAAATGAAT+AGG | + | chr7.2:16347701-16347720 | None:intergenic | 30.0% | |
!! | TATCACATAACTCTAAAACG+AGG | - | chr7.2:16347039-16347058 | MS.gene014171:CDS | 30.0% |
AACTGCATGGAAATGAATAG+GGG | + | chr7.2:16347699-16347718 | None:intergenic | 35.0% | |
ACGAATGAGAAAATTGCAAG+AGG | - | chr7.2:16347452-16347471 | MS.gene014171:CDS | 35.0% | |
CACATCAGAAATGTTAGACT+TGG | - | chr7.2:16347599-16347618 | MS.gene014171:CDS | 35.0% | |
CTAATGACCAGGTATATAAC+AGG | - | chr7.2:16347156-16347175 | MS.gene014171:intron | 35.0% | |
GGTTGTTCCAAACATTGATA+AGG | - | chr7.2:16347473-16347492 | MS.gene014171:CDS | 35.0% | |
TTGATGTTACTCAGAACGTA+GGG | - | chr7.2:16347244-16347263 | MS.gene014171:intron | 35.0% | |
TTTGATGTTACTCAGAACGT+AGG | - | chr7.2:16347243-16347262 | MS.gene014171:intron | 35.0% | |
TGATGTTACTCAGAACGTAG+GGG | - | chr7.2:16347245-16347264 | MS.gene014171:intron | 40.0% | |
!! | AACTCTAAAACGAGGAGTGA+TGG | - | chr7.2:16347047-16347066 | MS.gene014171:CDS | 40.0% |
AAAACGAGGAGTGATGGCAT+TGG | - | chr7.2:16347053-16347072 | MS.gene014171:CDS | 45.0% | |
AAGACAAGGAGGTAGCAATG+AGG | - | chr7.2:16347097-16347116 | MS.gene014171:CDS | 45.0% | |
CCGAAAGGGTAAGAAGAACT+CGG | - | chr7.2:16347421-16347440 | MS.gene014171:CDS | 45.0% | |
CCGAGTTCTTCTTACCCTTT+CGG | + | chr7.2:16347424-16347443 | None:intergenic | 45.0% | |
CTCCTTGTCTTCGATCATCA+CGG | + | chr7.2:16347088-16347107 | None:intergenic | 45.0% | |
TCGGAACAGAATCTGGAAAC+TGG | + | chr7.2:16347353-16347372 | None:intergenic | 45.0% | |
TTCTTCTTACCCTTTCGGCA+AGG | + | chr7.2:16347419-16347438 | None:intergenic | 45.0% | |
!!! | TTAACTTTTTTTTTTTTATT+AGG | - | chr7.2:16347179-16347198 | MS.gene014171:intron | 5.0% |
AGCAGCATCAGAGCAAAGAG+AGG | - | chr7.2:16347372-16347391 | MS.gene014171:intron | 50.0% | |
AGCCGTGATGATCGAAGACA+AGG | - | chr7.2:16347083-16347102 | MS.gene014171:CDS | 50.0% | |
ATCCTAGAAGCCTTGCCGAA+AGG | - | chr7.2:16347406-16347425 | MS.gene014171:intron | 50.0% | |
ATGCTGCTCGGAACAGAATC+TGG | + | chr7.2:16347360-16347379 | None:intergenic | 50.0% | |
CGTGATGATCGAAGACAAGG+AGG | - | chr7.2:16347086-16347105 | MS.gene014171:CDS | 50.0% | |
CTCTTTGCTCTGATGCTGCT+CGG | + | chr7.2:16347372-16347391 | None:intergenic | 50.0% | |
TCCTAGAAGCCTTGCCGAAA+GGG | - | chr7.2:16347407-16347426 | MS.gene014171:intron | 50.0% | |
ACCCTTTCGGCAAGGCTTCT+AGG | + | chr7.2:16347411-16347430 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 16347035 | 16347870 | 16347035 | ID=MS.gene014171 |
chr7.2 | mRNA | 16347035 | 16347870 | 16347035 | ID=MS.gene014171.t1;Parent=MS.gene014171 |
chr7.2 | exon | 16347739 | 16347870 | 16347739 | ID=MS.gene014171.t1.exon1;Parent=MS.gene014171.t1 |
chr7.2 | CDS | 16347739 | 16347870 | 16347739 | ID=cds.MS.gene014171.t1;Parent=MS.gene014171.t1 |
chr7.2 | exon | 16347411 | 16347647 | 16347411 | ID=MS.gene014171.t1.exon2;Parent=MS.gene014171.t1 |
chr7.2 | CDS | 16347411 | 16347647 | 16347411 | ID=cds.MS.gene014171.t1;Parent=MS.gene014171.t1 |
chr7.2 | exon | 16347246 | 16347314 | 16347246 | ID=MS.gene014171.t1.exon3;Parent=MS.gene014171.t1 |
chr7.2 | CDS | 16347246 | 16347314 | 16347246 | ID=cds.MS.gene014171.t1;Parent=MS.gene014171.t1 |
chr7.2 | exon | 16347035 | 16347133 | 16347035 | ID=MS.gene014171.t1.exon4;Parent=MS.gene014171.t1 |
chr7.2 | CDS | 16347035 | 16347133 | 16347035 | ID=cds.MS.gene014171.t1;Parent=MS.gene014171.t1 |
Gene Sequence |
Protein sequence |