Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014214.t1 | XP_003603927.1 | 81.6 | 457 | 63 | 8 | 1 | 456 | 1 | 437 | 9.50E-196 | 693 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014214.t1 | P70371 | 34.5 | 139 | 74 | 5 | 330 | 452 | 279 | 416 | 4.9e-07 | 57.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014214.t1 | G7J729 | 81.6 | 457 | 63 | 8 | 1 | 456 | 1 | 437 | 6.9e-196 | 693.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014214.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014214.t1 | MTR_3g116690 | 81.619 | 457 | 63 | 8 | 1 | 456 | 1 | 437 | 0.0 | 681 |
| MS.gene014214.t1 | MTR_3g117790 | 81.619 | 457 | 63 | 8 | 1 | 456 | 1 | 437 | 0.0 | 673 |
| MS.gene014214.t1 | MTR_3g117790 | 79.650 | 457 | 63 | 9 | 1 | 456 | 1 | 428 | 0.0 | 646 |
| MS.gene014214.t1 | MTR_3g014420 | 79.032 | 124 | 21 | 2 | 194 | 317 | 17 | 135 | 9.04e-59 | 189 |
| MS.gene014214.t1 | MTR_3g467090 | 32.443 | 262 | 120 | 5 | 220 | 452 | 387 | 620 | 2.62e-30 | 124 |
| MS.gene014214.t1 | MTR_3g467090 | 34.135 | 208 | 108 | 9 | 6 | 209 | 8 | 190 | 2.07e-17 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014214.t1 | AT5G58340 | 25.984 | 381 | 247 | 13 | 89 | 450 | 81 | 445 | 3.11e-14 | 75.1 |
| MS.gene014214.t1 | AT5G58340 | 25.984 | 381 | 247 | 13 | 89 | 450 | 81 | 445 | 3.11e-14 | 75.1 |
| MS.gene014214.t1 | AT1G15720 | 28.455 | 369 | 194 | 16 | 89 | 450 | 81 | 386 | 1.58e-12 | 69.3 |
Find 110 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCATCATTGTTAACATTT+AGG | 0.186976 | 3.4:-100015897 | None:intergenic |
| AAAGAAATAACCAACCATTA+TGG | 0.218651 | 3.4:-100015125 | None:intergenic |
| CTGCTTGGAGGTAGTGTTTA+GGG | 0.228026 | 3.4:-100014843 | None:intergenic |
| CTCTTGAATGGCTTTCCTTC+TGG | 0.254243 | 3.4:-100015010 | None:intergenic |
| TCCAAGCAGTTGACAGAATA+TGG | 0.254939 | 3.4:+100014857 | MS.gene014214:CDS |
| TAAGTGAATCCCCGTTCTTT+TGG | 0.273307 | 3.4:-100015711 | None:intergenic |
| TAACTCCAAAATTGAGATTC+TGG | 0.273343 | 3.4:+100014920 | MS.gene014214:CDS |
| GTCTGGCATACAAATAGAAT+TGG | 0.288931 | 3.4:-100015779 | None:intergenic |
| TGAGTACGAGCAGAACTATT+TGG | 0.294065 | 3.4:-100015979 | None:intergenic |
| AAAGACAATGGAAGGCTTAA+AGG | 0.299896 | 3.4:+100015601 | MS.gene014214:CDS |
| GCATCGCTAATAGGAGGATT+AGG | 0.304698 | 3.4:-100014739 | None:intergenic |
| ACTGCTTGGAGGTAGTGTTT+AGG | 0.310482 | 3.4:-100014844 | None:intergenic |
| TATAGAGAGTGAGCATATTA+AGG | 0.313329 | 3.4:+100014540 | MS.gene014214:CDS |
| TCAGAATTGGAGAAGGAAAC+TGG | 0.354877 | 3.4:+100016975 | MS.gene014214:intron |
| AAGAAATAACCAACCATTAT+GGG | 0.366017 | 3.4:-100015124 | None:intergenic |
| CATCTTCCGATTATCGATTT+CGG | 0.378562 | 3.4:-100014590 | None:intergenic |
| GATGATGAACATCACTTTGA+TGG | 0.379549 | 3.4:-100015942 | None:intergenic |
| GATTTCATGGCATCGCTAAT+AGG | 0.386966 | 3.4:-100014748 | None:intergenic |
| CCATTCATCGATAGATGCTT+TGG | 0.387362 | 3.4:-100014653 | None:intergenic |
| GGAGGATTAGGGTTTGAAGA+AGG | 0.390213 | 3.4:-100014727 | None:intergenic |
| GTAGACATAAGCAGATTTCA+TGG | 0.396640 | 3.4:-100014761 | None:intergenic |
| GGAAAGGTTAGGGTGGTGTT+TGG | 0.397081 | 3.4:+100014489 | MS.gene014214:CDS |
| CATCGCTAATAGGAGGATTA+GGG | 0.397652 | 3.4:-100014738 | None:intergenic |
| TGTTGTTGTTGTTGAGGTAA+TGG | 0.400125 | 3.4:+100015639 | MS.gene014214:CDS |
| TTTGTATGCCAGACATTGTA+AGG | 0.401380 | 3.4:+100015788 | MS.gene014214:CDS |
| GAAGAAGCTTTCTCCGTTGA+AGG | 0.405658 | 3.4:+100016520 | MS.gene014214:CDS |
| CACCTGCACCTGCTGCTTCA+AGG | 0.406135 | 3.4:-100014810 | None:intergenic |
| GGAAGTTGCCTTCGTAAGAT+TGG | 0.411891 | 3.4:-100015920 | None:intergenic |
| TGGTGTTTGGAATTCGTTCT+TGG | 0.411975 | 3.4:+100014502 | MS.gene014214:CDS |
| GCTCAAAATCAATCCCATAA+TGG | 0.413594 | 3.4:+100015111 | MS.gene014214:CDS |
| TTAACGAGGCCCAAAAGAAC+GGG | 0.420375 | 3.4:+100015701 | MS.gene014214:CDS |
| TCCATATTCTGTCAACTGCT+TGG | 0.421745 | 3.4:-100014858 | None:intergenic |
| TTTAGGCAAGCATGTGGGTT+GGG | 0.424815 | 3.4:-100015880 | None:intergenic |
| AAAACTACTTCTAATTGATT+GGG | 0.433610 | 3.4:+100014702 | MS.gene014214:CDS |
| GCATGTATCGTGAGTTGAAA+AGG | 0.433870 | 3.4:-100014963 | None:intergenic |
| GCAAATAACTTCTTCCCTCC+AGG | 0.443932 | 3.4:-100014897 | None:intergenic |
| TGGACAACAACTCATCTTCA+AGG | 0.456297 | 3.4:-100014633 | None:intergenic |
| AATGGGAAGAGGATAATCTA+AGG | 0.459156 | 3.4:+100016594 | MS.gene014214:CDS |
| GGAGAAAGCTTCTTCCTCTC+TGG | 0.461592 | 3.4:-100016512 | None:intergenic |
| CACAAATCAGGAGCCACAAA+TGG | 0.462731 | 3.4:+100015831 | MS.gene014214:CDS |
| TACTACTGTTGTTGTTGTTG+AGG | 0.467147 | 3.4:+100015633 | MS.gene014214:CDS |
| TGGAGAAATTTGAAGCGGTC+TGG | 0.467731 | 3.4:+100017133 | MS.gene014214:CDS |
| ATTTGAAAATGGAAAGGTTA+GGG | 0.470688 | 3.4:+100014479 | None:intergenic |
| ACATCAGACCTTACAATGTC+TGG | 0.471043 | 3.4:-100015796 | None:intergenic |
| GTACATTTGCATCTTTACTC+TGG | 0.471288 | 3.4:-100015858 | None:intergenic |
| TGATTCGATCGATGGATTGC+AGG | 0.471350 | 3.4:+100016448 | MS.gene014214:CDS |
| AATTTGAAAATGGAAAGGTT+AGG | 0.473595 | 3.4:+100014478 | None:intergenic |
| GAAGATGAAAATGCTTCTGT+TGG | 0.479184 | 3.4:+100014606 | MS.gene014214:CDS |
| TACCTTGAAGCAGCAGGTGC+AGG | 0.480680 | 3.4:+100014808 | MS.gene014214:CDS |
| GCAACAGAGTGAAGAAAGGA+AGG | 0.481758 | 3.4:-100015075 | None:intergenic |
| GGCAATTGAAGACACAAATC+AGG | 0.483604 | 3.4:+100015819 | MS.gene014214:CDS |
| CAGTCACCGAAATCGATAAT+CGG | 0.485524 | 3.4:+100014584 | MS.gene014214:CDS |
| GATGCTCGGAATAACCTTGT+AGG | 0.496320 | 3.4:+100015051 | MS.gene014214:CDS |
| TCTGGCATACAAATAGAATT+GGG | 0.497185 | 3.4:-100015778 | None:intergenic |
| ATATTCTGTCAACTGCTTGG+AGG | 0.502799 | 3.4:-100014855 | None:intergenic |
| CTATTTGGTTTCATCAAGCT+AGG | 0.506498 | 3.4:-100015964 | None:intergenic |
| AAGTACATACAGTTTAATTC+CGG | 0.506549 | 3.4:-100016618 | None:intergenic |
| ATGAAAATGCTTCTGTTGGA+AGG | 0.511456 | 3.4:+100014610 | MS.gene014214:CDS |
| CCAAAGCATCTATCGATGAA+TGG | 0.516478 | 3.4:+100014653 | MS.gene014214:CDS |
| TGAAAAGGGAAGCATCGATT+CGG | 0.518415 | 3.4:-100014948 | None:intergenic |
| TTGTCTTTGTCGAGTTCCAT+CGG | 0.525502 | 3.4:-100015586 | None:intergenic |
| GAGGATTAGGGTTTGAAGAA+GGG | 0.529616 | 3.4:-100014726 | None:intergenic |
| AGCAGCAACAGAGTGAAGAA+AGG | 0.532298 | 3.4:-100015079 | None:intergenic |
| CATGTATCGTGAGTTGAAAA+GGG | 0.536326 | 3.4:-100014962 | None:intergenic |
| TAGTGGGATGATTCGATCGA+TGG | 0.537188 | 3.4:+100016440 | MS.gene014214:intron |
| GATTGCAGGCAGGAACATCA+AGG | 0.543132 | 3.4:+100016462 | MS.gene014214:CDS |
| TTCACTTAAATGCAATTCTG+TGG | 0.545122 | 3.4:+100015726 | MS.gene014214:CDS |
| TCGATCGATGGATTGCAGGC+AGG | 0.547141 | 3.4:+100016452 | MS.gene014214:CDS |
| TTTGGTTCATACTCCTTCAA+CGG | 0.551515 | 3.4:-100016533 | None:intergenic |
| AAAATGGAGTCAATGGGAAG+AGG | 0.556320 | 3.4:+100016583 | MS.gene014214:CDS |
| ATTTAGGCAAGCATGTGGGT+TGG | 0.556821 | 3.4:-100015881 | None:intergenic |
| AAAGGAATTTGAAAATGGAA+AGG | 0.559315 | 3.4:+100014473 | None:intergenic |
| GAACCGTAGGTTTCAAAACC+TGG | 0.560313 | 3.4:+100014879 | MS.gene014214:CDS |
| ATGATGAACATCACTTTGAT+GGG | 0.562151 | 3.4:-100015941 | None:intergenic |
| GAAGAGGATAATCTAAGGAC+CGG | 0.564580 | 3.4:+100016599 | MS.gene014214:CDS |
| GTTAACGAGGCCCAAAAGAA+CGG | 0.567267 | 3.4:+100015700 | MS.gene014214:CDS |
| GAAGAAAGGAAGGGCCTACA+AGG | 0.570430 | 3.4:-100015065 | None:intergenic |
| CTTCATTGTCTGATACCAGA+AGG | 0.585689 | 3.4:+100014995 | MS.gene014214:CDS |
| AACTCGACAAAGACAATGGA+AGG | 0.587275 | 3.4:+100015593 | MS.gene014214:CDS |
| CAATGGAAGGCTTAAAGGCA+AGG | 0.588132 | 3.4:+100015606 | MS.gene014214:CDS |
| TTGCTGTGGAATGTACCGTT+AGG | 0.589094 | 3.4:+100014785 | MS.gene014214:CDS |
| TTCATGGCATCGCTAATAGG+AGG | 0.591616 | 3.4:-100014745 | None:intergenic |
| AGGTTGATTTGAAAGACAAG+TGG | 0.593616 | 3.4:+100017113 | MS.gene014214:intron |
| TTGACAGAATATGGAACCGT+AGG | 0.599653 | 3.4:+100014866 | MS.gene014214:CDS |
| TGACTCTTTGCCAGTTAACG+AGG | 0.601690 | 3.4:+100015687 | MS.gene014214:CDS |
| TGCTTATGTCTACATTGCTG+TGG | 0.602167 | 3.4:+100014771 | MS.gene014214:CDS |
| TTAACATTTAGGCAAGCATG+TGG | 0.604145 | 3.4:-100015886 | None:intergenic |
| CTTGAAGCAGCAGGTGCAGG+TGG | 0.604795 | 3.4:+100014811 | MS.gene014214:CDS |
| TCTCATATTAGAGTCTCCGA+TGG | 0.606409 | 3.4:+100015570 | MS.gene014214:intron |
| ATTGCAGGCAGGAACATCAA+GGG | 0.616311 | 3.4:+100016463 | MS.gene014214:CDS |
| GTTAGGTACCTTGAAGCAGC+AGG | 0.617125 | 3.4:+100014802 | MS.gene014214:CDS |
| ATTATCGATTTCGGTGACTG+AGG | 0.617150 | 3.4:-100014581 | None:intergenic |
| ATGGAACTCGACAAAGACAA+TGG | 0.617169 | 3.4:+100015589 | MS.gene014214:CDS |
| TGAAAATGGAAAGGTTAGGG+TGG | 0.628807 | 3.4:+100014482 | None:intergenic |
| CCTAAATGTTAACAATGATG+AGG | 0.630277 | 3.4:+100015897 | MS.gene014214:CDS |
| TGCTGCTTCAAGGTACCTAA+CGG | 0.634086 | 3.4:-100014800 | None:intergenic |
| ATACAAATAGAATTGGGCAC+AGG | 0.635848 | 3.4:-100015772 | None:intergenic |
| ATGGATGCTTGAACTTCTCG+AGG | 0.640307 | 3.4:+100014672 | MS.gene014214:CDS |
| TTGCAGGCAGGAACATCAAG+GGG | 0.642905 | 3.4:+100016464 | MS.gene014214:CDS |
| TTCGTTTGCGTAGTCCAGAG+AGG | 0.651598 | 3.4:+100016498 | MS.gene014214:CDS |
| CAACAGAGTGAAGAAAGGAA+GGG | 0.656227 | 3.4:-100015074 | None:intergenic |
| CGTAGGTTTCAAAACCTGGA+GGG | 0.661614 | 3.4:+100014883 | MS.gene014214:CDS |
| CAGAAGGAAAGCCATTCAAG+AGG | 0.668057 | 3.4:+100015011 | MS.gene014214:CDS |
| TAACATTTAGGCAAGCATGT+GGG | 0.675244 | 3.4:-100015885 | None:intergenic |
| ACAAGTGGAGAAATTTGAAG+CGG | 0.678726 | 3.4:+100017128 | MS.gene014214:CDS |
| AGACATTGTAAGGTCTGATG+TGG | 0.687030 | 3.4:+100015798 | MS.gene014214:CDS |
| CCGTAGGTTTCAAAACCTGG+AGG | 0.690526 | 3.4:+100014882 | MS.gene014214:CDS |
| TAGTTCTGCTCGTACTCACG+AGG | 0.692042 | 3.4:+100015984 | MS.gene014214:CDS |
| TGATGAGGCCAATCTTACGA+AGG | 0.699645 | 3.4:+100015912 | MS.gene014214:CDS |
| TAACGAGGCCCAAAAGAACG+GGG | 0.712659 | 3.4:+100015702 | MS.gene014214:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTTGAATAGTAAAA+TGG | - | chr3.4:100016852-100016871 | None:intergenic | 10.0% |
| !! | AAATATTATAGTAACTTGAT+TGG | - | chr3.4:100016651-100016670 | None:intergenic | 15.0% |
| !! | TAAAATAAGCAATAAAATCA+AGG | - | chr3.4:100016418-100016437 | None:intergenic | 15.0% |
| !!! | TTTGTAATTTTTTGTATTTC+TGG | + | chr3.4:100016016-100016035 | MS.gene014214:intron | 15.0% |
| !! | AAAAACTACTTCTAATTGAT+TGG | + | chr3.4:100014701-100014720 | MS.gene014214:CDS | 20.0% |
| !! | AAAAATGTATGACAAAGTAA+AGG | - | chr3.4:100016741-100016760 | None:intergenic | 20.0% |
| !! | AAAACTACTTCTAATTGATT+GGG | + | chr3.4:100014702-100014721 | MS.gene014214:CDS | 20.0% |
| !! | AAAGGAGAAAGAAAAAAAAA+TGG | + | chr3.4:100016567-100016586 | MS.gene014214:CDS | 20.0% |
| !! | AACCAAAAAATATTACGAAA+AGG | + | chr3.4:100016549-100016568 | MS.gene014214:CDS | 20.0% |
| !! | AATTGAAGCATAAATAGTTA+GGG | - | chr3.4:100016877-100016896 | None:intergenic | 20.0% |
| !!! | ATACAATGTTTTTTCGTTTT+TGG | + | chr3.4:100016688-100016707 | MS.gene014214:intron | 20.0% |
| !!! | CTTTTTTCTTTTTTCAGAAT+TGG | + | chr3.4:100016962-100016981 | MS.gene014214:intron | 20.0% |
| !!! | TATTGCTTATTTTATGTAGT+GGG | + | chr3.4:100016424-100016443 | MS.gene014214:intron | 20.0% |
| !!! | TGAATCAAATTTTGTTTATC+AGG | + | chr3.4:100017093-100017112 | MS.gene014214:intron | 20.0% |
| !!! | TTATTGCTTATTTTATGTAG+TGG | + | chr3.4:100016423-100016442 | MS.gene014214:intron | 20.0% |
| !!! | TTTTTAGAGTAAAAAGGAAT+GGG | - | chr3.4:100016330-100016349 | None:intergenic | 20.0% |
| ! | AAACAACAACAACAGAAAAA+AGG | - | chr3.4:100015154-100015173 | None:intergenic | 25.0% |
| ! | AAAGAAATAACCAACCATTA+TGG | - | chr3.4:100015128-100015147 | None:intergenic | 25.0% |
| ! | AAAGTAAAGGTAAAAGCAAA+AGG | - | chr3.4:100016728-100016747 | None:intergenic | 25.0% |
| ! | AACAACAACAACAGAAAAAA+GGG | - | chr3.4:100015153-100015172 | None:intergenic | 25.0% |
| ! | AAGAAATAACCAACCATTAT+GGG | - | chr3.4:100015127-100015146 | None:intergenic | 25.0% |
| ! | AAGTACATACAGTTTAATTC+CGG | - | chr3.4:100016621-100016640 | None:intergenic | 25.0% |
| ! | AATTTCATTGCAAAATGCAT+AGG | + | chr3.4:100015402-100015421 | MS.gene014214:intron | 25.0% |
| ! | AGAAAAAAAAATGGAGTCAA+TGG | + | chr3.4:100016576-100016595 | MS.gene014214:CDS | 25.0% |
| ! | AGAACAAAAAATTACAAGCA+TGG | - | chr3.4:100016388-100016407 | None:intergenic | 25.0% |
| ! | ATTTCATTGCAAAATGCATA+GGG | + | chr3.4:100015403-100015422 | MS.gene014214:intron | 25.0% |
| ! | CAATTGAAGCATAAATAGTT+AGG | - | chr3.4:100016878-100016897 | None:intergenic | 25.0% |
| ! | GAAAAAAAAATGGAGTCAAT+GGG | + | chr3.4:100016577-100016596 | MS.gene014214:CDS | 25.0% |
| ! | TTGCAATTTATCTGCATTTA+GGG | - | chr3.4:100016106-100016125 | None:intergenic | 25.0% |
| ! | TTTGCAATTTATCTGCATTT+AGG | - | chr3.4:100016107-100016126 | None:intergenic | 25.0% |
| !! | AACAGGTATTTTTCATAACT+CGG | - | chr3.4:100015511-100015530 | None:intergenic | 25.0% |
| !! | CTCCTTTTCGTAATATTTTT+TGG | - | chr3.4:100016554-100016573 | None:intergenic | 25.0% |
| !!! | AAAAGTTCTAAAAAGCAAAC+AGG | - | chr3.4:100015528-100015547 | None:intergenic | 25.0% |
| !!! | CTAGTGTTTTTAGAGTAAAA+AGG | - | chr3.4:100016336-100016355 | None:intergenic | 25.0% |
| !!! | GTTTTTAGAGTAAAAAGGAA+TGG | - | chr3.4:100016331-100016350 | None:intergenic | 25.0% |
| !!! | TCTGTTGTTGTTGTTTATTA+CGG | + | chr3.4:100015158-100015177 | MS.gene014214:intron | 25.0% |
| AAAAAGTTGAACCTCTTGAA+TGG | - | chr3.4:100015025-100015044 | None:intergenic | 30.0% | |
| AAAATCAATCCCATAATGGT+TGG | + | chr3.4:100015115-100015134 | MS.gene014214:intron | 30.0% | |
| AACTGAAGTAAGTCTAGTAA+AGG | + | chr3.4:100017033-100017052 | MS.gene014214:intron | 30.0% | |
| AAGCAATAAAATCAAGGCAT+CGG | - | chr3.4:100016412-100016431 | None:intergenic | 30.0% | |
| ACAACAACAACAGAAAAAAG+GGG | - | chr3.4:100015152-100015171 | None:intergenic | 30.0% | |
| ACTAACAAAGTCTACATTCA+GGG | - | chr3.4:100016135-100016154 | None:intergenic | 30.0% | |
| ATGATGAACATCACTTTGAT+GGG | - | chr3.4:100015944-100015963 | None:intergenic | 30.0% | |
| CCTAAATGTTAACAATGATG+AGG | + | chr3.4:100015897-100015916 | MS.gene014214:CDS | 30.0% | |
| CCTCATCATTGTTAACATTT+AGG | - | chr3.4:100015900-100015919 | None:intergenic | 30.0% | |
| TAACTCCAAAATTGAGATTC+TGG | + | chr3.4:100014920-100014939 | MS.gene014214:CDS | 30.0% | |
| TATAGAGAGTGAGCATATTA+AGG | + | chr3.4:100014540-100014559 | MS.gene014214:CDS | 30.0% | |
| TCAGGGACTAAATTAACTAA+CGG | - | chr3.4:100016182-100016201 | None:intergenic | 30.0% | |
| TCTGGCATACAAATAGAATT+GGG | - | chr3.4:100015781-100015800 | None:intergenic | 30.0% | |
| TTCACTTAAATGCAATTCTG+TGG | + | chr3.4:100015726-100015745 | MS.gene014214:CDS | 30.0% | |
| TTGCATATTATCTGCATTCA+GGG | + | chr3.4:100016256-100016275 | MS.gene014214:intron | 30.0% | |
| TTTGCATATTATCTGCATTC+AGG | + | chr3.4:100016255-100016274 | MS.gene014214:intron | 30.0% | |
| ! | AGTAAGTCTAGTAAAGGTAT+TGG | + | chr3.4:100017039-100017058 | MS.gene014214:intron | 30.0% |
| ! | CTTTTCCAGAATCTCAATTT+TGG | - | chr3.4:100014928-100014947 | None:intergenic | 30.0% |
| !!! | ATTTCTGGTTGATTCCTTTT+TGG | + | chr3.4:100016031-100016050 | MS.gene014214:intron | 30.0% |
| !!! | TCAAGAGGTTCAACTTTTTT+TGG | + | chr3.4:100015026-100015045 | MS.gene014214:CDS | 30.0% |
| !!! | TCTTTTTTCAGAATTGGAGA+AGG | + | chr3.4:100016968-100016987 | MS.gene014214:intron | 30.0% |
| !!! | TTTCTGGTTGATTCCTTTTT+GGG | + | chr3.4:100016032-100016051 | MS.gene014214:intron | 30.0% |
| AAAGACAATGGAAGGCTTAA+AGG | + | chr3.4:100015601-100015620 | MS.gene014214:CDS | 35.0% | |
| AAGTGACTAATTCCCCAAAA+AGG | - | chr3.4:100016048-100016067 | None:intergenic | 35.0% | |
| AATGGGAAGAGGATAATCTA+AGG | + | chr3.4:100016594-100016613 | MS.gene014214:CDS | 35.0% | |
| ACAAGTGGAGAAATTTGAAG+CGG | + | chr3.4:100017128-100017147 | MS.gene014214:CDS | 35.0% | |
| ACTAACGAAGTCTACATTCA+GGG | - | chr3.4:100016199-100016218 | None:intergenic | 35.0% | |
| ATACAAATAGAATTGGGCAC+AGG | - | chr3.4:100015775-100015794 | None:intergenic | 35.0% | |
| ATGAAAATGCTTCTGTTGGA+AGG | + | chr3.4:100014610-100014629 | MS.gene014214:CDS | 35.0% | |
| ATGAAGCACAAGCACATATA+CGG | - | chr3.4:100015301-100015320 | None:intergenic | 35.0% | |
| CCTAACCAATGAATGATTCA+TGG | - | chr3.4:100015432-100015451 | None:intergenic | 35.0% | |
| GAAGATGAAAATGCTTCTGT+TGG | + | chr3.4:100014606-100014625 | MS.gene014214:CDS | 35.0% | |
| GACTAACAAAGTCTACATTC+AGG | - | chr3.4:100016136-100016155 | None:intergenic | 35.0% | |
| GATGATGAACATCACTTTGA+TGG | - | chr3.4:100015945-100015964 | None:intergenic | 35.0% | |
| GCTCAAAATCAATCCCATAA+TGG | + | chr3.4:100015111-100015130 | MS.gene014214:CDS | 35.0% | |
| GTACATTTGCATCTTTACTC+TGG | - | chr3.4:100015861-100015880 | None:intergenic | 35.0% | |
| GTAGACATAAGCAGATTTCA+TGG | - | chr3.4:100014764-100014783 | None:intergenic | 35.0% | |
| GTCTGGCATACAAATAGAAT+TGG | - | chr3.4:100015782-100015801 | None:intergenic | 35.0% | |
| TAACATTTAGGCAAGCATGT+GGG | - | chr3.4:100015888-100015907 | None:intergenic | 35.0% | |
| TATATGTGCTTGTGCTTCAT+AGG | + | chr3.4:100015301-100015320 | MS.gene014214:intron | 35.0% | |
| TCTCTCTCCCAAAGTATATA+AGG | - | chr3.4:100015383-100015402 | None:intergenic | 35.0% | |
| TTAACATTTAGGCAAGCATG+TGG | - | chr3.4:100015889-100015908 | None:intergenic | 35.0% | |
| TTTGTATGCCAGACATTGTA+AGG | + | chr3.4:100015788-100015807 | MS.gene014214:CDS | 35.0% | |
| ! | AGTGAGAGCCTTATATACTT+TGG | + | chr3.4:100015372-100015391 | MS.gene014214:intron | 35.0% |
| ! | CATGTATCGTGAGTTGAAAA+GGG | - | chr3.4:100014965-100014984 | None:intergenic | 35.0% |
| ! | CCATGAATCATTCATTGGTT+AGG | + | chr3.4:100015429-100015448 | MS.gene014214:intron | 35.0% |
| ! | CTATTTGGTTTCATCAAGCT+AGG | - | chr3.4:100015967-100015986 | None:intergenic | 35.0% |
| ! | GTGAGAGCCTTATATACTTT+GGG | + | chr3.4:100015373-100015392 | MS.gene014214:intron | 35.0% |
| ! | TACTACTGTTGTTGTTGTTG+AGG | + | chr3.4:100015633-100015652 | MS.gene014214:CDS | 35.0% |
| ! | TGTTGTTGTTGTTGAGGTAA+TGG | + | chr3.4:100015639-100015658 | MS.gene014214:CDS | 35.0% |
| ! | TTTGGTTCATACTCCTTCAA+CGG | - | chr3.4:100016536-100016555 | None:intergenic | 35.0% |
| !! | AGGTTGATTTGAAAGACAAG+TGG | + | chr3.4:100017113-100017132 | MS.gene014214:intron | 35.0% |
| !! | CATCTTCCGATTATCGATTT+CGG | - | chr3.4:100014593-100014612 | None:intergenic | 35.0% |
| !! | TTCTGGTTGATTCCTTTTTG+GGG | + | chr3.4:100016033-100016052 | MS.gene014214:intron | 35.0% |
| !!! | AACTTTTTTTGGAGGATGCT+CGG | + | chr3.4:100015037-100015056 | MS.gene014214:CDS | 35.0% |
| !!! | AGAGGTTCAACTTTTTTTGG+AGG | + | chr3.4:100015029-100015048 | MS.gene014214:CDS | 35.0% |
| !!! | TTACTCTGGTTTTCCATTTG+TGG | - | chr3.4:100015847-100015866 | None:intergenic | 35.0% |
| AAAATGGAGTCAATGGGAAG+AGG | + | chr3.4:100016583-100016602 | MS.gene014214:CDS | 40.0% | |
| AACTCGACAAAGACAATGGA+AGG | + | chr3.4:100015593-100015612 | MS.gene014214:CDS | 40.0% | |
| ACATCAGACCTTACAATGTC+TGG | - | chr3.4:100015799-100015818 | None:intergenic | 40.0% | |
| AGACATTGTAAGGTCTGATG+TGG | + | chr3.4:100015798-100015817 | MS.gene014214:CDS | 40.0% | |
| ATATTCTGTCAACTGCTTGG+AGG | - | chr3.4:100014858-100014877 | None:intergenic | 40.0% | |
| ATGGAACTCGACAAAGACAA+TGG | + | chr3.4:100015589-100015608 | MS.gene014214:CDS | 40.0% | |
| CAACAGAGTGAAGAAAGGAA+GGG | - | chr3.4:100015077-100015096 | None:intergenic | 40.0% | |
| CAGTCACCGAAATCGATAAT+CGG | + | chr3.4:100014584-100014603 | MS.gene014214:CDS | 40.0% | |
| CATCGCTAATAGGAGGATTA+GGG | - | chr3.4:100014741-100014760 | None:intergenic | 40.0% | |
| CCATTCATCGATAGATGCTT+TGG | - | chr3.4:100014656-100014675 | None:intergenic | 40.0% | |
| CTTCATTGTCTGATACCAGA+AGG | + | chr3.4:100014995-100015014 | MS.gene014214:CDS | 40.0% | |
| GAAGAGGATAATCTAAGGAC+CGG | + | chr3.4:100016599-100016618 | MS.gene014214:CDS | 40.0% | |
| GACTAACGAAGTCTACATTC+AGG | - | chr3.4:100016200-100016219 | None:intergenic | 40.0% | |
| GAGGATTAGGGTTTGAAGAA+GGG | - | chr3.4:100014729-100014748 | None:intergenic | 40.0% | |
| GATTTCATGGCATCGCTAAT+AGG | - | chr3.4:100014751-100014770 | None:intergenic | 40.0% | |
| GGCAATTGAAGACACAAATC+AGG | + | chr3.4:100015819-100015838 | MS.gene014214:CDS | 40.0% | |
| GGTAAAAGCAAAAGGAGATG+AGG | - | chr3.4:100016720-100016739 | None:intergenic | 40.0% | |
| GGTCTCCATGAATCATTCAT+TGG | + | chr3.4:100015424-100015443 | MS.gene014214:intron | 40.0% | |
| GTGTCAAGTCAACATTGTGT+CGG | - | chr3.4:100015237-100015256 | None:intergenic | 40.0% | |
| TCAGAATTGGAGAAGGAAAC+TGG | + | chr3.4:100016975-100016994 | MS.gene014214:intron | 40.0% | |
| TCCAAGCAGTTGACAGAATA+TGG | + | chr3.4:100014857-100014876 | MS.gene014214:CDS | 40.0% | |
| TCCATATTCTGTCAACTGCT+TGG | - | chr3.4:100014861-100014880 | None:intergenic | 40.0% | |
| TCTCATATTAGAGTCTCCGA+TGG | + | chr3.4:100015570-100015589 | MS.gene014214:intron | 40.0% | |
| TGAGTACGAGCAGAACTATT+TGG | - | chr3.4:100015982-100016001 | None:intergenic | 40.0% | |
| TGCTTATGTCTACATTGCTG+TGG | + | chr3.4:100014771-100014790 | MS.gene014214:CDS | 40.0% | |
| TGGACAACAACTCATCTTCA+AGG | - | chr3.4:100014636-100014655 | None:intergenic | 40.0% | |
| TTGACAGAATATGGAACCGT+AGG | + | chr3.4:100014866-100014885 | MS.gene014214:CDS | 40.0% | |
| TTGTCTTTGTCGAGTTCCAT+CGG | - | chr3.4:100015589-100015608 | None:intergenic | 40.0% | |
| ! | AAGTGAATCCCCGTTCTTTT+GGG | - | chr3.4:100015713-100015732 | None:intergenic | 40.0% |
| ! | AGAGTCAATTTTGCTACAGC+TGG | - | chr3.4:100015674-100015693 | None:intergenic | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | + | chr3.4:100016060-100016079 | MS.gene014214:intron | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | - | chr3.4:100016079-100016060 | None:intergenic | 40.0% |
| ! | ATAACTCGGAAAGCGTGAAT+GGG | - | chr3.4:100015497-100015516 | None:intergenic | 40.0% |
| ! | CCAAAGCATCTATCGATGAA+TGG | + | chr3.4:100014653-100014672 | MS.gene014214:CDS | 40.0% |
| ! | GCATGTATCGTGAGTTGAAA+AGG | - | chr3.4:100014966-100014985 | None:intergenic | 40.0% |
| ! | TAAGTGAATCCCCGTTCTTT+TGG | - | chr3.4:100015714-100015733 | None:intergenic | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | + | chr3.4:100016059-100016078 | MS.gene014214:intron | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | - | chr3.4:100016078-100016059 | None:intergenic | 40.0% |
| ! | TGGTGTTTGGAATTCGTTCT+TGG | + | chr3.4:100014502-100014521 | MS.gene014214:CDS | 40.0% |
| !! | ATTATCGATTTCGGTGACTG+AGG | - | chr3.4:100014584-100014603 | None:intergenic | 40.0% |
| !! | GATTGATTTTGAGCAGCAGA+AGG | - | chr3.4:100015105-100015124 | None:intergenic | 40.0% |
| !! | TGAAAAGGGAAGCATCGATT+CGG | - | chr3.4:100014951-100014970 | None:intergenic | 40.0% |
| AAAGCGTGAATGGGGATTCA+GGG | - | chr3.4:100015488-100015507 | None:intergenic | 45.0% | |
| AACTAACGGAGTCTGCATTC+AGG | - | chr3.4:100016168-100016187 | None:intergenic | 45.0% | |
| ACTAACGGAGTCTGCATTCA+GGG | - | chr3.4:100016167-100016186 | None:intergenic | 45.0% | |
| ACTGCTTGGAGGTAGTGTTT+AGG | - | chr3.4:100014847-100014866 | None:intergenic | 45.0% | |
| AGCAGCAACAGAGTGAAGAA+AGG | - | chr3.4:100015082-100015101 | None:intergenic | 45.0% | |
| ATGGATGCTTGAACTTCTCG+AGG | + | chr3.4:100014672-100014691 | MS.gene014214:CDS | 45.0% | |
| ATTGCAGGCAGGAACATCAA+GGG | + | chr3.4:100016463-100016482 | MS.gene014214:CDS | 45.0% | |
| ATTTAGGCAAGCATGTGGGT+TGG | - | chr3.4:100015884-100015903 | None:intergenic | 45.0% | |
| CAATGGAAGGCTTAAAGGCA+AGG | + | chr3.4:100015606-100015625 | MS.gene014214:CDS | 45.0% | |
| CACAAATCAGGAGCCACAAA+TGG | + | chr3.4:100015831-100015850 | MS.gene014214:CDS | 45.0% | |
| CAGAAGGAAAGCCATTCAAG+AGG | + | chr3.4:100015011-100015030 | MS.gene014214:CDS | 45.0% | |
| CGTAGGTTTCAAAACCTGGA+GGG | + | chr3.4:100014883-100014902 | MS.gene014214:CDS | 45.0% | |
| CTCTTGAATGGCTTTCCTTC+TGG | - | chr3.4:100015013-100015032 | None:intergenic | 45.0% | |
| CTGCTTGGAGGTAGTGTTTA+GGG | - | chr3.4:100014846-100014865 | None:intergenic | 45.0% | |
| GAACCGTAGGTTTCAAAACC+TGG | + | chr3.4:100014879-100014898 | MS.gene014214:CDS | 45.0% | |
| GAAGAAGCTTTCTCCGTTGA+AGG | + | chr3.4:100016520-100016539 | MS.gene014214:CDS | 45.0% | |
| GACGAATCGTTTCCCATTCA+GGG | - | chr3.4:100016075-100016094 | None:intergenic | 45.0% | |
| GATGCTCGGAATAACCTTGT+AGG | + | chr3.4:100015051-100015070 | MS.gene014214:CDS | 45.0% | |
| GCAAATAACTTCTTCCCTCC+AGG | - | chr3.4:100014900-100014919 | None:intergenic | 45.0% | |
| GCAACAGAGTGAAGAAAGGA+AGG | - | chr3.4:100015078-100015097 | None:intergenic | 45.0% | |
| GCATCGCTAATAGGAGGATT+AGG | - | chr3.4:100014742-100014761 | None:intergenic | 45.0% | |
| GGAAGTTGCCTTCGTAAGAT+TGG | - | chr3.4:100015923-100015942 | None:intergenic | 45.0% | |
| GGAGGATTAGGGTTTGAAGA+AGG | - | chr3.4:100014730-100014749 | None:intergenic | 45.0% | |
| GTTAACGAGGCCCAAAAGAA+CGG | + | chr3.4:100015700-100015719 | MS.gene014214:CDS | 45.0% | |
| TAGTGGGATGATTCGATCGA+TGG | + | chr3.4:100016440-100016459 | MS.gene014214:intron | 45.0% | |
| TATGCAAAACAGTCCCTGCA+TGG | - | chr3.4:100016243-100016262 | None:intergenic | 45.0% | |
| TCCCTGAAATTGACCATGCA+GGG | + | chr3.4:100016227-100016246 | MS.gene014214:intron | 45.0% | |
| TCCCTGCATGGTCAATTTCA+GGG | - | chr3.4:100016231-100016250 | None:intergenic | 45.0% | |
| TGACGAATCGTTTCCCATTC+AGG | - | chr3.4:100016076-100016095 | None:intergenic | 45.0% | |
| TGACTCTTTGCCAGTTAACG+AGG | + | chr3.4:100015687-100015706 | MS.gene014214:CDS | 45.0% | |
| TGATGAGGCCAATCTTACGA+AGG | + | chr3.4:100015912-100015931 | MS.gene014214:CDS | 45.0% | |
| TTAACGAGGCCCAAAAGAAC+GGG | + | chr3.4:100015701-100015720 | MS.gene014214:CDS | 45.0% | |
| TTCATGGCATCGCTAATAGG+AGG | - | chr3.4:100014748-100014767 | None:intergenic | 45.0% | |
| TTGCTGTGGAATGTACCGTT+AGG | + | chr3.4:100014785-100014804 | MS.gene014214:CDS | 45.0% | |
| TTTAGGCAAGCATGTGGGTT+GGG | - | chr3.4:100015883-100015902 | None:intergenic | 45.0% | |
| ! | CATAACTCGGAAAGCGTGAA+TGG | - | chr3.4:100015498-100015517 | None:intergenic | 45.0% |
| ! | GTCACTTTAGTCCCTGAATG+GGG | - | chr3.4:100016080-100016061 | None:intergenic | 45.0% |
| ! | TAACTCGGAAAGCGTGAATG+GGG | - | chr3.4:100015496-100015515 | None:intergenic | 45.0% |
| ! | TGCTGCTTCAAGGTACCTAA+CGG | - | chr3.4:100014803-100014822 | None:intergenic | 45.0% |
| ! | TGGAGAAATTTGAAGCGGTC+TGG | + | chr3.4:100017133-100017152 | MS.gene014214:CDS | 45.0% |
| ! | TTCTTTTGGGCCTCGTTAAC+TGG | - | chr3.4:100015700-100015719 | None:intergenic | 45.0% |
| !! | TGATTCGATCGATGGATTGC+AGG | + | chr3.4:100016448-100016467 | MS.gene014214:CDS | 45.0% |
| !!! | CCTCCAGGTTTTGAAACCTA+CGG | - | chr3.4:100014885-100014904 | None:intergenic | 45.0% |
| CCGTAGGTTTCAAAACCTGG+AGG | + | chr3.4:100014882-100014901 | MS.gene014214:CDS | 50.0% | |
| GAAGAAAGGAAGGGCCTACA+AGG | - | chr3.4:100015068-100015087 | None:intergenic | 50.0% | |
| GACGAATCGTTCCCCATTCA+GGG | + | chr3.4:100016287-100016306 | MS.gene014214:intron | 50.0% | |
| GATTGCAGGCAGGAACATCA+AGG | + | chr3.4:100016462-100016481 | MS.gene014214:CDS | 50.0% | |
| GGAAAGGTTAGGGTGGTGTT+TGG | + | chr3.4:100014489-100014508 | MS.gene014214:CDS | 50.0% | |
| GGAGAAAGCTTCTTCCTCTC+TGG | - | chr3.4:100016515-100016534 | None:intergenic | 50.0% | |
| GTCCCTGAAATTGACCATGC+AGG | + | chr3.4:100016226-100016245 | MS.gene014214:intron | 50.0% | |
| GTCCCTGCATGGTCAATTTC+AGG | - | chr3.4:100016232-100016251 | None:intergenic | 50.0% | |
| GTTAGGTACCTTGAAGCAGC+AGG | + | chr3.4:100014802-100014821 | MS.gene014214:CDS | 50.0% | |
| TAACGAGGCCCAAAAGAACG+GGG | + | chr3.4:100015702-100015721 | MS.gene014214:CDS | 50.0% | |
| TGACGAATCGTTCCCCATTC+AGG | + | chr3.4:100016286-100016305 | MS.gene014214:intron | 50.0% | |
| TTCGTTTGCGTAGTCCAGAG+AGG | + | chr3.4:100016498-100016517 | MS.gene014214:CDS | 50.0% | |
| TTGCAGGCAGGAACATCAAG+GGG | + | chr3.4:100016464-100016483 | MS.gene014214:CDS | 50.0% | |
| ! | GAAAGCGTGAATGGGGATTC+AGG | - | chr3.4:100015489-100015508 | None:intergenic | 50.0% |
| ! | TAGTTCTGCTCGTACTCACG+AGG | + | chr3.4:100015984-100016003 | MS.gene014214:CDS | 50.0% |
| !! | CATTGTGTCGGTGTCAGACA+TGG | - | chr3.4:100015225-100015244 | None:intergenic | 50.0% |
| TACCTTGAAGCAGCAGGTGC+AGG | + | chr3.4:100014808-100014827 | MS.gene014214:CDS | 55.0% | |
| !! | TCGATCGATGGATTGCAGGC+AGG | + | chr3.4:100016452-100016471 | MS.gene014214:CDS | 55.0% |
| CTTGAAGCAGCAGGTGCAGG+TGG | + | chr3.4:100014811-100014830 | MS.gene014214:CDS | 60.0% | |
| GCGTGAATGGGGATTCAGGG+AGG | - | chr3.4:100015485-100015504 | None:intergenic | 60.0% | |
| ! | CACCTGCACCTGCTGCTTCA+AGG | - | chr3.4:100014813-100014832 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 100014487 | 100017165 | 100014487 | ID=MS.gene014214 |
| chr3.4 | mRNA | 100014487 | 100017165 | 100014487 | ID=MS.gene014214.t1;Parent=MS.gene014214 |
| chr3.4 | exon | 100014487 | 100015132 | 100014487 | ID=MS.gene014214.t1.exon1;Parent=MS.gene014214.t1 |
| chr3.4 | CDS | 100014487 | 100015132 | 100014487 | ID=cds.MS.gene014214.t1;Parent=MS.gene014214.t1 |
| chr3.4 | exon | 100015581 | 100016005 | 100015581 | ID=MS.gene014214.t1.exon2;Parent=MS.gene014214.t1 |
| chr3.4 | CDS | 100015581 | 100016005 | 100015581 | ID=cds.MS.gene014214.t1;Parent=MS.gene014214.t1 |
| chr3.4 | exon | 100016443 | 100016630 | 100016443 | ID=MS.gene014214.t1.exon3;Parent=MS.gene014214.t1 |
| chr3.4 | CDS | 100016443 | 100016630 | 100016443 | ID=cds.MS.gene014214.t1;Parent=MS.gene014214.t1 |
| chr3.4 | exon | 100016979 | 100017039 | 100016979 | ID=MS.gene014214.t1.exon4;Parent=MS.gene014214.t1 |
| chr3.4 | CDS | 100016979 | 100017039 | 100016979 | ID=cds.MS.gene014214.t1;Parent=MS.gene014214.t1 |
| chr3.4 | exon | 100017115 | 100017165 | 100017115 | ID=MS.gene014214.t1.exon5;Parent=MS.gene014214.t1 |
| chr3.4 | CDS | 100017115 | 100017165 | 100017115 | ID=cds.MS.gene014214.t1;Parent=MS.gene014214.t1 |
| Gene Sequence |
| Protein sequence |
