Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014247.t1 | ADD09607.1 | 76.6 | 274 | 37 | 6 | 1 | 247 | 1 | 274 | 6.30E-101 | 377.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014247.t1 | Q0IGM7 | 54.1 | 196 | 63 | 5 | 1 | 174 | 1 | 191 | 8.7e-43 | 175.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014247.t1 | D3YBF6 | 76.6 | 274 | 37 | 6 | 1 | 247 | 1 | 274 | 4.5e-101 | 377.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014247.t1 | TF | DBB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014247.t1 | MTR_3g117320 | 90.957 | 188 | 14 | 2 | 1 | 185 | 1 | 188 | 1.64e-120 | 343 |
| MS.gene014247.t1 | MTR_4g071200 | 57.297 | 185 | 70 | 4 | 1 | 183 | 1 | 178 | 5.01e-62 | 194 |
| MS.gene014247.t1 | MTR_3g113070 | 47.264 | 201 | 57 | 4 | 1 | 200 | 1 | 153 | 3.46e-54 | 174 |
| MS.gene014247.t1 | MTR_1g023260 | 51.149 | 174 | 75 | 3 | 1 | 174 | 1 | 164 | 9.00e-49 | 159 |
| MS.gene014247.t1 | MTR_1g023260 | 47.059 | 204 | 89 | 5 | 1 | 201 | 1 | 188 | 1.52e-48 | 161 |
| MS.gene014247.t1 | MTR_2g073370 | 55.738 | 122 | 53 | 1 | 1 | 122 | 1 | 121 | 4.08e-40 | 140 |
| MS.gene014247.t1 | MTR_4g067320 | 39.801 | 201 | 115 | 4 | 1 | 200 | 1 | 196 | 4.93e-36 | 128 |
| MS.gene014247.t1 | MTR_4g067320 | 38.725 | 204 | 114 | 5 | 1 | 200 | 1 | 197 | 2.59e-35 | 126 |
| MS.gene014247.t1 | MTR_2g099010 | 38.967 | 213 | 120 | 7 | 1 | 210 | 1 | 206 | 2.34e-34 | 124 |
| MS.gene014247.t1 | MTR_2g099010 | 52.294 | 109 | 51 | 1 | 1 | 109 | 1 | 108 | 1.50e-33 | 122 |
| MS.gene014247.t1 | MTR_5g021580 | 37.594 | 133 | 73 | 3 | 1 | 127 | 1 | 129 | 1.77e-23 | 94.0 |
| MS.gene014247.t1 | MTR_5g021580 | 37.594 | 133 | 73 | 3 | 1 | 127 | 1 | 129 | 1.91e-23 | 94.0 |
| MS.gene014247.t1 | MTR_1g013450 | 39.048 | 105 | 54 | 1 | 5 | 109 | 6 | 100 | 1.22e-17 | 80.9 |
| MS.gene014247.t1 | MTR_3g105710 | 37.113 | 97 | 51 | 1 | 5 | 101 | 6 | 92 | 8.70e-16 | 75.5 |
| MS.gene014247.t1 | MTR_4g128930 | 39.785 | 93 | 46 | 1 | 5 | 97 | 22 | 104 | 1.24e-15 | 75.9 |
| MS.gene014247.t1 | MTR_1g023260 | 37.857 | 140 | 68 | 5 | 65 | 201 | 57 | 180 | 6.55e-14 | 69.7 |
| MS.gene014247.t1 | MTR_7g018170 | 36.559 | 93 | 49 | 1 | 5 | 97 | 26 | 108 | 2.02e-13 | 69.3 |
| MS.gene014247.t1 | MTR_5g069480 | 35.052 | 97 | 53 | 2 | 1 | 97 | 1 | 87 | 4.71e-13 | 68.2 |
| MS.gene014247.t1 | MTR_5g069480 | 35.052 | 97 | 53 | 2 | 1 | 97 | 1 | 87 | 5.58e-13 | 67.4 |
| MS.gene014247.t1 | MTR_3g082630 | 30.769 | 182 | 96 | 6 | 1 | 167 | 1 | 167 | 9.34e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014247.t1 | AT4G39070 | 55.497 | 191 | 68 | 5 | 1 | 174 | 1 | 191 | 1.97e-53 | 173 |
| MS.gene014247.t1 | AT1G75540 | 48.020 | 202 | 90 | 5 | 1 | 187 | 1 | 202 | 1.50e-52 | 173 |
| MS.gene014247.t1 | AT1G06040 | 52.593 | 135 | 62 | 2 | 1 | 135 | 1 | 133 | 1.43e-40 | 138 |
| MS.gene014247.t1 | AT1G78600 | 51.163 | 129 | 59 | 2 | 1 | 129 | 1 | 125 | 2.76e-39 | 138 |
| MS.gene014247.t1 | AT1G06040 | 52.593 | 135 | 62 | 2 | 1 | 135 | 1 | 133 | 3.65e-39 | 136 |
| MS.gene014247.t1 | AT1G78600 | 51.163 | 129 | 59 | 2 | 1 | 129 | 1 | 125 | 4.64e-39 | 138 |
| MS.gene014247.t1 | AT4G10240 | 54.688 | 128 | 48 | 3 | 1 | 122 | 1 | 124 | 4.84e-38 | 130 |
| MS.gene014247.t1 | AT2G31380 | 38.117 | 223 | 114 | 8 | 1 | 208 | 1 | 214 | 3.73e-36 | 128 |
| MS.gene014247.t1 | AT4G38960 | 39.316 | 117 | 67 | 2 | 1 | 117 | 1 | 113 | 1.70e-23 | 94.0 |
| MS.gene014247.t1 | AT4G38960 | 39.316 | 117 | 67 | 2 | 1 | 117 | 1 | 113 | 1.70e-23 | 94.0 |
| MS.gene014247.t1 | AT2G21320 | 44.000 | 100 | 52 | 2 | 1 | 100 | 1 | 96 | 1.68e-22 | 90.9 |
| MS.gene014247.t1 | AT2G24790 | 39.785 | 93 | 46 | 1 | 5 | 97 | 8 | 90 | 4.53e-17 | 77.8 |
| MS.gene014247.t1 | AT2G24790 | 39.785 | 93 | 46 | 1 | 5 | 97 | 8 | 90 | 1.25e-16 | 77.8 |
| MS.gene014247.t1 | AT4G38960 | 28.750 | 160 | 67 | 3 | 1 | 117 | 1 | 156 | 9.50e-16 | 74.3 |
| MS.gene014247.t1 | AT5G24930 | 37.634 | 93 | 48 | 1 | 5 | 97 | 6 | 88 | 1.23e-15 | 75.9 |
| MS.gene014247.t1 | AT5G15850 | 32.520 | 123 | 72 | 2 | 5 | 126 | 12 | 124 | 2.12e-14 | 72.0 |
| MS.gene014247.t1 | AT3G02380 | 34.286 | 105 | 57 | 2 | 5 | 109 | 16 | 108 | 1.94e-13 | 69.3 |
| MS.gene014247.t1 | AT2G47890 | 35.593 | 118 | 55 | 3 | 5 | 111 | 13 | 120 | 1.38e-12 | 65.9 |
| MS.gene014247.t1 | AT2G47890 | 41.176 | 85 | 40 | 2 | 5 | 89 | 13 | 87 | 1.73e-12 | 66.2 |
| MS.gene014247.t1 | AT2G47890 | 41.176 | 85 | 40 | 2 | 5 | 89 | 13 | 87 | 2.13e-12 | 66.2 |
| MS.gene014247.t1 | AT1G28050 | 34.653 | 101 | 56 | 1 | 2 | 102 | 6 | 96 | 2.32e-12 | 66.2 |
| MS.gene014247.t1 | AT5G15840 | 31.132 | 106 | 61 | 2 | 5 | 110 | 20 | 113 | 3.35e-12 | 65.9 |
| MS.gene014247.t1 | AT2G33500 | 33.000 | 100 | 57 | 1 | 3 | 102 | 10 | 99 | 4.63e-12 | 65.5 |
| MS.gene014247.t1 | AT2G33500 | 33.000 | 100 | 57 | 1 | 3 | 102 | 10 | 99 | 4.86e-12 | 65.5 |
| MS.gene014247.t1 | AT5G15840 | 31.132 | 106 | 61 | 2 | 5 | 110 | 20 | 113 | 6.32e-12 | 64.3 |
Find 43 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTATGGATGTACAGTTTC+AGG | 0.215995 | 3.3:+95263508 | MS.gene014247:CDS |
| TTTGATCTAGAGTGGTTTCT+TGG | 0.257986 | 3.3:-95262229 | None:intergenic |
| ACTTCAAAATGGAAAGATTA+TGG | 0.271971 | 3.3:+95263493 | MS.gene014247:CDS |
| GAAGCTTTCAAGCAATTCTT+TGG | 0.294858 | 3.3:+95262171 | MS.gene014247:CDS |
| CAAAAGTGAACACTTCAAAA+TGG | 0.317889 | 3.3:+95263482 | MS.gene014247:CDS |
| ATAGAATCGCTCTATCTTCT+TGG | 0.325288 | 3.3:-95262072 | None:intergenic |
| TCTTGGTTCAGAGCCAATAC+TGG | 0.407926 | 3.3:-95262212 | None:intergenic |
| GCAGAAGCAGAATCATTATT+CGG | 0.420688 | 3.3:+95263349 | MS.gene014247:intron |
| ATCACAAAGAGGGTAGTCTT+TGG | 0.421009 | 3.3:-95261854 | None:intergenic |
| AACCAGGTATTGTTTCAATC+AGG | 0.422845 | 3.3:-95262366 | None:intergenic |
| ACCACTGAGCTAATATTAGA+AGG | 0.428353 | 3.3:-95263442 | None:intergenic |
| AACATACACAGAAACATAAC+AGG | 0.440782 | 3.3:+95262131 | MS.gene014247:CDS |
| CATAACAGGTTTCTTCTCTC+TGG | 0.447881 | 3.3:+95262145 | MS.gene014247:CDS |
| GTGTATGTTCATTTGCTCCA+TGG | 0.455691 | 3.3:-95262117 | None:intergenic |
| GTGTTTGGTTGCAAGCTTGT+TGG | 0.456215 | 3.3:-95261803 | None:intergenic |
| TTATTCGGCACCTCTAGCTC+AGG | 0.475060 | 3.3:+95263390 | MS.gene014247:CDS |
| CATTTGCTCCATGGATTGGA+AGG | 0.479724 | 3.3:-95262108 | None:intergenic |
| ATACTGGTGGATGATGAATC+TGG | 0.490828 | 3.3:-95262196 | None:intergenic |
| GATTCATCATCCACCAGTAT+TGG | 0.497576 | 3.3:+95262199 | MS.gene014247:CDS |
| TGTTCATTTGCTCCATGGAT+TGG | 0.505507 | 3.3:-95262112 | None:intergenic |
| GAATGTGACCTTCCAATCCA+TGG | 0.511555 | 3.3:+95262100 | MS.gene014247:CDS |
| GAGGGTAGTCTTTGGAGTTG+AGG | 0.523182 | 3.3:-95261846 | None:intergenic |
| GATGAAGCTGCTCTTTGCCA+TGG | 0.528890 | 3.3:+95261757 | MS.gene014247:CDS |
| GACAACATGGCTAGTGACAC+TGG | 0.532967 | 3.3:+95262313 | MS.gene014247:CDS |
| TCTAATATTAGCTCAGTGGT+TGG | 0.556823 | 3.3:+95263445 | MS.gene014247:CDS |
| AAATGCAAGTTCTTCTTGCA+TGG | 0.564285 | 3.3:+95262285 | MS.gene014247:CDS |
| GCTGATTCAGCCTGAGCTAG+AGG | 0.566827 | 3.3:-95263400 | None:intergenic |
| GAGCTAATATTAGAAGGAGT+AGG | 0.569687 | 3.3:-95263436 | None:intergenic |
| CTTTCTCACACACATCACAT+TGG | 0.572968 | 3.3:-95261708 | None:intergenic |
| TGGTTCAGAGCCAATACTGG+TGG | 0.580417 | 3.3:-95262209 | None:intergenic |
| TGGTTGCAAGCTTGTTGGCA+CGG | 0.580653 | 3.3:-95261798 | None:intergenic |
| TTCATCTGAAGGACAGAACA+TGG | 0.588007 | 3.3:-95261740 | None:intergenic |
| GGTAGTCTTTGGAGTTGAGG+TGG | 0.590439 | 3.3:-95261843 | None:intergenic |
| CAAAGAGCAGCTTCATCTGA+AGG | 0.591587 | 3.3:-95261751 | None:intergenic |
| GGATTGTATGATCACATCCA+TGG | 0.608665 | 3.3:-95261774 | None:intergenic |
| TACTGGTGGATGATGAATCT+GGG | 0.618443 | 3.3:-95262195 | None:intergenic |
| TACCTGATTGAAACAATACC+TGG | 0.621076 | 3.3:+95262364 | MS.gene014247:CDS |
| TTGCATGGCTGAAGACAACA+TGG | 0.623591 | 3.3:+95262300 | MS.gene014247:CDS |
| TCCTTCTAATATTAGCTCAG+TGG | 0.624133 | 3.3:+95263441 | MS.gene014247:CDS |
| CTTGACAGATATCACAAAGA+GGG | 0.634180 | 3.3:-95261864 | None:intergenic |
| ACTTGACAGATATCACAAAG+AGG | 0.665459 | 3.3:-95261865 | None:intergenic |
| TTGCAAGCTTGTTGGCACGG+TGG | 0.712576 | 3.3:-95261795 | None:intergenic |
| TGATGTGTGTGAGAAAGCTG+AGG | 0.739027 | 3.3:+95261714 | MS.gene014247:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAATTAACTTAAAAAT+AGG | + | chr3.3:95263071-95263090 | MS.gene014247:intron | 10.0% |
| !! | CAAAAATTAACTTAAAAATA+GGG | + | chr3.3:95263072-95263091 | MS.gene014247:intron | 10.0% |
| !! | GAAAAATTAGTATATTTATA+GGG | + | chr3.3:95263163-95263182 | MS.gene014247:intron | 10.0% |
| !! | GAAAAGTTAATATATTTATA+AGG | - | chr3.3:95262728-95262747 | None:intergenic | 10.0% |
| !! | TGAAAAATTAGTATATTTAT+AGG | + | chr3.3:95263162-95263181 | MS.gene014247:intron | 10.0% |
| !!! | AAAAAATTCTAGTTTTTTTT+GGG | + | chr3.3:95262998-95263017 | MS.gene014247:intron | 10.0% |
| !!! | GTCATTTTTTTTTATAAAAA+CGG | + | chr3.3:95261899-95261918 | MS.gene014247:intron | 10.0% |
| !!! | TAAAAAATTCTAGTTTTTTT+TGG | + | chr3.3:95262997-95263016 | MS.gene014247:intron | 10.0% |
| !! | TGTTACAAAATATAAACAAA+AGG | + | chr3.3:95262549-95262568 | MS.gene014247:intron | 15.0% |
| !!! | AAGTAGATAATTTTTTTTGA+AGG | - | chr3.3:95262510-95262529 | None:intergenic | 15.0% |
| !!! | ACTTTTGTTTATATTTGTAA+GGG | + | chr3.3:95262637-95262656 | MS.gene014247:intron | 15.0% |
| !!! | AGTAGATAATTTTTTTTGAA+GGG | - | chr3.3:95262509-95262528 | None:intergenic | 15.0% |
| !!! | ATGAATTTTTGTATTTTTGA+AGG | + | chr3.3:95262944-95262963 | MS.gene014247:intron | 15.0% |
| !!! | TACTTTTGTTTATATTTGTA+AGG | + | chr3.3:95262636-95262655 | MS.gene014247:intron | 15.0% |
| !! | CTTATAATAATAACTCTTCT+GGG | + | chr3.3:95263296-95263315 | MS.gene014247:intron | 20.0% |
| !! | TCAAAGAAAATTGATGTATT+TGG | - | chr3.3:95262614-95262633 | None:intergenic | 20.0% |
| !! | TCTTATAATAATAACTCTTC+TGG | + | chr3.3:95263295-95263314 | MS.gene014247:intron | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | - | chr3.3:95262820-95262839 | None:intergenic | 20.0% |
| !!! | ATGTGACTAATGTTTTAAAA+TGG | + | chr3.3:95261981-95262000 | MS.gene014247:intron | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | - | chr3.3:95262819-95262838 | None:intergenic | 20.0% |
| !!! | TGGTGATTGAAAATTTTATA+GGG | + | chr3.3:95263103-95263122 | MS.gene014247:intron | 20.0% |
| !!! | TTGTTTATATTTTGTAACAG+AGG | - | chr3.3:95262548-95262567 | None:intergenic | 20.0% |
| ! | ACTTCAAAATGGAAAGATTA+TGG | + | chr3.3:95263493-95263512 | MS.gene014247:CDS | 25.0% |
| ! | TGAAAATGGGAAAATTTGAA+GGG | - | chr3.3:95262788-95262807 | None:intergenic | 25.0% |
| ! | TTTCCATAATACTATACTCT+TGG | - | chr3.3:95262664-95262683 | None:intergenic | 25.0% |
| !! | AAGAGTATAGTATTATGGAA+AGG | + | chr3.3:95262663-95262682 | MS.gene014247:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr3.3:95262760-95262779 | None:intergenic | 25.0% |
| !! | AATTTTCCCATTTTCACTTT+TGG | + | chr3.3:95262792-95262811 | MS.gene014247:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr3.3:95262759-95262778 | None:intergenic | 25.0% |
| !! | GTGGTGATTGAAAATTTTAT+AGG | + | chr3.3:95263102-95263121 | MS.gene014247:intron | 25.0% |
| !! | TTATATTTTGTAACAGAGGA+AGG | - | chr3.3:95262544-95262563 | None:intergenic | 25.0% |
| !! | TTCAGTACCAAGTTTTTATT+CGG | + | chr3.3:95263375-95263394 | MS.gene014247:CDS | 25.0% |
| !!! | TTTTTTTATAAAAACGGTCG+CGG | + | chr3.3:95261905-95261924 | MS.gene014247:intron | 25.0% |
| AACATACACAGAAACATAAC+AGG | + | chr3.3:95262131-95262150 | MS.gene014247:CDS | 30.0% | |
| ATTAAAGATCCAGATGCAAA+CGG | - | chr3.3:95261940-95261959 | None:intergenic | 30.0% | |
| CAAAAGTGAACACTTCAAAA+TGG | + | chr3.3:95263482-95263501 | MS.gene014247:CDS | 30.0% | |
| GTGAAAATGGGAAAATTTGA+AGG | - | chr3.3:95262789-95262808 | None:intergenic | 30.0% | |
| TAAACCTTACAGAAACCATT+AGG | - | chr3.3:95262427-95262446 | None:intergenic | 30.0% | |
| TATAGGGACTAAAAGTTGAA+GGG | + | chr3.3:95263119-95263138 | MS.gene014247:intron | 30.0% | |
| TTAAAAATAGGGAGCAAAAG+TGG | + | chr3.3:95263083-95263102 | MS.gene014247:intron | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | + | chr3.3:95263118-95263137 | MS.gene014247:intron | 30.0% | |
| ! | AAGTTGAAGGGAAATTTTAG+AGG | + | chr3.3:95263131-95263150 | MS.gene014247:intron | 30.0% |
| ! | AGAAGAACTTGCATTTTCAT+TGG | - | chr3.3:95262281-95262300 | None:intergenic | 30.0% |
| ! | AGTTGAAGGGAAATTTTAGA+GGG | + | chr3.3:95263132-95263151 | MS.gene014247:intron | 30.0% |
| ! | TTTTCATTGGAAACTGATCT+TGG | - | chr3.3:95262268-95262287 | None:intergenic | 30.0% |
| AAATGCAAGTTCTTCTTGCA+TGG | + | chr3.3:95262285-95262304 | MS.gene014247:CDS | 35.0% | |
| AAGTCTTCAAAACAGTAACC+AGG | - | chr3.3:95262385-95262404 | None:intergenic | 35.0% | |
| ACCACTGAGCTAATATTAGA+AGG | - | chr3.3:95263445-95263464 | None:intergenic | 35.0% | |
| ACTTGACAGATATCACAAAG+AGG | - | chr3.3:95261868-95261887 | None:intergenic | 35.0% | |
| ATAGAATCGCTCTATCTTCT+TGG | - | chr3.3:95262075-95262094 | None:intergenic | 35.0% | |
| CTTGACAGATATCACAAAGA+GGG | - | chr3.3:95261867-95261886 | None:intergenic | 35.0% | |
| GAAGCTTTCAAGCAATTCTT+TGG | + | chr3.3:95262171-95262190 | MS.gene014247:CDS | 35.0% | |
| GAGCTAATATTAGAAGGAGT+AGG | - | chr3.3:95263439-95263458 | None:intergenic | 35.0% | |
| GATTATGGATGTACAGTTTC+AGG | + | chr3.3:95263508-95263527 | MS.gene014247:CDS | 35.0% | |
| GCAGAAGCAGAATCATTATT+CGG | + | chr3.3:95263349-95263368 | MS.gene014247:intron | 35.0% | |
| TACCTGATTGAAACAATACC+TGG | + | chr3.3:95262364-95262383 | MS.gene014247:CDS | 35.0% | |
| TCCTTCTAATATTAGCTCAG+TGG | + | chr3.3:95263441-95263460 | MS.gene014247:CDS | 35.0% | |
| TCTAATATTAGCTCAGTGGT+TGG | + | chr3.3:95263445-95263464 | MS.gene014247:CDS | 35.0% | |
| TGAAATTGTGCAGAAATACG+TGG | - | chr3.3:95263042-95263061 | None:intergenic | 35.0% | |
| TTGAAGGGACTAAAAGTTGA+AGG | - | chr3.3:95262773-95262792 | None:intergenic | 35.0% | |
| ! | AACCAGGTATTGTTTCAATC+AGG | - | chr3.3:95262369-95262388 | None:intergenic | 35.0% |
| ! | GGTCCAAGAGTATAGTATTA+TGG | + | chr3.3:95262658-95262677 | MS.gene014247:intron | 35.0% |
| ! | TTTGATCTAGAGTGGTTTCT+TGG | - | chr3.3:95262232-95262251 | None:intergenic | 35.0% |
| !! | TGTTTGCTTTTGATCTAGAG+TGG | - | chr3.3:95262240-95262259 | None:intergenic | 35.0% |
| ACCTTACAGAAACCATTAGG+TGG | - | chr3.3:95262424-95262443 | None:intergenic | 40.0% | |
| AGAGGGACCAAAAGTGAAAA+TGG | - | chr3.3:95262802-95262821 | None:intergenic | 40.0% | |
| ATCACAAAGAGGGTAGTCTT+TGG | - | chr3.3:95261857-95261876 | None:intergenic | 40.0% | |
| CATAACAGGTTTCTTCTCTC+TGG | + | chr3.3:95262145-95262164 | MS.gene014247:CDS | 40.0% | |
| CCTTACAGAAACCATTAGGT+GGG | - | chr3.3:95262423-95262442 | None:intergenic | 40.0% | |
| CTTTCTCACACACATCACAT+TGG | - | chr3.3:95261711-95261730 | None:intergenic | 40.0% | |
| GAGAGAAAAACGAGTGTGTT+TGG | - | chr3.3:95261821-95261840 | None:intergenic | 40.0% | |
| GAGGGACCAAAAGTGAAAAT+GGG | - | chr3.3:95262801-95262820 | None:intergenic | 40.0% | |
| GATTCATCATCCACCAGTAT+TGG | + | chr3.3:95262199-95262218 | MS.gene014247:CDS | 40.0% | |
| GGATTGTATGATCACATCCA+TGG | - | chr3.3:95261777-95261796 | None:intergenic | 40.0% | |
| GTGTATGTTCATTTGCTCCA+TGG | - | chr3.3:95262120-95262139 | None:intergenic | 40.0% | |
| TATAAAAACGGTCGCGGTAA+AGG | + | chr3.3:95261911-95261930 | MS.gene014247:intron | 40.0% | |
| TGTTCATTTGCTCCATGGAT+TGG | - | chr3.3:95262115-95262134 | None:intergenic | 40.0% | |
| TTCATCTGAAGGACAGAACA+TGG | - | chr3.3:95261743-95261762 | None:intergenic | 40.0% | |
| ! | AATATCGTGCGCTTTTGTAC+AGG | + | chr3.3:95262027-95262046 | MS.gene014247:intron | 40.0% |
| ! | ATACTGGTGGATGATGAATC+TGG | - | chr3.3:95262199-95262218 | None:intergenic | 40.0% |
| ! | TACTGGTGGATGATGAATCT+GGG | - | chr3.3:95262198-95262217 | None:intergenic | 40.0% |
| !! | AGAGGTGCCGAATAAAAACT+TGG | - | chr3.3:95263385-95263404 | None:intergenic | 40.0% |
| CAAAGAGCAGCTTCATCTGA+AGG | - | chr3.3:95261754-95261773 | None:intergenic | 45.0% | |
| CCCACCTAATGGTTTCTGTA+AGG | + | chr3.3:95262420-95262439 | MS.gene014247:intron | 45.0% | |
| GAATGTGACCTTCCAATCCA+TGG | + | chr3.3:95262100-95262119 | MS.gene014247:CDS | 45.0% | |
| GATGCTTCTTTCCCACCTAA+TGG | + | chr3.3:95262409-95262428 | MS.gene014247:intron | 45.0% | |
| GTGTTTGGTTGCAAGCTTGT+TGG | - | chr3.3:95261806-95261825 | None:intergenic | 45.0% | |
| TCTTGGTTCAGAGCCAATAC+TGG | - | chr3.3:95262215-95262234 | None:intergenic | 45.0% | |
| TGATGTGTGTGAGAAAGCTG+AGG | + | chr3.3:95261714-95261733 | MS.gene014247:CDS | 45.0% | |
| TTGCATGGCTGAAGACAACA+TGG | + | chr3.3:95262300-95262319 | MS.gene014247:CDS | 45.0% | |
| ! | TAAAGGTTGCCGTTTGCATC+TGG | + | chr3.3:95261928-95261947 | MS.gene014247:intron | 45.0% |
| !! | CATTTGCTCCATGGATTGGA+AGG | - | chr3.3:95262111-95262130 | None:intergenic | 45.0% |
| !! | ATAAATTTAAGTATAATAAA+GGG | - | chr3.3:95262462-95262481 | None:intergenic | 5.0% |
| !! | TATAAATTTAAGTATAATAA+AGG | - | chr3.3:95262463-95262482 | None:intergenic | 5.0% |
| !!! | AATAATGTAATATTTTAATA+AGG | - | chr3.3:95263207-95263226 | None:intergenic | 5.0% |
| !!! | ATAATGTAATATTTTAATAA+GGG | - | chr3.3:95263206-95263225 | None:intergenic | 5.0% |
| GACAACATGGCTAGTGACAC+TGG | + | chr3.3:95262313-95262332 | MS.gene014247:CDS | 50.0% | |
| GATGAAGCTGCTCTTTGCCA+TGG | + | chr3.3:95261757-95261776 | MS.gene014247:CDS | 50.0% | |
| TGGTTCAGAGCCAATACTGG+TGG | - | chr3.3:95262212-95262231 | None:intergenic | 50.0% | |
| ! | TTATTCGGCACCTCTAGCTC+AGG | + | chr3.3:95263390-95263409 | MS.gene014247:CDS | 50.0% |
| !! | GAGGGTAGTCTTTGGAGTTG+AGG | - | chr3.3:95261849-95261868 | None:intergenic | 50.0% |
| !! | GGTAGTCTTTGGAGTTGAGG+TGG | - | chr3.3:95261846-95261865 | None:intergenic | 50.0% |
| !! | TGGTTGCAAGCTTGTTGGCA+CGG | - | chr3.3:95261801-95261820 | None:intergenic | 50.0% |
| ! | CGTGCGCTTTTGTACAGGAG+AGG | + | chr3.3:95262032-95262051 | MS.gene014247:intron | 55.0% |
| ! | GCTGATTCAGCCTGAGCTAG+AGG | - | chr3.3:95263403-95263422 | None:intergenic | 55.0% |
| ! | GCTTTTGTACAGGAGAGGCG+TGG | + | chr3.3:95262037-95262056 | MS.gene014247:intron | 55.0% |
| !! | TTGCAAGCTTGTTGGCACGG+TGG | - | chr3.3:95261798-95261817 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 95261700 | 95263573 | 95261700 | ID=MS.gene014247 |
| chr3.3 | mRNA | 95261700 | 95263573 | 95261700 | ID=MS.gene014247.t1;Parent=MS.gene014247 |
| chr3.3 | exon | 95261700 | 95261885 | 95261700 | ID=MS.gene014247.t1.exon1;Parent=MS.gene014247.t1 |
| chr3.3 | CDS | 95261700 | 95261885 | 95261700 | ID=cds.MS.gene014247.t1;Parent=MS.gene014247.t1 |
| chr3.3 | exon | 95262049 | 95262385 | 95262049 | ID=MS.gene014247.t1.exon2;Parent=MS.gene014247.t1 |
| chr3.3 | CDS | 95262049 | 95262385 | 95262049 | ID=cds.MS.gene014247.t1;Parent=MS.gene014247.t1 |
| chr3.3 | exon | 95263353 | 95263573 | 95263353 | ID=MS.gene014247.t1.exon3;Parent=MS.gene014247.t1 |
| chr3.3 | CDS | 95263353 | 95263573 | 95263353 | ID=cds.MS.gene014247.t1;Parent=MS.gene014247.t1 |
| Gene Sequence |
| Protein sequence |
