Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014331.t1 | XP_013462298.1 | 94.9 | 176 | 9 | 0 | 1 | 176 | 25 | 200 | 1.60E-89 | 339 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014331.t1 | Q5QMM3 | 69.1 | 152 | 44 | 3 | 1 | 151 | 35 | 184 | 1.9e-51 | 203.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014331.t1 | A0A072V4R9 | 94.9 | 176 | 9 | 0 | 1 | 176 | 25 | 200 | 1.1e-89 | 339.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014331.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014331.t1 | MTR_3g115620 | 94.886 | 176 | 9 | 0 | 1 | 176 | 25 | 200 | 9.51e-126 | 353 |
| MS.gene014331.t1 | MTR_1g115315 | 71.329 | 143 | 37 | 3 | 1 | 143 | 30 | 168 | 4.05e-68 | 209 |
| MS.gene014331.t1 | MTR_1g115315 | 71.329 | 143 | 37 | 3 | 1 | 143 | 30 | 168 | 5.17e-68 | 209 |
| MS.gene014331.t1 | MTR_7g023810 | 46.821 | 173 | 66 | 4 | 1 | 170 | 27 | 176 | 1.14e-41 | 139 |
| MS.gene014331.t1 | MTR_2g015000 | 37.363 | 91 | 56 | 1 | 28 | 117 | 24 | 114 | 5.32e-15 | 73.2 |
| MS.gene014331.t1 | MTR_4g084550 | 44.262 | 61 | 34 | 0 | 58 | 118 | 64 | 124 | 4.65e-14 | 67.8 |
| MS.gene014331.t1 | MTR_1g019130 | 39.506 | 81 | 49 | 0 | 53 | 133 | 85 | 165 | 3.25e-13 | 66.2 |
| MS.gene014331.t1 | MTR_7g025010 | 44.444 | 63 | 35 | 0 | 56 | 118 | 45 | 107 | 4.39e-13 | 67.8 |
| MS.gene014331.t1 | MTR_4g088070 | 36.585 | 82 | 52 | 0 | 56 | 137 | 27 | 108 | 7.63e-13 | 66.6 |
| MS.gene014331.t1 | MTR_1g019130 | 39.506 | 81 | 49 | 0 | 53 | 133 | 85 | 165 | 9.17e-13 | 65.1 |
| MS.gene014331.t1 | MTR_8g107210 | 44.262 | 61 | 34 | 0 | 58 | 118 | 96 | 156 | 3.53e-12 | 64.7 |
| MS.gene014331.t1 | MTR_4g088080 | 45.000 | 60 | 33 | 0 | 56 | 115 | 38 | 97 | 7.31e-12 | 63.5 |
| MS.gene014331.t1 | MTR_4g063735 | 42.623 | 61 | 35 | 0 | 58 | 118 | 25 | 85 | 2.64e-11 | 61.6 |
| MS.gene014331.t1 | MTR_7g060630 | 45.000 | 60 | 33 | 0 | 58 | 117 | 8 | 67 | 7.44e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014331.t1 | AT4G35550 | 55.676 | 185 | 66 | 3 | 2 | 171 | 44 | 227 | 2.00e-60 | 190 |
| MS.gene014331.t1 | AT1G20700 | 46.629 | 178 | 82 | 4 | 1 | 176 | 36 | 202 | 4.34e-51 | 164 |
| MS.gene014331.t1 | AT1G20700 | 50.000 | 158 | 74 | 3 | 1 | 156 | 36 | 190 | 1.33e-50 | 162 |
| MS.gene014331.t1 | AT1G20700 | 46.715 | 137 | 62 | 2 | 40 | 176 | 15 | 140 | 6.27e-40 | 134 |
| MS.gene014331.t1 | AT1G20710 | 43.820 | 178 | 90 | 5 | 1 | 176 | 20 | 189 | 5.84e-33 | 117 |
| MS.gene014331.t1 | AT5G45980 | 46.774 | 62 | 33 | 0 | 56 | 117 | 53 | 114 | 2.00e-14 | 70.9 |
| MS.gene014331.t1 | AT2G33880 | 45.161 | 62 | 34 | 0 | 56 | 117 | 53 | 114 | 4.70e-14 | 70.1 |
| MS.gene014331.t1 | AT2G33880 | 45.161 | 62 | 34 | 0 | 56 | 117 | 53 | 114 | 5.03e-14 | 70.1 |
| MS.gene014331.t1 | AT1G46480 | 47.541 | 61 | 32 | 0 | 58 | 118 | 90 | 150 | 1.45e-13 | 66.6 |
| MS.gene014331.t1 | AT1G46480 | 47.541 | 61 | 32 | 0 | 58 | 118 | 90 | 150 | 4.27e-13 | 66.2 |
| MS.gene014331.t1 | AT3G18010 | 40.845 | 71 | 42 | 0 | 58 | 128 | 76 | 146 | 5.29e-13 | 67.0 |
| MS.gene014331.t1 | AT3G11260 | 36.458 | 96 | 56 | 2 | 58 | 150 | 24 | 117 | 2.22e-12 | 63.2 |
| MS.gene014331.t1 | AT2G28610 | 46.667 | 60 | 32 | 0 | 58 | 117 | 8 | 67 | 7.17e-12 | 62.8 |
| MS.gene014331.t1 | AT5G05770 | 33.333 | 84 | 55 | 1 | 58 | 141 | 29 | 111 | 1.13e-11 | 60.1 |
| MS.gene014331.t1 | AT5G59340 | 43.077 | 65 | 37 | 0 | 54 | 118 | 10 | 74 | 1.74e-11 | 62.0 |
| MS.gene014331.t1 | AT2G01500 | 35.577 | 104 | 57 | 2 | 44 | 137 | 37 | 140 | 4.16e-11 | 61.2 |
Find 38 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGAGACTAATGTTTATAAT+TGG | 0.232522 | 3.4:+98787464 | MS.gene014331:CDS |
| TTGAACGAGCTCTTCTGTTC+TGG | 0.269547 | 3.4:-98787489 | None:intergenic |
| ACAATTCTCTGTGTTCAGTT+AGG | 0.322962 | 3.4:+98787810 | MS.gene014331:CDS |
| CAATTCTCTGTGTTCAGTTA+GGG | 0.363937 | 3.4:+98787811 | MS.gene014331:CDS |
| TATGTCTTTGATCTTCTGTT+TGG | 0.364760 | 3.4:-98787410 | None:intergenic |
| TCAACTTCTGTGTCTGCCTC+TGG | 0.402663 | 3.4:-98787553 | None:intergenic |
| GTCTTTGATCTTCTGTTTGG+TGG | 0.403902 | 3.4:-98787407 | None:intergenic |
| CGTTGGAGTCCAACGCTGCC+TGG | 0.416225 | 3.4:-98787332 | None:intergenic |
| CTGGACACAAGATAACTTCC+AGG | 0.432136 | 3.4:+98787314 | MS.gene014331:CDS |
| CTCAACAAGCTGATCAGAAA+TGG | 0.436221 | 3.4:-98785936 | None:intergenic |
| TGAGAGTTTATCACCTCATC+GGG | 0.446050 | 3.4:+98787627 | MS.gene014331:CDS |
| CCACTGATGATGGCTTGCTC+TGG | 0.448763 | 3.4:+98787295 | MS.gene014331:CDS |
| TCTTTGATCTTCTGTTTGGT+GGG | 0.460764 | 3.4:-98787406 | None:intergenic |
| TTGAGAGTTTATCACCTCAT+CGG | 0.471970 | 3.4:+98787626 | MS.gene014331:CDS |
| ACCGTGTTGCCCTAGTTCAA+TGG | 0.479896 | 3.4:-98787434 | None:intergenic |
| CACATGAAGAAATTCGTGTA+AGG | 0.493478 | 3.4:+98787766 | MS.gene014331:CDS |
| TACGCTCAAGTATTTGAAGC+TGG | 0.512249 | 3.4:-98787360 | None:intergenic |
| ATTTGAAGCTGGATAGGCGT+TGG | 0.517894 | 3.4:-98787349 | None:intergenic |
| TTAAGATTAATACCTATGTC+AGG | 0.524253 | 3.4:-98787673 | None:intergenic |
| GTACTGTGATCCACTGATGA+TGG | 0.540609 | 3.4:+98787285 | MS.gene014331:CDS |
| TCAAGTATTTGAAGCTGGAT+AGG | 0.541162 | 3.4:-98787355 | None:intergenic |
| AAGCAATCATCTGTTACTGC+AGG | 0.542364 | 3.4:+98787517 | MS.gene014331:CDS |
| GAATGTTCAGGACTGAGACT+TGG | 0.551998 | 3.4:+98787256 | MS.gene014331:intron |
| ACCTGCGAGGTCGTGTTGAG+TGG | 0.570461 | 3.4:-98785975 | None:intergenic |
| AAAGACATAACCATTGAACT+AGG | 0.570662 | 3.4:+98787424 | MS.gene014331:CDS |
| ATTGTCAATCGTATCGAACA+TGG | 0.574843 | 3.4:-98787792 | None:intergenic |
| ACCACTCAACACGACCTCGC+AGG | 0.579613 | 3.4:+98785974 | MS.gene014331:CDS |
| CCAATTATAAACATTAGTCT+CGG | 0.584869 | 3.4:-98787464 | None:intergenic |
| TTTATCACCTCATCGGGTCA+AGG | 0.591799 | 3.4:+98787633 | MS.gene014331:CDS |
| AATTCTCTGTGTTCAGTTAG+GGG | 0.603312 | 3.4:+98787812 | MS.gene014331:CDS |
| AAGACATAACCATTGAACTA+GGG | 0.603476 | 3.4:+98787425 | MS.gene014331:CDS |
| CCAGAGCAAGCCATCATCAG+TGG | 0.606100 | 3.4:-98787295 | None:intergenic |
| AGATAACTTCCAGGCAGCGT+TGG | 0.612319 | 3.4:+98787323 | MS.gene014331:CDS |
| TACATATCCTTGACCCGATG+AGG | 0.618531 | 3.4:-98787640 | None:intergenic |
| AGGAAATCATGCAGAGCCAG+AGG | 0.631315 | 3.4:+98787537 | MS.gene014331:CDS |
| ACCATTGAACTAGGGCAACA+CGG | 0.634091 | 3.4:+98787433 | MS.gene014331:CDS |
| TACATTCAGAGTCCTGACAT+AGG | 0.642781 | 3.4:+98787661 | MS.gene014331:CDS |
| ATAGTAGTAGTTTACCTGCG+AGG | 0.718032 | 3.4:-98785988 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATGAAAATAGTTTAA+CGG | - | chr3.4:98786648-98786667 | None:intergenic | 10.0% |
| !! | CTGTAATATAACATTTATAT+AGG | - | chr3.4:98786295-98786314 | None:intergenic | 15.0% |
| !! | TCTATAAAAAAAAACACTAA+AGG | - | chr3.4:98787010-98787029 | None:intergenic | 15.0% |
| !!! | AAAAACTAGTTTAATACAAA+AGG | - | chr3.4:98787730-98787749 | None:intergenic | 15.0% |
| !!! | AAAACTAGTTTAATACAAAA+GGG | - | chr3.4:98787729-98787748 | None:intergenic | 15.0% |
| !!! | TTTAATTCTCTGTTTTTTTA+AGG | - | chr3.4:98787088-98787107 | None:intergenic | 15.0% |
| !! | AAAAACACTAAAGGTTTAAT+TGG | - | chr3.4:98787001-98787020 | None:intergenic | 20.0% |
| !! | ATATAGGCAAATTTGTATAA+GGG | - | chr3.4:98786279-98786298 | None:intergenic | 20.0% |
| !! | TATATAGGCAAATTTGTATA+AGG | - | chr3.4:98786280-98786299 | None:intergenic | 20.0% |
| !!! | AAAACATTCATTTTTGTAAG+AGG | + | chr3.4:98786553-98786572 | MS.gene014331:intron | 20.0% |
| !!! | AATAATGTACGATGATTTTT+CGG | - | chr3.4:98786952-98786971 | None:intergenic | 20.0% |
| !!! | GAACAGAAAAATTGATTTTT+TGG | - | chr3.4:98786875-98786894 | None:intergenic | 20.0% |
| !!! | TTTTTATAGGTGAATATTAG+TGG | + | chr3.4:98787121-98787140 | MS.gene014331:intron | 20.0% |
| ! | ACTAATGGAAACAACTTATT+TGG | - | chr3.4:98786738-98786757 | None:intergenic | 25.0% |
| ! | AGAACTCACAAAATTAAATG+TGG | - | chr3.4:98786509-98786528 | None:intergenic | 25.0% |
| ! | CCTATAAAAAAAAACACTCA+AGG | - | chr3.4:98787111-98787130 | None:intergenic | 25.0% |
| ! | TTAAGATTAATACCTATGTC+AGG | - | chr3.4:98787676-98787695 | None:intergenic | 25.0% |
| ! | TTCAAATAAGTCTATCCAAA+CGG | + | chr3.4:98786799-98786818 | MS.gene014331:intron | 25.0% |
| !! | AGAAAGAGAATACATGATTT+TGG | + | chr3.4:98786228-98786247 | MS.gene014331:intron | 25.0% |
| !! | CCAATTATAAACATTAGTCT+CGG | - | chr3.4:98787467-98787486 | None:intergenic | 25.0% |
| !!! | ACACTTTTTGGAATTACTAA+TGG | - | chr3.4:98786753-98786772 | None:intergenic | 25.0% |
| !!! | CCTTGAGTGTTTTTTTTTAT+AGG | + | chr3.4:98787108-98787127 | MS.gene014331:intron | 25.0% |
| AAAGACATAACCATTGAACT+AGG | + | chr3.4:98787424-98787443 | MS.gene014331:CDS | 30.0% | |
| AAATTAAATGTGGAGAAGTG+AGG | - | chr3.4:98786499-98786518 | None:intergenic | 30.0% | |
| AAGACATAACCATTGAACTA+GGG | + | chr3.4:98787425-98787444 | MS.gene014331:CDS | 30.0% | |
| CCGAGACTAATGTTTATAAT+TGG | + | chr3.4:98787464-98787483 | MS.gene014331:CDS | 30.0% | |
| GACATTGCATAATTTATGCA+GGG | + | chr3.4:98786452-98786471 | MS.gene014331:intron | 30.0% | |
| GTCAATGTTATTGAATGTTC+AGG | + | chr3.4:98787244-98787263 | MS.gene014331:intron | 30.0% | |
| TATGTCTTTGATCTTCTGTT+TGG | - | chr3.4:98787413-98787432 | None:intergenic | 30.0% | |
| TCAAATAAGTCTATCCAAAC+GGG | + | chr3.4:98786800-98786819 | MS.gene014331:intron | 30.0% | |
| TCTATGAATACTCACTAACT+AGG | + | chr3.4:98787698-98787717 | MS.gene014331:intron | 30.0% | |
| ! | TAAACACTTGTGACACTTTT+TGG | - | chr3.4:98786765-98786784 | None:intergenic | 30.0% |
| !! | AATTTCATTTTTGTTGTCCC+TGG | + | chr3.4:98786402-98786421 | MS.gene014331:intron | 30.0% |
| !! | TCACATGTTTTGTTCTCTTT+TGG | - | chr3.4:98787583-98787602 | None:intergenic | 30.0% |
| !!! | ATTGATTTTTTGGAATCGAG+AGG | - | chr3.4:98786865-98786884 | None:intergenic | 30.0% |
| AATTCTCTGTGTTCAGTTAG+GGG | + | chr3.4:98787812-98787831 | MS.gene014331:CDS | 35.0% | |
| ACAATTCTCTGTGTTCAGTT+AGG | + | chr3.4:98787810-98787829 | MS.gene014331:CDS | 35.0% | |
| AGAGAGCTTATGGAAATAAG+CGG | + | chr3.4:98786694-98786713 | MS.gene014331:intron | 35.0% | |
| AGTGTCACAAGTGTTTATGT+CGG | + | chr3.4:98786768-98786787 | MS.gene014331:intron | 35.0% | |
| ATTGTCAATCGTATCGAACA+TGG | - | chr3.4:98787795-98787814 | None:intergenic | 35.0% | |
| CAATTCTCTGTGTTCAGTTA+GGG | + | chr3.4:98787811-98787830 | MS.gene014331:CDS | 35.0% | |
| CACATGAAGAAATTCGTGTA+AGG | + | chr3.4:98787766-98787785 | MS.gene014331:CDS | 35.0% | |
| CTAGTCCTAAATAAGTAGCT+CGG | - | chr3.4:98787203-98787222 | None:intergenic | 35.0% | |
| CTTATTTCCATAAGCTCTCT+AGG | - | chr3.4:98786694-98786713 | None:intergenic | 35.0% | |
| GGACATTGCATAATTTATGC+AGG | + | chr3.4:98786451-98786470 | MS.gene014331:intron | 35.0% | |
| TCTTTGATCTTCTGTTTGGT+GGG | - | chr3.4:98787409-98787428 | None:intergenic | 35.0% | |
| TTGAGAGTTTATCACCTCAT+CGG | + | chr3.4:98787626-98787645 | MS.gene014331:CDS | 35.0% | |
| ! | AGTGAGTGCAGGATATATTT+TGG | - | chr3.4:98786827-98786846 | None:intergenic | 35.0% |
| ! | TCAAGTATTTGAAGCTGGAT+AGG | - | chr3.4:98787358-98787377 | None:intergenic | 35.0% |
| !!! | TTTTTTGTCTAGTAGCCTAG+TGG | - | chr3.4:98786534-98786553 | None:intergenic | 35.0% |
| AAATTGGTTACAGTGAGTGC+AGG | - | chr3.4:98786838-98786857 | None:intergenic | 40.0% | |
| AAGCAATCATCTGTTACTGC+AGG | + | chr3.4:98787517-98787536 | MS.gene014331:CDS | 40.0% | |
| ACCAACCGAGCTACTTATTT+AGG | + | chr3.4:98787195-98787214 | MS.gene014331:intron | 40.0% | |
| ATAGTAGTAGTTTACCTGCG+AGG | - | chr3.4:98785991-98786010 | None:intergenic | 40.0% | |
| CTCAACAAGCTGATCAGAAA+TGG | - | chr3.4:98785939-98785958 | None:intergenic | 40.0% | |
| GACAAGCGCTAAATCAATCA+AGG | - | chr3.4:98787227-98787246 | None:intergenic | 40.0% | |
| GGAATCGAGAGGACAAAAAT+TGG | - | chr3.4:98786854-98786873 | None:intergenic | 40.0% | |
| GTCTTTGATCTTCTGTTTGG+TGG | - | chr3.4:98787410-98787429 | None:intergenic | 40.0% | |
| TACATTCAGAGTCCTGACAT+AGG | + | chr3.4:98787661-98787680 | MS.gene014331:CDS | 40.0% | |
| TAGCTATCCTAGAGAGCTTA+TGG | + | chr3.4:98786684-98786703 | MS.gene014331:intron | 40.0% | |
| TCCTAAATAAGTAGCTCGGT+TGG | - | chr3.4:98787199-98787218 | None:intergenic | 40.0% | |
| TGAGAGTTTATCACCTCATC+GGG | + | chr3.4:98787627-98787646 | MS.gene014331:CDS | 40.0% | |
| ! | CGTATTTTCGATGAAGGCAA+TGG | + | chr3.4:98787379-98787398 | MS.gene014331:CDS | 40.0% |
| ! | CTTGAGCGTATTTTCGATGA+AGG | + | chr3.4:98787373-98787392 | MS.gene014331:CDS | 40.0% |
| ! | TACGCTCAAGTATTTGAAGC+TGG | - | chr3.4:98787363-98787382 | None:intergenic | 40.0% |
| !! | GGATATATTTTGGACCCGTT+TGG | - | chr3.4:98786817-98786836 | None:intergenic | 40.0% |
| !! | TTTTGTGAGTTCTAGCCACT+AGG | + | chr3.4:98786516-98786535 | MS.gene014331:intron | 40.0% |
| ACCATTGAACTAGGGCAACA+CGG | + | chr3.4:98787433-98787452 | MS.gene014331:CDS | 45.0% | |
| CTGGACACAAGATAACTTCC+AGG | + | chr3.4:98787314-98787333 | MS.gene014331:CDS | 45.0% | |
| GAATGTTCAGGACTGAGACT+TGG | + | chr3.4:98787256-98787275 | MS.gene014331:intron | 45.0% | |
| GTACTGTGATCCACTGATGA+TGG | + | chr3.4:98787285-98787304 | MS.gene014331:CDS | 45.0% | |
| TACATATCCTTGACCCGATG+AGG | - | chr3.4:98787643-98787662 | None:intergenic | 45.0% | |
| TTGAACGAGCTCTTCTGTTC+TGG | - | chr3.4:98787492-98787511 | None:intergenic | 45.0% | |
| TTTATCACCTCATCGGGTCA+AGG | + | chr3.4:98787633-98787652 | MS.gene014331:CDS | 45.0% | |
| ! | ATTTGAAGCTGGATAGGCGT+TGG | - | chr3.4:98787352-98787371 | None:intergenic | 45.0% |
| ACCGTGTTGCCCTAGTTCAA+TGG | - | chr3.4:98787437-98787456 | None:intergenic | 50.0% | |
| AGATAACTTCCAGGCAGCGT+TGG | + | chr3.4:98787323-98787342 | MS.gene014331:CDS | 50.0% | |
| AGGAAATCATGCAGAGCCAG+AGG | + | chr3.4:98787537-98787556 | MS.gene014331:CDS | 50.0% | |
| CTAGTACCTTCAGTGTCCCT+TGG | + | chr3.4:98787169-98787188 | MS.gene014331:intron | 50.0% | |
| TCAACTTCTGTGTCTGCCTC+TGG | - | chr3.4:98787556-98787575 | None:intergenic | 50.0% | |
| ! | ATGTGGAGAAGTGAGGTGTC+CGG | - | chr3.4:98786492-98786511 | None:intergenic | 50.0% |
| !! | CAAGGGACACTGAAGGTACT+AGG | - | chr3.4:98787171-98787190 | None:intergenic | 50.0% |
| AGCTTAGCTCAGTTGGCGGT+TGG | + | chr3.4:98786425-98786444 | MS.gene014331:intron | 55.0% | |
| CCAGAGCAAGCCATCATCAG+TGG | - | chr3.4:98787298-98787317 | None:intergenic | 55.0% | |
| CTGGAGCTTAGCTCAGTTGG+CGG | + | chr3.4:98786421-98786440 | MS.gene014331:intron | 55.0% | |
| GCCAACTGAGCTAAGCTCCA+GGG | - | chr3.4:98786422-98786441 | None:intergenic | 55.0% | |
| TCCCTGGAGCTTAGCTCAGT+TGG | + | chr3.4:98786418-98786437 | MS.gene014331:intron | 55.0% | |
| ! | TGTGGAGAAGTGAGGTGTCC+GGG | - | chr3.4:98786491-98786510 | None:intergenic | 55.0% |
| !! | CCACTGATGATGGCTTGCTC+TGG | + | chr3.4:98787295-98787314 | MS.gene014331:CDS | 55.0% |
| !! | TAGCTCGGTTGGTGAGCCAA+GGG | - | chr3.4:98787188-98787207 | None:intergenic | 55.0% |
| ACCACTCAACACGACCTCGC+AGG | + | chr3.4:98785974-98785993 | MS.gene014331:CDS | 60.0% | |
| ACCTGCGAGGTCGTGTTGAG+TGG | - | chr3.4:98785978-98785997 | None:intergenic | 60.0% | |
| AGCTCAGTTGGCGGTTGGCA+GGG | + | chr3.4:98786430-98786449 | MS.gene014331:intron | 60.0% | |
| CAGGGCTGAGTTTCGAACCC+CGG | + | chr3.4:98786470-98786489 | MS.gene014331:intron | 60.0% | |
| CGCCAACTGAGCTAAGCTCC+AGG | - | chr3.4:98786423-98786442 | None:intergenic | 60.0% | |
| GGTGAGCCAAGGGACACTGA+AGG | - | chr3.4:98787178-98787197 | None:intergenic | 60.0% | |
| TAGCTCAGTTGGCGGTTGGC+AGG | + | chr3.4:98786429-98786448 | MS.gene014331:intron | 60.0% | |
| ! | GTGGAGAAGTGAGGTGTCCG+GGG | - | chr3.4:98786490-98786509 | None:intergenic | 60.0% |
| !! | GTAGCTCGGTTGGTGAGCCA+AGG | - | chr3.4:98787189-98787208 | None:intergenic | 60.0% |
| CGTTGGAGTCCAACGCTGCC+TGG | - | chr3.4:98787335-98787354 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 98785899 | 98787848 | 98785899 | ID=MS.gene014331 |
| chr3.4 | mRNA | 98785899 | 98787848 | 98785899 | ID=MS.gene014331.t1;Parent=MS.gene014331 |
| chr3.4 | exon | 98785899 | 98785995 | 98785899 | ID=MS.gene014331.t1.exon1;Parent=MS.gene014331.t1 |
| chr3.4 | CDS | 98785899 | 98785995 | 98785899 | ID=cds.MS.gene014331.t1;Parent=MS.gene014331.t1 |
| chr3.4 | exon | 98787266 | 98787682 | 98787266 | ID=MS.gene014331.t1.exon2;Parent=MS.gene014331.t1 |
| chr3.4 | CDS | 98787266 | 98787682 | 98787266 | ID=cds.MS.gene014331.t1;Parent=MS.gene014331.t1 |
| chr3.4 | exon | 98787745 | 98787848 | 98787745 | ID=MS.gene014331.t1.exon3;Parent=MS.gene014331.t1 |
| chr3.4 | CDS | 98787745 | 98787848 | 98787745 | ID=cds.MS.gene014331.t1;Parent=MS.gene014331.t1 |
| Gene Sequence |
| Protein sequence |
