Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014371.t1 | XP_024634993.1 | 92.4 | 331 | 16 | 2 | 1 | 323 | 1 | 330 | 4.00E-172 | 614 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014371.t1 | Q9SGS2 | 58.8 | 308 | 111 | 5 | 18 | 314 | 25 | 327 | 4.1e-93 | 342.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014371.t1 | A0A072V3N9 | 91.8 | 331 | 15 | 2 | 1 | 323 | 1 | 327 | 5.4e-171 | 609.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014371.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014371.t1 | MTR_3g114920 | 91.843 | 331 | 15 | 2 | 1 | 323 | 1 | 327 | 0.0 | 604 |
| MS.gene014371.t1 | MTR_1g116180 | 44.343 | 327 | 134 | 9 | 20 | 313 | 24 | 335 | 2.26e-82 | 255 |
| MS.gene014371.t1 | MTR_1g116180 | 46.179 | 301 | 122 | 8 | 20 | 295 | 24 | 309 | 6.70e-81 | 249 |
| MS.gene014371.t1 | MTR_7g005970 | 43.125 | 320 | 156 | 8 | 20 | 321 | 25 | 336 | 9.45e-75 | 236 |
| MS.gene014371.t1 | MTR_3g009890 | 42.471 | 259 | 112 | 8 | 20 | 272 | 29 | 256 | 5.34e-50 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014371.t1 | AT1G76110 | 61.039 | 308 | 104 | 6 | 18 | 314 | 25 | 327 | 5.14e-121 | 351 |
| MS.gene014371.t1 | AT1G04880 | 39.628 | 323 | 154 | 7 | 23 | 313 | 21 | 334 | 4.54e-71 | 227 |
| MS.gene014371.t1 | AT3G13350 | 38.776 | 294 | 149 | 5 | 25 | 309 | 34 | 305 | 8.40e-57 | 187 |
| MS.gene014371.t1 | AT1G55650 | 35.548 | 301 | 136 | 9 | 27 | 313 | 30 | 286 | 8.34e-50 | 169 |
Find 75 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAGTTAGTTACATGAATT+TGG | 0.209705 | 3.2:+90873146 | None:intergenic |
| CCAGGACTGACCAATCATTT+TGG | 0.213880 | 3.2:+90871721 | None:intergenic |
| GCACTATAATTTACCATCTT+AGG | 0.243959 | 3.2:+90872563 | None:intergenic |
| AGACGATGATTCATGTCTTT+TGG | 0.244218 | 3.2:-90872050 | MS.gene014371:CDS |
| TTAACGACCCTACTCTCTTT+TGG | 0.246597 | 3.2:-90873203 | MS.gene014371:CDS |
| TTATATAGTGTCAGTGAAAT+TGG | 0.257424 | 3.2:-90871993 | MS.gene014371:CDS |
| GTAAACTCCCTTTCTCTGTT+TGG | 0.269610 | 3.2:+90871743 | None:intergenic |
| AAGTTATAGCCACTCCTATT+TGG | 0.286925 | 3.2:+90871806 | None:intergenic |
| TTCAGAGCTGAGACTATTCC+AGG | 0.293074 | 3.2:+90871703 | None:intergenic |
| AGTTCACTTCTTCAAAGTTC+AGG | 0.296129 | 3.2:-90872768 | MS.gene014371:CDS |
| TAAACTCCCTTTCTCTGTTT+GGG | 0.301975 | 3.2:+90871744 | None:intergenic |
| CCAACTATCCAAAGCCAAAT+AGG | 0.317522 | 3.2:-90871820 | MS.gene014371:CDS |
| TATTGAACAATAGCTAATTC+AGG | 0.323525 | 3.2:+90872590 | None:intergenic |
| CTATTTGGCTTTGGATAGTT+GGG | 0.336021 | 3.2:+90871821 | None:intergenic |
| CCTATTTGGCTTTGGATAGT+TGG | 0.350904 | 3.2:+90871820 | None:intergenic |
| TAGCCACTCCTATTTGGCTT+TGG | 0.371071 | 3.2:+90871812 | None:intergenic |
| TTGGGAAAAGGAACAATAGA+AGG | 0.380812 | 3.2:-90872031 | MS.gene014371:CDS |
| AGCGGTTTCTCCTTCATCAT+TGG | 0.385924 | 3.2:-90871930 | MS.gene014371:CDS |
| AGGTTGTTGCAGAGAAGAAA+TGG | 0.399101 | 3.2:-90872889 | MS.gene014371:CDS |
| TCCTACCCAAGCGATGAGTT+TGG | 0.411390 | 3.2:+90871870 | None:intergenic |
| GAGAAGAAATGGAGAGAAGT+AGG | 0.422027 | 3.2:-90872878 | MS.gene014371:CDS |
| TGTTCAATATTCACCTAAGA+TGG | 0.427917 | 3.2:-90872576 | MS.gene014371:CDS |
| AGGGAGTTTACCAAAATGAT+TGG | 0.428453 | 3.2:-90871731 | MS.gene014371:CDS |
| AACTCTACCCAAACAGAGAA+AGG | 0.437948 | 3.2:-90871751 | MS.gene014371:CDS |
| TATATAGTGTCAGTGAAATT+GGG | 0.442454 | 3.2:-90871992 | MS.gene014371:CDS |
| CCAAAATGATTGGTCAGTCC+TGG | 0.444792 | 3.2:-90871721 | MS.gene014371:CDS |
| GTTCACTTCTTCAAAGTTCA+GGG | 0.455272 | 3.2:-90872767 | MS.gene014371:CDS |
| CAATCACCAAACTCATCGCT+TGG | 0.458935 | 3.2:-90871876 | MS.gene014371:CDS |
| TTGCAAAGGATTCCTGTGAT+TGG | 0.459725 | 3.2:-90873047 | MS.gene014371:intron |
| TGGGTTCAGAAGTTCTCAAA+GGG | 0.460026 | 3.2:-90871973 | MS.gene014371:CDS |
| TCGTCGCTTTCACTTTCTCA+TGG | 0.469995 | 3.2:-90873172 | MS.gene014371:CDS |
| TTTGCCTTCGTCGTCGTCGC+CGG | 0.479624 | 3.2:+90873263 | None:intergenic |
| AAGGTACAAAAGAGAGTTGA+CGG | 0.489040 | 3.2:-90871489 | MS.gene014371:CDS |
| TCTCAGCTCTGAAGAAAGAA+TGG | 0.490573 | 3.2:-90871693 | MS.gene014371:intron |
| CGATGAGTTTGGTGATTGAA+TGG | 0.504304 | 3.2:+90871881 | None:intergenic |
| GATTCCTGTGATTGGTGGTA+AGG | 0.506284 | 3.2:-90873039 | MS.gene014371:CDS |
| ATAGAAGGAAAATTTGATTG+TGG | 0.518312 | 3.2:-90872016 | MS.gene014371:CDS |
| AAACTCATCGCTTGGGTAGG+AGG | 0.523054 | 3.2:-90871868 | MS.gene014371:CDS |
| TTCTCTACGTGGAAGTTACA+AGG | 0.523185 | 3.2:-90873001 | MS.gene014371:CDS |
| AGAGTGTCCCAAAAGAGAGT+AGG | 0.527303 | 3.2:+90873195 | None:intergenic |
| GAGTGTCCCAAAAGAGAGTA+GGG | 0.533581 | 3.2:+90873196 | None:intergenic |
| AATCACCAAACTCATCGCTT+GGG | 0.544065 | 3.2:-90871875 | MS.gene014371:CDS |
| AGTGCTGAATCTCATGATGA+AGG | 0.550456 | 3.2:-90872545 | MS.gene014371:intron |
| GTCGTTGTGAGAGGCGAGTG+GGG | 0.551529 | 3.2:+90873230 | None:intergenic |
| CGAAATAGTAATACCTGGTG+AGG | 0.553336 | 3.2:+90872730 | None:intergenic |
| TTGGTGATTGAATGGCTCAA+TGG | 0.554617 | 3.2:+90871889 | None:intergenic |
| AAAAGAAGCGCTTGTAGTGG+TGG | 0.559395 | 3.2:+90872835 | None:intergenic |
| CGTCGTTGTGAGAGGCGAGT+GGG | 0.567003 | 3.2:+90873229 | None:intergenic |
| CAAAGGATTCCTGTGATTGG+TGG | 0.567225 | 3.2:-90873044 | MS.gene014371:intron |
| GAAATAGTAATACCTGGTGA+GGG | 0.568622 | 3.2:+90872731 | None:intergenic |
| ACTCTACCCAAACAGAGAAA+GGG | 0.569820 | 3.2:-90871750 | MS.gene014371:CDS |
| TTGGGTTCAGAAGTTCTCAA+AGG | 0.586901 | 3.2:-90871974 | MS.gene014371:CDS |
| GGAGTACAAACAGAAAATGA+AGG | 0.592924 | 3.2:-90871468 | MS.gene014371:CDS |
| GCTAATTCAGGTTTCCACGA+TGG | 0.602804 | 3.2:+90872602 | None:intergenic |
| AAGGAGAAGCGGTTATGAGA+AGG | 0.604277 | 3.2:-90872982 | MS.gene014371:intron |
| AGCTCCTTACCACCAATCAC+AGG | 0.612482 | 3.2:+90873035 | None:intergenic |
| GTTAACGACGTCGTTGTGAG+AGG | 0.614603 | 3.2:+90873221 | None:intergenic |
| TCGTTGTGAGAGGCGAGTGG+GGG | 0.615838 | 3.2:+90873231 | None:intergenic |
| ACGTCGTTGTGAGAGGCGAG+TGG | 0.618608 | 3.2:+90873228 | None:intergenic |
| TTGTGCAGACAGAAGAACTC+GGG | 0.623939 | 3.2:-90871445 | MS.gene014371:CDS |
| TACAAAAGAAGCGCTTGTAG+TGG | 0.625201 | 3.2:+90872832 | None:intergenic |
| TGTTGTGTAACCAATGATGA+AGG | 0.625666 | 3.2:+90871920 | None:intergenic |
| ATTGGCTTAAGGGACAAAGA+AGG | 0.629162 | 3.2:-90871508 | MS.gene014371:intron |
| AACTCCGGCGACGACGACGA+AGG | 0.636321 | 3.2:-90873267 | MS.gene014371:CDS |
| TATCCAAAGCCAAATAGGAG+TGG | 0.645627 | 3.2:-90871815 | MS.gene014371:CDS |
| TGATTTGCACGTTCTCTACG+TGG | 0.652993 | 3.2:-90873012 | MS.gene014371:CDS |
| AAATAGTAATACCTGGTGAG+GGG | 0.654247 | 3.2:+90872732 | None:intergenic |
| GCGGTGAGAAGCAAGAACTC+CGG | 0.655187 | 3.2:-90873282 | MS.gene014371:CDS |
| ACCAAACTCATCGCTTGGGT+AGG | 0.660160 | 3.2:-90871871 | MS.gene014371:CDS |
| GTGGAAGTTACAAGGAGAAG+CGG | 0.661449 | 3.2:-90872993 | MS.gene014371:CDS |
| AATAGTAATACCTGGTGAGG+GGG | 0.665808 | 3.2:+90872733 | None:intergenic |
| GTTGTGCAGACAGAAGAACT+CGG | 0.678933 | 3.2:-90871446 | MS.gene014371:CDS |
| TTTCTGGTAACAGTCCATCG+TGG | 0.712333 | 3.2:-90872616 | MS.gene014371:CDS |
| GGGTTCAGAAGTTCTCAAAG+GGG | 0.716935 | 3.2:-90871972 | MS.gene014371:CDS |
| TCATTGGTTACACAACACAA+CGG | 0.736779 | 3.2:-90871914 | MS.gene014371:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAATAATTCAAATTTC+AGG | - | chr3.2:90871821-90871840 | MS.gene014371:CDS | 10.0% |
| !! | AAATGAAATCACATTTATAA+TGG | + | chr3.2:90871664-90871683 | None:intergenic | 15.0% |
| !! | TTGAAAAAATAAATGAAGAA+AGG | + | chr3.2:90871617-90871636 | None:intergenic | 15.0% |
| !! | ACAGTTTAATCTTATAATGA+AGG | + | chr3.2:90871785-90871804 | None:intergenic | 20.0% |
| !! | AGAAAGAATGGTAATTAAAA+AGG | - | chr3.2:90873049-90873068 | MS.gene014371:intron | 20.0% |
| !! | AGATATTGAAATTACAGAAT+TGG | - | chr3.2:90872270-90872289 | MS.gene014371:intron | 20.0% |
| !! | CAGTTTAATCTTATAATGAA+GGG | + | chr3.2:90871784-90871803 | None:intergenic | 20.0% |
| !! | TAATGGTTATTTATCAAGTT+AGG | - | chr3.2:90872213-90872232 | MS.gene014371:intron | 20.0% |
| ! | ACTAGTTAGTTACATGAATT+TGG | + | chr3.2:90871587-90871606 | None:intergenic | 25.0% |
| ! | ATAGAAGGAAAATTTGATTG+TGG | - | chr3.2:90872714-90872733 | MS.gene014371:intron | 25.0% |
| ! | GAAAGTAGTTTATGATGTTA+AGG | - | chr3.2:90872464-90872483 | MS.gene014371:intron | 25.0% |
| ! | TATATAGTGTCAGTGAAATT+GGG | - | chr3.2:90872738-90872757 | MS.gene014371:intron | 25.0% |
| ! | TATTGAACAATAGCTAATTC+AGG | + | chr3.2:90872143-90872162 | None:intergenic | 25.0% |
| ! | TCATGATGAAGGTAATTTAA+TGG | - | chr3.2:90872196-90872215 | MS.gene014371:intron | 25.0% |
| ! | TTATATAGTGTCAGTGAAAT+TGG | - | chr3.2:90872737-90872756 | MS.gene014371:intron | 25.0% |
| ! | TTGGTAAATCTGCAATATTA+GGG | + | chr3.2:90873199-90873218 | None:intergenic | 25.0% |
| ! | TTTGGTAAATCTGCAATATT+AGG | + | chr3.2:90873200-90873219 | None:intergenic | 25.0% |
| !! | AATGTGATTTCATTTTGCAA+AGG | - | chr3.2:90871669-90871688 | MS.gene014371:intron | 25.0% |
| !! | CACATTTATAATGGTACTTT+TGG | + | chr3.2:90871655-90871674 | None:intergenic | 25.0% |
| !!! | ATTGTTGTTTATCTAGAATC+TGG | - | chr3.2:90873115-90873134 | MS.gene014371:intron | 25.0% |
| !!! | TCTGCATATTTAATTTGTCA+TGG | - | chr3.2:90872607-90872626 | MS.gene014371:CDS | 25.0% |
| !!! | TTATAATGGTACTTTTGGTT+TGG | + | chr3.2:90871650-90871669 | None:intergenic | 25.0% |
| AATAGCGAAATAGTAATACC+TGG | + | chr3.2:90872008-90872027 | None:intergenic | 30.0% | |
| ACTCATTTGTGATTCTACTA+AGG | - | chr3.2:90872394-90872413 | MS.gene014371:intron | 30.0% | |
| CAACAATGTAAAGACCAATT+AGG | + | chr3.2:90873102-90873121 | None:intergenic | 30.0% | |
| GAAATTACAGAATTGGAATC+AGG | - | chr3.2:90872277-90872296 | MS.gene014371:intron | 30.0% | |
| GAAGAGAAGAAAAAGAAAGT+GGG | - | chr3.2:90872884-90872903 | MS.gene014371:CDS | 30.0% | |
| GCACTATAATTTACCATCTT+AGG | + | chr3.2:90872170-90872189 | None:intergenic | 30.0% | |
| TGTTCAATATTCACCTAAGA+TGG | - | chr3.2:90872154-90872173 | MS.gene014371:intron | 30.0% | |
| TTGCAGATTTACCAAAACAT+TGG | - | chr3.2:90873204-90873223 | MS.gene014371:CDS | 30.0% | |
| ! | TATATTGCAGATGCATTTTC+TGG | - | chr3.2:90872098-90872117 | MS.gene014371:intron | 30.0% |
| ! | TATCTAGAATCTGGTTATCA+GGG | - | chr3.2:90873124-90873143 | MS.gene014371:intron | 30.0% |
| ! | TTATCTAGAATCTGGTTATC+AGG | - | chr3.2:90873123-90873142 | MS.gene014371:intron | 30.0% |
| !! | TTACCAAAACATTGGCTTAA+GGG | - | chr3.2:90873212-90873231 | MS.gene014371:CDS | 30.0% |
| !! | TTTACCAAAACATTGGCTTA+AGG | - | chr3.2:90873211-90873230 | MS.gene014371:CDS | 30.0% |
| !!! | GTGTGTTGTTTTATCCTAAT+TGG | - | chr3.2:90873085-90873104 | MS.gene014371:intron | 30.0% |
| AAATAGTAATACCTGGTGAG+GGG | + | chr3.2:90872001-90872020 | None:intergenic | 35.0% | |
| AAGGTACAAAAGAGAGTTGA+CGG | - | chr3.2:90873241-90873260 | MS.gene014371:CDS | 35.0% | |
| AAGTTATAGCCACTCCTATT+TGG | + | chr3.2:90872927-90872946 | None:intergenic | 35.0% | |
| AGGGAGTTTACCAAAATGAT+TGG | - | chr3.2:90872999-90873018 | MS.gene014371:CDS | 35.0% | |
| AGTTCACTTCTTCAAAGTTC+AGG | - | chr3.2:90871962-90871981 | MS.gene014371:CDS | 35.0% | |
| GAAATAGTAATACCTGGTGA+GGG | + | chr3.2:90872002-90872021 | None:intergenic | 35.0% | |
| GGAAGAGAAGAAAAAGAAAG+TGG | - | chr3.2:90872883-90872902 | MS.gene014371:CDS | 35.0% | |
| GGAGTACAAACAGAAAATGA+AGG | - | chr3.2:90873262-90873281 | MS.gene014371:CDS | 35.0% | |
| GTTCACTTCTTCAAAGTTCA+GGG | - | chr3.2:90871963-90871982 | MS.gene014371:CDS | 35.0% | |
| TAAACTCCCTTTCTCTGTTT+GGG | + | chr3.2:90872989-90873008 | None:intergenic | 35.0% | |
| TGTTGTGTAACCAATGATGA+AGG | + | chr3.2:90872813-90872832 | None:intergenic | 35.0% | |
| TTGGGAAAAGGAACAATAGA+AGG | - | chr3.2:90872699-90872718 | MS.gene014371:intron | 35.0% | |
| ! | AGACGATGATTCATGTCTTT+TGG | - | chr3.2:90872680-90872699 | MS.gene014371:intron | 35.0% |
| ! | GACGATGATTCATGTCTTTT+GGG | - | chr3.2:90872681-90872700 | MS.gene014371:intron | 35.0% |
| ! | TAGAAGTAGAAGCATGATTG+TGG | - | chr3.2:90872524-90872543 | MS.gene014371:intron | 35.0% |
| ! | TCATTGGTTACACAACACAA+CGG | - | chr3.2:90872816-90872835 | MS.gene014371:CDS | 35.0% |
| !! | CTATTTGGCTTTGGATAGTT+GGG | + | chr3.2:90872912-90872931 | None:intergenic | 35.0% |
| !! | GATTCATGTCTTTTGGGAAA+AGG | - | chr3.2:90872687-90872706 | MS.gene014371:intron | 35.0% |
| AACTCTACCCAAACAGAGAA+AGG | - | chr3.2:90872979-90872998 | MS.gene014371:intron | 40.0% | |
| AATAGTAATACCTGGTGAGG+GGG | + | chr3.2:90872000-90872019 | None:intergenic | 40.0% | |
| AATCACCAAACTCATCGCTT+GGG | - | chr3.2:90872855-90872874 | MS.gene014371:CDS | 40.0% | |
| ACTCTACCCAAACAGAGAAA+GGG | - | chr3.2:90872980-90872999 | MS.gene014371:intron | 40.0% | |
| AGGTTGTTGCAGAGAAGAAA+TGG | - | chr3.2:90871841-90871860 | MS.gene014371:CDS | 40.0% | |
| CCAACTATCCAAAGCCAAAT+AGG | - | chr3.2:90872910-90872929 | MS.gene014371:intron | 40.0% | |
| CGAAATAGTAATACCTGGTG+AGG | + | chr3.2:90872003-90872022 | None:intergenic | 40.0% | |
| GAGAAGAAATGGAGAGAAGT+AGG | - | chr3.2:90871852-90871871 | MS.gene014371:CDS | 40.0% | |
| GCTTTACCATCCAGAAAAAG+CGG | - | chr3.2:90872782-90872801 | MS.gene014371:CDS | 40.0% | |
| GTAAACTCCCTTTCTCTGTT+TGG | + | chr3.2:90872990-90873009 | None:intergenic | 40.0% | |
| TATCCAAAGCCAAATAGGAG+TGG | - | chr3.2:90872915-90872934 | MS.gene014371:intron | 40.0% | |
| TGGGTTCAGAAGTTCTCAAA+GGG | - | chr3.2:90872757-90872776 | MS.gene014371:CDS | 40.0% | |
| TTCTCTACGTGGAAGTTACA+AGG | - | chr3.2:90871729-90871748 | MS.gene014371:CDS | 40.0% | |
| TTGCAAAGGATTCCTGTGAT+TGG | - | chr3.2:90871683-90871702 | MS.gene014371:intron | 40.0% | |
| TTGGGTTCAGAAGTTCTCAA+AGG | - | chr3.2:90872756-90872775 | MS.gene014371:CDS | 40.0% | |
| ! | AGTGCTGAATCTCATGATGA+AGG | - | chr3.2:90872185-90872204 | MS.gene014371:intron | 40.0% |
| ! | ATGATTGTGGACTCAAGTTG+AGG | - | chr3.2:90872537-90872556 | MS.gene014371:intron | 40.0% |
| ! | ATTGGCTTAAGGGACAAAGA+AGG | - | chr3.2:90873222-90873241 | MS.gene014371:CDS | 40.0% |
| ! | CGATGAGTTTGGTGATTGAA+TGG | + | chr3.2:90872852-90872871 | None:intergenic | 40.0% |
| ! | TAACGACCCTACTCTCTTTT+GGG | - | chr3.2:90871528-90871547 | MS.gene014371:intron | 40.0% |
| ! | TGTCCCTTAAGCCAATGTTT+TGG | + | chr3.2:90873218-90873237 | None:intergenic | 40.0% |
| ! | TTAACGACCCTACTCTCTTT+TGG | - | chr3.2:90871527-90871546 | MS.gene014371:intron | 40.0% |
| ! | TTGGTGATTGAATGGCTCAA+TGG | + | chr3.2:90872844-90872863 | None:intergenic | 40.0% |
| !! | CCTATTTGGCTTTGGATAGT+TGG | + | chr3.2:90872913-90872932 | None:intergenic | 40.0% |
| !! | TACAAAAGAAGCGCTTGTAG+TGG | + | chr3.2:90871901-90871920 | None:intergenic | 40.0% |
| !! | TCTCAGCTCTGAAGAAAGAA+TGG | - | chr3.2:90873037-90873056 | MS.gene014371:CDS | 40.0% |
| !! | TGGACTCAAGTTGAGGATTT+AGG | - | chr3.2:90872544-90872563 | MS.gene014371:intron | 40.0% |
| AAGGAGAAGCGGTTATGAGA+AGG | - | chr3.2:90871748-90871767 | MS.gene014371:CDS | 45.0% | |
| AGCGGTTTCTCCTTCATCAT+TGG | - | chr3.2:90872800-90872819 | MS.gene014371:CDS | 45.0% | |
| CAAAGGATTCCTGTGATTGG+TGG | - | chr3.2:90871686-90871705 | MS.gene014371:intron | 45.0% | |
| CAATCACCAAACTCATCGCT+TGG | - | chr3.2:90872854-90872873 | MS.gene014371:CDS | 45.0% | |
| GAGTGTCCCAAAAGAGAGTA+GGG | + | chr3.2:90871537-90871556 | None:intergenic | 45.0% | |
| GGGTTCAGAAGTTCTCAAAG+GGG | - | chr3.2:90872758-90872777 | MS.gene014371:CDS | 45.0% | |
| GTGGAAGTTACAAGGAGAAG+CGG | - | chr3.2:90871737-90871756 | MS.gene014371:CDS | 45.0% | |
| GTTGTGCAGACAGAAGAACT+CGG | - | chr3.2:90873284-90873303 | MS.gene014371:CDS | 45.0% | |
| TTCAGAGCTGAGACTATTCC+AGG | + | chr3.2:90873030-90873049 | None:intergenic | 45.0% | |
| TTGTGCAGACAGAAGAACTC+GGG | - | chr3.2:90873285-90873304 | MS.gene014371:CDS | 45.0% | |
| ! | AGAGTGTCCCAAAAGAGAGT+AGG | + | chr3.2:90871538-90871557 | None:intergenic | 45.0% |
| ! | CCAAAATGATTGGTCAGTCC+TGG | - | chr3.2:90873009-90873028 | MS.gene014371:CDS | 45.0% |
| ! | CCAGGACTGACCAATCATTT+TGG | + | chr3.2:90873012-90873031 | None:intergenic | 45.0% |
| ! | GATTCCTGTGATTGGTGGTA+AGG | - | chr3.2:90871691-90871710 | MS.gene014371:intron | 45.0% |
| ! | GCTAATTCAGGTTTCCACGA+TGG | + | chr3.2:90872131-90872150 | None:intergenic | 45.0% |
| ! | TAGCCACTCCTATTTGGCTT+TGG | + | chr3.2:90872921-90872940 | None:intergenic | 45.0% |
| ! | TCGTCGCTTTCACTTTCTCA+TGG | - | chr3.2:90871558-90871577 | MS.gene014371:intron | 45.0% |
| ! | TGATTTGCACGTTCTCTACG+TGG | - | chr3.2:90871718-90871737 | MS.gene014371:CDS | 45.0% |
| ! | TTTCTGGTAACAGTCCATCG+TGG | - | chr3.2:90872114-90872133 | MS.gene014371:intron | 45.0% |
| !! | AAAAGAAGCGCTTGTAGTGG+TGG | + | chr3.2:90871898-90871917 | None:intergenic | 45.0% |
| !!! | GAAGGAGAAACCGCTTTTTC+TGG | + | chr3.2:90872795-90872814 | None:intergenic | 45.0% |
| !!! | GAGAAACCGCTTTTTCTGGA+TGG | + | chr3.2:90872791-90872810 | None:intergenic | 45.0% |
| !! | AAATAATTGAATTTAAATTA+AGG | - | chr3.2:90872241-90872260 | MS.gene014371:intron | 5.0% |
| !! | AATAATTGAATTTAAATTAA+GGG | - | chr3.2:90872242-90872261 | MS.gene014371:intron | 5.0% |
| AAACTCATCGCTTGGGTAGG+AGG | - | chr3.2:90872862-90872881 | MS.gene014371:CDS | 50.0% | |
| ACCAAACTCATCGCTTGGGT+AGG | - | chr3.2:90872859-90872878 | MS.gene014371:CDS | 50.0% | |
| AGCTCCTTACCACCAATCAC+AGG | + | chr3.2:90871698-90871717 | None:intergenic | 50.0% | |
| GTTAACGACGTCGTTGTGAG+AGG | + | chr3.2:90871512-90871531 | None:intergenic | 50.0% | |
| TCCTACCCAAGCGATGAGTT+TGG | + | chr3.2:90872863-90872882 | None:intergenic | 50.0% | |
| CCTATTTACACCCCCTCACC+AGG | - | chr3.2:90871987-90872006 | MS.gene014371:CDS | 55.0% | |
| GCGGTGAGAAGCAAGAACTC+CGG | - | chr3.2:90871448-90871467 | MS.gene014371:CDS | 55.0% | |
| ! | CCTGGTGAGGGGGTGTAAAT+AGG | + | chr3.2:90871990-90872009 | None:intergenic | 55.0% |
| ACGTCGTTGTGAGAGGCGAG+TGG | + | chr3.2:90871505-90871524 | None:intergenic | 60.0% | |
| CGTCGTTGTGAGAGGCGAGT+GGG | + | chr3.2:90871504-90871523 | None:intergenic | 60.0% | |
| GTCGTTGTGAGAGGCGAGTG+GGG | + | chr3.2:90871503-90871522 | None:intergenic | 60.0% | |
| TCGTTGTGAGAGGCGAGTGG+GGG | + | chr3.2:90871502-90871521 | None:intergenic | 60.0% | |
| TTTGCCTTCGTCGTCGTCGC+CGG | + | chr3.2:90871470-90871489 | None:intergenic | 60.0% | |
| AACTCCGGCGACGACGACGA+AGG | - | chr3.2:90871463-90871482 | MS.gene014371:CDS | 65.0% | |
| TGTGAGAGGCGAGTGGGGGA+GGG | + | chr3.2:90871498-90871517 | None:intergenic | 65.0% | |
| TTGTGAGAGGCGAGTGGGGG+AGG | + | chr3.2:90871499-90871518 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 90871436 | 90873316 | 90871436 | ID=MS.gene014371 |
| chr3.2 | mRNA | 90871436 | 90873316 | 90871436 | ID=MS.gene014371.t1;Parent=MS.gene014371 |
| chr3.2 | exon | 90873159 | 90873316 | 90873159 | ID=MS.gene014371.t1.exon1;Parent=MS.gene014371.t1 |
| chr3.2 | CDS | 90873159 | 90873316 | 90873159 | ID=cds.MS.gene014371.t1;Parent=MS.gene014371.t1 |
| chr3.2 | exon | 90872983 | 90873061 | 90872983 | ID=MS.gene014371.t1.exon2;Parent=MS.gene014371.t1 |
| chr3.2 | CDS | 90872983 | 90873061 | 90872983 | ID=cds.MS.gene014371.t1;Parent=MS.gene014371.t1 |
| chr3.2 | exon | 90872744 | 90872909 | 90872744 | ID=MS.gene014371.t1.exon3;Parent=MS.gene014371.t1 |
| chr3.2 | CDS | 90872744 | 90872909 | 90872744 | ID=cds.MS.gene014371.t1;Parent=MS.gene014371.t1 |
| chr3.2 | exon | 90872546 | 90872644 | 90872546 | ID=MS.gene014371.t1.exon4;Parent=MS.gene014371.t1 |
| chr3.2 | CDS | 90872546 | 90872644 | 90872546 | ID=cds.MS.gene014371.t1;Parent=MS.gene014371.t1 |
| chr3.2 | exon | 90871694 | 90872079 | 90871694 | ID=MS.gene014371.t1.exon5;Parent=MS.gene014371.t1 |
| chr3.2 | CDS | 90871694 | 90872079 | 90871694 | ID=cds.MS.gene014371.t1;Parent=MS.gene014371.t1 |
| chr3.2 | exon | 90871436 | 90871519 | 90871436 | ID=MS.gene014371.t1.exon6;Parent=MS.gene014371.t1 |
| chr3.2 | CDS | 90871436 | 90871519 | 90871436 | ID=cds.MS.gene014371.t1;Parent=MS.gene014371.t1 |
| Gene Sequence |
| Protein sequence |
