Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014408.t1 | RHN71126.1 | 95.9 | 654 | 26 | 1 | 1 | 654 | 1 | 653 | 4.90E-286 | 993.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014408.t1 | P54103 | 37.4 | 625 | 288 | 17 | 62 | 653 | 55 | 609 | 9.7e-57 | 223.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014408.t1 | A0A396IZE3 | 95.9 | 654 | 26 | 1 | 1 | 654 | 1 | 653 | 3.5e-286 | 993.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014408.t1 | TF | MYB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014408.t1 | MTR_3g113680 | 97.401 | 654 | 16 | 1 | 1 | 654 | 1 | 653 | 0.0 | 1306 |
| MS.gene014408.t1 | MTR_7g109430 | 96.942 | 654 | 19 | 1 | 1 | 654 | 1 | 653 | 0.0 | 1305 |
| MS.gene014408.t1 | MTR_3g114060 | 81.720 | 279 | 43 | 2 | 378 | 654 | 62 | 334 | 1.33e-148 | 434 |
| MS.gene014408.t1 | MTR_8g093080 | 29.439 | 214 | 95 | 3 | 443 | 653 | 140 | 300 | 1.18e-20 | 93.6 |
| MS.gene014408.t1 | MTR_4g109510 | 30.380 | 237 | 113 | 9 | 98 | 297 | 9 | 230 | 3.07e-17 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014408.t1 | AT3G11450 | 63.788 | 660 | 211 | 11 | 4 | 654 | 7 | 647 | 0.0 | 732 |
| MS.gene014408.t1 | AT5G06110 | 59.342 | 669 | 240 | 10 | 2 | 651 | 5 | 660 | 0.0 | 711 |
| MS.gene014408.t1 | AT5G06110 | 59.342 | 669 | 240 | 10 | 2 | 651 | 5 | 660 | 0.0 | 711 |
| MS.gene014408.t1 | AT5G45420 | 31.959 | 194 | 87 | 3 | 459 | 652 | 158 | 306 | 7.78e-19 | 88.2 |
| MS.gene014408.t1 | AT5G45420 | 31.959 | 194 | 87 | 3 | 459 | 652 | 158 | 306 | 7.78e-19 | 88.2 |
| MS.gene014408.t1 | AT5G45420 | 31.959 | 194 | 87 | 3 | 459 | 652 | 158 | 306 | 7.78e-19 | 88.2 |
| MS.gene014408.t1 | AT1G74250 | 29.167 | 240 | 117 | 6 | 98 | 297 | 12 | 238 | 5.27e-16 | 82.0 |
Find 132 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTTCTTTGCCATATATT+TGG | 0.137476 | 3.2:+90460058 | None:intergenic |
| TTTCTCCTCTTCAGCAATTC+TGG | 0.180978 | 3.2:+90460019 | None:intergenic |
| GCAAGATCATTATGCATTAT+TGG | 0.181634 | 3.2:-90460711 | MS.gene014408:CDS |
| TCCTTTCTTCTCAGTATTCT+AGG | 0.194363 | 3.2:+90460116 | None:intergenic |
| CCATGATGAAGGAAAATTTC+AGG | 0.207011 | 3.2:-90459074 | MS.gene014408:CDS |
| CCATCTCCTTGAAGTTCCTT+TGG | 0.238251 | 3.2:+90459566 | None:intergenic |
| CTTTGGCTGTATCGGGCTTC+TGG | 0.244533 | 3.2:+90459469 | None:intergenic |
| CATCTCTGGTTAGCTTCCTT+TGG | 0.256785 | 3.2:+90459156 | None:intergenic |
| ATCTAATTGTCTTCCGGTTA+AGG | 0.285179 | 3.2:-90460921 | MS.gene014408:CDS |
| CAAGATCATTATGCATTATT+GGG | 0.286954 | 3.2:-90460710 | MS.gene014408:CDS |
| AGCTGAGAAGAAAAGGAAAA+AGG | 0.327832 | 3.2:-90460084 | MS.gene014408:CDS |
| ATTGTCAACTAGAGAAGAAT+TGG | 0.337451 | 3.2:-90459391 | MS.gene014408:CDS |
| GAGAAAAGTAATCAACAAAA+TGG | 0.344685 | 3.2:-90459702 | MS.gene014408:CDS |
| CATCTCCTTGAAGTTCCTTT+GGG | 0.350239 | 3.2:+90459567 | None:intergenic |
| CTGAATCCCGAGATCATAAA+AGG | 0.353541 | 3.2:-90460235 | MS.gene014408:CDS |
| ATCTCTGGTTAGCTTCCTTT+GGG | 0.356444 | 3.2:+90459157 | None:intergenic |
| CGAGTAGCTGCAGCTGTACC+TGG | 0.359607 | 3.2:-90459129 | MS.gene014408:CDS |
| TACTCACAAGAGCTTGTAGA+TGG | 0.365954 | 3.2:-90460962 | MS.gene014408:CDS |
| TGTTTCATCTAATTGTCTTC+CGG | 0.373042 | 3.2:-90460927 | MS.gene014408:CDS |
| TCTAATTGTCTTCCGGTTAA+GGG | 0.380280 | 3.2:-90460920 | MS.gene014408:CDS |
| TCATATTTCAACCCCTTAAC+CGG | 0.383373 | 3.2:+90460908 | None:intergenic |
| AATGGCTATGTCAAGGCTAA+TGG | 0.383665 | 3.2:-90459684 | MS.gene014408:CDS |
| CTTCTGTTGCAAAGCAGCTT+CGG | 0.407096 | 3.2:+90459965 | None:intergenic |
| CAGCTACTCGTTCCCATCTC+TGG | 0.408539 | 3.2:+90459142 | None:intergenic |
| AGGCAAAAGCTGAGAAGAAA+AGG | 0.413153 | 3.2:-90460091 | MS.gene014408:CDS |
| TTGTTGATAATGCTTATAAG+AGG | 0.415278 | 3.2:-90460142 | MS.gene014408:CDS |
| AGCAAGAGCAAGAAGAAATC+TGG | 0.416590 | 3.2:-90460752 | MS.gene014408:CDS |
| ATTCTTCTCTAGTTGACAAT+GGG | 0.419152 | 3.2:+90459394 | None:intergenic |
| TCATCACCTAGAGATGGAAT+TGG | 0.419175 | 3.2:+90460359 | None:intergenic |
| CCTTTCTTCTCAGTATTCTA+GGG | 0.419637 | 3.2:+90460117 | None:intergenic |
| GAAGAATGTGGTTGAAGATA+AGG | 0.419917 | 3.2:-90460807 | MS.gene014408:CDS |
| CTGCTTGTTGCTGTCGGTAC+CGG | 0.420172 | 3.2:+90459270 | None:intergenic |
| TCAAAAGCTTTGGCTGTATC+GGG | 0.425452 | 3.2:+90459462 | None:intergenic |
| CAAGACTTCTACAAGGTGTT+TGG | 0.427058 | 3.2:-90460422 | MS.gene014408:CDS |
| GCTGCTGCACTTAAACTTCT+CGG | 0.428929 | 3.2:-90460863 | MS.gene014408:CDS |
| TGATGATAAGTCTTCAATAA+AGG | 0.429949 | 3.2:-90460342 | MS.gene014408:CDS |
| AACTTCCTTGAGGTTTCATC+CGG | 0.430850 | 3.2:-90460630 | MS.gene014408:CDS |
| TTTGGTATTCCTTTAAAAGC+TGG | 0.431430 | 3.2:-90460298 | MS.gene014408:CDS |
| GAGGTTTCATCCGGACAAAC+AGG | 0.431529 | 3.2:-90460621 | MS.gene014408:CDS |
| GAGATTGAGCTATTGAGAAA+AGG | 0.438019 | 3.2:-90459603 | MS.gene014408:CDS |
| ATCAAAAGCTTTGGCTGTAT+CGG | 0.439665 | 3.2:+90459461 | None:intergenic |
| CAAATATATGGCAAAGAAGT+TGG | 0.442593 | 3.2:-90460057 | MS.gene014408:CDS |
| AAGAAATGTATCAAAAGCTT+TGG | 0.451091 | 3.2:+90459452 | None:intergenic |
| ATTTGATATCGAACAATTGA+GGG | 0.453929 | 3.2:-90459814 | MS.gene014408:CDS |
| CATTTGATATCGAACAATTG+AGG | 0.454216 | 3.2:-90459815 | MS.gene014408:CDS |
| CCAAAGGAACTTCAAGGAGA+TGG | 0.456430 | 3.2:-90459566 | MS.gene014408:CDS |
| CTTCGCAGCTTCAGTTTGCT+CGG | 0.456856 | 3.2:+90460583 | None:intergenic |
| CCAACACTGCATAAGCCTCT+TGG | 0.462398 | 3.2:+90460519 | None:intergenic |
| GATGCAATTGATTGTGCTGC+AGG | 0.463598 | 3.2:+90459417 | None:intergenic |
| ACAGCAGCAGCCTGTTTGTC+CGG | 0.463811 | 3.2:+90460611 | None:intergenic |
| CAAGATCAAACTCATCAGCC+TGG | 0.467623 | 3.2:+90460264 | None:intergenic |
| AGAGGCGTGGTCTGCAGTGC+AGG | 0.469414 | 3.2:-90459211 | MS.gene014408:CDS |
| CTGGTTAGCTTCCTTTGGGA+AGG | 0.471179 | 3.2:+90459161 | None:intergenic |
| GTCGTCGTCATCGTCGGTGT+TGG | 0.475726 | 3.2:+90459306 | None:intergenic |
| CAAAGGAAGCTAACCAGAGA+TGG | 0.482494 | 3.2:-90459155 | MS.gene014408:CDS |
| ATTGTTGTCGTCGTCATCGT+CGG | 0.494599 | 3.2:+90459300 | None:intergenic |
| TTGATACATTTCTTGAGAAG+AGG | 0.495249 | 3.2:-90459443 | MS.gene014408:CDS |
| AGCTGCTTTGCAACAGAAGA+AGG | 0.496514 | 3.2:-90459961 | MS.gene014408:CDS |
| CACTGGATCACGGTCTTCCC+AGG | 0.497559 | 3.2:+90459111 | None:intergenic |
| TCAATCTCTTCTTTAGTCCA+AGG | 0.508908 | 3.2:+90459618 | None:intergenic |
| AGCAGGCTACACAGAGAAGA+AGG | 0.509420 | 3.2:-90459646 | MS.gene014408:CDS |
| CAGAGAAGAAGGAGAAACCT+TGG | 0.509658 | 3.2:-90459635 | MS.gene014408:CDS |
| AAGATCAAACTCATCAGCCT+GGG | 0.518267 | 3.2:+90460265 | None:intergenic |
| AATTCTTCTCTAGTTGACAA+TGG | 0.519138 | 3.2:+90459393 | None:intergenic |
| CCCTAGAATACTGAGAAGAA+AGG | 0.521673 | 3.2:-90460117 | MS.gene014408:CDS |
| CCGTAGCAAGATATCTAAGA+TGG | 0.529700 | 3.2:+90460681 | None:intergenic |
| CAAAGGAACTTCAAGGAGAT+GGG | 0.529793 | 3.2:-90459565 | MS.gene014408:CDS |
| GTTGCTGTCGGTACCGGTGT+TGG | 0.530623 | 3.2:+90459276 | None:intergenic |
| GTTTCAGAATACATTGGCAC+TGG | 0.531471 | 3.2:-90459537 | MS.gene014408:CDS |
| AATCAACCAATTCCATCTCT+AGG | 0.533477 | 3.2:-90460365 | MS.gene014408:CDS |
| GCATGAAAAGAGTGACCAGC+CGG | 0.535447 | 3.2:+90460884 | None:intergenic |
| CTAATTGTCTTCCGGTTAAG+GGG | 0.537188 | 3.2:-90460919 | MS.gene014408:CDS |
| GGAAGCAGTAGTTCTCTAGC+AGG | 0.540499 | 3.2:-90459663 | MS.gene014408:CDS |
| AGCGGCCAGAATTGCTGAAG+AGG | 0.545593 | 3.2:-90460024 | MS.gene014408:CDS |
| ATCATAAAAGGTGGATGGAA+AGG | 0.545814 | 3.2:-90460223 | MS.gene014408:CDS |
| TATGGCAAAGAAGTTGGAGG+AGG | 0.545831 | 3.2:-90460051 | MS.gene014408:CDS |
| AGTTTCCCAAAGGAACTTCA+AGG | 0.546208 | 3.2:-90459572 | MS.gene014408:CDS |
| CGAGCAAACTGAAGCTGCGA+AGG | 0.546255 | 3.2:-90460582 | MS.gene014408:CDS |
| CCGAGATCATAAAAGGTGGA+TGG | 0.548047 | 3.2:-90460228 | MS.gene014408:CDS |
| TTGATGCTGCTTGTTGCTGT+CGG | 0.552607 | 3.2:+90459264 | None:intergenic |
| CCAAGAGGCTTATGCAGTGT+TGG | 0.555210 | 3.2:-90460519 | MS.gene014408:CDS |
| GCAAACTGAAGCTGCGAAGG+AGG | 0.560752 | 3.2:-90460579 | MS.gene014408:CDS |
| AATACTGAGAAGAAAGGAAG+AGG | 0.562192 | 3.2:-90460111 | MS.gene014408:CDS |
| CGTCCATTCCTCATAAAAGC+AGG | 0.567375 | 3.2:+90460398 | None:intergenic |
| TGGCTGTATCGGGCTTCTGG+AGG | 0.570452 | 3.2:+90459472 | None:intergenic |
| GACTTATCATCACCTAGAGA+TGG | 0.570557 | 3.2:+90460353 | None:intergenic |
| TATGAGGAATGGACGGTGGT+CGG | 0.570845 | 3.2:-90460390 | MS.gene014408:CDS |
| CAACTAGAGAAGAATTGGAA+GGG | 0.572911 | 3.2:-90459386 | MS.gene014408:CDS |
| AACACCTTGTAGAAGTCTTG+TGG | 0.578361 | 3.2:+90460425 | None:intergenic |
| ATCGGGCTTCTGGAGGAGAA+CGG | 0.578804 | 3.2:+90459479 | None:intergenic |
| TGTTGATAATGCTTATAAGA+GGG | 0.580470 | 3.2:-90460141 | MS.gene014408:CDS |
| GAGGTTGTTTCAGAATACAT+TGG | 0.584103 | 3.2:-90459543 | MS.gene014408:CDS |
| GGAGAAACAACGAAAAGCAG+AGG | 0.585652 | 3.2:-90460003 | MS.gene014408:CDS |
| GAAGTTGGAGGAGGAAGAAG+CGG | 0.588565 | 3.2:-90460042 | MS.gene014408:CDS |
| ATATATGGCAAAGAAGTTGG+AGG | 0.590878 | 3.2:-90460054 | MS.gene014408:CDS |
| AAAGGAAGCTAACCAGAGAT+GGG | 0.594916 | 3.2:-90459154 | MS.gene014408:CDS |
| AGCAACAAGCAGCATCAACT+CGG | 0.597280 | 3.2:-90459259 | MS.gene014408:CDS |
| CCATCTTAGATATCTTGCTA+CGG | 0.601973 | 3.2:-90460681 | MS.gene014408:CDS |
| AGCAAGAAGAAATCTGGTGA+CGG | 0.602442 | 3.2:-90460746 | MS.gene014408:CDS |
| GAGTAGCTGCAGCTGTACCT+GGG | 0.604010 | 3.2:-90459128 | MS.gene014408:CDS |
| AGTATGTGTTGTGACAAGAT+AGG | 0.605889 | 3.2:+90459876 | None:intergenic |
| TCAACAAAATGGCTATGTCA+AGG | 0.605950 | 3.2:-90459691 | MS.gene014408:CDS |
| TAAGGGGTTGAAATATGACC+CGG | 0.605968 | 3.2:-90460903 | MS.gene014408:CDS |
| TCAACTAGAGAAGAATTGGA+AGG | 0.608211 | 3.2:-90459387 | MS.gene014408:CDS |
| AACTAGAGAAGAATTGGAAG+GGG | 0.608691 | 3.2:-90459385 | MS.gene014408:CDS |
| ACAGAAGAAGGTGAAAGAGA+AGG | 0.608855 | 3.2:-90459949 | MS.gene014408:CDS |
| TCAAGGAGTTTCAGAACAAG+AGG | 0.609387 | 3.2:-90459229 | MS.gene014408:CDS |
| GCTATCATAAAACTTCCTTG+AGG | 0.611239 | 3.2:-90460640 | MS.gene014408:CDS |
| ACTCACAAGAGCTTGTAGAT+GGG | 0.613229 | 3.2:-90460961 | MS.gene014408:CDS |
| CATGAAAAGAGTGACCAGCC+GGG | 0.617908 | 3.2:+90460885 | None:intergenic |
| CTTGTGAGTAAGTAATAAGA+CGG | 0.621140 | 3.2:+90460975 | None:intergenic |
| GTCTTGTGGATCACAGTCAG+TGG | 0.627262 | 3.2:+90460439 | None:intergenic |
| GGAATACAAAAGTTTCCCAA+AGG | 0.628434 | 3.2:-90459582 | MS.gene014408:CDS |
| TCTTGTGGATCACAGTCAGT+GGG | 0.629359 | 3.2:+90460440 | None:intergenic |
| ATCAACTCGGAAGACTCTCA+AGG | 0.633952 | 3.2:-90459246 | MS.gene014408:CDS |
| AAGCTGGAGAGAGTTTCCCC+AGG | 0.640812 | 3.2:-90460282 | MS.gene014408:CDS |
| TTTGTCCGGATGAAACCTCA+AGG | 0.646808 | 3.2:+90460625 | None:intergenic |
| TTTGATATCGAACAATTGAG+GGG | 0.649974 | 3.2:-90459813 | MS.gene014408:CDS |
| GACGACAACAATTCCAACAC+CGG | 0.650077 | 3.2:-90459289 | MS.gene014408:CDS |
| TCTTAGATATCTTGCTACGG+AGG | 0.651757 | 3.2:-90460678 | MS.gene014408:CDS |
| TGATCCACAAGACTTCTACA+AGG | 0.666734 | 3.2:-90460429 | MS.gene014408:CDS |
| AGATCAAACTCATCAGCCTG+GGG | 0.670566 | 3.2:+90460266 | None:intergenic |
| GGTTTGTGTGAGAAAATCGA+AGG | 0.671097 | 3.2:-90459792 | MS.gene014408:CDS |
| GGGTTGAAATATGACCCGGC+TGG | 0.672506 | 3.2:-90460899 | MS.gene014408:CDS |
| TGAGAAAATCGAAGGCAAAG+AGG | 0.673494 | 3.2:-90459784 | MS.gene014408:CDS |
| AATCCCGAGATCATAAAAGG+TGG | 0.674327 | 3.2:-90460232 | MS.gene014408:CDS |
| TTCTTCTCTAGTTGACAATG+GGG | 0.676675 | 3.2:+90459395 | None:intergenic |
| GAGTTTCAGAACAAGAGGCG+TGG | 0.676797 | 3.2:-90459224 | MS.gene014408:CDS |
| TTGCTGCTGTAAGAATCAGA+AGG | 0.678587 | 3.2:+90460770 | None:intergenic |
| AAGCATTATCAACAAGAGTG+CGG | 0.686922 | 3.2:+90460150 | None:intergenic |
| AGGAACTTCAAGGAGATGGG+AGG | 0.689319 | 3.2:-90459562 | MS.gene014408:CDS |
| AGATGCTGATAAGAAGAATG+TGG | 0.708564 | 3.2:-90460819 | MS.gene014408:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCATAAATTCTTCTTTTTA+CGG | + | chr3.2:90459561-90459580 | None:intergenic | 15.0% |
| !! | CAATTAGATGAAACAAAAAT+AGG | + | chr3.2:90459116-90459135 | None:intergenic | 20.0% |
| !!! | TCATAAATTCTTCTTTTTAC+GGG | + | chr3.2:90459560-90459579 | None:intergenic | 20.0% |
| !!! | TGAAATAGATGTTCATTTTA+AGG | - | chr3.2:90459502-90459521 | MS.gene014408:CDS | 20.0% |
| !!! | TTGATAGTTTCTACAATTTT+TGG | - | chr3.2:90459732-90459751 | MS.gene014408:CDS | 20.0% |
| ! | AAGAAATGTATCAAAAGCTT+TGG | + | chr3.2:90460599-90460618 | None:intergenic | 25.0% |
| ! | ATTTGATATCGAACAATTGA+GGG | - | chr3.2:90460234-90460253 | MS.gene014408:CDS | 25.0% |
| ! | CAAGATCATTATGCATTATT+GGG | - | chr3.2:90459338-90459357 | MS.gene014408:CDS | 25.0% |
| ! | GAGAAAAGTAATCAACAAAA+TGG | - | chr3.2:90460346-90460365 | MS.gene014408:CDS | 25.0% |
| ! | TGATGATAAGTCTTCAATAA+AGG | - | chr3.2:90459706-90459725 | MS.gene014408:CDS | 25.0% |
| !!! | TGTTGATAATGCTTATAAGA+GGG | - | chr3.2:90459907-90459926 | MS.gene014408:CDS | 25.0% |
| !!! | TTGTTGATAATGCTTATAAG+AGG | - | chr3.2:90459906-90459925 | MS.gene014408:CDS | 25.0% |
| AATTCTTCTCTAGTTGACAA+TGG | + | chr3.2:90460658-90460677 | None:intergenic | 30.0% | |
| ATTCTTCTCTAGTTGACAAT+GGG | + | chr3.2:90460657-90460676 | None:intergenic | 30.0% | |
| ATTGTCAACTAGAGAAGAAT+TGG | - | chr3.2:90460657-90460676 | MS.gene014408:CDS | 30.0% | |
| CAAATATATGGCAAAGAAGT+TGG | - | chr3.2:90459991-90460010 | MS.gene014408:CDS | 30.0% | |
| CAACTTCTTTGCCATATATT+TGG | + | chr3.2:90459993-90460012 | None:intergenic | 30.0% | |
| CATTTGATATCGAACAATTG+AGG | - | chr3.2:90460233-90460252 | MS.gene014408:CDS | 30.0% | |
| CTTGTGAGTAAGTAATAAGA+CGG | + | chr3.2:90459076-90459095 | None:intergenic | 30.0% | |
| GAAAAAATTTGCCATGATGA+AGG | - | chr3.2:90460963-90460982 | MS.gene014408:CDS | 30.0% | |
| GAAAAAGGAGTCCAAATATA+TGG | - | chr3.2:90459979-90459998 | MS.gene014408:CDS | 30.0% | |
| GCAAGATCATTATGCATTAT+TGG | - | chr3.2:90459337-90459356 | MS.gene014408:CDS | 30.0% | |
| TGTTTCATCTAATTGTCTTC+CGG | - | chr3.2:90459121-90459140 | MS.gene014408:CDS | 30.0% | |
| TTGATACATTTCTTGAGAAG+AGG | - | chr3.2:90460605-90460624 | MS.gene014408:CDS | 30.0% | |
| TTTGATATCGAACAATTGAG+GGG | - | chr3.2:90460235-90460254 | MS.gene014408:CDS | 30.0% | |
| ! | TTTGGTATTCCTTTAAAAGC+TGG | - | chr3.2:90459750-90459769 | MS.gene014408:CDS | 30.0% |
| AACTAGAGAAGAATTGGAAG+GGG | - | chr3.2:90460663-90460682 | MS.gene014408:CDS | 35.0% | |
| AAGCATTATCAACAAGAGTG+CGG | + | chr3.2:90459901-90459920 | None:intergenic | 35.0% | |
| AATACTGAGAAGAAAGGAAG+AGG | - | chr3.2:90459937-90459956 | MS.gene014408:CDS | 35.0% | |
| AATCAACCAATTCCATCTCT+AGG | - | chr3.2:90459683-90459702 | MS.gene014408:CDS | 35.0% | |
| AGATGCTGATAAGAAGAATG+TGG | - | chr3.2:90459229-90459248 | MS.gene014408:CDS | 35.0% | |
| AGCTGAGAAGAAAAGGAAAA+AGG | - | chr3.2:90459964-90459983 | MS.gene014408:CDS | 35.0% | |
| AGTATGTGTTGTGACAAGAT+AGG | + | chr3.2:90460175-90460194 | None:intergenic | 35.0% | |
| ATATATGGCAAAGAAGTTGG+AGG | - | chr3.2:90459994-90460013 | MS.gene014408:CDS | 35.0% | |
| ATCATAAAAGGTGGATGGAA+AGG | - | chr3.2:90459825-90459844 | MS.gene014408:CDS | 35.0% | |
| ATCTAATTGTCTTCCGGTTA+AGG | - | chr3.2:90459127-90459146 | MS.gene014408:CDS | 35.0% | |
| CAAAACTGTCAGAAAAAGCT+AGG | - | chr3.2:90459855-90459874 | MS.gene014408:CDS | 35.0% | |
| CAACTAGAGAAGAATTGGAA+GGG | - | chr3.2:90460662-90460681 | MS.gene014408:CDS | 35.0% | |
| CCATCTTAGATATCTTGCTA+CGG | - | chr3.2:90459367-90459386 | MS.gene014408:CDS | 35.0% | |
| CCATGATGAAGGAAAATTTC+AGG | - | chr3.2:90460974-90460993 | MS.gene014408:CDS | 35.0% | |
| CCTTTCTTCTCAGTATTCTA+GGG | + | chr3.2:90459934-90459953 | None:intergenic | 35.0% | |
| GAAGAATGTGGTTGAAGATA+AGG | - | chr3.2:90459241-90459260 | MS.gene014408:CDS | 35.0% | |
| GAGATTGAGCTATTGAGAAA+AGG | - | chr3.2:90460445-90460464 | MS.gene014408:CDS | 35.0% | |
| GCTATCATAAAACTTCCTTG+AGG | - | chr3.2:90459408-90459427 | MS.gene014408:CDS | 35.0% | |
| GGAATACAAAAGTTTCCCAA+AGG | - | chr3.2:90460466-90460485 | MS.gene014408:CDS | 35.0% | |
| TCAACAAAATGGCTATGTCA+AGG | - | chr3.2:90460357-90460376 | MS.gene014408:CDS | 35.0% | |
| TCAACTAGAGAAGAATTGGA+AGG | - | chr3.2:90460661-90460680 | MS.gene014408:CDS | 35.0% | |
| TCAATCTCTTCTTTAGTCCA+AGG | + | chr3.2:90460433-90460452 | None:intergenic | 35.0% | |
| TCATATTTCAACCCCTTAAC+CGG | + | chr3.2:90459143-90459162 | None:intergenic | 35.0% | |
| TCCTTTCTTCTCAGTATTCT+AGG | + | chr3.2:90459935-90459954 | None:intergenic | 35.0% | |
| TCTAATTGTCTTCCGGTTAA+GGG | - | chr3.2:90459128-90459147 | MS.gene014408:CDS | 35.0% | |
| TTCTTCTCTAGTTGACAATG+GGG | + | chr3.2:90460656-90460675 | None:intergenic | 35.0% | |
| ! | AAACTCTCTCCAGCTTTTAA+AGG | + | chr3.2:90459762-90459781 | None:intergenic | 35.0% |
| ! | ATCAAAAGCTTTGGCTGTAT+CGG | + | chr3.2:90460590-90460609 | None:intergenic | 35.0% |
| ! | CCTGAAATTTTCCTTCATCA+TGG | + | chr3.2:90460977-90460996 | None:intergenic | 35.0% |
| ! | GAGGTTGTTTCAGAATACAT+TGG | - | chr3.2:90460505-90460524 | MS.gene014408:CDS | 35.0% |
| !! | AGCTTTAAAAACCTTCCCAA+AGG | - | chr3.2:90460876-90460895 | MS.gene014408:CDS | 35.0% |
| !! | CTATTTTCAGTTGTTGTTGC+TGG | + | chr3.2:90460697-90460716 | None:intergenic | 35.0% |
| !!! | TCATTTTAAGGCAATCCAAG+AGG | - | chr3.2:90459514-90459533 | MS.gene014408:CDS | 35.0% |
| !!! | TGGCAAATTTTTTCTTGCAC+TGG | + | chr3.2:90460957-90460976 | None:intergenic | 35.0% |
| !!! | TTTTTTCTTGCACTGGATCA+CGG | + | chr3.2:90460950-90460969 | None:intergenic | 35.0% |
| AAAGGAAGCTAACCAGAGAT+GGG | - | chr3.2:90460894-90460913 | MS.gene014408:CDS | 40.0% | |
| AACACCTTGTAGAAGTCTTG+TGG | + | chr3.2:90459626-90459645 | None:intergenic | 40.0% | |
| AACTTCCTTGAGGTTTCATC+CGG | - | chr3.2:90459418-90459437 | MS.gene014408:CDS | 40.0% | |
| AAGATCAAACTCATCAGCCT+GGG | + | chr3.2:90459786-90459805 | None:intergenic | 40.0% | |
| AATCCCGAGATCATAAAAGG+TGG | - | chr3.2:90459816-90459835 | MS.gene014408:CDS | 40.0% | |
| AATGGCTATGTCAAGGCTAA+TGG | - | chr3.2:90460364-90460383 | MS.gene014408:CDS | 40.0% | |
| ACAGAAGAAGGTGAAAGAGA+AGG | - | chr3.2:90460099-90460118 | MS.gene014408:CDS | 40.0% | |
| ACTCACAAGAGCTTGTAGAT+GGG | - | chr3.2:90459087-90459106 | MS.gene014408:CDS | 40.0% | |
| ACTGAGTTGCAAGAAAAACG+TGG | - | chr3.2:90460318-90460337 | MS.gene014408:CDS | 40.0% | |
| ACTGTCAGAAAAAGCTAGGA+AGG | - | chr3.2:90459859-90459878 | MS.gene014408:CDS | 40.0% | |
| AGAAGGAGAAAAAGCTCTTG+CGG | - | chr3.2:90460116-90460135 | MS.gene014408:CDS | 40.0% | |
| AGCAAGAAGAAATCTGGTGA+CGG | - | chr3.2:90459302-90459321 | MS.gene014408:CDS | 40.0% | |
| AGCAAGAGCAAGAAGAAATC+TGG | - | chr3.2:90459296-90459315 | MS.gene014408:CDS | 40.0% | |
| AGGCAAAAGCTGAGAAGAAA+AGG | - | chr3.2:90459957-90459976 | MS.gene014408:CDS | 40.0% | |
| AGTTTCCCAAAGGAACTTCA+AGG | - | chr3.2:90460476-90460495 | MS.gene014408:CDS | 40.0% | |
| CAAAGGAACTTCAAGGAGAT+GGG | - | chr3.2:90460483-90460502 | MS.gene014408:CDS | 40.0% | |
| CATCTCCTTGAAGTTCCTTT+GGG | + | chr3.2:90460484-90460503 | None:intergenic | 40.0% | |
| CCCTAGAATACTGAGAAGAA+AGG | - | chr3.2:90459931-90459950 | MS.gene014408:CDS | 40.0% | |
| CCGTAGCAAGATATCTAAGA+TGG | + | chr3.2:90459370-90459389 | None:intergenic | 40.0% | |
| CTAATTGTCTTCCGGTTAAG+GGG | - | chr3.2:90459129-90459148 | MS.gene014408:CDS | 40.0% | |
| CTGAATCCCGAGATCATAAA+AGG | - | chr3.2:90459813-90459832 | MS.gene014408:CDS | 40.0% | |
| GACTTATCATCACCTAGAGA+TGG | + | chr3.2:90459698-90459717 | None:intergenic | 40.0% | |
| GGTTTGTGTGAGAAAATCGA+AGG | - | chr3.2:90460256-90460275 | MS.gene014408:CDS | 40.0% | |
| GTTTCAGAATACATTGGCAC+TGG | - | chr3.2:90460511-90460530 | MS.gene014408:CDS | 40.0% | |
| TAAGGGGTTGAAATATGACC+CGG | - | chr3.2:90459145-90459164 | MS.gene014408:CDS | 40.0% | |
| TACTCACAAGAGCTTGTAGA+TGG | - | chr3.2:90459086-90459105 | MS.gene014408:CDS | 40.0% | |
| TCAAGGAGTTTCAGAACAAG+AGG | - | chr3.2:90460819-90460838 | MS.gene014408:CDS | 40.0% | |
| TCATCACCTAGAGATGGAAT+TGG | + | chr3.2:90459692-90459711 | None:intergenic | 40.0% | |
| TCTTAGATATCTTGCTACGG+AGG | - | chr3.2:90459370-90459389 | MS.gene014408:CDS | 40.0% | |
| TGAGAAAATCGAAGGCAAAG+AGG | - | chr3.2:90460264-90460283 | MS.gene014408:CDS | 40.0% | |
| TGATCCACAAGACTTCTACA+AGG | - | chr3.2:90459619-90459638 | MS.gene014408:CDS | 40.0% | |
| TTGCTGCTGTAAGAATCAGA+AGG | + | chr3.2:90459281-90459300 | None:intergenic | 40.0% | |
| TTTCTCCTCTTCAGCAATTC+TGG | + | chr3.2:90460032-90460051 | None:intergenic | 40.0% | |
| ! | CAAGACTTCTACAAGGTGTT+TGG | - | chr3.2:90459626-90459645 | MS.gene014408:CDS | 40.0% |
| ! | CATCCACCTTTTATGATCTC+GGG | + | chr3.2:90459822-90459841 | None:intergenic | 40.0% |
| ! | CCATCCACCTTTTATGATCT+CGG | + | chr3.2:90459823-90459842 | None:intergenic | 40.0% |
| ! | TCAAAAGCTTTGGCTGTATC+GGG | + | chr3.2:90460589-90460608 | None:intergenic | 40.0% |
| !! | ATCTCTGGTTAGCTTCCTTT+GGG | + | chr3.2:90460894-90460913 | None:intergenic | 40.0% |
| !! | CTGCTTTTATGAGGAATGGA+CGG | - | chr3.2:90459651-90459670 | MS.gene014408:CDS | 40.0% |
| !! | TGTTTGGTCCTGCTTTTATG+AGG | - | chr3.2:90459642-90459661 | MS.gene014408:CDS | 40.0% |
| AGATCAAACTCATCAGCCTG+GGG | + | chr3.2:90459785-90459804 | None:intergenic | 45.0% | |
| AGCAACAAGCAGCATCAACT+CGG | - | chr3.2:90460789-90460808 | MS.gene014408:CDS | 45.0% | |
| ATCAACTCGGAAGACTCTCA+AGG | - | chr3.2:90460802-90460821 | MS.gene014408:CDS | 45.0% | |
| ATTGTTGTCGTCGTCATCGT+CGG | + | chr3.2:90460751-90460770 | None:intergenic | 45.0% | |
| CAAAGGAAGCTAACCAGAGA+TGG | - | chr3.2:90460893-90460912 | MS.gene014408:CDS | 45.0% | |
| CAAGATCAAACTCATCAGCC+TGG | + | chr3.2:90459787-90459806 | None:intergenic | 45.0% | |
| CAGAGAAGAAGGAGAAACCT+TGG | - | chr3.2:90460413-90460432 | MS.gene014408:CDS | 45.0% | |
| CCAAAGGAACTTCAAGGAGA+TGG | - | chr3.2:90460482-90460501 | MS.gene014408:CDS | 45.0% | |
| CCATCTCCTTGAAGTTCCTT+TGG | + | chr3.2:90460485-90460504 | None:intergenic | 45.0% | |
| CCGAGATCATAAAAGGTGGA+TGG | - | chr3.2:90459820-90459839 | MS.gene014408:CDS | 45.0% | |
| CGTCCATTCCTCATAAAAGC+AGG | + | chr3.2:90459653-90459672 | None:intergenic | 45.0% | |
| CTTCTGTTGCAAAGCAGCTT+CGG | + | chr3.2:90460086-90460105 | None:intergenic | 45.0% | |
| GACGACAACAATTCCAACAC+CGG | - | chr3.2:90460759-90460778 | MS.gene014408:CDS | 45.0% | |
| GATGCAATTGATTGTGCTGC+AGG | + | chr3.2:90460634-90460653 | None:intergenic | 45.0% | |
| GCTGCTGCACTTAAACTTCT+CGG | - | chr3.2:90459185-90459204 | MS.gene014408:CDS | 45.0% | |
| GGAGAAACAACGAAAAGCAG+AGG | - | chr3.2:90460045-90460064 | MS.gene014408:CDS | 45.0% | |
| TATGGCAAAGAAGTTGGAGG+AGG | - | chr3.2:90459997-90460016 | MS.gene014408:CDS | 45.0% | |
| TCTTGTGGATCACAGTCAGT+GGG | + | chr3.2:90459611-90459630 | None:intergenic | 45.0% | |
| TTTGTCCGGATGAAACCTCA+AGG | + | chr3.2:90459426-90459445 | None:intergenic | 45.0% | |
| ! | AGCTGCTTTGCAACAGAAGA+AGG | - | chr3.2:90460087-90460106 | MS.gene014408:CDS | 45.0% |
| ! | CTTTTATGAGGAATGGACGG+TGG | - | chr3.2:90459654-90459673 | MS.gene014408:CDS | 45.0% |
| ! | TTGATGCTGCTTGTTGCTGT+CGG | + | chr3.2:90460787-90460806 | None:intergenic | 45.0% |
| !! | CATCTCTGGTTAGCTTCCTT+TGG | + | chr3.2:90460895-90460914 | None:intergenic | 45.0% |
| !! | GGTCCTGCTTTTATGAGGAA+TGG | - | chr3.2:90459647-90459666 | MS.gene014408:CDS | 45.0% |
| AGCAGGCTACACAGAGAAGA+AGG | - | chr3.2:90460402-90460421 | MS.gene014408:CDS | 50.0% | |
| AGGAACTTCAAGGAGATGGG+AGG | - | chr3.2:90460486-90460505 | MS.gene014408:CDS | 50.0% | |
| CATGAAAAGAGTGACCAGCC+GGG | + | chr3.2:90459166-90459185 | None:intergenic | 50.0% | |
| CCAACACTGCATAAGCCTCT+TGG | + | chr3.2:90459532-90459551 | None:intergenic | 50.0% | |
| CCAAGAGGCTTATGCAGTGT+TGG | - | chr3.2:90459529-90459548 | MS.gene014408:CDS | 50.0% | |
| GAAGTTGGAGGAGGAAGAAG+CGG | - | chr3.2:90460006-90460025 | MS.gene014408:CDS | 50.0% | |
| GAGGTTTCATCCGGACAAAC+AGG | - | chr3.2:90459427-90459446 | MS.gene014408:CDS | 50.0% | |
| GAGTTTCAGAACAAGAGGCG+TGG | - | chr3.2:90460824-90460843 | MS.gene014408:CDS | 50.0% | |
| GCATGAAAAGAGTGACCAGC+CGG | + | chr3.2:90459167-90459186 | None:intergenic | 50.0% | |
| GGAAGCAGTAGTTCTCTAGC+AGG | - | chr3.2:90460385-90460404 | MS.gene014408:CDS | 50.0% | |
| GGAGAAAAAGCTCTTGCGGA+AGG | - | chr3.2:90460120-90460139 | MS.gene014408:CDS | 50.0% | |
| GTCTTGTGGATCACAGTCAG+TGG | + | chr3.2:90459612-90459631 | None:intergenic | 50.0% | |
| TATGAGGAATGGACGGTGGT+CGG | - | chr3.2:90459658-90459677 | MS.gene014408:CDS | 50.0% | |
| ! | CTTCGCAGCTTCAGTTTGCT+CGG | + | chr3.2:90459468-90459487 | None:intergenic | 50.0% |
| !! | CTGGTTAGCTTCCTTTGGGA+AGG | + | chr3.2:90460890-90460909 | None:intergenic | 50.0% |
| AAGCTGGAGAGAGTTTCCCC+AGG | - | chr3.2:90459766-90459785 | MS.gene014408:CDS | 55.0% | |
| ACAGCAGCAGCCTGTTTGTC+CGG | + | chr3.2:90459440-90459459 | None:intergenic | 55.0% | |
| AGCGGCCAGAATTGCTGAAG+AGG | - | chr3.2:90460024-90460043 | MS.gene014408:CDS | 55.0% | |
| CAGCTACTCGTTCCCATCTC+TGG | + | chr3.2:90460909-90460928 | None:intergenic | 55.0% | |
| CGAGCAAACTGAAGCTGCGA+AGG | - | chr3.2:90459466-90459485 | MS.gene014408:CDS | 55.0% | |
| CTTTGGCTGTATCGGGCTTC+TGG | + | chr3.2:90460582-90460601 | None:intergenic | 55.0% | |
| GAGTAGCTGCAGCTGTACCT+GGG | - | chr3.2:90460920-90460939 | MS.gene014408:CDS | 55.0% | |
| GCAAACTGAAGCTGCGAAGG+AGG | - | chr3.2:90459469-90459488 | MS.gene014408:CDS | 55.0% | |
| GGGTTGAAATATGACCCGGC+TGG | - | chr3.2:90459149-90459168 | MS.gene014408:CDS | 55.0% | |
| ! | ATCGGGCTTCTGGAGGAGAA+CGG | + | chr3.2:90460572-90460591 | None:intergenic | 55.0% |
| ! | CTGCTTGTTGCTGTCGGTAC+CGG | + | chr3.2:90460781-90460800 | None:intergenic | 55.0% |
| CACTGGATCACGGTCTTCCC+AGG | + | chr3.2:90460940-90460959 | None:intergenic | 60.0% | |
| CGAGTAGCTGCAGCTGTACC+TGG | - | chr3.2:90460919-90460938 | MS.gene014408:CDS | 60.0% | |
| GTCGTCGTCATCGTCGGTGT+TGG | + | chr3.2:90460745-90460764 | None:intergenic | 60.0% | |
| TGGCTGTATCGGGCTTCTGG+AGG | + | chr3.2:90460579-90460598 | None:intergenic | 60.0% | |
| !! | GTTGCTGTCGGTACCGGTGT+TGG | + | chr3.2:90460775-90460794 | None:intergenic | 60.0% |
| ! | AGAGGCGTGGTCTGCAGTGC+AGG | - | chr3.2:90460837-90460856 | MS.gene014408:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 90459053 | 90461017 | 90459053 | ID=MS.gene014408 |
| chr3.2 | mRNA | 90459053 | 90461017 | 90459053 | ID=MS.gene014408.t1;Parent=MS.gene014408 |
| chr3.2 | exon | 90459053 | 90461017 | 90459053 | ID=MS.gene014408.t1.exon1;Parent=MS.gene014408.t1 |
| chr3.2 | CDS | 90459053 | 90461017 | 90459053 | ID=cds.MS.gene014408.t1;Parent=MS.gene014408.t1 |
| Gene Sequence |
| Protein sequence |
