AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014415

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014415.t1 MTR_7g446520 47.710 262 90 5 11 256 32 262 1.59e-63 216
MS.gene014415.t1 MTR_7g028855 52.000 200 91 4 12 207 65 263 8.89e-55 196
MS.gene014415.t1 MTR_7g446480 62.069 116 44 0 141 256 140 255 1.97e-42 157
MS.gene014415.t1 MTR_7g446510 61.207 116 45 0 141 256 155 270 1.52e-40 152
MS.gene014415.t1 MTR_1g070355 32.950 261 161 6 14 266 19 273 2.20e-34 139
MS.gene014415.t1 MTR_5g076070 32.068 237 155 4 36 270 26 258 1.57e-33 130
MS.gene014415.t1 MTR_6g022080 30.114 176 120 2 53 226 73 247 6.24e-24 102
MS.gene014415.t1 MTR_8g468460 51.579 95 45 1 268 362 12 105 1.70e-20 87.8
MS.gene014415.t1 MTR_0402s0040 31.111 180 113 3 65 240 28 200 3.73e-20 95.1
MS.gene014415.t1 MTR_6g051425 28.796 191 133 3 71 259 25 214 4.25e-19 90.1
MS.gene014415.t1 MTR_2g098880 31.677 161 100 5 11 167 10 164 6.15e-15 75.9
MS.gene014415.t1 MTR_2g098880 31.677 161 100 5 11 167 22 176 9.79e-15 75.5
MS.gene014415.t1 MTR_4g035820 29.333 225 139 8 69 286 81 292 3.90e-14 76.6
MS.gene014415.t1 MTR_6g053140 29.487 156 101 4 2 156 41 188 1.89e-13 70.9
MS.gene014415.t1 MTR_2g098920 37.500 104 61 2 68 171 85 184 2.60e-13 71.2
MS.gene014415.t1 MTR_1g008290 33.333 114 71 2 132 245 18 126 3.64e-13 68.2
MS.gene014415.t1 MTR_0645s0010 36.458 96 56 1 258 353 35 125 4.27e-13 67.4
MS.gene014415.t1 MTR_2g101460 35.246 122 78 1 54 175 46 166 7.00e-12 66.2
MS.gene014415.t1 MTR_8g467420 40.244 82 47 2 48 128 63 143 8.69e-12 64.7
MS.gene014415.t1 MTR_2g101460 35.246 122 78 1 54 175 36 156 1.28e-11 65.1
MS.gene014415.t1 MTR_5g015480 28.571 126 82 2 65 187 58 178 2.53e-11 65.5
MS.gene014415.t1 MTR_4g067290 33.594 128 80 3 68 194 81 204 5.70e-11 64.3
MS.gene014415.t1 MTR_4g067290 33.594 128 80 3 68 194 61 184 5.73e-11 63.9
MS.gene014415.t1 MTR_4g067290 33.594 128 80 3 68 194 121 244 8.60e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014415.t1 AT4G38180 35.326 184 116 3 67 249 77 258 5.68e-22 102
MS.gene014415.t1 AT4G38180 23.361 244 185 2 246 489 478 719 1.15e-14 78.6
MS.gene014415.t1 AT1G10240 32.402 179 112 5 69 241 54 229 5.35e-17 86.3
MS.gene014415.t1 AT1G10240 32.402 179 112 5 69 241 54 229 5.35e-17 86.3
MS.gene014415.t1 AT4G15090 28.400 250 161 9 260 501 468 707 6.61e-16 82.8
MS.gene014415.t1 AT4G15090 27.854 219 148 6 67 283 55 265 3.57e-14 77.0
MS.gene014415.t1 AT4G15090 28.400 250 161 9 260 501 468 707 6.61e-16 82.8
MS.gene014415.t1 AT4G15090 27.854 219 148 6 67 283 55 265 3.57e-14 77.0
MS.gene014415.t1 AT4G15090 28.400 250 161 9 260 501 468 707 6.61e-16 82.8
MS.gene014415.t1 AT4G15090 27.854 219 148 6 67 283 55 265 3.57e-14 77.0
MS.gene014415.t1 AT4G15090 28.400 250 161 9 260 501 468 707 6.61e-16 82.8
MS.gene014415.t1 AT4G15090 27.854 219 148 6 67 283 55 265 3.57e-14 77.0
MS.gene014415.t1 AT4G15090 28.400 250 161 9 260 501 468 707 6.61e-16 82.8
MS.gene014415.t1 AT4G15090 27.854 219 148 6 67 283 55 265 3.57e-14 77.0
MS.gene014415.t1 AT4G38170 27.044 159 115 1 246 404 243 400 8.99e-15 78.6
MS.gene014415.t1 AT5G18960 29.114 158 109 2 252 407 576 732 2.39e-14 77.8
MS.gene014415.t1 AT5G18960 29.114 158 109 2 252 407 576 732 2.39e-14 77.8
MS.gene014415.t1 AT3G22170 27.568 185 125 4 258 442 475 650 1.53e-13 75.1
MS.gene014415.t1 AT3G22170 27.568 185 125 4 258 442 475 650 1.53e-13 75.1
MS.gene014415.t1 AT2G27110 26.341 205 141 3 224 419 249 452 1.64e-13 75.1
MS.gene014415.t1 AT2G27110 26.341 205 141 3 224 419 394 597 1.76e-13 75.1
MS.gene014415.t1 AT2G27110 26.341 205 141 3 224 419 394 597 1.76e-13 75.1
MS.gene014415.t1 AT3G06250 29.054 148 104 1 260 407 562 708 2.53e-13 74.3
MS.gene014415.t1 AT3G06250 29.054 148 104 1 260 407 562 708 2.53e-13 74.3
MS.gene014415.t1 AT3G06250 29.054 148 104 1 260 407 562 708 2.53e-13 74.3
MS.gene014415.t1 AT3G59470 31.288 163 107 3 10 171 16 174 5.20e-13 70.5
MS.gene014415.t1 AT3G59470 31.288 163 107 3 10 171 16 174 5.20e-13 70.5
MS.gene014415.t1 AT3G59470 31.288 163 107 3 10 171 28 186 6.81e-13 70.1
MS.gene014415.t1 AT3G07500 38.679 106 62 2 64 169 34 136 2.99e-12 67.4
MS.gene014415.t1 AT5G28530 26.829 164 111 5 69 227 61 220 1.15e-11 68.9
MS.gene014415.t1 AT5G28530 26.829 164 111 5 69 227 61 220 1.18e-11 68.9
MS.gene014415.t1 AT5G28530 26.829 164 111 5 69 227 61 220 1.54e-11 68.6
MS.gene014415.t1 AT5G28530 26.829 164 111 5 69 227 61 220 1.63e-11 68.6
MS.gene014415.t1 AT5G28530 26.829 164 111 5 69 227 61 220 1.63e-11 68.6
MS.gene014415.t1 AT4G19990 30.986 142 88 3 299 437 454 588 8.89e-11 66.2
MS.gene014415.t1 AT4G19990 30.986 142 88 3 299 437 454 588 8.89e-11 66.2

Find 155 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCTATGTATTCTATAAA+TGG 0.106117 3.1:-90337960 MS.gene014415:CDS
CCATGACTGGTTCCCATTAT+TGG 0.117147 3.1:+90339243 None:intergenic
AAAGATTTGTATAACTATTT+TGG 0.141248 3.1:-90340446 MS.gene014415:CDS
AAAGTATTCTAAACTAAAAT+TGG 0.188480 3.1:-90339082 MS.gene014415:CDS
TGATGTAATGGATGATATTT+TGG 0.190992 3.1:-90339115 MS.gene014415:CDS
CCTCCTATTCATTCTATAAA+TGG 0.204960 3.1:-90337705 MS.gene014415:CDS
ACTCTCCATCTCAAGCTTTC+TGG 0.209501 3.1:+90340665 None:intergenic
TGGTGATTACAATGAGAATT+TGG 0.226630 3.1:-90340999 MS.gene014415:CDS
GATATTATGAATCTTGATTT+TGG 0.243439 3.1:-90340923 MS.gene014415:CDS
TATCAAAACATGTCATATAA+TGG 0.255086 3.1:-90340519 MS.gene014415:CDS
TACATTTATTTCCTGCATAT+CGG 0.267468 3.1:-90340592 MS.gene014415:CDS
TGGTGCATTTGGTGTATATT+TGG 0.274057 3.1:+90338264 None:intergenic
GAATGCTAAGATTCCAATAA+TGG 0.282353 3.1:-90339256 MS.gene014415:CDS
TTTGATGAGGATGGAGATAA+TGG 0.283559 3.1:-90341079 MS.gene014415:CDS
AAAGCACCGGTTTCGTTGTT+AGG 0.291848 3.1:-90340859 MS.gene014415:CDS
ATCAAAACATGTCATATAAT+GGG 0.301079 3.1:-90340518 MS.gene014415:CDS
TTGCTTCTCTAAGCTATCTT+CGG 0.321466 3.1:-90340385 MS.gene014415:CDS
ACATTTATTTCCTGCATATC+GGG 0.352320 3.1:-90340591 MS.gene014415:CDS
GGCGAGCTGGACAATTATTC+CGG 0.353940 3.1:+90340705 None:intergenic
TGTTGTGGTTGCTGCAAAAT+AGG 0.356935 3.1:+90338180 None:intergenic
CATTTGTAGGAGGAAGTCTT+TGG 0.359447 3.1:+90338214 None:intergenic
TTCTGTTAATCTTGATCTTA+CGG 0.373575 3.1:+90338682 None:intergenic
TGCTTCTCTAAGCTATCTTC+GGG 0.374894 3.1:-90340384 MS.gene014415:CDS
AGGAAGTACTTGACTAGAAT+TGG 0.374974 3.1:+90337980 None:intergenic
TTATCAATTTGCTTTCCAAT+AGG 0.376238 3.1:+90338484 None:intergenic
GGAATGCCACGAACTACTAA+TGG 0.377492 3.1:-90337548 MS.gene014415:CDS
AATGCAGTTAACCATCCTAT+TGG 0.378186 3.1:-90338499 MS.gene014415:CDS
TTGGATTCTTGTGTAATAGA+TGG 0.384545 3.1:-90340980 MS.gene014415:CDS
TGGCCATTTATAGAATGAAT+AGG 0.387122 3.1:+90337702 None:intergenic
TGTGGTGGTTGCTGTAAAAT+AGG 0.389749 3.1:+90337672 None:intergenic
CATATTCAGCAGCATGTGAT+AGG 0.389828 3.1:-90339176 MS.gene014415:CDS
GCACTATCCAATGTATCATT+TGG 0.397797 3.1:-90337748 MS.gene014415:CDS
TCTGATCCGGTGTTGATAAC+TGG 0.398541 3.1:-90339600 MS.gene014415:CDS
GACCTTTGTTCATGACTTGT+TGG 0.399009 3.1:+90337504 None:intergenic
CATAATAGCTTGACTTTCAT+CGG 0.403705 3.1:+90338299 None:intergenic
TAGTGCATTTGGTGTACATT+TGG 0.404990 3.1:+90338020 None:intergenic
GCTGTAAAATAGGAGTAGTT+TGG 0.409130 3.1:+90337682 None:intergenic
ACAGTGTCTAAACCTCTTCA+TGG 0.409388 3.1:+90338963 None:intergenic
GGAGGAGTTTGACCATTTGT+AGG 0.411838 3.1:+90338201 None:intergenic
AATGCTAAGATTCCAATAAT+GGG 0.412224 3.1:-90339255 MS.gene014415:CDS
TGCAAAGTTGCAGCTGAAAG+TGG 0.416677 3.1:-90339150 MS.gene014415:CDS
AACACTTGACTAGGGTCAAT+AGG 0.418818 3.1:-90340751 MS.gene014415:CDS
CTTTGGCTTGAATTGACAAA+AGG 0.423236 3.1:+90338231 None:intergenic
TCAGAAGGGAACAGACATAT+TGG 0.427242 3.1:-90339036 MS.gene014415:CDS
CCATTTATAGAATACATAGA+AGG 0.434699 3.1:+90337960 None:intergenic
CTGGTGCTAACCACAATGTT+AGG 0.437522 3.1:-90338930 MS.gene014415:CDS
GATACATTGGATAGTGCATT+TGG 0.439923 3.1:+90337754 None:intergenic
ATCTTTCCTAACAACGAAAC+CGG 0.440915 3.1:+90340853 None:intergenic
TTCGTCAATCCCCGATATGC+AGG 0.441670 3.1:+90340581 None:intergenic
CAGAATGAAACAAACCATCT+TGG 0.444221 3.1:-90337816 MS.gene014415:CDS
GGTGTATATTTGGCTGCACT+TGG 0.444676 3.1:+90338274 None:intergenic
ACTTATCTTCAACATCCAAT+TGG 0.444851 3.1:+90339475 None:intergenic
GAGGCATTGGATGGTGCATT+TGG 0.445253 3.1:+90338253 None:intergenic
CTTCTATGTATTCTATAAAT+GGG 0.447359 3.1:-90337959 MS.gene014415:CDS
AAAGTGTACCGCAGCAAAGT+TGG 0.448110 3.1:-90340830 MS.gene014415:CDS
GGCTGCACTGTTGACATCAT+AGG 0.450005 3.1:+90338041 None:intergenic
GGTCGCACTTGAGACATCAT+AGG 0.454712 3.1:+90337786 None:intergenic
CCCGATGTTATACGATCTAA+AGG 0.458963 3.1:-90339009 MS.gene014415:CDS
GGGGTACATGGTGGCAAACA+AGG 0.461825 3.1:-90340498 MS.gene014415:CDS
CTCAGATGTATAAATCTTTG+CGG 0.462602 3.1:+90339554 None:intergenic
AAGTGTACCGCAGCAAAGTT+GGG 0.465894 3.1:-90340829 MS.gene014415:CDS
TCCGGTGTTGATAACTGGTC+TGG 0.467260 3.1:-90339595 MS.gene014415:CDS
TAGTGCATTTGGTGTACATT+TGG 0.468787 3.1:+90337765 None:intergenic
ATCCATTCCATTCCCATGAC+TGG 0.470611 3.1:+90339230 None:intergenic
AAGTATTCTAAACTAAAATT+GGG 0.472379 3.1:-90339081 MS.gene014415:CDS
CCAATAATGGGAACCAGTCA+TGG 0.474453 3.1:-90339243 MS.gene014415:CDS
CAAGCAGTTTGATATTGAAA+AGG 0.474683 3.1:-90339287 MS.gene014415:CDS
GCGAGCTGGACAATTATTCC+GGG 0.478461 3.1:+90340706 None:intergenic
CATCATAGGTTGGCTTGCAA+TGG 0.483995 3.1:+90338055 None:intergenic
GATGCATTGGATAGTGCATT+TGG 0.485433 3.1:+90338009 None:intergenic
TAAGAGTAATACCTCTGATC+CGG 0.486946 3.1:-90339613 MS.gene014415:CDS
AGACACTGTTCAAATTGTAC+TGG 0.491511 3.1:-90338949 MS.gene014415:CDS
TCTAGAGACCACGATGTCTC+TGG 0.494750 3.1:-90341019 MS.gene014415:CDS
ATAATAGCTTGACTTTCATC+GGG 0.495573 3.1:+90338300 None:intergenic
CAATTTGCTTTCCAATAGGA+TGG 0.496621 3.1:+90338488 None:intergenic
TTGATGAGGATGGAGATAAT+GGG 0.498718 3.1:-90341078 MS.gene014415:CDS
TCCATCGACACCATTACGCT+TGG 0.509287 3.1:+90338900 None:intergenic
GTTAATTGTTCATGACCAAT+TGG 0.511355 3.1:-90339490 MS.gene014415:CDS
CAAAGACTTCCTCCTACAAA+TGG 0.512483 3.1:-90338213 MS.gene014415:CDS
ATGGGTATTGATATTAAAGA+TGG 0.513994 3.1:-90340416 MS.gene014415:CDS
GAATTGACAAAAGGAGGCAT+TGG 0.514641 3.1:+90338240 None:intergenic
CCGATGTTATACGATCTAAA+GGG 0.516186 3.1:-90339008 MS.gene014415:CDS
TAACGTATACGAAGGCGAGC+TGG 0.516616 3.1:+90340692 None:intergenic
GATGAGCCATTAGTAGTTCG+TGG 0.519030 3.1:+90337542 None:intergenic
CCTTTAGATCGTATAACATC+GGG 0.520619 3.1:+90339009 None:intergenic
TCATAGGTTGACTTCCAAGA+TGG 0.521243 3.1:+90337802 None:intergenic
CTAATATGATAGAGCTTGCT+CGG 0.521561 3.1:-90339206 MS.gene014415:CDS
GCAAAGTTGCAGCTGAAAGT+GGG 0.522215 3.1:-90339149 MS.gene014415:CDS
AATGAATAGGAGGAAGTACT+TGG 0.526943 3.1:+90337715 None:intergenic
ATGTGTGGTCAAAGTTATGC+AGG 0.527030 3.1:+90339673 None:intergenic
CTGGACAATTATTCCGGGTG+AGG 0.532213 3.1:+90340711 None:intergenic
TAGGTTGGCTTGCAATGGGA+TGG 0.532929 3.1:+90338060 None:intergenic
ATTCTTGTGTAATAGATGGT+AGG 0.533148 3.1:-90340976 MS.gene014415:CDS
GCAGTTTGATATTGAAAAGG+TGG 0.534190 3.1:-90339284 MS.gene014415:CDS
TTCTATACTCTCTCAATGTG+TGG 0.535446 3.1:+90339658 None:intergenic
CATAATATCATCCGCCGTCA+TGG 0.536322 3.1:+90340937 None:intergenic
ATCATAGGTTGGCTTGCAAT+GGG 0.536598 3.1:+90338056 None:intergenic
ACTTGACTAGAATTGGCAAA+AGG 0.540784 3.1:+90337987 None:intergenic
GAATTGGCAAAAGGATGCAT+TGG 0.541168 3.1:+90337996 None:intergenic
GAATTAGCCAAATGATACAT+TGG 0.541331 3.1:+90337741 None:intergenic
TGGCTTGAATTGACAAAAGG+AGG 0.543222 3.1:+90338234 None:intergenic
TAGGACAAAGAAATGTCTAA+AGG 0.545001 3.1:-90338728 MS.gene014415:CDS
GGCGATTTAAACAACATCCA+TGG 0.546504 3.1:-90338707 MS.gene014415:CDS
CCCAAGCGTAATGGTGTCGA+TGG 0.547288 3.1:-90338901 MS.gene014415:CDS
ATGGGAACCAGTCATGGGAA+TGG 0.547754 3.1:-90339237 MS.gene014415:CDS
TATACAATACAAACCTGTTG+TGG 0.551522 3.1:+90338165 None:intergenic
GCACTGTTGACATCATAGGT+TGG 0.554976 3.1:+90338045 None:intergenic
ATGTCATATAATGGGGTACA+TGG 0.556484 3.1:-90340510 MS.gene014415:CDS
GTCAAGACACAAAATTCAGA+AGG 0.556614 3.1:-90339051 MS.gene014415:CDS
CCATCGACACCATTACGCTT+GGG 0.563477 3.1:+90338901 None:intergenic
AGGACATGTCCCAAGCGTAA+TGG 0.564262 3.1:-90338910 MS.gene014415:CDS
TGGACAATTATTCCGGGTGA+GGG 0.565731 3.1:+90340712 None:intergenic
GAGAACATAGACCCCTCACC+CGG 0.567472 3.1:-90340724 MS.gene014415:CDS
AGATCAAGATTAACAGAACA+TGG 0.572591 3.1:-90338677 MS.gene014415:CDS
CCCTTTAGATCGTATAACAT+CGG 0.573562 3.1:+90339008 None:intergenic
GTGTATATTTGGCTGCACTT+GGG 0.573918 3.1:+90338275 None:intergenic
GGAGTTTGACCATTTGTAGG+AGG 0.576231 3.1:+90338204 None:intergenic
AACCAGTCATGGGAATGGAA+TGG 0.579805 3.1:-90339232 MS.gene014415:CDS
CAATAATGGGAACCAGTCAT+GGG 0.581291 3.1:-90339242 MS.gene014415:CDS
CAAGATTAACAGAACATGGA+AGG 0.582220 3.1:-90338673 MS.gene014415:CDS
CATTTATTTCCTGCATATCG+GGG 0.582815 3.1:-90340590 MS.gene014415:CDS
ATCTTGATCTTACGGAACCA+TGG 0.586359 3.1:+90338690 None:intergenic
GGTGGTTGCTGTAAAATAAG+AGG 0.588777 3.1:+90337930 None:intergenic
GGGTACATGGTGGCAAACAA+GGG 0.589509 3.1:-90340497 MS.gene014415:CDS
TGACAAAAGGAGGCATTGGA+TGG 0.591535 3.1:+90338244 None:intergenic
TGTTAAGATTAATACCATGA+CGG 0.594275 3.1:-90340951 MS.gene014415:CDS
CAAAGTTGCAGCTGAAAGTG+GGG 0.602434 3.1:-90339148 MS.gene014415:CDS
GTTGACAGTATGCAATCGTA+CGG 0.607441 3.1:-90340542 MS.gene014415:CDS
CCATTTATAGAATGAATAGG+AGG 0.608139 3.1:+90337705 None:intergenic
TACATGGTGGCAAACAAGGG+TGG 0.611316 3.1:-90340494 MS.gene014415:CDS
CTTCTCTAAGCTATCTTCGG+GGG 0.613173 3.1:-90340382 MS.gene014415:CDS
AGTTATCAACACCGGATCAG+AGG 0.615238 3.1:+90339602 None:intergenic
CGATGTTATACGATCTAAAG+GGG 0.619205 3.1:-90339007 MS.gene014415:CDS
TGTAGATTGTTTGAGTCTCG+CGG 0.625379 3.1:-90339366 MS.gene014415:CDS
CTGGATTATAACGTATACGA+AGG 0.628678 3.1:+90340684 None:intergenic
TCCAGACCAGTTATCAACAC+CGG 0.632781 3.1:+90339594 None:intergenic
TGGGACATGTCCTAACATTG+TGG 0.635268 3.1:+90338920 None:intergenic
ATAATCCAGAAAGCTTGAGA+TGG 0.638128 3.1:-90340670 MS.gene014415:CDS
GCTTCTCTAAGCTATCTTCG+GGG 0.639112 3.1:-90340383 MS.gene014415:CDS
AGAAAGCTTGAGATGGAGAG+TGG 0.639417 3.1:-90340663 MS.gene014415:CDS
AAGGGTGGATATGATGCTGT+TGG 0.642784 3.1:-90340479 MS.gene014415:CDS
GGACAATTATTCCGGGTGAG+GGG 0.643647 3.1:+90340713 None:intergenic
CTCCAACAAGTCATGAACAA+AGG 0.646798 3.1:-90337506 MS.gene014415:CDS
TATTCTAAACTAAAATTGGG+AGG 0.648453 3.1:-90339078 MS.gene014415:CDS
TATATAATACACACATGTGG+TGG 0.648699 3.1:+90337657 None:intergenic
TCAAAACATGTCATATAATG+GGG 0.649125 3.1:-90340517 MS.gene014415:CDS
TATACAATACAAACCTGTGG+TGG 0.650890 3.1:+90337912 None:intergenic
ATCGCAAATCGACAGTGATG+AGG 0.651172 3.1:-90338878 MS.gene014415:CDS
TCATATAATGGGGTACATGG+TGG 0.662255 3.1:-90340507 MS.gene014415:CDS
TTTGTTTCCCAACTTTGCTG+CGG 0.666357 3.1:+90340822 None:intergenic
ATGATAGAGCTTGCTCGGTG+TGG 0.668531 3.1:-90339201 MS.gene014415:CDS
TCAAGACACAAAATTCAGAA+GGG 0.677191 3.1:-90339050 MS.gene014415:CDS
TGTAATCACCAGAGACATCG+TGG 0.695321 3.1:+90341011 None:intergenic
TAAGATTAATACCATGACGG+CGG 0.698475 3.1:-90340948 MS.gene014415:CDS
TGTGGTTGCTGCAAAATAGG+AGG 0.703437 3.1:+90338183 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAATGTATATATTTTGA+TGG + chr3.1:90338006-90338025 None:intergenic 10.0%
!!! ATAAATGTATATATTTTGAT+GGG + chr3.1:90338005-90338024 None:intergenic 10.0%
!! AAAAATCAAGTAAATTGATA+TGG + chr3.1:90340166-90340185 None:intergenic 15.0%
!! AAGTATTCTAAACTAAAATT+GGG - chr3.1:90339527-90339546 MS.gene014415:CDS 15.0%
!! TGATGATTCATTAAAAAAAA+AGG + chr3.1:90339846-90339865 None:intergenic 15.0%
!! TTATATGTAAAATATGAGAA+GGG - chr3.1:90338270-90338289 MS.gene014415:CDS 15.0%
!!! AAAATTGAAAAGATTGTTTT+GGG - chr3.1:90338302-90338321 MS.gene014415:CDS 15.0%
!!! AAAGATTTGTATAACTATTT+TGG - chr3.1:90338162-90338181 MS.gene014415:intron 15.0%
!!! AAAGTATTCTAAACTAAAAT+TGG - chr3.1:90339526-90339545 MS.gene014415:CDS 15.0%
!!! GTATTTATTTTTTTTGTATG+TGG + chr3.1:90338385-90338404 None:intergenic 15.0%
!!! TAAATGTATATATTTTGATG+GGG + chr3.1:90338004-90338023 None:intergenic 15.0%
!!! TAAATTACTATAGACAATTT+TGG + chr3.1:90340016-90340035 None:intergenic 15.0%
!!! TCATATTTTACATATAACAT+AGG + chr3.1:90338267-90338286 None:intergenic 15.0%
!!! TTTTAGTTTAGAATACTTTT+CGG + chr3.1:90339525-90339544 None:intergenic 15.0%
!! AAATAAATACAATCTTCCTT+TGG - chr3.1:90338395-90338414 MS.gene014415:intron 20.0%
!! ACAAAAATAATATGAGAACA+TGG + chr3.1:90339272-90339291 None:intergenic 20.0%
!! ACATTCTGTAAAAACATAAA+AGG + chr3.1:90340040-90340059 None:intergenic 20.0%
!! ATCAAAACATGTCATATAAT+GGG - chr3.1:90338090-90338109 MS.gene014415:intron 20.0%
!! CTTCTATGTATTCTATAAAT+GGG - chr3.1:90340649-90340668 MS.gene014415:CDS 20.0%
!! GTTATATGTAAAATATGAGA+AGG - chr3.1:90338269-90338288 MS.gene014415:CDS 20.0%
!! TATCAAAACATGTCATATAA+TGG - chr3.1:90338089-90338108 MS.gene014415:intron 20.0%
!! TATTATATAATACACACATG+TGG + chr3.1:90340957-90340976 None:intergenic 20.0%
!!! ATGTTTTTACAAAATGTGAA+GGG - chr3.1:90340221-90340240 MS.gene014415:intron 20.0%
!!! ATTCACAAACGATTATTTTT+GGG - chr3.1:90338442-90338461 MS.gene014415:intron 20.0%
!!! GAAAATTGAAAAGATTGTTT+TGG - chr3.1:90338301-90338320 MS.gene014415:CDS 20.0%
!!! GATATTATGAATCTTGATTT+TGG - chr3.1:90337685-90337704 MS.gene014415:CDS 20.0%
!!! TATGTTTTTACAAAATGTGA+AGG - chr3.1:90340220-90340239 MS.gene014415:intron 20.0%
!!! TCAAATTGTTTTTGTAAATC+TGG - chr3.1:90339813-90339832 MS.gene014415:intron 20.0%
!!! TCATGATTTCAGTATTTTTT+TGG - chr3.1:90341039-90341058 MS.gene014415:CDS 20.0%
!!! TGAATTACTAAAGACAATTT+TGG + chr3.1:90340194-90340213 None:intergenic 20.0%
!!! TTCTGATTTTAATTTTGATG+AGG - chr3.1:90337516-90337535 MS.gene014415:CDS 20.0%
!!! TTTTGCATACTTTTGATAAA+AGG + chr3.1:90337731-90337750 None:intergenic 20.0%
! AAACAATAGAGACATATACA+TGG - chr3.1:90338484-90338503 MS.gene014415:CDS 25.0%
! AACAATAGAGACATATACAT+GGG - chr3.1:90338485-90338504 MS.gene014415:CDS 25.0%
! AATGCTAAGATTCCAATAAT+GGG - chr3.1:90339353-90339372 MS.gene014415:CDS 25.0%
! ATACGAGAACAAGAAATTAT+GGG - chr3.1:90338797-90338816 MS.gene014415:intron 25.0%
! CAAAAATAATCGTTTGTGAA+TGG + chr3.1:90338443-90338462 None:intergenic 25.0%
! CCATTTATAGAATACATAGA+AGG + chr3.1:90340651-90340670 None:intergenic 25.0%
! CCTTCTATGTATTCTATAAA+TGG - chr3.1:90340648-90340667 MS.gene014415:CDS 25.0%
! TACATTTATTTCCTGCATAT+CGG - chr3.1:90338016-90338035 MS.gene014415:CDS 25.0%
! TATTCTAAACTAAAATTGGG+AGG - chr3.1:90339530-90339549 MS.gene014415:CDS 25.0%
! TCAAAACATGTCATATAATG+GGG - chr3.1:90338091-90338110 MS.gene014415:intron 25.0%
! TGTTAAGATTAATACCATGA+CGG - chr3.1:90337657-90337676 MS.gene014415:intron 25.0%
! TTCTGTTAATCTTGATCTTA+CGG + chr3.1:90339929-90339948 None:intergenic 25.0%
!! AATTCATTTCTAGAAGCAAT+GGG - chr3.1:90338513-90338532 MS.gene014415:CDS 25.0%
!! ATGGAAAAAGTTTTCTTCTT+TGG + chr3.1:90339629-90339648 None:intergenic 25.0%
!! CAATCTTTTCAATTTTCCAT+TGG + chr3.1:90338298-90338317 None:intergenic 25.0%
!! CATTCACAAACGATTATTTT+TGG - chr3.1:90338441-90338460 MS.gene014415:intron 25.0%
!! TTATCAATTTGCTTTCCAAT+AGG + chr3.1:90340127-90340146 None:intergenic 25.0%
!! TTTTCAATATCAAACTGCTT+GGG + chr3.1:90339322-90339341 None:intergenic 25.0%
!!! AACAATCACATAAGTTGATA+AGG + chr3.1:90339988-90340007 None:intergenic 25.0%
!!! AACTATTTTGGCAAGAAAAT+GGG - chr3.1:90338174-90338193 MS.gene014415:intron 25.0%
!!! ATGGGTATTGATATTAAAGA+TGG - chr3.1:90338192-90338211 MS.gene014415:CDS 25.0%
!!! ATGTTTTTACAGAATGTGAA+GGG - chr3.1:90340043-90340062 MS.gene014415:intron 25.0%
!!! CATCATTTTTAACATCTTGT+AGG - chr3.1:90339861-90339880 MS.gene014415:intron 25.0%
!!! CGAAATGATTTTTTGTGTTA+TGG - chr3.1:90338339-90338358 MS.gene014415:CDS 25.0%
!!! GATTTTAATTTTGATGAGGA+TGG - chr3.1:90337520-90337539 MS.gene014415:CDS 25.0%
!!! TAACTATTTTGGCAAGAAAA+TGG - chr3.1:90338173-90338192 MS.gene014415:intron 25.0%
!!! TACTTTCGAGATAAGTTTTT+TGG - chr3.1:90338828-90338847 MS.gene014415:intron 25.0%
!!! TATGTTTTTACAGAATGTGA+AGG - chr3.1:90340042-90340061 MS.gene014415:intron 25.0%
!!! TGATGTAATGGATGATATTT+TGG - chr3.1:90339493-90339512 MS.gene014415:CDS 25.0%
!!! TTCACAAACGATTATTTTTG+GGG - chr3.1:90338443-90338462 MS.gene014415:intron 25.0%
AAAACTCTTCAAATTCCTCT+GGG + chr3.1:90338722-90338741 None:intergenic 30.0%
AAGCAAAAAACACTTGACTA+GGG - chr3.1:90337849-90337868 MS.gene014415:intron 30.0%
ACATTTATTTCCTGCATATC+GGG - chr3.1:90338017-90338036 MS.gene014415:CDS 30.0%
ACTTATCTTCAACATCCAAT+TGG + chr3.1:90339136-90339155 None:intergenic 30.0%
AGATCAAGATTAACAGAACA+TGG - chr3.1:90339931-90339950 MS.gene014415:intron 30.0%
ATAATAGCTTGACTTTCATC+GGG + chr3.1:90340311-90340330 None:intergenic 30.0%
ATTCTTGTGTAATAGATGGT+AGG - chr3.1:90337632-90337651 MS.gene014415:intron 30.0%
CAACGAAAAATATCGAAAAG+AGG - chr3.1:90339181-90339200 MS.gene014415:CDS 30.0%
CAAGCAGTTTGATATTGAAA+AGG - chr3.1:90339321-90339340 MS.gene014415:CDS 30.0%
CAGTTTGTGTGCAATAAAAA+TGG - chr3.1:90337820-90337839 MS.gene014415:intron 30.0%
CATAATAGCTTGACTTTCAT+CGG + chr3.1:90340312-90340331 None:intergenic 30.0%
CATACGAGAACAAGAAATTA+TGG - chr3.1:90338796-90338815 MS.gene014415:intron 30.0%
CCATTTATAGAATGAATAGG+AGG + chr3.1:90340906-90340925 None:intergenic 30.0%
CCTCCTATTCATTCTATAAA+TGG - chr3.1:90340903-90340922 MS.gene014415:CDS 30.0%
CTCAGATGTATAAATCTTTG+CGG + chr3.1:90339057-90339076 None:intergenic 30.0%
GAATGCTAAGATTCCAATAA+TGG - chr3.1:90339352-90339371 MS.gene014415:CDS 30.0%
GAATTAGCCAAATGATACAT+TGG + chr3.1:90340870-90340889 None:intergenic 30.0%
GTTAATTGTTCATGACCAAT+TGG - chr3.1:90339118-90339137 MS.gene014415:CDS 30.0%
TACTATACAATACAAACCTG+TGG + chr3.1:90340702-90340721 None:intergenic 30.0%
TAGGACAAAGAAATGTCTAA+AGG - chr3.1:90339880-90339899 MS.gene014415:intron 30.0%
TATACAATACAAACCTGTTG+TGG + chr3.1:90340446-90340465 None:intergenic 30.0%
TATATAATACACACATGTGG+TGG + chr3.1:90340954-90340973 None:intergenic 30.0%
TCAAGACACAAAATTCAGAA+GGG - chr3.1:90339558-90339577 MS.gene014415:CDS 30.0%
TGGCCATTTATAGAATGAAT+AGG + chr3.1:90340909-90340928 None:intergenic 30.0%
TGGTGATTACAATGAGAATT+TGG - chr3.1:90337609-90337628 MS.gene014415:intron 30.0%
TTGGATTCTTGTGTAATAGA+TGG - chr3.1:90337628-90337647 MS.gene014415:intron 30.0%
TTTCAAGAAAGCAATGTACT+CGG - chr3.1:90338689-90338708 MS.gene014415:CDS 30.0%
! AAACTTATCTCGAAAGTATG+CGG + chr3.1:90338826-90338845 None:intergenic 30.0%
! AGAGGAATTTGAAGAGTTTT+GGG - chr3.1:90338722-90338741 MS.gene014415:CDS 30.0%
! CTTTTCAATATCAAACTGCT+TGG + chr3.1:90339323-90339342 None:intergenic 30.0%
! GAATTCATTTCTAGAAGCAA+TGG - chr3.1:90338512-90338531 MS.gene014415:CDS 30.0%
! TTTCTTGTTCTCGTATGTTT+TGG + chr3.1:90338793-90338812 None:intergenic 30.0%
!! AGAAAACTTTTTCCATGAAG+AGG - chr3.1:90339633-90339652 MS.gene014415:CDS 30.0%
!!! ATAAGTTTTTTGGTCGCATA+CGG - chr3.1:90338838-90338857 MS.gene014415:CDS 30.0%
!!! GGCATGTTTTAATGATGTAA+TGG - chr3.1:90339481-90339500 MS.gene014415:CDS 30.0%
AAACTCTTCAAATTCCTCTG+GGG + chr3.1:90338721-90338740 None:intergenic 35.0%
AATGCAGTTAACCATCCTAT+TGG - chr3.1:90340109-90340128 MS.gene014415:intron 35.0%
ACACAGTCTATGAAATGCTT+CGG + chr3.1:90338610-90338629 None:intergenic 35.0%
ACTTGACTAGAATTGGCAAA+AGG + chr3.1:90340624-90340643 None:intergenic 35.0%
AGACACTGTTCAAATTGTAC+TGG - chr3.1:90339659-90339678 MS.gene014415:CDS 35.0%
ATAATCCAGAAAGCTTGAGA+TGG - chr3.1:90337938-90337957 MS.gene014415:CDS 35.0%
ATCTTTCCTAACAACGAAAC+CGG + chr3.1:90337758-90337777 None:intergenic 35.0%
CAAAACTCTTCAAATTCCTC+TGG + chr3.1:90338723-90338742 None:intergenic 35.0%
CAAGATTAACAGAACATGGA+AGG - chr3.1:90339935-90339954 MS.gene014415:intron 35.0%
CAGAATGAAACAAACCATCT+TGG - chr3.1:90340792-90340811 MS.gene014415:CDS 35.0%
CATTTATTTCCTGCATATCG+GGG - chr3.1:90338018-90338037 MS.gene014415:CDS 35.0%
CCCTTTAGATCGTATAACAT+CGG + chr3.1:90339603-90339622 None:intergenic 35.0%
CCGATGTTATACGATCTAAA+GGG - chr3.1:90339600-90339619 MS.gene014415:CDS 35.0%
CCTTTAGATCGTATAACATC+GGG + chr3.1:90339602-90339621 None:intergenic 35.0%
CGATGTTATACGATCTAAAG+GGG - chr3.1:90339601-90339620 MS.gene014415:CDS 35.0%
CTGGATTATAACGTATACGA+AGG + chr3.1:90337927-90337946 None:intergenic 35.0%
GAAGCAAAAAACACTTGACT+AGG - chr3.1:90337848-90337867 MS.gene014415:intron 35.0%
GATACATTGGATAGTGCATT+TGG + chr3.1:90340857-90340876 None:intergenic 35.0%
GCACTATCCAATGTATCATT+TGG - chr3.1:90340860-90340879 MS.gene014415:CDS 35.0%
GCAGTTTGATATTGAAAAGG+TGG - chr3.1:90339324-90339343 MS.gene014415:CDS 35.0%
GCTGTAAAATAGGAGTAGTT+TGG + chr3.1:90340929-90340948 None:intergenic 35.0%
GTCAAGACACAAAATTCAGA+AGG - chr3.1:90339557-90339576 MS.gene014415:CDS 35.0%
TAAGAGTAATACCTCTGATC+CGG - chr3.1:90338995-90339014 MS.gene014415:CDS 35.0%
TAAGATTAATACCATGACGG+CGG - chr3.1:90337660-90337679 MS.gene014415:intron 35.0%
TATACAATACAAACCTGTGG+TGG + chr3.1:90340699-90340718 None:intergenic 35.0%
TGAGCTACAAGGTAACAATT+GGG - chr3.1:90338764-90338783 MS.gene014415:intron 35.0%
TTCTATACTCTCTCAATGTG+TGG + chr3.1:90338953-90338972 None:intergenic 35.0%
TTGATGAGGATGGAGATAAT+GGG - chr3.1:90337530-90337549 MS.gene014415:CDS 35.0%
TTGCTTCTCTAAGCTATCTT+CGG - chr3.1:90338223-90338242 MS.gene014415:CDS 35.0%
TTTGATGAGGATGGAGATAA+TGG - chr3.1:90337529-90337548 MS.gene014415:CDS 35.0%
! ATGTCATATAATGGGGTACA+TGG - chr3.1:90338098-90338117 MS.gene014415:intron 35.0%
! CAAAAGTATGCAAAAAGCAC+CGG - chr3.1:90337736-90337755 MS.gene014415:CDS 35.0%
! CAATTTGCTTTCCAATAGGA+TGG + chr3.1:90340123-90340142 None:intergenic 35.0%
! CAGAGGAATTTGAAGAGTTT+TGG - chr3.1:90338721-90338740 MS.gene014415:CDS 35.0%
! CTAATATGATAGAGCTTGCT+CGG - chr3.1:90339402-90339421 MS.gene014415:CDS 35.0%
! CTTCCTTTGGTAATATTCTC+TGG - chr3.1:90338408-90338427 MS.gene014415:intron 35.0%
! GGAGAGTGGTAATTTTTGAA+GGG - chr3.1:90337959-90337978 MS.gene014415:CDS 35.0%
! TCTTTTGTCTTCTTCTGCTT+CGG + chr3.1:90340085-90340104 None:intergenic 35.0%
! TGGAGAGTGGTAATTTTTGA+AGG - chr3.1:90337958-90337977 MS.gene014415:CDS 35.0%
!! AAATATGAGAAGGGTACCAA+TGG - chr3.1:90338279-90338298 MS.gene014415:CDS 35.0%
!! AATGAATAGGAGGAAGTACT+TGG + chr3.1:90340896-90340915 None:intergenic 35.0%
!! AGGAAGTACTTGACTAGAAT+TGG + chr3.1:90340631-90340650 None:intergenic 35.0%
!! CTTTGGCTTGAATTGACAAA+AGG + chr3.1:90340380-90340399 None:intergenic 35.0%
!! TAGTGCATTTGGTGTACATT+TGG + chr3.1:90340591-90340610 None:intergenic 35.0%
!! TGGTGCATTTGGTGTATATT+TGG + chr3.1:90340347-90340366 None:intergenic 35.0%
!!! AAAAGATTGTTTTGGGCAGA+TGG - chr3.1:90338309-90338328 MS.gene014415:CDS 35.0%
!!! ATTTTGATGGGGTTAGTTCA+TGG + chr3.1:90337993-90338012 None:intergenic 35.0%
AACACTTGACTAGGGTCAAT+AGG - chr3.1:90337857-90337876 MS.gene014415:intron 40.0%
ACAACCAAAAGCAGTAGTGA+CGG - chr3.1:90338542-90338561 MS.gene014415:CDS 40.0%
ACAGTGTCTAAACCTCTTCA+TGG + chr3.1:90339648-90339667 None:intergenic 40.0%
ATCTTGATCTTACGGAACCA+TGG + chr3.1:90339921-90339940 None:intergenic 40.0%
ATGTGTGGTCAAAGTTATGC+AGG + chr3.1:90338938-90338957 None:intergenic 40.0%
ATTGATTGCTTCACACTGAG+AGG + chr3.1:90338868-90338887 None:intergenic 40.0%
CAAAGACTTCCTCCTACAAA+TGG - chr3.1:90340395-90340414 MS.gene014415:CDS 40.0%
CACAGTCTATGAAATGCTTC+GGG + chr3.1:90338609-90338628 None:intergenic 40.0%
CAGCCAGAGAATATTACCAA+AGG + chr3.1:90338414-90338433 None:intergenic 40.0%
CATATTCAGCAGCATGTGAT+AGG - chr3.1:90339432-90339451 MS.gene014415:CDS 40.0%
CATTTGTAGGAGGAAGTCTT+TGG + chr3.1:90340397-90340416 None:intergenic 40.0%
CCCGATGTTATACGATCTAA+AGG - chr3.1:90339599-90339618 MS.gene014415:CDS 40.0%
CTCCAACAAGTCATGAACAA+AGG - chr3.1:90341102-90341121 MS.gene014415:CDS 40.0%
GAATTGGCAAAAGGATGCAT+TGG + chr3.1:90340615-90340634 None:intergenic 40.0%
GATGCATTGGATAGTGCATT+TGG + chr3.1:90340602-90340621 None:intergenic 40.0%
GGCGATTTAAACAACATCCA+TGG - chr3.1:90339901-90339920 MS.gene014415:intron 40.0%
GGTGGTTGCTGTAAAATAAG+AGG + chr3.1:90340681-90340700 None:intergenic 40.0%
GTGAGCTACAAGGTAACAAT+TGG - chr3.1:90338763-90338782 MS.gene014415:intron 40.0%
GTGTATATTTGGCTGCACTT+GGG + chr3.1:90340336-90340355 None:intergenic 40.0%
GTTGACAGTATGCAATCGTA+CGG - chr3.1:90338066-90338085 MS.gene014415:CDS 40.0%
TCAGAAGGGAACAGACATAT+TGG - chr3.1:90339572-90339591 MS.gene014415:CDS 40.0%
TGCTTCTCTAAGCTATCTTC+GGG - chr3.1:90338224-90338243 MS.gene014415:CDS 40.0%
TGGCTTGAATTGACAAAAGG+AGG + chr3.1:90340377-90340396 None:intergenic 40.0%
TGTAGATTGTTTGAGTCTCG+CGG - chr3.1:90339242-90339261 MS.gene014415:CDS 40.0%
TGTGGTGGTTGCTGTAAAAT+AGG + chr3.1:90340684-90340703 None:intergenic 40.0%
TGTTGTGGTTGCTGCAAAAT+AGG + chr3.1:90340431-90340450 None:intergenic 40.0%
TTTGTTTCCCAACTTTGCTG+CGG + chr3.1:90337789-90337808 None:intergenic 40.0%
! CAATAATGGGAACCAGTCAT+GGG - chr3.1:90339366-90339385 MS.gene014415:CDS 40.0%
! CTTTTGTCTTCTTCTGCTTC+GGG + chr3.1:90340084-90340103 None:intergenic 40.0%
! GAATTGACAAAAGGAGGCAT+TGG + chr3.1:90340371-90340390 None:intergenic 40.0%
! GACCTTTGTTCATGACTTGT+TGG + chr3.1:90341107-90341126 None:intergenic 40.0%
! TATTTTACAGCAACCACCAC+AGG - chr3.1:90340683-90340702 MS.gene014415:CDS 40.0%
! TATTTTGCAGCAACCACAAC+AGG - chr3.1:90340430-90340449 MS.gene014415:CDS 40.0%
! TCATAGGTTGACTTCCAAGA+TGG + chr3.1:90340809-90340828 None:intergenic 40.0%
! TCATATAATGGGGTACATGG+TGG - chr3.1:90338101-90338120 MS.gene014415:intron 40.0%
!! ATCATAGGTTGGCTTGCAAT+GGG + chr3.1:90340555-90340574 None:intergenic 40.0%
!!! GATTATTTTTGGGGCTGCTT+TGG - chr3.1:90338452-90338471 MS.gene014415:intron 40.0%
AAAGTGTACCGCAGCAAAGT+TGG - chr3.1:90337778-90337797 MS.gene014415:CDS 45.0%
AACCAGTCATGGGAATGGAA+TGG - chr3.1:90339376-90339395 MS.gene014415:CDS 45.0%
AAGGGTGGATATGATGCTGT+TGG - chr3.1:90338129-90338148 MS.gene014415:intron 45.0%
AAGTGTACCGCAGCAAAGTT+GGG - chr3.1:90337779-90337798 MS.gene014415:CDS 45.0%
ACTCTCCATCTCAAGCTTTC+TGG + chr3.1:90337946-90337965 None:intergenic 45.0%
AGAAAGCTTGAGATGGAGAG+TGG - chr3.1:90337945-90337964 MS.gene014415:CDS 45.0%
AGCATTCTTGTGCAAATGCC+AGG + chr3.1:90338634-90338653 None:intergenic 45.0%
AGTTATCAACACCGGATCAG+AGG + chr3.1:90339009-90339028 None:intergenic 45.0%
ATCCATTCCATTCCCATGAC+TGG + chr3.1:90339381-90339400 None:intergenic 45.0%
ATCGCAAATCGACAGTGATG+AGG - chr3.1:90339730-90339749 MS.gene014415:intron 45.0%
CAAAGTTGCAGCTGAAAGTG+GGG - chr3.1:90339460-90339479 MS.gene014415:CDS 45.0%
CATAATATCATCCGCCGTCA+TGG + chr3.1:90337674-90337693 None:intergenic 45.0%
CATTTCATAGACTGTGTGCC+TGG - chr3.1:90338613-90338632 MS.gene014415:intron 45.0%
CTTCTCTAAGCTATCTTCGG+GGG - chr3.1:90338226-90338245 MS.gene014415:CDS 45.0%
GATGAGCCATTAGTAGTTCG+TGG + chr3.1:90341069-90341088 None:intergenic 45.0%
GCAAAGTTGCAGCTGAAAGT+GGG - chr3.1:90339459-90339478 MS.gene014415:CDS 45.0%
GCACTGTTGACATCATAGGT+TGG + chr3.1:90340566-90340585 None:intergenic 45.0%
GCTTCTCTAAGCTATCTTCG+GGG - chr3.1:90338225-90338244 MS.gene014415:CDS 45.0%
GGAATGCCACGAACTACTAA+TGG - chr3.1:90341060-90341079 MS.gene014415:CDS 45.0%
GGAGGAGTTTGACCATTTGT+AGG + chr3.1:90340410-90340429 None:intergenic 45.0%
GGAGTTTGACCATTTGTAGG+AGG + chr3.1:90340407-90340426 None:intergenic 45.0%
GGATGGTGACATGTCTATGA+GGG - chr3.1:90338563-90338582 MS.gene014415:intron 45.0%
GGTGTATATTTGGCTGCACT+TGG + chr3.1:90340337-90340356 None:intergenic 45.0%
GTTGAGATGAGTGAGCTACA+AGG - chr3.1:90338753-90338772 MS.gene014415:intron 45.0%
TCCAGACCAGTTATCAACAC+CGG + chr3.1:90339017-90339036 None:intergenic 45.0%
TGCAAAGTTGCAGCTGAAAG+TGG - chr3.1:90339458-90339477 MS.gene014415:CDS 45.0%
TGGACAATTATTCCGGGTGA+GGG + chr3.1:90337899-90337918 None:intergenic 45.0%
TGGGACATGTCCTAACATTG+TGG + chr3.1:90339691-90339710 None:intergenic 45.0%
TGTAATCACCAGAGACATCG+TGG + chr3.1:90337600-90337619 None:intergenic 45.0%
TGTGGTTGCTGCAAAATAGG+AGG + chr3.1:90340428-90340447 None:intergenic 45.0%
! CCAATAATGGGAACCAGTCA+TGG - chr3.1:90339365-90339384 MS.gene014415:CDS 45.0%
! CCATGACTGGTTCCCATTAT+TGG + chr3.1:90339368-90339387 None:intergenic 45.0%
! CTGGTGCTAACCACAATGTT+AGG - chr3.1:90339678-90339697 MS.gene014415:CDS 45.0%
!! AAAGCACCGGTTTCGTTGTT+AGG - chr3.1:90337749-90337768 MS.gene014415:CDS 45.0%
!! CATCATAGGTTGGCTTGCAA+TGG + chr3.1:90340556-90340575 None:intergenic 45.0%
!! TCTGATCCGGTGTTGATAAC+TGG - chr3.1:90339008-90339027 MS.gene014415:CDS 45.0%
!! TGACAAAAGGAGGCATTGGA+TGG + chr3.1:90340367-90340386 None:intergenic 45.0%
!!! GATTGTTTTGGGCAGATGGA+TGG - chr3.1:90338313-90338332 MS.gene014415:CDS 45.0%
AGGACATGTCCCAAGCGTAA+TGG - chr3.1:90339698-90339717 MS.gene014415:intron 50.0%
ATGGGAACCAGTCATGGGAA+TGG - chr3.1:90339371-90339390 MS.gene014415:CDS 50.0%
CCATCGACACCATTACGCTT+GGG + chr3.1:90339710-90339729 None:intergenic 50.0%
CGGATGGTGACATGTCTATG+AGG - chr3.1:90338562-90338581 MS.gene014415:intron 50.0%
CTGGACAATTATTCCGGGTG+AGG + chr3.1:90337900-90337919 None:intergenic 50.0%
GCGAGCTGGACAATTATTCC+GGG + chr3.1:90337905-90337924 None:intergenic 50.0%
GGACAATTATTCCGGGTGAG+GGG + chr3.1:90337898-90337917 None:intergenic 50.0%
GGCGAGCTGGACAATTATTC+CGG + chr3.1:90337906-90337925 None:intergenic 50.0%
GGCTGCACTGTTGACATCAT+AGG + chr3.1:90340570-90340589 None:intergenic 50.0%
GGGTACATGGTGGCAAACAA+GGG - chr3.1:90338111-90338130 MS.gene014415:intron 50.0%
GGTCGCACTTGAGACATCAT+AGG + chr3.1:90340825-90340844 None:intergenic 50.0%
TAACGTATACGAAGGCGAGC+TGG + chr3.1:90337919-90337938 None:intergenic 50.0%
TACATGGTGGCAAACAAGGG+TGG - chr3.1:90338114-90338133 MS.gene014415:intron 50.0%
TCCATCGACACCATTACGCT+TGG + chr3.1:90339711-90339730 None:intergenic 50.0%
TCTAAGCTATCTTCGGGGGA+AGG - chr3.1:90338230-90338249 MS.gene014415:CDS 50.0%
TCTAGAGACCACGATGTCTC+TGG - chr3.1:90337589-90337608 MS.gene014415:intron 50.0%
TTCGTCAATCCCCGATATGC+AGG + chr3.1:90338030-90338049 None:intergenic 50.0%
! ATGATAGAGCTTGCTCGGTG+TGG - chr3.1:90339407-90339426 MS.gene014415:CDS 50.0%
! CCAAAAGCAGTAGTGACGGA+TGG - chr3.1:90338546-90338565 MS.gene014415:CDS 50.0%
! CCATCCGTCACTACTGCTTT+TGG + chr3.1:90338549-90338568 None:intergenic 50.0%
!! GAGGCATTGGATGGTGCATT+TGG + chr3.1:90340358-90340377 None:intergenic 50.0%
!! TAGGTTGGCTTGCAATGGGA+TGG + chr3.1:90340551-90340570 None:intergenic 50.0%
!! TCCGGTGTTGATAACTGGTC+TGG - chr3.1:90339013-90339032 MS.gene014415:CDS 50.0%
GAGAACATAGACCCCTCACC+CGG - chr3.1:90337884-90337903 MS.gene014415:intron 55.0%
GGGGTACATGGTGGCAAACA+AGG - chr3.1:90338110-90338129 MS.gene014415:intron 55.0%
GTACTCGGATTTCACCCCAG+AGG - chr3.1:90338704-90338723 MS.gene014415:CDS 55.0%
! CCCAAGCGTAATGGTGTCGA+TGG - chr3.1:90339707-90339726 MS.gene014415:intron 55.0%
AGCTATCTTCGGGGGAAGGC+AGG - chr3.1:90338234-90338253 MS.gene014415:CDS 60.0%
TCTTCGGGGGAAGGCAGGCT+TGG - chr3.1:90338239-90338258 MS.gene014415:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 90337499 90341131 90337499 ID=MS.gene014415
chr3.1 mRNA 90337499 90341131 90337499 ID=MS.gene014415.t1;Parent=MS.gene014415
chr3.1 exon 90340362 90341131 90340362 ID=MS.gene014415.t1.exon1;Parent=MS.gene014415.t1
chr3.1 CDS 90340362 90341131 90340362 ID=cds.MS.gene014415.t1;Parent=MS.gene014415.t1
chr3.1 exon 90338831 90339707 90338831 ID=MS.gene014415.t1.exon2;Parent=MS.gene014415.t1
chr3.1 CDS 90338831 90339707 90338831 ID=cds.MS.gene014415.t1;Parent=MS.gene014415.t1
chr3.1 exon 90338661 90338747 90338661 ID=MS.gene014415.t1.exon3;Parent=MS.gene014415.t1
chr3.1 CDS 90338661 90338747 90338661 ID=cds.MS.gene014415.t1;Parent=MS.gene014415.t1
chr3.1 exon 90338483 90338575 90338483 ID=MS.gene014415.t1.exon4;Parent=MS.gene014415.t1
chr3.1 CDS 90338483 90338575 90338483 ID=cds.MS.gene014415.t1;Parent=MS.gene014415.t1
chr3.1 exon 90338179 90338388 90338179 ID=MS.gene014415.t1.exon5;Parent=MS.gene014415.t1
chr3.1 CDS 90338179 90338388 90338179 ID=cds.MS.gene014415.t1;Parent=MS.gene014415.t1
chr3.1 exon 90337926 90338093 90337926 ID=MS.gene014415.t1.exon6;Parent=MS.gene014415.t1
chr3.1 CDS 90337926 90338093 90337926 ID=cds.MS.gene014415.t1;Parent=MS.gene014415.t1
chr3.1 exon 90337671 90337835 90337671 ID=MS.gene014415.t1.exon7;Parent=MS.gene014415.t1
chr3.1 CDS 90337671 90337835 90337671 ID=cds.MS.gene014415.t1;Parent=MS.gene014415.t1
chr3.1 exon 90337499 90337579 90337499 ID=MS.gene014415.t1.exon8;Parent=MS.gene014415.t1
chr3.1 CDS 90337499 90337579 90337499 ID=cds.MS.gene014415.t1;Parent=MS.gene014415.t1
Gene Sequence

>MS.gene014415

ATGGATAGCTCTGATGATTCTGATTTTAATTTTGATGAGGATGGAGATAATGGGTATTCTAATTCTAGTGAAGACGATGAAAGTATAGAGTCTAGAGACCACGATGTCTCTGGTGATTACAATGAGAATTTGGATTCTTGTGTAATAGATGGTAGGTTTGTTAAGATTAATACCATGACGGCGGATGATATTATGAATCTTGATTTTGGTAGTGAAGAAGAAGCTTATGCCTTTTATCAAAAGTATGCAAAAAGCACCGGTTTCGTTGTTAGGAAAGATAAAGTGTACCGCAGCAAAGTTGGGAAACAAATTGTAATGCGACAGTTTGTGTGCAATAAAAATGGATTAAGAAGCAAAAAACACTTGACTAGGGTCAATAGGAAAAGAGAACATAGACCCCTCACCCGGAATAATTGTCCAGCTCGCCTTCGTATACGTTATAATCCAGAAAGCTTGAGATGGAGAGTGGTAATTTTTGAAGGGTGTCATAACCATGAACTAACCCCATCAAAATATATACATTTATTTCCTGCATATCGGGGATTGACGAACGCTGATAAAGCTCAAGTTGACAGTATGCAATCGTACGGTATCAAAACATGTCATATAATGGGGTACATGGTGGCAAACAAGGGTGGATATGATGCTGTTGGTTTTACGAAGAAAGATTTGTATAACTATTTTGGCAAGAAAATGGGTATTGATATTAAAGATGGTGATGTTGTTGCTTCTCTAAGCTATCTTCGGGGGAAGGCAGGCTTGGATCCTATGTTATATGTAAAATATGAGAAGGGTACCAATGGAAAATTGAAAAGATTGTTTTGGGCAGATGGATGGAGTCGAAATGATTTTTTGTGTTATGGCGATGTTATTGCATTTGATACCACATACAAAAAAAATAAATACAATCTTCCTTTGGTAATATTCTCTGGCTGCAACAACCATTCACAAACGATTATTTTTGGGGCTGCTTTGGTTTCAGATGAAACAATAGAGACATATACATGGGTGTTGAATTCATTTCTAGAAGCAATGGGAAATCGACAACCAAAAGCAGTAGTGACGGATGGTGACATGTCTATGAGGGACGCAGTAAAAGTTGTTTTTCCCGAAGCATTTCATAGACTGTGTGCCTGGCATTTGCACAAGAATGCTTATGAAAATGTTAAAAATAAAGAATTTTTGACAAATTTCAAGAAAGCAATGTACTCGGATTTCACCCCAGAGGAATTTGAAGAGTTTTGGGCAAGTGCTGTTGAGATGAGTGAGCTACAAGGTAACAATTGGGTTTCCAAAACATACGAGAACAAGAAATTATGGGCAACCGCATACTTTCGAGATAAGTTTTTTGGTCGCATACGGACAACCTCTCAGTGTGAAGCAATCAATTCAGTAGTCAAGAAATATGTCAGAAAGAAATGCAGCATTTATGAGTTCCTGCATAACTTTGACCACACATTGAGAGAGTATAGAAACAACGAACATGTTGCTGATTTTAAGAGTAATACCTCTGATCCGGTGTTGATAACTGGTCTGGATAATATTGAGAAAGATGCCGCAAAGATTTATACATCTGAGATATTCAAAAAAGTTAGAAAACACATTGTCAAGTCTTCTGCGTTAATTGTTCATGACCAATTGGATGTTGAAGATAAGTCAATGTTTAAGTTAAGCAAAACATGCAACGAAAAATATCGAAAAGAGGTTGTATACGACACTGCAGACTCTTCTTTTCACTGTGAATGTAGATTGTTTGAGTCTCGCGGATTTCCATGTTCTCATATTATTTTTGTCATGAAAGTAGTGCACATTGATCATATCCCAAGCAGTTTGATATTGAAAAGGTGGACTAAGAATGCTAAGATTCCAATAATGGGAACCAGTCATGGGAATGGAATGGATTCTAATATGATAGAGCTTGCTCGGTGTGGTGCATATTCAGCAGCATGTGATAGGTTTTGCAAAGTTGCAGCTGAAAGTGGGGCATGTTTTAATGATGTAATGGATGATATTTTGGAGCTTACCGAAAAGTATTCTAAACTAAAATTGGGAGGTGCTGTCAAGACACAAAATTCAGAAGGGAACAGACATATTGGTGATCCCGATGTTATACGATCTAAAGGGGCTCCAAAGAAGAAAACTTTTTCCATGAAGAGGTTTAGACACTGTTCAAATTGTACTGGTGCTAACCACAATGTTAGGACATGTCCCAAGCGTAATGGTGTCGATGGATCGCAAATCGACAGTGATGAGGAATCTGAGTCAGATGCTACAAAATTTAGCAATGCAGCAGATAATATTGTAAGTGTATCTGTCAAATTGTTTTTGTAAATCTGGTGTTATACCTTTTTTTTTAATGAATCATCATTTTTAACATCTTGTAGGACAAAGAAATGTCTAAAGGCGATTTAAACAACATCCATGGTTCCGTAAGATCAAGATTAACAGAACATGGAAGGCAAATTGATAAAGTGATTGAATCACTACCTTATCAACTTATGTGATTGTTATTTGCCAAAATTGTCTATAGTAATTTATCCTTTTATGTTTTTACAGAATGTGAAGGGAAGAAGTAATTCTAACCCGAAGCAGAAGAAGACAAAAGAGTTGAATGCAGTTAACCATCCTATTGGAAAGCAAATTGATAAAGTGAATAAATTATTGCCATATCAATTTACTTGATTTTTATTTGCCAAAATTGTCTTTAGTAATTCATCATTTTATGTTTTTACAAAATGTGAAGGGAGAAAGCAATTCTAATCTGAAGAAGAAGAAGAAGAAGTCAAAAGAGTTTAATGAAATTAGACATCCCGATGAAAGTCAAGCTATTATGTCCCAAGTGCAGCCAAATATACACCAAATGCACCATCCAATGCCTCCTTTTGTCAATTCAAGCCAAAGACTTCCTCCTACAAATGGTCAAACTCCTCCTATTTTGCAGCAACCACAACAGGTTTGTATTGTATAATATTACTTTGCTGTTATAATGTTAAATTTATGACAAATTTATCTAAAATTTGAAAATGTCATAATTTCAGAACGAAATAAACCATCCCATTGCAAGCCAACCTATGATGTCAACAGTGCAGCCAAATGTACACCAAATGCACTATCCAATGCATCCTTTTGCCAATTCTAGTCAAGTACTTCCTTCTATGTATTCTATAAATGGGCAAACTCCTCTTATTTTACAGCAACCACCACAGGTTTGTATTGTATAGTATATTAATGATTTTCTGCTATTATGTTAATTTTATGACATATGTGTATGAAATTTGAAAATGTCGTCATTTCAGAATGAAACAAACCATCTTGGAAGTCAACCTATGATGTCTCAAGTGCGACCAAATGTACACCAAATGCACTATCCAATGTATCATTTGGCTAATTCAAGCCAAGTACTTCCTCCTATTCATTCTATAAATGGCCAAACTACTCCTATTTTACAGCAACCACCACATGTGTGTATTATATAATATAGCATTGCTTATGCTGTTATTATGTCATTTTTATGACAAATTTATCTAAAATTTGAATATGTCATGATTTCAGTATTTTTTTGGAATGCCACGAACTACTAATGGCTCATCTTGTACTGACATGCTCCAACAAGTCATGAACAAAGGTCGTTAA
Protein sequence

>MS.gene014415.t1

MDSSDDSDFNFDEDGDNGYSNSSEDDESIESRDHDVSGDYNENLDSCVIDGRFVKINTMTADDIMNLDFGSEEEAYAFYQKYAKSTGFVVRKDKVYRSKVGKQIVMRQFVCNKNGLRSKKHLTRVNRKREHRPLTRNNCPARLRIRYNPESLRWRVVIFEGCHNHELTPSKYIHLFPAYRGLTNADKAQVDSMQSYGIKTCHIMGYMVANKGGYDAVGFTKKDLYNYFGKKMGIDIKDGDVVASLSYLRGKAGLDPIIYEFLHNFDHTLREYRNNEHVADFKSNTSDPVLITGLDNIEKDAAKIYTSEIFKKVRKHIVKSSALIVHDQLDVEDKSMFKLSKTCNEKYRKEVVYDTADSSFHCECRLFESRGFPCSHIIFVMKVVHIDHIPSSLILKRWTKNAKIPIMGTSHGNGMDSNMIELARCGAYSAACDRFCKVAAESGACFNDVMDDILELTEKYSKLKLGGAVKTQNSEGNRHIGDPDVIRSKGAPKKKTFSMKRFRHCSNCTGANHNVRTCPKRNGVDGSQIDSDEESESDATKFSNAADNIDKEMSKGDLNNIHGSVRSRLTEHGRQIDKNVKGRSNSNPKQKKTKELNAVNHPIGKQIDKGESNSNLKKKKKKSKEFNEIRHPDESQAIMSQVQPNIHQMHHPMPPFVNSSQRLPPTNGQTPPILQQPQQNEINHPIASQPMMSTVQPNVHQMHYPMHPFANSSQVLPSMYSINGQTPLILQQPPQNETNHLGSQPMMSQVRPNVHQMHYPMYHLANSSQVLPPIHSINGQTTPILQQPPHYFFGMPRTTNGSSCTDMLQQVMNKGR