AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014426

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014426.t1 MTR_7g074790 72.472 178 31 1 1 178 1 160 1.53e-83 260
MS.gene014426.t1 MTR_7g074790 81.081 74 13 1 490 563 157 229 7.24e-34 129
MS.gene014426.t1 MTR_5g039760 61.165 206 55 2 1 205 1 182 3.09e-81 253
MS.gene014426.t1 MTR_7g061980 66.387 119 40 0 1 119 1 119 2.19e-52 175
MS.gene014426.t1 MTR_0558s0020 33.582 268 155 6 3 250 32 296 1.25e-39 146
MS.gene014426.t1 MTR_6g051425 31.900 279 178 5 9 277 13 289 3.55e-38 144
MS.gene014426.t1 MTR_8g446020 31.600 250 145 6 3 250 31 256 3.67e-31 122
MS.gene014426.t1 MTR_0402s0040 41.989 181 100 4 10 187 26 204 8.63e-31 126
MS.gene014426.t1 MTR_6g090505 33.624 229 136 5 45 257 10 238 1.63e-28 117
MS.gene014426.t1 MTR_3g058090 52.212 113 33 1 367 479 15 106 6.82e-27 105
MS.gene014426.t1 MTR_4g102720 34.911 169 76 2 7 175 4 138 1.41e-26 108
MS.gene014426.t1 MTR_1g083640 27.984 243 152 6 3 225 47 286 6.08e-25 105
MS.gene014426.t1 MTR_1g070355 27.039 233 163 3 15 243 79 308 4.78e-23 103
MS.gene014426.t1 MTR_4g069880 58.824 68 28 0 1 68 1 68 3.93e-21 87.8
MS.gene014426.t1 MTR_4g035820 23.057 386 273 10 10 383 75 448 3.14e-18 89.0
MS.gene014426.t1 MTR_1g019850 33.566 143 82 4 3 141 63 196 1.27e-17 82.8
MS.gene014426.t1 MTR_5g015480 42.636 129 67 4 4 129 53 177 5.80e-17 81.6
MS.gene014426.t1 MTR_5g076070 25.328 229 166 3 13 238 56 282 9.50e-17 81.3
MS.gene014426.t1 MTR_0337s0040 27.751 209 128 4 11 217 37 224 1.98e-16 79.0
MS.gene014426.t1 MTR_2g099430 48.837 86 42 2 35 119 28 112 2.06e-16 75.9
MS.gene014426.t1 MTR_7g113010 41.732 127 58 5 10 134 457 569 1.98e-15 79.7
MS.gene014426.t1 MTR_7g446510 29.651 172 121 0 87 258 158 329 4.54e-15 77.0
MS.gene014426.t1 MTR_4g117620 70.588 51 13 2 512 562 29 77 1.86e-14 68.9
MS.gene014426.t1 MTR_1g013060 27.962 211 139 4 7 208 21 227 2.15e-14 73.2
MS.gene014426.t1 MTR_7g446520 26.872 227 151 3 14 240 92 303 2.28e-14 75.1
MS.gene014426.t1 MTR_2g014100 25.837 209 132 6 3 191 40 245 2.73e-14 73.6
MS.gene014426.t1 MTR_7g446480 29.651 172 121 0 87 258 143 314 5.24e-14 73.6
MS.gene014426.t1 MTR_2g070590 41.346 104 57 3 10 110 17 119 5.88e-13 66.2
MS.gene014426.t1 MTR_6g017200 45.783 83 43 2 10 91 58 139 6.47e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014426.t1 AT4G38180 35.561 374 234 5 6 375 69 439 1.38e-67 234
MS.gene014426.t1 AT4G15090 32.134 389 246 7 3 388 44 417 9.04e-61 215
MS.gene014426.t1 AT4G15090 32.134 389 246 7 3 388 44 417 9.04e-61 215
MS.gene014426.t1 AT4G15090 32.134 389 246 7 3 388 44 417 9.04e-61 215
MS.gene014426.t1 AT4G15090 32.134 389 246 7 3 388 44 417 9.04e-61 215
MS.gene014426.t1 AT4G15090 32.134 389 246 7 3 388 44 417 9.04e-61 215
MS.gene014426.t1 AT1G76320 31.806 371 235 8 14 379 1 358 7.10e-48 177
MS.gene014426.t1 AT1G76320 31.806 371 235 8 14 379 1 358 1.45e-47 177
MS.gene014426.t1 AT1G76320 31.806 371 235 8 14 379 1 358 1.45e-47 177
MS.gene014426.t1 AT1G76320 31.806 371 235 8 14 379 1 358 1.51e-47 177
MS.gene014426.t1 AT3G22170 29.787 376 227 6 3 364 63 415 6.77e-47 176
MS.gene014426.t1 AT3G22170 29.787 376 227 6 3 364 63 415 6.77e-47 176
MS.gene014426.t1 AT2G27110 30.978 368 226 6 9 376 48 387 9.53e-44 167
MS.gene014426.t1 AT2G27110 30.978 368 226 6 9 376 48 387 9.53e-44 167
MS.gene014426.t1 AT3G06250 29.551 379 212 9 9 380 189 519 1.11e-43 166
MS.gene014426.t1 AT3G06250 38.462 104 48 3 9 110 27 116 7.49e-11 65.5
MS.gene014426.t1 AT3G06250 29.551 379 212 9 9 380 189 519 1.11e-43 166
MS.gene014426.t1 AT3G06250 38.462 104 48 3 9 110 27 116 7.49e-11 65.5
MS.gene014426.t1 AT3G06250 29.551 379 212 9 9 380 189 519 1.11e-43 166
MS.gene014426.t1 AT3G06250 38.462 104 48 3 9 110 27 116 7.49e-11 65.5
MS.gene014426.t1 AT5G18960 28.232 379 220 10 9 380 210 543 1.68e-37 148
MS.gene014426.t1 AT5G18960 39.423 104 47 3 9 110 42 131 1.72e-11 67.8
MS.gene014426.t1 AT5G18960 28.232 379 220 10 9 380 210 543 1.68e-37 148
MS.gene014426.t1 AT5G18960 39.423 104 47 3 9 110 42 131 1.72e-11 67.8
MS.gene014426.t1 AT2G27110 36.364 209 131 1 168 376 36 242 7.43e-36 143
MS.gene014426.t1 AT4G19990 25.806 372 221 6 13 367 24 357 9.96e-36 142
MS.gene014426.t1 AT4G19990 25.806 372 221 6 13 367 24 357 9.96e-36 142
MS.gene014426.t1 AT4G19990 25.806 372 221 6 13 367 24 357 1.01e-35 143
MS.gene014426.t1 AT4G19990 25.806 372 221 6 13 367 24 357 1.01e-35 143
MS.gene014426.t1 AT4G19990 25.806 372 221 6 13 367 24 357 1.11e-35 142
MS.gene014426.t1 AT4G19990 25.806 372 221 6 13 367 38 371 1.12e-35 142
MS.gene014426.t1 AT1G10240 27.174 368 254 7 10 367 48 411 1.36e-34 139
MS.gene014426.t1 AT1G10240 27.174 368 254 7 10 367 48 411 1.36e-34 139
MS.gene014426.t1 AT2G32250 26.536 358 217 6 11 366 39 352 3.57e-33 135
MS.gene014426.t1 AT1G52520 25.729 377 253 10 10 379 85 441 3.93e-33 135
MS.gene014426.t1 AT2G32250 26.536 358 217 6 11 366 39 352 6.52e-33 134
MS.gene014426.t1 AT2G32250 26.536 358 217 6 11 366 39 352 6.52e-33 134
MS.gene014426.t1 AT2G32250 26.536 358 217 6 11 366 39 352 6.67e-33 134
MS.gene014426.t1 AT2G32250 26.536 358 217 6 11 366 39 352 6.67e-33 134
MS.gene014426.t1 AT2G32250 26.536 358 217 6 11 366 39 352 6.67e-33 134
MS.gene014426.t1 AT1G80010 25.272 368 259 6 10 368 95 455 5.30e-32 131
MS.gene014426.t1 AT2G32250 26.197 355 216 6 14 366 1 311 5.96e-32 131
MS.gene014426.t1 AT2G32250 26.197 355 216 6 14 366 1 311 6.55e-32 131
MS.gene014426.t1 AT4G19990 25.595 336 196 5 48 367 3 300 1.14e-31 130
MS.gene014426.t1 AT5G28530 24.850 334 233 4 8 325 53 384 2.34e-30 126
MS.gene014426.t1 AT5G28530 24.850 334 233 4 8 325 53 384 2.34e-30 126
MS.gene014426.t1 AT5G28530 24.850 334 233 4 8 325 53 384 2.72e-30 126
MS.gene014426.t1 AT4G38170 32.000 175 114 2 190 363 24 194 2.33e-24 107
MS.gene014426.t1 AT5G28530 21.964 387 228 10 8 388 53 371 2.09e-17 86.3
MS.gene014426.t1 AT5G28530 21.447 387 230 9 8 388 53 371 2.18e-17 86.3

Find 91 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACAATTCCATCATTTAAA+TGG 0.223041 3.1:-90234775 MS.gene014426:CDS
TGGAAGAGGCTGAACAATTT+TGG 0.228865 3.1:-90235534 MS.gene014426:CDS
ATTACACTTTCACGTCAAAA+TGG 0.279218 3.1:-90235328 MS.gene014426:CDS
TGGAATGAAATTTGATACTA+TGG 0.288067 3.1:-90235554 MS.gene014426:CDS
TGATGATGTTACAAATATTC+AGG 0.293363 3.1:-90233196 MS.gene014426:CDS
AACAAATTACAAACGTGTTC+TGG 0.334571 3.1:-90234958 MS.gene014426:CDS
ATGGCTGATGACTCTGGATT+AGG 0.348989 3.1:-90235187 MS.gene014426:CDS
AAATGATCGTACCTCTATAA+TGG 0.360454 3.1:+90234822 None:intergenic
GCATGTTTCTTGAATCCCTT+TGG 0.367868 3.1:+90233636 None:intergenic
GGAATTAAACATCTTGGAAA+TGG 0.370237 3.1:-90234608 MS.gene014426:CDS
TGACATCTTCAAATGTTGAT+TGG 0.374678 3.1:-90235588 MS.gene014426:CDS
CAGAATGGAATTAAACATCT+TGG 0.376869 3.1:-90234614 MS.gene014426:CDS
CTAGTTTGAGCATGTTTACT+TGG 0.384506 3.1:+90233546 None:intergenic
TGGCTGATGACTCTGGATTA+GGG 0.390441 3.1:-90235186 MS.gene014426:CDS
TCAAATTTCATTCCAAGTCT+TGG 0.395389 3.1:+90235562 None:intergenic
TTATGTCGCTTAGTTCCCTT+TGG 0.401911 3.1:+90233609 None:intergenic
CCCTAGACATTGCTTGACTT+TGG 0.402723 3.1:+90234693 None:intergenic
TCAAACAACCATTTAAATGA+TGG 0.407895 3.1:+90234767 None:intergenic
TGGTCAGTGAAGATCGTCTT+TGG 0.409022 3.1:+90234713 None:intergenic
TATACCTGTGAATTTCTTTG+AGG 0.409803 3.1:+90233513 None:intergenic
TATAAAATTAACAACTCAAA+TGG 0.424095 3.1:-90233413 MS.gene014426:CDS
CTTCTTAAAATATACTTCTC+AGG 0.433030 3.1:+90233927 None:intergenic
GTATTTCCAACAGCAATTGT+TGG 0.433256 3.1:-90235023 MS.gene014426:CDS
TGTCTAGAAATCGAATGTTC+AGG 0.434178 3.1:-90233833 MS.gene014426:CDS
ATCTTGCACAATGCCATAAC+GGG 0.434412 3.1:+90233890 None:intergenic
ATGTAGGTTTGTTTGTTGTA+AGG 0.436082 3.1:-90235434 MS.gene014426:CDS
ACAAGCAAATGAGATTGATA+TGG 0.437582 3.1:-90235206 MS.gene014426:CDS
TTAACAACTCAAATGGTTGA+TGG 0.439086 3.1:-90233406 MS.gene014426:CDS
CCGTTCTAGACTCGGCTCTC+CGG 0.443682 3.1:+90235365 None:intergenic
TCTGGTTTCAACCATTATAG+AGG 0.443875 3.1:-90234833 MS.gene014426:CDS
ATTGATATGGCTGATGACTC+TGG 0.443968 3.1:-90235193 MS.gene014426:CDS
ACCTGTGAATTTCTTTGAGG+TGG 0.445591 3.1:+90233516 None:intergenic
AAAGGAGGTTCTTTGCTAAG+AGG 0.453456 3.1:-90234578 MS.gene014426:CDS
CATAAACCATGGTGAGTCTC+AGG 0.455966 3.1:+90234653 None:intergenic
ATTCGATTTCTAGACAACTT+AGG 0.457251 3.1:+90233840 None:intergenic
ACATGTCCTCACGTGCTAGC+GGG 0.469336 3.1:+90233350 None:intergenic
CCTGTGAATTTCTTTGAGGT+GGG 0.471695 3.1:+90233517 None:intergenic
AATCTTGCACAATGCCATAA+CGG 0.484556 3.1:+90233889 None:intergenic
GTTTGAGCATGTTTACTTGG+AGG 0.485005 3.1:+90233549 None:intergenic
AGGTTTGTTTGTTGTAAGGA+AGG 0.486878 3.1:-90235430 MS.gene014426:CDS
TGTCGCTTAGTTCCCTTTGG+AGG 0.489630 3.1:+90233612 None:intergenic
TGGACAAGAGAAGCCCGTTA+TGG 0.496786 3.1:-90233903 MS.gene014426:CDS
GTTGATTGGAAGCCAAGACT+TGG 0.497681 3.1:-90235574 MS.gene014426:CDS
CTTGGAAATGGAATGAAGAA+AGG 0.500755 3.1:-90234596 MS.gene014426:CDS
CATGTCCTCACGTGCTAGCG+GGG 0.504056 3.1:+90233351 None:intergenic
CTGGTCATCCATGAGTTTGA+AGG 0.505313 3.1:-90235301 MS.gene014426:CDS
CTTCTTTCATGCATATCAGA+TGG 0.507819 3.1:-90234990 MS.gene014426:CDS
TGAGAAAGCTTGGTTTGACT+TGG 0.510934 3.1:-90234513 MS.gene014426:intron
TAGTTACACAACTATGATGA+TGG 0.512138 3.1:-90233323 MS.gene014426:intron
ACCAAAGTCAAGCAATGTCT+AGG 0.513361 3.1:-90234694 MS.gene014426:CDS
GATTCTCCAACAATTGCTGT+TGG 0.523496 3.1:+90235017 None:intergenic
GAAATTTGATACTATGGAAG+AGG 0.525500 3.1:-90235548 MS.gene014426:CDS
TTCACGTCAAAATGGAAAGC+TGG 0.527122 3.1:-90235320 MS.gene014426:CDS
TTCTGATGCTATACAACCAA+AGG 0.531212 3.1:-90233652 MS.gene014426:CDS
AGCATGGTGTATGGCGACGC+TGG 0.534307 3.1:-90235058 MS.gene014426:CDS
CAACTTATGAGCACACATGC+AGG 0.537532 3.1:-90235148 MS.gene014426:CDS
AAGAAACATGCTCCTCCAAA+GGG 0.539093 3.1:-90233624 MS.gene014426:CDS
TAAGCAATCCGTTCTAGACT+CGG 0.542410 3.1:+90235357 None:intergenic
CAAGAAACATGCTCCTCCAA+AGG 0.544628 3.1:-90233625 MS.gene014426:CDS
CATCTGATATGCATGAAAGA+AGG 0.546601 3.1:+90234991 None:intergenic
CTGTGAATTTCTTTGAGGTG+GGG 0.560693 3.1:+90233518 None:intergenic
CTCACCATGGTTTATGCACA+TGG 0.561626 3.1:-90234646 MS.gene014426:CDS
AAGTGGTCTATTGGCATCGT+TGG 0.563557 3.1:+90234865 None:intergenic
CCGGAGAGCCGAGTCTAGAA+CGG 0.566334 3.1:-90235365 MS.gene014426:CDS
CGAAATGTTCAAGAAAGCAA+TGG 0.571716 3.1:-90233727 MS.gene014426:CDS
ACACAAGCTATAGAAAATGA+TGG 0.577177 3.1:-90233696 MS.gene014426:CDS
CCCACCTCAAAGAAATTCAC+AGG 0.578108 3.1:-90233517 MS.gene014426:intron
TTCTATGTGATCGAAGCATG+TGG 0.582014 3.1:+90235242 None:intergenic
GCAGGGCATAGAGCTAATGT+TGG 0.592621 3.1:-90235130 MS.gene014426:CDS
AACTTATGAGCACACATGCA+GGG 0.596381 3.1:-90235147 MS.gene014426:CDS
CCAAAGTCAAGCAATGTCTA+GGG 0.598556 3.1:-90234693 MS.gene014426:CDS
TCTGATGCTATACAACCAAA+GGG 0.598723 3.1:-90233651 MS.gene014426:CDS
TGTTTCTAAGTTCATTAGAG+CGG 0.599783 3.1:-90233805 MS.gene014426:CDS
GCATCAGAACTCACAAATGA+CGG 0.601171 3.1:+90233666 None:intergenic
ACGGCGATGTATCGTCATGT+AGG 0.604688 3.1:-90235450 MS.gene014426:CDS
AACATGTCCTCACGTGCTAG+CGG 0.607345 3.1:+90233349 None:intergenic
TGACTCTGGATTAGGGCAGA+AGG 0.608129 3.1:-90235179 MS.gene014426:CDS
TTTGTTGTAAGGAAGGACTA+CGG 0.614427 3.1:-90235423 MS.gene014426:CDS
GGCATCGTTGGTACAATATG+TGG 0.617702 3.1:+90234877 None:intergenic
ACATGGCACTTGTTGCAGAA+TGG 0.627403 3.1:-90234629 MS.gene014426:CDS
ATGTCCTCACGTGCTAGCGG+GGG 0.629467 3.1:+90233352 None:intergenic
GGAAATGGAATGAAGAAAGG+AGG 0.638695 3.1:-90234593 MS.gene014426:CDS
TGATATGCATGAAAGAAGGA+CGG 0.649185 3.1:+90234995 None:intergenic
CACTATTATCAAGAAGCATG+AGG 0.669252 3.1:+90233754 None:intergenic
TCTATGTGATCGAAGCATGT+GGG 0.671774 3.1:+90235243 None:intergenic
ATATTTGTAACATCATCAAG+AGG 0.673556 3.1:+90233201 None:intergenic
GGGCTCATAAGTTGGAGGCG+CGG 0.683549 3.1:+90233372 None:intergenic
TAATGTTGGATATACAGAAG+TGG 0.683641 3.1:-90235116 MS.gene014426:CDS
TTTACAAACAAGAACAAACA+CGG 0.696353 3.1:-90235469 MS.gene014426:CDS
GTGATGCCTGAGACTCACCA+TGG 0.716138 3.1:-90234659 MS.gene014426:CDS
AGTGCCATGTGCATAAACCA+TGG 0.773388 3.1:+90234642 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAATAATTAATATCC+AGG + chr3.1:90235507-90235526 None:intergenic 10.0%
!!! TTATTTCTTATTATTAATGT+AGG - chr3.1:90235548-90235567 MS.gene014426:CDS 10.0%
!! ATAATCTTCACAATAATAAT+TGG - chr3.1:90234293-90234312 MS.gene014426:intron 15.0%
!! TATAAAATTAACAACTCAAA+TGG - chr3.1:90235361-90235380 MS.gene014426:CDS 15.0%
!! TTATGCCATTAAAAAAAAAT+GGG - chr3.1:90234327-90234346 MS.gene014426:intron 15.0%
!! TTTATGCCATTAAAAAAAAA+TGG - chr3.1:90234326-90234345 MS.gene014426:intron 15.0%
!!! TAGTTTTACATAATCATTTT+AGG - chr3.1:90235337-90235356 MS.gene014426:CDS 15.0%
!!! AATTTCATATCATTTTCATG+AGG - chr3.1:90235475-90235494 MS.gene014426:CDS 20.0%
! AGACAATTCCATCATTTAAA+TGG - chr3.1:90233999-90234018 MS.gene014426:intron 25.0%
! ATATTTGTAACATCATCAAG+AGG + chr3.1:90235576-90235595 None:intergenic 25.0%
! CAAAATGTTTGAAGAATTGT+AGG + chr3.1:90234459-90234478 None:intergenic 25.0%
! CTTCTTAAAATATACTTCTC+AGG + chr3.1:90234850-90234869 None:intergenic 25.0%
! GAGAAAAAATATGCATATGA+AGG - chr3.1:90233380-90233399 MS.gene014426:CDS 25.0%
! GTTTGAATTGAATGATGTTA+AGG - chr3.1:90234819-90234838 MS.gene014426:CDS 25.0%
! TACAAAAAGAAAAAGAAGCA+TGG - chr3.1:90233700-90233719 MS.gene014426:CDS 25.0%
! TCAAACAACCATTTAAATGA+TGG + chr3.1:90234010-90234029 None:intergenic 25.0%
! TGGAATGAAATTTGATACTA+TGG - chr3.1:90233220-90233239 MS.gene014426:intron 25.0%
! TGTAAGATGTATGTTACATT+TGG - chr3.1:90234769-90234788 MS.gene014426:CDS 25.0%
! TTTACAAACAAGAACAAACA+CGG - chr3.1:90233305-90233324 MS.gene014426:intron 25.0%
!! CAAAAATGATTTTGGATTAC+GGG - chr3.1:90233846-90233865 MS.gene014426:CDS 25.0%
!! GCAAAAATGATTTTGGATTA+CGG - chr3.1:90233845-90233864 MS.gene014426:CDS 25.0%
!! TGATGATGTTACAAATATTC+AGG - chr3.1:90235578-90235597 MS.gene014426:CDS 25.0%
!!! AGAAGTATATTTTAAGAAGG+TGG - chr3.1:90234851-90234870 MS.gene014426:CDS 25.0%
!!! CTGAGAAGTATATTTTAAGA+AGG - chr3.1:90234848-90234867 MS.gene014426:CDS 25.0%
AAAAAAAGCAAGTGGTCTAT+TGG + chr3.1:90233921-90233940 None:intergenic 30.0%
AAACCAGAAAAAAAAGCAAG+TGG + chr3.1:90233929-90233948 None:intergenic 30.0%
AAATGATCGTACCTCTATAA+TGG + chr3.1:90233955-90233974 None:intergenic 30.0%
AACAAATTACAAACGTGTTC+TGG - chr3.1:90233816-90233835 MS.gene014426:CDS 30.0%
AATACTAATCCAAATGGGAA+AGG - chr3.1:90234570-90234589 MS.gene014426:CDS 30.0%
AATTGTAGGATACCCAAATT+CGG + chr3.1:90234445-90234464 None:intergenic 30.0%
ACAAGCAAATGAGATTGATA+TGG - chr3.1:90233568-90233587 MS.gene014426:CDS 30.0%
ACACAAGCTATAGAAAATGA+TGG - chr3.1:90235078-90235097 MS.gene014426:CDS 30.0%
ATCACTAAGGAAAATCATGA+AGG - chr3.1:90234697-90234716 MS.gene014426:CDS 30.0%
ATGCATATGAAGGAAAAATC+CGG - chr3.1:90233390-90233409 MS.gene014426:CDS 30.0%
ATTACACTTTCACGTCAAAA+TGG - chr3.1:90233446-90233465 MS.gene014426:intron 30.0%
CAGAATGGAATTAAACATCT+TGG - chr3.1:90234160-90234179 MS.gene014426:intron 30.0%
CATCTTACAACTACAAGTAA+TGG + chr3.1:90234758-90234777 None:intergenic 30.0%
GAAATTTGATACTATGGAAG+AGG - chr3.1:90233226-90233245 MS.gene014426:intron 30.0%
GGAATTAAACATCTTGGAAA+TGG - chr3.1:90234166-90234185 MS.gene014426:intron 30.0%
TAATGTTGGATATACAGAAG+TGG - chr3.1:90233658-90233677 MS.gene014426:CDS 30.0%
TAGTTACACAACTATGATGA+TGG - chr3.1:90235451-90235470 MS.gene014426:CDS 30.0%
TATACCTGTGAATTTCTTTG+AGG + chr3.1:90235264-90235283 None:intergenic 30.0%
TCAAATTTCATTCCAAGTCT+TGG + chr3.1:90233215-90233234 None:intergenic 30.0%
TCACCAATACTAATCCAAAT+GGG - chr3.1:90234565-90234584 MS.gene014426:CDS 30.0%
TGACATCTTCAAATGTTGAT+TGG - chr3.1:90233186-90233205 MS.gene014426:CDS 30.0%
TTAACAACTCAAATGGTTGA+TGG - chr3.1:90235368-90235387 MS.gene014426:CDS 30.0%
TTCACCAATACTAATCCAAA+TGG - chr3.1:90234564-90234583 MS.gene014426:CDS 30.0%
TTGTGAATATGTCATCACTA+AGG - chr3.1:90234684-90234703 MS.gene014426:CDS 30.0%
! ATTCGATTTCTAGACAACTT+AGG + chr3.1:90234937-90234956 None:intergenic 30.0%
! ATTTTGGATTACGGGTATTT+TGG - chr3.1:90233854-90233873 MS.gene014426:CDS 30.0%
! GTGTGATGCAAAAATGATTT+TGG - chr3.1:90233838-90233857 MS.gene014426:CDS 30.0%
! TATGTTTTCCTTCAAACTCA+TGG + chr3.1:90233484-90233503 None:intergenic 30.0%
! TGTTTCTAAGTTCATTAGAG+CGG - chr3.1:90234969-90234988 MS.gene014426:CDS 30.0%
!! ATGTAGGTTTGTTTGTTGTA+AGG - chr3.1:90233340-90233359 MS.gene014426:CDS 30.0%
!! TATAGAGGTACGATCATTTT+TGG - chr3.1:90233956-90233975 MS.gene014426:intron 30.0%
!! TTTCCCATTTGGATTAGTAT+TGG + chr3.1:90234571-90234590 None:intergenic 30.0%
!!! TGCAGCCCATTTTTTTTTAA+TGG + chr3.1:90234335-90234354 None:intergenic 30.0%
!!! TTTTGGTGATGTTGTTTCAT+TGG - chr3.1:90233871-90233890 MS.gene014426:CDS 30.0%
AATCTTGCACAATGCCATAA+CGG + chr3.1:90234888-90234907 None:intergenic 35.0%
AGGAAAATCATGAAGGATCT+TGG - chr3.1:90234704-90234723 MS.gene014426:CDS 35.0%
CATCTGATATGCATGAAAGA+AGG + chr3.1:90233786-90233805 None:intergenic 35.0%
CGAAATGTTCAAGAAAGCAA+TGG - chr3.1:90235047-90235066 MS.gene014426:CDS 35.0%
CTAGTTTGAGCATGTTTACT+TGG + chr3.1:90235231-90235250 None:intergenic 35.0%
CTTCTTTCATGCATATCAGA+TGG - chr3.1:90233784-90233803 MS.gene014426:CDS 35.0%
CTTGGAAATGGAATGAAGAA+AGG - chr3.1:90234178-90234197 MS.gene014426:intron 35.0%
GTATTTCCAACAGCAATTGT+TGG - chr3.1:90233751-90233770 MS.gene014426:CDS 35.0%
TCTGATGCTATACAACCAAA+GGG - chr3.1:90235123-90235142 MS.gene014426:CDS 35.0%
TGATATGCATGAAAGAAGGA+CGG + chr3.1:90233782-90233801 None:intergenic 35.0%
TGTCTAGAAATCGAATGTTC+AGG - chr3.1:90234941-90234960 MS.gene014426:CDS 35.0%
TTCTGATGCTATACAACCAA+AGG - chr3.1:90235122-90235141 MS.gene014426:CDS 35.0%
! AGAAAAAGAAGCATGGTGTA+TGG - chr3.1:90233707-90233726 MS.gene014426:CDS 35.0%
! AGTTTGTCTGAAACCGAATT+TGG - chr3.1:90234429-90234448 MS.gene014426:intron 35.0%
! ATGGCATTGTGCAAGATTTT+AGG - chr3.1:90234890-90234909 MS.gene014426:CDS 35.0%
! CACTATTATCAAGAAGCATG+AGG + chr3.1:90235023-90235042 None:intergenic 35.0%
! GTTTGTCTGAAACCGAATTT+GGG - chr3.1:90234430-90234449 MS.gene014426:intron 35.0%
! TCTGGTTTCAACCATTATAG+AGG - chr3.1:90233941-90233960 MS.gene014426:intron 35.0%
! TGGCATTGTGCAAGATTTTA+GGG - chr3.1:90234891-90234910 MS.gene014426:CDS 35.0%
! TTTGTTGTAAGGAAGGACTA+CGG - chr3.1:90233351-90233370 MS.gene014426:CDS 35.0%
!! AAGCAGATTTTGAGAAAGCT+TGG - chr3.1:90234251-90234270 MS.gene014426:intron 35.0%
!! AGGTTTGTTTGTTGTAAGGA+AGG - chr3.1:90233344-90233363 MS.gene014426:CDS 35.0%
!! TCTCTCGTTTTAGTAGATCA+TGG + chr3.1:90233508-90233527 None:intergenic 35.0%
!!! AGACCACTTGCTTTTTTTTC+TGG - chr3.1:90233923-90233942 MS.gene014426:CDS 35.0%
!!! GAACAATTTTGGCTTGCTTA+CGG - chr3.1:90233251-90233270 MS.gene014426:intron 35.0%
AAAGGAGGTTCTTTGCTAAG+AGG - chr3.1:90234196-90234215 MS.gene014426:intron 40.0%
AACTTATGAGCACACATGCA+GGG - chr3.1:90233627-90233646 MS.gene014426:CDS 40.0%
AAGAAACATGCTCCTCCAAA+GGG - chr3.1:90235150-90235169 MS.gene014426:CDS 40.0%
ACCAAAGTCAAGCAATGTCT+AGG - chr3.1:90234080-90234099 MS.gene014426:intron 40.0%
ATCTTGCACAATGCCATAAC+GGG + chr3.1:90234887-90234906 None:intergenic 40.0%
ATTGATATGGCTGATGACTC+TGG - chr3.1:90233581-90233600 MS.gene014426:CDS 40.0%
CCAAAGTCAAGCAATGTCTA+GGG - chr3.1:90234081-90234100 MS.gene014426:intron 40.0%
GAGTCAGATTCATGTCTAGT+TGG + chr3.1:90234661-90234680 None:intergenic 40.0%
GATTCTCCAACAATTGCTGT+TGG + chr3.1:90233760-90233779 None:intergenic 40.0%
GCATCAGAACTCACAAATGA+CGG + chr3.1:90235111-90235130 None:intergenic 40.0%
GCATGTTTCTTGAATCCCTT+TGG + chr3.1:90235141-90235160 None:intergenic 40.0%
GGAAATGGAATGAAGAAAGG+AGG - chr3.1:90234181-90234200 MS.gene014426:intron 40.0%
GTGTGTATACCTTTCCCATT+TGG + chr3.1:90234582-90234601 None:intergenic 40.0%
GTTTGAGCATGTTTACTTGG+AGG + chr3.1:90235228-90235247 None:intergenic 40.0%
TAACCTTGCAAGCTTATGTG+AGG + chr3.1:90234533-90234552 None:intergenic 40.0%
TCTATGTGATCGAAGCATGT+GGG + chr3.1:90233534-90233553 None:intergenic 40.0%
TTCACGTCAAAATGGAAAGC+TGG - chr3.1:90233454-90233473 MS.gene014426:intron 40.0%
TTCTATGTGATCGAAGCATG+TGG + chr3.1:90233535-90233554 None:intergenic 40.0%
! ACCTGTGAATTTCTTTGAGG+TGG + chr3.1:90235261-90235280 None:intergenic 40.0%
! ATGGGCTGCATGTTATATGA+AGG - chr3.1:90234345-90234364 MS.gene014426:intron 40.0%
! ATTTTCATGAGGAACTGTCC+TGG - chr3.1:90235486-90235505 MS.gene014426:CDS 40.0%
! GGCATTGTGCAAGATTTTAG+GGG - chr3.1:90234892-90234911 MS.gene014426:CDS 40.0%
! TAAGCAATCCGTTCTAGACT+CGG + chr3.1:90233420-90233439 None:intergenic 40.0%
! TGAGAAAGCTTGGTTTGACT+TGG - chr3.1:90234261-90234280 MS.gene014426:intron 40.0%
! TGGAAGAGGCTGAACAATTT+TGG - chr3.1:90233240-90233259 MS.gene014426:intron 40.0%
! TTATGTCGCTTAGTTCCCTT+TGG + chr3.1:90235168-90235187 None:intergenic 40.0%
!! ATGAAGGAAGCATTGACACT+TGG - chr3.1:90234361-90234380 MS.gene014426:intron 40.0%
!! CCTGTGAATTTCTTTGAGGT+GGG + chr3.1:90235260-90235279 None:intergenic 40.0%
!! CTGTGAATTTCTTTGAGGTG+GGG + chr3.1:90235259-90235278 None:intergenic 40.0%
!! TGTGCAAGATTTTAGGGGAA+AGG - chr3.1:90234897-90234916 MS.gene014426:CDS 40.0%
AAGTGGTCTATTGGCATCGT+TGG + chr3.1:90233912-90233931 None:intergenic 45.0%
AGTCCTCACATAAGCTTGCA+AGG - chr3.1:90234527-90234546 MS.gene014426:CDS 45.0%
AGTGCCATGTGCATAAACCA+TGG + chr3.1:90234135-90234154 None:intergenic 45.0%
ATGGCTGATGACTCTGGATT+AGG - chr3.1:90233587-90233606 MS.gene014426:CDS 45.0%
CAACTTATGAGCACACATGC+AGG - chr3.1:90233626-90233645 MS.gene014426:CDS 45.0%
CAAGAAACATGCTCCTCCAA+AGG - chr3.1:90235149-90235168 MS.gene014426:CDS 45.0%
CATAAACCATGGTGAGTCTC+AGG + chr3.1:90234124-90234143 None:intergenic 45.0%
CCCACCTCAAAGAAATTCAC+AGG - chr3.1:90235257-90235276 MS.gene014426:CDS 45.0%
CCCTAGACATTGCTTGACTT+TGG + chr3.1:90234084-90234103 None:intergenic 45.0%
CTCACCATGGTTTATGCACA+TGG - chr3.1:90234128-90234147 MS.gene014426:intron 45.0%
CTGGTCATCCATGAGTTTGA+AGG - chr3.1:90233473-90233492 MS.gene014426:intron 45.0%
GGCATCGTTGGTACAATATG+TGG + chr3.1:90233900-90233919 None:intergenic 45.0%
GTTGATTGGAAGCCAAGACT+TGG - chr3.1:90233200-90233219 MS.gene014426:CDS 45.0%
TGGCTGATGACTCTGGATTA+GGG - chr3.1:90233588-90233607 MS.gene014426:CDS 45.0%
TGGTCAGTGAAGATCGTCTT+TGG + chr3.1:90234064-90234083 None:intergenic 45.0%
! ACATGGCACTTGTTGCAGAA+TGG - chr3.1:90234145-90234164 MS.gene014426:intron 45.0%
! CTTGCTTACGGTTTTCGTGA+GGG - chr3.1:90233263-90233282 MS.gene014426:intron 45.0%
! TTTTCTTAGGCTGACGCTCA+AGG + chr3.1:90235197-90235216 None:intergenic 45.0%
!! GCAAGATTTTAGGGGAAAGG+AGG - chr3.1:90234900-90234919 MS.gene014426:CDS 45.0%
!!! GGAGGAGCACTTCTTTTCTT+AGG + chr3.1:90235210-90235229 None:intergenic 45.0%
AACATGTCCTCACGTGCTAG+CGG + chr3.1:90235428-90235447 None:intergenic 50.0%
ACGGCGATGTATCGTCATGT+AGG - chr3.1:90233324-90233343 MS.gene014426:CDS 50.0%
GCAGGGCATAGAGCTAATGT+TGG - chr3.1:90233644-90233663 MS.gene014426:CDS 50.0%
TGGACAAGAGAAGCCCGTTA+TGG - chr3.1:90234871-90234890 MS.gene014426:CDS 50.0%
! GCTTGCTTACGGTTTTCGTG+AGG - chr3.1:90233262-90233281 MS.gene014426:intron 50.0%
! TACGGTTTTCGTGAGGGCTT+CGG - chr3.1:90233269-90233288 MS.gene014426:intron 50.0%
! TGACTCTGGATTAGGGCAGA+AGG - chr3.1:90233595-90233614 MS.gene014426:CDS 50.0%
! TGTCGCTTAGTTCCCTTTGG+AGG + chr3.1:90235165-90235184 None:intergenic 50.0%
ACATGTCCTCACGTGCTAGC+GGG + chr3.1:90235427-90235446 None:intergenic 55.0%
GTGATGCCTGAGACTCACCA+TGG - chr3.1:90234115-90234134 MS.gene014426:intron 55.0%
AGCATGGTGTATGGCGACGC+TGG - chr3.1:90233716-90233735 MS.gene014426:CDS 60.0%
ATGTCCTCACGTGCTAGCGG+GGG + chr3.1:90235425-90235444 None:intergenic 60.0%
CATGTCCTCACGTGCTAGCG+GGG + chr3.1:90235426-90235445 None:intergenic 60.0%
CCGGAGAGCCGAGTCTAGAA+CGG - chr3.1:90233409-90233428 MS.gene014426:CDS 60.0%
GCTAGCGGGGGCTCATAAGT+TGG + chr3.1:90235413-90235432 None:intergenic 60.0%
! AGCGGGGGCTCATAAGTTGG+AGG + chr3.1:90235410-90235429 None:intergenic 60.0%
! CCGTTCTAGACTCGGCTCTC+CGG + chr3.1:90233412-90233431 None:intergenic 60.0%
! GGGCTCATAAGTTGGAGGCG+CGG + chr3.1:90235405-90235424 None:intergenic 60.0%
TGAGCCCCCGCTAGCACGTG+AGG - chr3.1:90235418-90235437 MS.gene014426:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 90233185 90235611 90233185 ID=MS.gene014426
chr3.1 mRNA 90233185 90235611 90233185 ID=MS.gene014426.t1;Parent=MS.gene014426
chr3.1 exon 90234514 90235611 90234514 ID=MS.gene014426.t1.exon1;Parent=MS.gene014426.t1
chr3.1 CDS 90234514 90235611 90234514 ID=cds.MS.gene014426.t1;Parent=MS.gene014426.t1
chr3.1 exon 90233518 90233955 90233518 ID=MS.gene014426.t1.exon2;Parent=MS.gene014426.t1
chr3.1 CDS 90233518 90233955 90233518 ID=cds.MS.gene014426.t1;Parent=MS.gene014426.t1
chr3.1 exon 90233324 90233437 90233324 ID=MS.gene014426.t1.exon3;Parent=MS.gene014426.t1
chr3.1 CDS 90233324 90233437 90233324 ID=cds.MS.gene014426.t1;Parent=MS.gene014426.t1
chr3.1 exon 90233185 90233226 90233185 ID=MS.gene014426.t1.exon4;Parent=MS.gene014426.t1
chr3.1 CDS 90233185 90233226 90233185 ID=cds.MS.gene014426.t1;Parent=MS.gene014426.t1
Gene Sequence

>MS.gene014426

ATGACATCTTCAAATGTTGATTGGAAGCCAAGACTTGGAATGAAATTTGATACTATGGAAGAGGCTGAACAATTTTGGCTTGCTTACGGTTTTCGTGAGGGCTTCGGAGTTAGAATACGTTTTACAAACAAGAACAAACACGGCGATGTATCGTCATGTAGGTTTGTTTGTTGTAAGGAAGGACTACGGAAGAAAGAGAAAAAATATGCATATGAAGGAAAAATCCGGAGAGCCGAGTCTAGAACGGATTGCTTAGCAAGAATTACACTTTCACGTCAAAATGGAAAGCTGGTCATCCATGAGTTTGAAGGAAAACATAACCATGATCTACTAAAACGAGAGACAACCCACATGCTTCGATCACATAGAAAGATAACTGAAGTACAAGCAAATGAGATTGATATGGCTGATGACTCTGGATTAGGGCAGAAGGCAACTTATCAACTTATGAGCACACATGCAGGGCATAGAGCTAATGTTGGATATACAGAAGTGGATGTAAGAAACTACATCACTACAAAAAGAAAAAGAAGCATGGTGTATGGCGACGCTGGATATCTTTCACAGTATTTCCAACAGCAATTGTTGGAGAATCCGTCCTTCTTTCATGCATATCAGATGGATATAGATGAACAAATTACAAACGTGTTCTGGTGTGATGCAAAAATGATTTTGGATTACGGGTATTTTGGTGATGTTGTTTCATTGGACACCACATATTGTACCAACGATGCCAATAGACCACTTGCTTTTTTTTCTGGTTTCAACCATTATAGAGGTACGATCATTTTTGGTGCAGCTCTAATGTATGATGAGACAATTCCATCATTTAAATGGTTGTTTGAAACATTCTTACAAGCACACAACAACAAAAAACCAAAGACGATCTTCACTGACCAAAGTCAAGCAATGTCTAGGGCAATTGAAGAAGTGATGCCTGAGACTCACCATGGTTTATGCACATGGCACTTGTTGCAGAATGGAATTAAACATCTTGGAAATGGAATGAAGAAAGGAGGTTCTTTGCTAAGAGGTTTCAGTAAGTGCATGTATGATATTGACATTGAAGCAGATTTTGAGAAAGCTTGGTTTGACTTGGTAAATGAATATAATCTTCACAATAATAATTGGATCAAGTCAGTTTATGCCATTAAAAAAAAATGGGCTGCATGTTATATGAAGGAAGCATTGACACTTGGCATGCGAAGTACACAAGTTAGTGAAAGTTTGAATGCTCACTTCAAAGTTTGTCTGAAACCGAATTTGGGTATCCTACAATTCTTCAAACATTTTGAAAGAATTGTTGAAGAGAAGAGAGAAAAAGAATTGAGTTGTGATTATGAGTCCTCACATAAGCTTGCAAGGTTAATGTATGAAACTTCACCAATACTAATCCAAATGGGAAAGGTATACACACACACTGTATTTGAGTTGTTTCAATATGAGTTTCAGTTATTCTTAACTTTATCTGTACCAACTAGACATGAATCTGACTCTCTTTGTGAATATGTCATCACTAAGGAAAATCATGAAGGATCTTGGAGAGTATCATTTAATCGTGTTTCAACTTCCATTACTTGTAGTTGTAAGATGTATGTTACATTTGGCATACTTTGTTCACATGCATTAAAAGTGTTTGAATTGAATGATGTTAAGGCAATTCCTGAGAAGTATATTTTAAGAAGGTGGACAAGAGAAGCCCGTTATGGCATTGTGCAAGATTTTAGGGGAAAGGAGGTTGAACAAGATCCTAAGTTGTCTAGAAATCGAATGTTCAGGCAAGTTGTTTCTAAGTTCATTAGAGCGGCAACTGTAGCATCGTATAGTGAAGATTGCCTCATGCTTCTTGATAATAGTGTAGACGAAATGTTCAAGAAAGCAATGGAATGTCGCACACAAGCTATAGAAAATGATGGTGATCATCCGTCATTTGTGAGTTCTGATGCTATACAACCAAAGGGATTCAAGAAACATGCTCCTCCAAAGGGAACTAAGCGACATAAAAGTTTCCTTGAGCGTCAGCCTAAGAAAAGAAGTGCTCCTCCAAGTAAACATGCTCAAACTAGTCGCGCCCCACCTCAAAGAAATTCACAGGTATATAAGTCATTATGTAGATTACTTGTTTTAGTTTTACATGTACTTGCACTTATTTTAGTTTTACATAATCATTTTAGGTTATAAAATTAACAACTCAAATGGTTGATGGAGTATCTTGTTCCGCGCCTCCAACTTATGAGCCCCCGCTAGCACGTGAGGACATGTTTGTTAGTTACACAACTATGATGATGGTAATTTCATATCATTTTCATGAGGAACTGTCCTGGATATTAATTATTATTTTTATCACACAGTCATGATACTAATTATTTCTTATTATTAATGTAGGCACCTCTTGATGATGTTACAAATATTCAGGCATTACTTTGA
Protein sequence

>MS.gene014426.t1

MTSSNVDWKPRLGMKFDTMEEAEQFWLAYGFREGFGVRIRFTNKNKHGDVSSCRFVCCKEGLRKKEKKYAYEGKIRRAESRTDCLARITLSRQNGKLVIHEFEGKHNHDLLKRETTHMLRSHRKITEVQANEIDMADDSGLGQKATYQLMSTHAGHRANVGYTEVDVRNYITTKRKRSMVYGDAGYLSQYFQQQLLENPSFFHAYQMDIDEQITNVFWCDAKMILDYGYFGDVVSLDTTYCTNDANRPLAFFSGFNHYRGTIIFGAALMYDETIPSFKWLFETFLQAHNNKKPKTIFTDQSQAMSRAIEEVMPETHHGLCTWHLLQNGIKHLGNGMKKGGSLLRGFSKCMYDIDIEADFEKAWFDLAIPEKYILRRWTREARYGIVQDFRGKEVEQDPKLSRNRMFRQVVSKFIRAATVASYSEDCLMLLDNSVDEMFKKAMECRTQAIENDGDHPSFVSSDAIQPKGFKKHAPPKGTKRHKSFLERQPKKRSAPPSKHAQTSRAPPQRNSQVIKLTTQMVDGVSCSAPPTYEPPLAREDMFVSYTTMMMAPLDDVTNIQALL